National Animal Genome Research - Bioinformatics Coordination Program
Linux CentOS 5, 8-Node Cluster Server
(Commissioned 21:02:49 PM, 28 Jul 28, 2007)

Capacity:

  • Atipa 8-node cluster, each with Dual AMD Opteron 250 (2.2GHz) processor
  • OS: CentOS (Linux) Cluster by Atipa Technologies
    1. One (1) head node (for distribution of parallel jobs and managing the cluster);
    2. Six (6) compute nodes, each with 8 GB RAM and 320 GB HD.
    3. One (1) large compute node with 16 GB RAM and 320 GB HD.
    4. Storage:
      4 x 320GB in raid-5 (1.1TB useable; 2007-2010, retired)
      23 x 2TB in raid-6 (36TB usable; 2010 upgrade).
  • Host: By the Iowa State Univeristy Durham Computation Service Center. A hosting stuff is on duty 24/7.

An ad hoc list of software package installed:

  • CAP3
  • Exonerate
  • GenScan
  • miranda
  • mpiBlast (parallel)
  • MySQL server
  • NCBI Blast suite
  • PHASE
  • Postgres server
  • WU-blast suite
  • ASReml3 (node007)
  • maqview
  • PaCE
  • REPCLASS
  • wgs
  • bowtie
  • bwa
  • cistematic
  • mm9splices
  • RNAFAR
  • samtools

Nodes Monitor
Disclaim: For each of these software listed on the left, users will have to obtain respect users permissions/ license where it applies.


Contact: NAGRP Bioinfo Team

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