COMRAD - Cattle Comparative Radiation Hybrid Map

Marker Table for Chromosome 19

Framework
markers
Marker IDPrimer 1Primer 2Retention
Frequency
Gene Names
 AFL361 CATGCTGCATCAAGTTCTCG GCCACCATTATTACCATCAGTG 0.222   
 BL1006 CCGATACAGGTCCAAAAGGC TCATGCGACTTGAACAGCTC 0.239   
 BM17132 ATCTGCCAGTATCACATCAACA GTTACTTTTCCAGGCATGAAGC 0.226   
 BM6000 ACAGCAATGCCATGGACC TGCCATTTGGATGTGTGC 0.266   
 BM9202 TCTATGAAGACTTTCAGGACCTTC GCATCCCGGTCTCCTATG 0.223   
 BMC1013 AAAAATGATGCCAACCAAATT TAGGTAGTGTTCCTTATTTCTCTGG 0.309   
 BMS1069 GCCCGTACCCAGAAAACC GGACCAGACTTCACAGGGAG 0.209   
 BMS2142 AAGCAGGTTGATGATCTTACCC GTCGGCACTGAAAATGATTATG 0.117   
F1 BMS2389 AATGTTAGGTTTACATGCAGCC AGGCAATAGGATCTCCACTAGC 0.194   
F1 BMS2503 TTGAACAACTACCAGCTTCCC GACATGACTGAGCGCGTG 0.141   
 BMS2842 GAAACTGCCTGCAAAAGTAATC AACTGGTTTTCAGAAGGAGACA 0.258   
F4 BMS501 AGGACTGTACCTGATTAGGCAG GGGGAGATTTACCAGACAGTT 0.17   
 BMS601 CACTAGGACGATGCTCTCAGG TCACAAGAGCAATGACGAGG 0.287   
F2 BMS650 GCTAGCATTTCCCTGGCC CAGAAGCACACAGAGCCAAG 0.191   
 BMS745 TAGGGACTTGTTACCCGTGG TGCAAGCTGTGAGGAGGAG 0.233   
F1 BP20 TCTGTGGGTGAACAAGCAAG GGCTCCCTAAAGACCCACTC 0.129   
F3 CSSM065 TTCCTGCTTGGTGAAACTTTGAAC CAACTCAAAGCTTCAACAGCAGCC 0.17   
F4 DIK042 CTATGGAGTAAGAGCCACGG CACCCCTTGCCTCTATCTGA 0.25   
 ETH3 GAACCTGCCTCTCCTGCATTGG ACTCTGCCTGTGGCCAAGTAGG 0.234   
F3 ETV4* GCAGTTCTTGGTGCTCTGTGTTC CAGATGTAGTGGAGGTGAAACCCC 0.239   
 GFAP* CCTGGTAAGATGCACCTCGA CTGGAAGTCAGGAGCACTG 0.161 glial fibrillary acidic protein 
 HEL10 ATCTGCCTGAAGCCAGTCAC GGTTTCCTGCACCTGCATGA 0.228   
 IDVGA44 GGGAGAATGGATGGAACCAAAT TTCGAAGACGGGCAGACAGG 0.298   
 IDVGA46 AAATCCTTTCAAGTATGTTTTCA ACTCACTCCAGTATTCTTGTCTG 0.096   
F2 IDVGA47 GCTCCAGACTTTGGGGGTATTT CTGGTGGTTCAGGGGTTAGGAC 0.172   
F4 IDVGA48 GCAAGGACTGAGCACCTATTGT CAAGCACGGTCTCACTCCAT 0.215   
F1 ILSTS014 CTGACTATGGTGATAATCCC TCTTTTCCCTTTCCTTCCCC 0.109   
 IOBT34 TCCTTCCATCAATGTGTCAGTCC TTGGGATTCGGTGGTCAGTCTG 0.183   
 IOBT965 AGATCTAGCGCCAGACAGACGTGTCAT CCCGGGGTTGTGGGTAAGCGGAGTT 0.218   
 KRT10* TGTCTAAAATGCTGTAGCTTTGGTG GTTGGGTCCTTACTAAATAACGAGC 0.181 cytokeratin VI 
 LPO* ATTGTGCTAGGTAGTGAGATGCAG GTCTTTGATTATCCTCCAGGTGTTG 0.237 lactoperoxydase 
 MAP2C* TTTACCAGACAGTTTAGTTTTGAGC AAGGATTCTGTCTGATACCACTTAG 0.16 microtubule associated protein 2C 
F2 OarFCB193 TTCATCTCAGACTGGGATTCAGAAAGGC GCTTGGAAATAACCCTCCTGCATCCC 0.204   
F4 P4HB* CTTGGTGGAGTCCAGTGAGGTG CAAGAAGAACTGCTTGCGGAG 0.181   
F2 RM186 GGGACCAAAACAGACCAAGA CGTGAAATTTGCCTCTGTCC 0.209   
 RM222 CCTAGAGAATTCAATGGACTGAAG CACAAAGTCACTTTTGTCGGCAA 0.151   
 RM388 GGGGACCATCACGTACACTC GGGACAGCCAGTCTTCTCAG 0.245   
 RM99 CCAAAGAGTCTAACACAACTGAG ATCCGAACCAAAATCCCATCAAG 0.191   
F3 STAT5B* TCACAGAATGGCAGAGACCAA AACACCTGGGTTCACTCAGAT 0.223 signal transducer and activator of transcription 5B 
F1 UWCA33 AGTTCAGTGTTGGCGGAAATGA CTTTCTATTCATCAGTAATCACAAG 0.17   
Markers below are Not included in the map
 BMC5012 TGAAAGAGAAAGACAGCTGGG TCCCATCTATAGCTCCAGCTG 0.126   
 BMS1920 TCCCACCTACTTGGAAAATTG ATGACTCAATGACCAACTGACC 0.106   
 CHRNB1* TCGATTCACTCCGCATCTCAG CGACGTTGATGTCCAGAGCAAC 0.213 cholinergic receptor, nicotinic, beta polypeptide 1 
 CSSM70 ATACAGATTAAATACCCACCTG TTCTAACAGCTGTCACTCAGGC 0.16   
 IDVGA42 ACCGTGATGAACTCTGGTTTAC GAATTTCATCTAGGGAGGAAGTG 0.277   
 ILSTS73 AACAGAGAGTATGGTGGTGG GAAAATCCCGTAGACAGAGG 0.245   
 NF1* GAGAGATATATCCAACGTGCAAGTG TGCCCATGAGACACTCGTTTG 0.196   
  • Back to the chromosome panel
  • Data from http://www.projects.roslin.ac.uk/comrad/introduction.html
  • Contact: Dr John Williams
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