format-version: 1.2
date: 19:05:2009 10:25
saved-by: caripark
auto-generated-by: OBO-Edit 2.0
subsetdef: slim_cattle "ATO Cattle Slim"
subsetdef: slim_chkn "ATO Chicken Slim"
subsetdef: slim_pig "ATO Pig Slim"
default-namespace: ATO_namespace

[Term]
id: ATO:0000003
name: Immune function trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true

[Term]
id: ATO:0000004
name: product quality
def: "characteristics related to the ability of a product produced by or obtained from the body of an animal to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000701 ! product trait

[Term]
id: ATO:0000005
name: production trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true

[Term]
id: ID:0000005
name: disease resistance
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000007
name: parasite load
def: "number of parasites harbored by an organism" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000675 ! response to parasitic infection
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000008
name: parasite resistance
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000014
name: carcass trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000015
name: egg product quality
def: "characteristics related to the ability of an egg to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ATO:0000004 ! product quality
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000016
name: meat product quality
def: "characteristics related to the ability of meat products to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ATO:0000004 ! product quality
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000017
name: feed intake
def: "Amount of feed consumed" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "feed consumption" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000020
name: egg production
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000023
name: feed conversion
def: "measure of an animal's ability to convert feed into additional body mass" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
synonym: "feed efficiency" RELATED []
relationship: part_of MT:0001731 ! postnatal growth rate
relationship: part_of MT:0002121 ! metabolism
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000025
name: fertility
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000027
name: reproductive organ
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000036
name: body weight (initial)
def: "Body weight at the beginning of a test period" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000046
name: corticosterone response
def: "Concentration of corticosterone in the blood after manual restraint of a bird.  Used as a measure of acute stress." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000047
name: circulating creatine kinase level
def: "concentration in the blood of the enzyme creatine kinase, which uses ATP to convert creatine to phosphocreatine and ADP; elevated levels are indicative of muscle damage." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
synonym: "creatine kinase concentration" EXACT []
is_a: MT:0001570 ! circulating enzyme level
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000050
name: liver abnormalities
def: "Liver that is lighter in color, has an abnormal surface texture, or both" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000051
name: mean blood cell volume
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000053
name: plasma concentration of cholesterol
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000054
name: plasma concentration of glucose
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000055
name: circulating insulin-like growth factor level
def: "concentration in the blood of insulin-like growth factor (IGF), a polypeptide hormone similar in sequence to insulin" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "plasma concentration of IGF" EXACT []
is_a: MT:0005418 ! circulating hormone level
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000056
name: plasma concentration of insulin
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000057
name: plasma concentration of triglycerides
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000058
name: right ventricular weight as a percentage of body weight
def: "Weight of the right ventricle of the heart divided by total body weight" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000059
name: total heart ventricle morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the lower chambers of the heart" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0005294 ! heart ventricle morphology
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000060
name: troponin T concentration
def: "concentration in the blood of one of a complex of three regulatory proteins required for skeletal and cardiac muscle contraction; used as an indicator for myocardial damage." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0002972 ! cardiac muscle contractility
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000095
name: anatomy
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000100
name: fat deposition
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000104
name: meat color
def: "characteristics related to the color of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000105
name: muscling
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000107
name: pH
def: "Measurement of muscle pH following slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000109
name: meat texture
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000114
name: carcass weight
def: "weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001259 ! body weight
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000128
name: fat weight
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000172
name: follicle stimulating hormone
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000173
name: gonadrotropin releasing hormone level
def: "level of the peptide hormone that is produced in the hypothalamus and stimulates the release of follicle stimulating hormone and leutenizing hormone from the anterior pituitary gland" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
synonym: "leutenizing hormone releasing hormone level" EXACT []
is_a: MT:0003953 ! hormone level
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000174
name: luteinizing hormone
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000175
name: progesterone
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000176
name: prostaglandins
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000204
name: male measurements
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:01:22Z

[Term]
id: ID:0000207
name: accessory sperm
def: "additional spermatazoa retained in the zona pellucida of the oocyte after penetration of the first sperm during fertilization" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0005410 ! fertilization
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000209
name: retrograde sperm loss
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000211
name: sex drive
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000212
name: sperm activity score
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000213
name: sperm counts
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000214
name: sperm quality
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000221
name: body weight (5 weeks)
def: "Body weight at 5 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:42:21Z

[Term]
id: ID:0000223
name: pectoral muscle weight
def: "combined weight of the pectoralis major and pectoralis minor" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "breast muscle weight" EXACT []
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of MT:0003346 ! pectoral muscle morphology
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000224
name: bursa of Fabricius weight
def: "weight of an epithelial outgrowth of the cloaca in birds where B-lymphocyte maturation occurs" [CP:Cari Park_Iowa State University curator, MeSH:A10.549.175]
subset: slim_chkn
relationship: part_of ID:0000668 ! bursa of Fabricius size
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000225
name: drumstick weight
def: "weight of the hindlimb of a bird, consisting of the tibia and the surrounding meat and skin" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000714 ! product weight
relationship: part_of ID:0000689 ! hindlimb weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000226
name: gizzard weight
def: "weight of the secondary, muscular stomach in some animals used for grinding up food" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000667 ! gizzard morphology
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000227
name: heart weight
def: "Weight of the organ that pumps blood throughout the body" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000228
name: intestine length
def: "Length of the digestive tract" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000229
name: liver weight
def: "Weight of the liver removed from a carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000230
name: lung weight
def: "Weight of the lung removed from a carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000231
name: shank weight
def: "Weight of the part of the leg between the claw and the first joint" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000232
name: skin fat weight
def: "Weight of skin plus attached fat obtained from the breast, leg, and thigh of a chicken" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000233
name: spleen weight
def: "weight of the spleen" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0002224 ! spleen size
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000234
name: thigh muscle weight
def: "weight of the muscle tissue surrounding the femur of the chicken" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of ID:0000235 ! thigh weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000235
name: thigh weight
def: "weight of the part of the chicken consisting of the femur and surrounding meat and skin." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000714 ! product weight
relationship: part_of ID:0000689 ! hindlimb weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000236
name: weight of the front half of the carcass
def: "weight of the front section of the chicken carcass that results when the whole bird is cut perpendicular to the spine at the ilium, just above the femur; it consists of the entire breast, the adjacent back and ribs, and both wings." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000114 ! carcass weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000237
name: wing weight
def: "weight of the forelimb of a bird, consisting of the humerus, radius, ulna, and metacarpus, and all associated muscle and skin" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000687 ! forelimb weight
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000238
name: feathering
def: "initial appearance and growth of feathers on young birds" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000664 ! feather morphology
created_by: caripark
creation_date: 2008-11-10T03:46:33Z

[Term]
id: ID:0000239
name: drumstick muscle weight
def: "weight of the muscle tissue surrounding the tibia of the chicken" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of ID:0000225 ! drumstick weight
created_by: caripark
creation_date: 2008-11-10T03:56:45Z

[Term]
id: ID:0000240
name: contrafreeloading
def: "to search for food, even though food is readily available" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0001432 ! food preference
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000241
name: fear-related behavior
def: "behavior observed in response to perceived danger" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002572 ! emotion/affect behavior
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000242
name: feather pecking
def: "gentle, forceful, or aggressive pecking of the other birds in an enclosure" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000243
name: receiving feather pecking
def: "a bird is the recipient of gentle, forceful, or aggressive pecking by the other birds in an enclosure" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000244
name: social tendency
def: "Tendency to choose freely available food or food in combination with social stimuli in a maze test with several options" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000245
name: antibody response to x
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000246
name: bacteria count in cecum
def: "bacterial count (cfu) in the outpouching(s) of the large intestine below the entrance of the small intestine" [CP:Cari Park_Iowa State University curator, MeSH:A03.556.124.526.209]
subset: slim_chkn
is_a: ID:0000665 ! bacteria count
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000247
name: bacteria count in cloaca
def: "bacterial count (cfu) in the common cavity into which the intestinal, genital, and urinary tracts open in some species" [CP:Cari Park_Iowa State University curator, ISBN:9780618701728]
subset: slim_chkn
is_a: ID:0000665 ! bacteria count
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000248
name: Marek's disease-related traits
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000249
name: oocyst shedding
def: "presence in the feces of the encapsulated zygote stage of certain protozoans" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000675 ! response to parasitic infection
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000250
name: spleen bacterial burden after challenging with y
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000251
name: time to achieve maximum antibody response
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000252
name: total mortality
def: "Ability of an individual to survive until the end of an experiment" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:48:43Z

[Term]
id: ID:0000253
name: egg albumen height
def: "height of the inner thick albumen (egg white) when an egg is broken onto a flat surface" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000695 ! egg albumen morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000254
name: egg albumen weight
def: "weight of the egg white (weight of the entire egg minus weights of the yolk and shell)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000577 ! egg weight
relationship: part_of ID:0000695 ! egg albumen morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000255
name: egg shell color
def: "objective measurements of egg shell color" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000256
name: egg shell percentage
def: "Percentage of the mass of an egg comprised of shell ([shell weight/total weight] x100)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000257
name: egg shell shape
def: "the ratio of the width of the egg at its widest point to its length at the longest point" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000258
name: egg shell strength
def: "a measure of the force required to fracture the shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000698 ! egg shell physiology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000259
name: egg shell thickness
def: "thickness of the exterior shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000260
name: egg shell weight
def: "weight of the rinsed and dried egg shell" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000577 ! egg weight
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000261
name: Haugh unit
def: "A measure of the internal quality of an egg, taking into account its weight and the height of the albumen (egg white) surrounding the yolk" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000263
name: long length of egg
def: "length of egg from end to end" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000264
name: short length of egg
def: "diameter of egg (shorter dimension)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000265
name: egg specific gravity
def: "ratio of the weight of an egg to the weight of an equal volume of water; an indicator of eggshell thickness" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000266
name: egg yolk weight
def: "weight of the yolk of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000577 ! egg weight
relationship: part_of ID:0000697 ! egg yolk morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000267
name: yolk index
def: "The height of the yolk of a broken egg divided by the yolk diameter" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000268
name: color of the breast
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000269
name: white meat weight
def: "combined weight of the breast (pectoralis major and pectoralis minor) and wing meat; back muscle weight may or may not be included" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000270
name: egg shell redness
def: "chromatic component of egg shell color from green to red (a*)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000255 ! egg shell color
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000271
name: egg shell lightness
def: "luminance or lightness component of egg shell color (L*)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000255 ! egg shell color
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000272
name: egg shell yellowness
def: "chromatic component of egg shell color from blue to yellow (b*)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000255 ! egg shell color
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000273
name: total blood cell count
def: "number of red and white blood cells" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002429 ! blood cell morphology/development
created_by: caripark
creation_date: 2008-11-11T10:27:07Z

[Term]
id: ID:0000274
name: bone mineral content
def: "mineral content of a bone, as determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0002896 ! bone mineralization
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000275
name: bone mineral density
def: "The mineral content of a bone, adjusted for the bone's size" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000277
name: humerus bone mineral content
def: "mineral content of the humerus, as determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000274 ! bone mineral content
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000278
name: humerus bone density
def: "the mineral content of the humerus, adjusted for the bone's size" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "humerus bone mineral density" EXACT []
relationship: part_of MT:0005007 ! bone density
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000281
name: tibia area
def: "area of the tibia, calculated based on the length and width determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0000558 ! tibia morphology
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000282
name: tibia bone mineral content
def: "mineral content of the tibia, as determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000274 ! bone mineral content
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000283
name: tibia bone density
def: "the mineral content of the tibia, adjusted for the bone's size" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "tibia bone mineral density" EXACT []
relationship: part_of MT:0005007 ! bone density
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000284
name: tibia breaking force
def: "the amount of force required to break the tibia in the middle, while it is supported on both ends" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000285
name: tibia length
def: "Length of the tibia from end to end" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000286
name: tibia modulus of elasticity
def: "a measure of the tibia's ability to return to its original shape after force is applied in the center, while the bone is supported on the ends (stress:strain ratio)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000287
name: tibia strain
def: "an indicator of the amount of bending the tibia undergoes when force is applied in the center, and the bone is supported at both ends (change in length per unit length of bone)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000288
name: tibia stress
def: "force applied to the tibia per unit area" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000289
name: tibia width
def: "width of the tibia halfway between the ends" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0000558 ! tibia morphology
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000290
name: age at first egg
def: "Age at which a bird lays its first egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000291
name: annual egg production
def: "Eggs laid by a bird in a year" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000292
name: egg production rate
def: "number of eggs laid by a bird divided by the number of days over which they are produced" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "eggs laid per day" EXACT []
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000294
name: number of eggs produced
def: "number of eggs produced over a given period of time" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000296
name: body weight (final)
def: "Animal's body weight at the end of a defined test period" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "test end body weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000297
name: feed efficiency
def: "Ratio of body weight gain to amount of feed consumed" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:46:34Z

[Term]
id: ID:0000298
name: conformation score
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:50:00Z

[Term]
id: ID:0000299
name: weight loss during transport
def: "difference in body weight before and after transport" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0001263 ! weight loss
created_by: caripark
creation_date: 2008-11-11T10:51:51Z

[Term]
id: ID:0000425
name: skin weight
def: "weight of the membranous protective covering of the body; may include closely associated fat" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
relationship: part_of MT:0002060 ! skin morphology
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000577
name: egg weight
def: "weight of a whole, intact egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-12-17T08:24:20Z

[Term]
id: ID:0000664
name: feather morphology
namespace: Trait.ontology
subset: slim_chkn
is_a: MT:0005393 ! skin/coat/nails/feathers trait
created_by: caripark
creation_date: 2009-03-10T01:08:34Z

[Term]
id: ID:0000665
name: bacteria count
def: "number of viable bacteria present (cfu)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_a: ID:0000673 ! response to bacterial infection
created_by: caripark
creation_date: 2009-03-13T11:09:51Z

[Term]
id: ID:0000667
name: gizzard morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the secondary, muscular stomach in some animals used for grinding up food" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0000462 ! digestive system morphology
created_by: caripark
creation_date: 2009-03-30T10:31:57Z

[Term]
id: ID:0000668
name: bursa of Fabricius size
def: "size of an epithelial outgrowth of the cloaca in birds where B-lymphocyte maturation occurs" [CP:Cari Park_Iowa State University curator, MeSH:A10.549.175]
subset: slim_chkn
is_a: MT:0002221 ! lymph organ size
created_by: caripark
creation_date: 2009-03-30T12:56:46Z

[Term]
id: ID:0000671
name: glucocorticoid level
def: "concentration of the corticosteroids regulating carbohydrate metabolism and exhibiting anti-inflammatory activity" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_chkn
subset: slim_pig
is_a: MT:0003953 ! hormone level
created_by: caripark
creation_date: 2009-03-30T02:30:33Z

[Term]
id: ID:0000673
name: response to bacterial infection
def: "the body's reaction to invasion and multiplication of bacteria in its tissues, or the body's reaction to components of or toxins produced by bacteria" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_a: MT:0005025 ! response to infection
created_by: caripark
creation_date: 2009-03-30T03:33:42Z

[Term]
id: ID:0000675
name: response to parasitic infection
def: "the body's reaction to invasion and multiplication of parasites in its tissues, or the body's reaction to components of or toxins produced by parasites" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0005025 ! response to infection
created_by: caripark
creation_date: 2009-03-30T03:33:42Z

[Term]
id: ID:0000683
name: total heart ventricle size
def: "the physical dimensions, proportions, magnitude, or extent of the lower chambers of the heart" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000059 ! total heart ventricle morphology
created_by: caripark
creation_date: 2009-04-01T03:44:26Z

[Term]
id: ID:0000684
name: total heart ventricle weight
def: "weight of the lower chambers of the heart" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000683 ! total heart ventricle size
created_by: caripark
creation_date: 2009-04-01T03:45:39Z

[Term]
id: ID:0000687
name: forelimb weight
def: "weight of the anterior extremeties" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
relationship: part_of MT:0000550 ! forelimb morphology
created_by: caripark
creation_date: 2009-04-02T08:23:43Z

[Term]
id: ID:0000688
name: metatarsal bone weight
namespace: Trait.ontology
subset: slim_chkn
synonym: "shank weight" NARROW []
relationship: part_of MT:0003072 ! metatarsal bone morphology
created_by: caripark
creation_date: 2009-04-02T11:09:39Z

[Term]
id: ID:0000689
name: hindlimb weight
def: "weight of the posterior extremeties" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0000556 ! hindlimb morphology
created_by: caripark
creation_date: 2009-04-02T11:41:35Z

[Term]
id: ID:0000695
name: egg albumen morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the albumen (white) of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:33:39Z

[Term]
id: ID:0000696
name: egg shell morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:33:39Z

[Term]
id: ID:0000697
name: egg yolk morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the yolk of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:33:39Z

[Term]
id: ID:0000698
name: egg shell physiology
def: "any measurable characterisic related to the function of the shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:35:44Z

[Term]
id: ID:0000699
name: egg yolk diameter
def: "diameter of the yolk when an egg is broken onto a flat surface" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000697 ! egg yolk morphology
created_by: caripark
creation_date: 2009-04-03T11:37:29Z

[Term]
id: ID:0000700
name: egg yolk height
def: "height at the highest point of the yolk when an egg is broken onto a flat surface" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000697 ! egg yolk morphology
created_by: caripark
creation_date: 2009-04-03T11:37:29Z

[Term]
id: ID:0000701
name: product trait
def: "any measurable or observable characteristic of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait
created_by: caripark
creation_date: 2009-04-06T02:14:59Z

[Term]
id: ID:0000710
name: pectoralis muscle morphology
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2009-04-28T01:59:13Z

[Term]
id: ID:0000711
name: abdominal fat pad weight
def: "weight of the encapsulated adipose tissue in the abdomen" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0000010 ! abdominal fat pad morphology
created_by: caripark
creation_date: 2009-04-29T03:54:23Z

[Term]
id: ID:0000712
name: skeletal muscle weight
def: "weight of one or more of the striated muscles attached to the skeleton" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003398 ! skeletal muscle size
is_a: MT:0004233 ! muscle weight
created_by: caripark
creation_date: 2009-05-01T04:13:32Z

[Term]
id: ID:0000714
name: product weight
def: "weight of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2009-05-04T03:19:20Z

[Term]
id: ID:0000717
name: response to novel food
def: "reaction upon exposure to novel food" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0001431 ! eating behavior
is_a: MT:0003107 ! response to novelty
created_by: caripark
creation_date: 2009-05-05T03:47:58Z

[Term]
id: MT:0000001
name: Trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig

[Term]
id: MT:0000003
name: adipose tissue morphology
namespace: Trait.ontology
alt_id: MT:0000011
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "adipose tissue abnormalities" EXACT []
is_a: MT:0005375 ! adipose tissue trait

[Term]
id: MT:0000010
name: abdominal fat pad morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue in the abdomen" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0005334 ! fat pad morphology

[Term]
id: MT:0000179
name: blood chemistry
namespace: Trait.ontology
alt_id: MT:0001546
def: "anomalous concentrations of proteins, minerals, nutrients, gases, or other substances in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "blood chemistry abnormalities" EXACT []
is_a: MT:0005428 ! clinical chemistry

[Term]
id: MT:0000180
name: circulating cholesterol level
namespace: Trait.ontology
def: "anomalous concentration in the blood of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal cholesterol level" EXACT []
is_a: MT:0003947 ! cholesterol level
is_a: MT:0003949 ! circulating lipid level

[Term]
id: MT:0000187
name: triglyceride level
namespace: Trait.ontology
alt_id: MT:0001551
def: "anomalous concentration of this molecule, glycerol esterified at each of its three hydroxyl groups by a fatty acid; triglyceride is an important molecule for storage of fatty acids in adipose tissue" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal triacylglycerol level" EXACT []
is_a: MT:0001547 ! lipid level

[Term]
id: MT:0000188
name: circulating glucose level
namespace: Trait.ontology
alt_id: MT:0001557
def: "anomalous concentration in the blood of this major monosaccharide of the body; it is an important energy source" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood glucose level" EXACT []
is_a: MT:0002078 ! glucose homeostasis

[Term]
id: MT:0000226
name: mean corpuscular volume
namespace: Trait.ontology
alt_id: MT:0001590
def: "deviation from normal for the average amount of space occupied by each red blood cell, calculated from the hematocrit and red cell count, in erythrocyte indices" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
comment: MCV is calculated by dividing the hematocrit by the total number of RBCs and multiplying this number by ten (10). This was found on medfriendly.com. cwg 3/10/03
subset: slim_chkn
synonym: "abnormal MCV" EXACT []
synonym: "abnormal mean cell volume" EXACT []
is_a: MT:0002124 ! red blood cell

[Term]
id: MT:0000245
name: erythropoiesis
namespace: Trait.ontology
alt_id: MT:0001608
def: "atypical process of red blood cell formation" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8, tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal erythrocytopoiesis" EXACT []
synonym: "erythropoiesis abnormalities" EXACT []
is_a: MT:0002123 ! hematopoiesis

[Term]
id: MT:0000266
name: cardiac morphology
namespace: Trait.ontology
alt_id: MT:0000271
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the organ that pumps blood through the body" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "heart morphology" RELATED []
xref: GO:0007505
xref: MP:0000266
is_a: MT:0002127 ! cardiovascular system morphology

[Term]
id: MT:0000462
name: digestive system morphology
namespace: Trait.ontology
alt_id: MT:0000463
alt_id: MT:0002141
def: "anomalous structure of the system dedicated to the mechanical, chemical, and enzymatic processing of food" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "digestive system abnormalities" EXACT []
synonym: "digestive system defects" EXACT []
synonym: "digestive system: dysmorphology" EXACT []
xref: MGI:2173601
is_a: MT:0005381 ! digestive/alimentary trait

[Term]
id: MT:0000545
name: limbs/digits/tail morphology
namespace: Trait.ontology
def: "morphological or developmental anomaly of the digits, autopod, limbs, or tail" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal extremities" EXACT []
synonym: "abnormal extremity morphology" EXACT []
synonym: "extremities abnormalities" EXACT []
synonym: "extremities defects" EXACT []
is_a: MT:0005371 ! limbs/digits/tail trait

[Term]
id: MT:0000550
name: forelimb morphology
namespace: Trait.ontology
def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior extremeties" [tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "forelimb abnormalities" EXACT []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0000556
name: hindlimb morphology
namespace: Trait.ontology
def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior extremeties" [tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "hindlimb abnormalities" EXACT []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0000558
name: tibia morphology
namespace: Trait.ontology
def: "structural anomaly of the medial and larger of the two bones of the lower leg" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal tibia" EXACT []
is_a: MT:0003723 ! long bone morphology

[Term]
id: MT:0000598
name: liver morphology
namespace: Trait.ontology
alt_id: MT:0000595
def: "malformation or absence of this bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, J:23170, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal liver" EXACT []
synonym: "Liver" EXACT []
is_a: MT:0002138 ! liver/biliary system morphology

[Term]
id: MT:0000685
name: immune system morphology
namespace: Trait.ontology
def: "morphological anomalies in the organs or cells associated with the development and formation of lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "immune system abnormalities" EXACT []
synonym: "lymphoid system abnormalities" EXACT []
synonym: "lymphopoietic system abnormalities" EXACT []
is_a: MT:0005387 ! immune system trait

[Term]
id: MT:0000689
name: spleen morphology
namespace: Trait.ontology
alt_id: MT:0002226
def: "atypical structure of the organ that functions to filter blood and to store red corpuscles and platelets" [J:27463, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal spleen structure" EXACT []
synonym: "spleen abnormalities" EXACT []
is_a: MT:0002396 ! hematopoietic system morphology/development
is_a: MT:0002722 ! immune system organ morphology

[Term]
id: MT:0000759
name: skeletal muscle morphology
namespace: Trait.ontology
def: "anomalous structure of any of the striated muscle fibers connected at either or both extremities with the bony framework of the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal skeletal muscle" EXACT []
synonym: "skeletal muscle abnormalities" EXACT []
is_a: MT:0002108 ! muscle morphology

[Term]
id: MT:0001175
name: lung morphology
namespace: Trait.ontology
def: "malformed organ of respiration" [J:35802]
subset: slim_chkn
synonym: "abnormal lung" EXACT []
is_a: MT:0002132 ! respiratory system morphology

[Term]
id: MT:0001259
name: body weight
namespace: Trait.ontology
def: "anomaly in average weight compared to controls" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0001263
name: weight loss
namespace: Trait.ontology
def: "progressive reduction of body weight below normal average for age" [J:45400]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001259 ! body weight

[Term]
id: MT:0001431
name: eating behavior
namespace: Trait.ontology
alt_id: MT:0001430
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002069 ! eating/drinking behavior

[Term]
id: MT:0001432
name: food preference
namespace: Trait.ontology
subset: slim_chkn
is_a: MT:0001431 ! eating behavior

[Term]
id: MT:0001533
name: skeleton physiology
namespace: Trait.ontology
def: "anomalous function of the bony framework of the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal bone/ skeleton physiology" EXACT []
synonym: "bone/ skeletal physiology abnormalities" EXACT []
is_a: MT:0005390 ! skeleton trait

[Term]
id: MT:0001542
name: bone strength
namespace: Trait.ontology
def: "change in the ability of bone to endure the application of force without yielding or breaking" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0001533 ! skeleton physiology

[Term]
id: MT:0001544
name: cardiovascular system physiology
namespace: Trait.ontology
alt_id: MT:0000302
alt_id: MT:0001623
alt_id: MT:0001626
alt_id: MT:0002130
def: "any measurable characteristic related to the function of or processes in the heart or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
relationship: part_of MT:0005385 ! cardiovascular system trait

[Term]
id: MT:0001547
name: lipid level
namespace: Trait.ontology
def: "anomalous concentrations of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water) in the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002118 ! lipid homeostasis

[Term]
id: MT:0001560
name: circulating insulin level
namespace: Trait.ontology
alt_id: MT:0000191
def: "anomalous blood concentration of this polypeptide hormone, secreted by beta cells of the pancreas, that promotes glucose utilization, protein synthesis, and the formation and storage of neutral lipids" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal insulin level" EXACT []
is_a: MT:0002078 ! glucose homeostasis

[Term]
id: MT:0001570
name: circulating enzyme level
namespace: Trait.ontology
alt_id: MT:0000201
def: "aberrant concentration in the blood of any of the proteins that act as catalysts for biological reactions" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood enzyme level" EXACT []
is_a: MT:0005319 ! enzyme/ coenzyme level
is_a: MT:0005416 ! circulating protein level

[Term]
id: MT:0001731
name: postnatal growth rate
namespace: Trait.ontology
def: "anomaly in reaching a developmental stage or stages after birth" [il:Ira Lu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0001764
name: homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body with respect to various functions and to chemical composition of the fluids and tissues" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "homeostasis abnormalities" EXACT []
is_a: MT:0005376 ! homeostasis/metabolism trait

[Term]
id: MT:0001784
name: fluid regulation
namespace: Trait.ontology
def: "anomalous control of intracellular and/or extracellular fluid" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0001785
name: edema
namespace: Trait.ontology
alt_id: MT:0001338
def: "an accumulation of an excessive amount of watery fluid in cells or intercellular tissues" [J:54065, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
synonym: "oedema" EXACT []
is_a: MT:0001784 ! fluid regulation

[Term]
id: MT:0001787
name: pericardial edema*
namespace: Trait.ontology
alt_id: MT:0000290
def: "accumulation of watery fluid in the pericardial sac of the heart" [J:52597]
subset: slim_chkn
synonym: "fluid in the heart sac" EXACT []
synonym: "pericardial edema" EXACT []
is_a: MT:0001785 ! edema

[Term]
id: MT:0001790
name: immune system physiology
namespace: Trait.ontology
alt_id: MT:0001789
def: "deviation from the normal function of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
comment: pslim term (new)
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "Immune System" EXACT []
synonym: "immune system/response abnormalities" EXACT []
synonym: "immune system: response/ function abnormalities" EXACT []
xref: GO:0006955
is_a: MT:0005387 ! immune system trait

[Term]
id: MT:0001800
name: humoral immune response
namespace: Trait.ontology
def: "abnormal immune function mediated by antibodies" [Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_chkn
subset: slim_pig
synonym: "antibody response" EXACT []
synonym: "antibody-mediated immune response abnormalities" EXACT []
synonym: "humoral immune response dysfunction" EXACT []
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0001919
name: reproductive system physiology
namespace: Trait.ontology
def: "anomaly in the function of the organs associated with producing offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "reproductive system physiology anomalies" EXACT []
is_a: MT:0005389 ! reproductive system trait

[Term]
id: MT:0001929
name: gametogenesis
namespace: Trait.ontology
def: "defective formation or differentiation of germ cells" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, J:42324, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0001937
name: sexual maturation
namespace: Trait.ontology
def: "a delay or a block in the development of the sexual organs at a given age" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002212 ! secondary sex determination

[Term]
id: MT:0002060
name: skin morphology
namespace: Trait.ontology
def: "malformation or atypical structure of the membranous protective covering of the body" [J:56777, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal cutis" EXACT []
synonym: "abnormal skin anatomy" EXACT []
is_a: MT:0002096 ! skin condition/ morphology

[Term]
id: MT:0002069
name: eating/drinking behavior
namespace: Trait.ontology
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
xref: MGI:2173574
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002078
name: glucose homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium or processing in the body with respect to glucose in the fluids and tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal glucose metabolism" EXACT []
synonym: "metabolism: abnormal glucose homeostasis" EXACT []
xref: MGI:2173579
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0002089
name: postnatal growth/weight/body size
namespace: Trait.ontology
alt_id: MT:0001252
def: "increased or decreased average body size, weight or growth characteristic abnormalities manifesting after birth" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: phenoslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal trunk/ body shape" EXACT []
synonym: "growth/weight/body size abnormality: postnatal" EXACT []
synonym: "trunk/ body shape abnormalities" EXACT []
xref: GO:0040007
xref: GO:0040014
xref: MGI:2173534
is_a: MT:0005378 ! growth/size trait

[Term]
id: MT:0002096
name: skin condition/ morphology
namespace: Trait.ontology
alt_id: MT:0001185
def: "malformed or atypical condition of the skin" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_chkn
subset: slim_pig
synonym: "abnormal skin" EXACT []
synonym: "skin abnormalities" EXACT []
synonym: "skin: texture/condition anomalies" EXACT []
xref: MGI:2173545
is_a: MT:0005393 ! skin/coat/nails/feathers trait

[Term]
id: MT:0002106
name: muscle physiology
namespace: Trait.ontology
alt_id: MT:0002105
def: "anomalous function of the muscle, not due to an anatomical defect" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: former pslim term
subset: slim_chkn
subset: slim_pig
synonym: "muscle physiology abnormalities" EXACT []
synonym: "musculature: physiological defects" EXACT []
xref: MGI:2173559
is_a: MT:0005369 ! muscle trait

[Term]
id: MT:0002108
name: muscle morphology
namespace: Trait.ontology
alt_id: MT:0000728
alt_id: MT:0000758
def: "abnormal development of muscle tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal muscle" EXACT []
synonym: "abnormal musculature" EXACT []
synonym: "muscle abnormalities" EXACT []
synonym: "musculature abnormalities" EXACT []
synonym: "musculature: muscle dysmorphology" EXACT []
xref: MGI:2173558
is_a: MT:0005369 ! muscle trait

[Term]
id: MT:0002109
name: limb morphology
namespace: Trait.ontology
alt_id: MT:0000546
def: "form, structure, or number of limbs" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal limb" EXACT []
synonym: "extremities: limb dysmorphology" EXACT []
synonym: "limb abnormalities" EXACT []
xref: MGI:2173549
is_a: MT:0000545 ! limbs/digits/tail morphology

[Term]
id: MT:0002115
name: skeleton extremities morphology
namespace: Trait.ontology
def: "abnormal development of limb, foot or tail bones resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_chkn
subset: slim_pig
synonym: "skeletal: extremities defects" EXACT []
xref: MGI:2173563
is_a: MT:0000545 ! limbs/digits/tail morphology
is_a: MT:0005508 ! skeleton morphology

[Term]
id: MT:0002118
name: lipid homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body with respect to lipids in the fluids and tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "metabolism: abnormal lipid homeostasis" EXACT []
xref: MGI:2173578
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0002121
name: metabolism
namespace: Trait.ontology
alt_id: MT:0002120
def: "altered chemical and physical processes of the body or of a tissue, not due to lipid or glucose chemistry" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "metabolism: other metabolic defect" EXACT []
synonym: "metabolism: other metabolic defect measured by clinical chemistry" EXACT []
xref: MGI:2173580
xref: MGI:2173581
is_a: MT:0005376 ! homeostasis/metabolism trait

[Term]
id: MT:0002123
name: hematopoiesis
namespace: Trait.ontology
alt_id: MT:0000236
alt_id: MT:0000241
alt_id: MT:0001600
alt_id: MT:0001604
alt_id: MT:0001605
alt_id: MT:0002402
def: "abnormal development of the enucleated fetal and adult erythrocytes that develop in the aorta, genital ridge and mesonephros region and later in the fetal and adult liver" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood development" EXACT []
synonym: "abnormal definitive hematopoiesis" EXACT []
synonym: "abnormal hematogenesis" EXACT []
synonym: "abnormal hematosis" EXACT []
synonym: "abnormal hemogenesis" EXACT []
synonym: "abnormal hemopoiesis" EXACT []
synonym: "abnormal sanguification" EXACT []
synonym: "blood development abnormalities" EXACT []
synonym: "deregulated hematopoiesis" EXACT []
synonym: "hematology: hematopoietic anomalies" EXACT []
synonym: "hematopoiesis abnormalities" EXACT []
synonym: "myeloid stem cell abnormalities" EXACT []
xref: MGI:2173583
is_a: MT:0002429 ! blood cell morphology/development

[Term]
id: MT:0002124
name: red blood cell
namespace: Trait.ontology
def: "anomaly in the structure or maintenance of erythrocytes or oxygen-transporting material in the blood" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal erythrocyte" EXACT []
synonym: "hematology: abnormal red blood cell count/anemia" EXACT []
xref: MGI:2173584
is_a: MT:0000245 ! erythropoiesis

[Term]
id: MT:0002127
name: cardiovascular system morphology
namespace: Trait.ontology
alt_id: MT:0000177
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the heart or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
relationship: part_of MT:0005385 ! cardiovascular system trait

[Term]
id: MT:0002132
name: respiratory system morphology
namespace: Trait.ontology
alt_id: MT:0001174
def: "anomalous structure of pulmonary tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "respiratory system abnormalities" EXACT []
synonym: "respiratory system: dysmorphology" EXACT []
xref: MGI:2173592
is_a: MT:0005388 ! respiratory system trait

[Term]
id: MT:0002138
name: liver/biliary system morphology
namespace: Trait.ontology
alt_id: MT:0002172
def: "structural abnormality or aberrant development of any of the tissues of the liver or biliary system" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_chkn
subset: slim_pig
synonym: "hepatic system abnormalities" EXACT []
synonym: "hepatic system defects" EXACT []
synonym: "liver/hepatic system: dysmorphology" EXACT []
xref: MGI:2173598
is_a: MT:0005370 ! liver/biliary system trait

[Term]
id: MT:0002160
name: reproductive system morphology
namespace: Trait.ontology
alt_id: MT:0001114
alt_id: MT:0001115
def: "structural or developmental anomaly of any of the tissues involved in the reproductive system" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal reproductive anatomy" EXACT []
synonym: "abnormal reproductive system" EXACT []
synonym: "reproductive system abnormalities" EXACT []
synonym: "reproductive system defects" EXACT []
synonym: "reproductive system: dysmorphology" EXACT []
xref: MGI:2173620
is_a: MT:0005389 ! reproductive system trait

[Term]
id: MT:0002161
name: fertility/fecundity
namespace: Trait.ontology
alt_id: MT:0001920
def: "reduced ability or inability to produce live offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal fecundity" EXACT []
synonym: "reproductive system: fertility/fecundity anomalies" EXACT []
xref: MGI:2173621
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0002210
name: sex determination
namespace: Trait.ontology
alt_id: MT:0001936
def: "anomaly of primary or secondary sexual development or characteristics" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal reproductive system development" EXACT []
synonym: "abnormal sexual differentiation" EXACT []
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0002212
name: secondary sex determination
namespace: Trait.ontology
def: "gonadal development may or may not be normal, and the phenotype of the animal outside the gonad does not match chromosomal sex or is ambiguous" [llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002210 ! sex determination

[Term]
id: MT:0002221
name: lymph organ size
namespace: Trait.ontology
def: "change in the normal size of lymphatic tissues" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0002722 ! immune system organ morphology

[Term]
id: MT:0002224
name: spleen size
namespace: Trait.ontology
def: "deviation from the normal spleen size" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0000689 ! spleen morphology
is_a: MT:0002221 ! lymph organ size

[Term]
id: MT:0002269
name: muscle size
namespace: Trait.ontology
def: "a wasting of muscle tissue resulting in a derangement of the muscle fibers; occurs with age, immobilization, weightlessness, malnutrition or denervation" [cml:Cathleen M. Lutz_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "muscle atrophy" EXACT []
is_a: MT:0002108 ! muscle morphology

[Term]
id: MT:0002396
name: hematopoietic system morphology/development
namespace: Trait.ontology
def: "any structural or developmental anomaly of the blood cells or the organs associated with the development and formation of blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood morphology" EXACT []
synonym: "abnormal hemopoietic system morphology/development" EXACT []
synonym: "hematopoietic organ abnormalities" EXACT []
is_a: MT:0005397 ! hematopoietic system trait

[Term]
id: MT:0002429
name: blood cell morphology/development
namespace: Trait.ontology
alt_id: MT:0000178
alt_id: MT:0000205
alt_id: MT:0001576
alt_id: MT:0002545
def: "anomalous structure, differentiation, or number of any of the cells found in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "blood cell abnormalities" EXACT []
synonym: "blood cell defects" EXACT []
is_a: MT:0002396 ! hematopoietic system morphology/development

[Term]
id: MT:0002557
name: social/conspecific interaction
namespace: Trait.ontology
alt_id: MT:0001351
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal social behavior" EXACT []
synonym: "abnormal socialization" EXACT []
synonym: "neurological/behavioral: social/conspecific interaction anomalies" EXACT []
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002572
name: emotion/affect behavior
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002596
name: hematocrit
namespace: Trait.ontology
alt_id: MT:0000206
alt_id: MT:0001578
def: "greater or less than the average percentage of a volume of a blood sample occupied by red blood cells" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
synonym: "hematocrit traits" EXACT []
synonym: "packed cell volume" EXACT []
is_a: MT:0002124 ! red blood cell

[Term]
id: MT:0002644
name: circulating triglyceride level
namespace: Trait.ontology
alt_id: MT:0005143
def: "lower than normal concentration of triacylglycerols in the blood" [pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "low plasma triacylglycerol level" EXACT []
synonym: "low plasma triglyceride level" EXACT []
synonym: "low serum triacylglycerol level" EXACT []
synonym: "low serum triglyceride level" EXACT []
is_a: MT:0000187 ! triglyceride level
is_a: MT:0003949 ! circulating lipid level

[Term]
id: MT:0002673
name: sperm count
namespace: Trait.ontology
def: "increased or decreased numbers of spermatozoa" [pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal sperm number" EXACT []
is_a: MT:0001929 ! gametogenesis

[Term]
id: MT:0002674
name: sperm motility
namespace: Trait.ontology
def: "anomalies in the mobility of the spermatozoa" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001929 ! gametogenesis

[Term]
id: MT:0002683
name: onset of fertility
namespace: Trait.ontology
def: "age at which animals develop the ability to produce live offspring" [llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "age at first breeding" NARROW []
synonym: "age at first egg" NARROW []
synonym: "age at puberty" EXACT []
synonym: "age at sexual maturity" EXACT []
is_a: MT:0001937 ! sexual maturation
is_a: MT:0002161 ! fertility/fecundity

[Term]
id: MT:0002722
name: immune system organ morphology
namespace: Trait.ontology
alt_id: MT:0000686
def: "anomalous structure/organization or development of lymphoid organs" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
synonym: "abnormal lymph organ" EXACT []
synonym: "immune system: organ abnormalities" EXACT []
is_a: MT:0000685 ! immune system morphology

[Term]
id: MT:0002754
name: right ventricle size
namespace: Trait.ontology
def: "the physical dimensions, proportions, magnitude, or extent of the right lower chamber of the heart" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "right ventricular size" RELATED []
relationship: part_of MT:0003920 ! right ventricle morphology
relationship: part_of MT:0005406 ! heart size

[Term]
id: MT:0002773
name: circulating luteinizing hormone level
namespace: Trait.ontology
def: "lower than normal levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [J:35132, MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "decreased serum levels of LH" EXACT []
synonym: "decreased serum levels of luteinizing hormone" EXACT []
synonym: "decreased serum levels of lutropin" EXACT []
is_a: MT:0003361 ! circulating gonadotropin level
is_a: MT:0003969 ! luteinizing hormone level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0002790
name: circulating follicle stimulating hormone level
namespace: Trait.ontology
def: "less than expected blood concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "decreased serum levels of follicle stimulating hormone" EXACT []
synonym: "decreased serum levels of follitropin" EXACT []
synonym: "decreased serum levels of FSH" EXACT []
synonym: "decreased serum levels of gametokinetic hormone" EXACT []
is_a: MT:0003361 ! circulating gonadotropin level
is_a: MT:0003967 ! follicle stimulating hormone level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0002896
name: bone mineralization
namespace: Trait.ontology
def: "defect in the process by which minerals are deposited into bone" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0001533 ! skeleton physiology

[Term]
id: MT:0002972
name: cardiac muscle contractility
namespace: Trait.ontology
def: "ability of the heart muscle to shorten or to develop increased tension, often measured by dP/dT max" [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"]
subset: slim_chkn
is_a: MT:0001544 ! cardiovascular system physiology
is_a: MT:0005620 ! muscle contractility

[Term]
id: MT:0003072
name: metatarsal bone morphology
namespace: Trait.ontology
def: "anomaly in the five bones of the hindpaws that articulate proximally with the cuneiform and cuboid bones of the tarsus and distally with the phalanges" [Anatomy of the Rat:Greene EC_Hafner Publishing Co_1935, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0002115 ! skeleton extremities morphology

[Term]
id: MT:0003107
name: response to novelty
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
is_a: MT:0002572 ! emotion/affect behavior

[Term]
id: MT:0003346
name: pectoral muscle morphology
namespace: Trait.ontology
def: "anomaly in the two muscles that make up the upper and fore part of the chest that adduct and rotate the arm and lift the ribs" [MeSH:National Library of Medicine_Medical Subject Headings, ncbi:Matthew Mailman_NCBI request, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003358
name: hypaxial muscle morphology
namespace: Trait.ontology
def: "malformation of the muscles derived from the lateral myotome and lateral portion of the dermomyotome; these include the thoracic intercostal and abdominal muscles, limb muscles and superficial back muscles, as well as the diaphragm and the tip of the tongue" [PMID:1591996]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal limb muscle morphology" EXACT []
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003361
name: circulating gonadotropin level
namespace: Trait.ontology
def: "aberrant blood concentration of the peptide hormones that stimulate gonadal functions such as gametogenesis and sex steroid hormone production in the ovary and the testis" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0003366
name: circulating glucocorticoid level
namespace: Trait.ontology
def: "aberrant blood concentration of the corticosteroids regulating carbohydrate metabolism and exhibiting anti-inflammatory activity" [ncbi:Matthew Mailman_NCBI request, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0003398
name: skeletal muscle size
namespace: Trait.ontology
def: "greater than average dimensions of one or more of the muscles of the skeleton" [J:94134, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003402
name: liver weight
namespace: Trait.ontology
def: "reduced average weight of the bile-secreting exocrine gland" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
is_a: MT:0000598 ! liver morphology

[Term]
id: MT:0003641
name: lung size
namespace: Trait.ontology
def: "reduced size of the lung relative to normal" [J:95332, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0001175 ! lung morphology

[Term]
id: MT:0003723
name: long bone morphology
namespace: Trait.ontology
def: "malformation of any of the several elongated bones of the extremities" [monikat:Monika Tomczuk_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
is_a: MT:0002115 ! skeleton extremities morphology

[Term]
id: MT:0003920
name: right ventricle morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the right lower chamber of the heart" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "right ventricular morphology" RELATED []
xref: MP:0003920
is_a: MT:0005294 ! heart ventricle morphology

[Term]
id: MT:0003947
name: cholesterol level
namespace: Trait.ontology
def: "anomaly in the concentration in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0001547 ! lipid level
is_a: MT:0005278 ! cholesterol homeostasis

[Term]
id: MT:0003949
name: circulating lipid level
namespace: Trait.ontology
def: "anomalous concentrations of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water) in the blood" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0000179 ! blood chemistry
is_a: MT:0001547 ! lipid level

[Term]
id: MT:0003953
name: hormone level
namespace: Trait.ontology
def: "aberrant tissue or circulating concentration of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0003963
name: corticosterone level
namespace: Trait.ontology
alt_id: MT:0003837
def: "anomalous blood or tissue concentration of this adrenocortical steroid; induces glycogen deposition and regulates sodium conservation and potassium secretion" [smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_chkn
synonym: "abnormal adrenal corticosterone level" EXACT []
is_a: ID:0000671 ! glucocorticoid level

[Term]
id: MT:0003965
name: pituitary hormone level
namespace: Trait.ontology
alt_id: MT:0005125
def: "aberration in the blood or tissue concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003953 ! hormone level

[Term]
id: MT:0003967
name: follicle stimulating hormone level
namespace: Trait.ontology
def: "anomalous concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0003969
name: luteinizing hormone level
namespace: Trait.ontology
def: "aberrant levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal LH level" RELATED []
synonym: "abnormal lutropin level" RELATED []
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0004233
name: muscle weight
namespace: Trait.ontology
def: "any anomaly in the average muscle weight" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002269 ! muscle size

[Term]
id: MT:0004350
name: humerus length
namespace: Trait.ontology
def: "increased length of one or both of the bones of the forelimb that articulates with the scapula above and the radius and ulna below" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0005296 ! humerus morphology

[Term]
id: MT:0004357
name: tibia length
namespace: Trait.ontology
def: "increased length of the medial and larger of the two bones of the lower leg" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0000558 ! tibia morphology

[Term]
id: MT:0005007
name: bone density
namespace: Trait.ontology
def: "abnormal mineral content of bone" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
synonym: "bone density anomalies" EXACT []
is_a: MT:0002896 ! bone mineralization

[Term]
id: MT:0005025
name: response to infection
namespace: Trait.ontology
def: "the body's reaction to invasion and multiplication of microorganisms in its tissues, or the body's reaction to components of or toxins produced by pathogenic microorganisms" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0005116
name: circulating pituitary hormone level
namespace: Trait.ontology
alt_id: MT:0005115
def: "aberration in the blood concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal circulating level of pituitary hormone" EXACT []
synonym: "abnormal serum level of pituitary hormone" EXACT []
is_a: MT:0003965 ! pituitary hormone level
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0005177
name: total circulating cholesterol level
namespace: Trait.ontology
alt_id: MT:0001549
def: "anomalous concentration in the blood of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal total plasma cholesterol level" EXACT []
synonym: "abnormal total serum cholesterol level" EXACT []
is_a: MT:0000180 ! circulating cholesterol level

[Term]
id: MT:0005184
name: circulating progesterone level
namespace: Trait.ontology
def: "aberration in the blood concentration of this antiestrogenic steroid" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal circulating level of progesterone" EXACT []
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0005278
name: cholesterol homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [J:71350, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0002118 ! lipid homeostasis

[Term]
id: MT:0005294
name: heart ventricle morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the lower chamber(s) of the heart" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "cardiac ventricle morphology" RELATED []
synonym: "cardiac ventricular morphology" RELATED []
synonym: "heart ventricular morphology" EXACT []
relationship: part_of MT:0000266 ! cardiac morphology

[Term]
id: MT:0005296
name: humerus morphology
namespace: Trait.ontology
def: "malformation of the bone of the forelimb that articulates with the scapula above and the radius and ulna below" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal humerus" EXACT []
is_a: MT:0003723 ! long bone morphology

[Term]
id: MT:0005319
name: enzyme/ coenzyme level
namespace: Trait.ontology
def: "altered concentration of any of these proteins, or their cofactors, that act as catalysts to induce chemical changes in other substances" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0005334
name: fat pad morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0005345
name: circulating corticosterone level
namespace: Trait.ontology
def: "anomalous blood concentration of this adrenocortical steroid; induces glycogen deposition and regulates sodium conservation and potassium secretion" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_chkn
synonym: "abnormal serum level of corticosterone" EXACT []
is_a: MT:0003366 ! circulating glucocorticoid level
is_a: MT:0003963 ! corticosterone level

[Term]
id: MT:0005369
name: muscle trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005370
name: liver/biliary system trait
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
synonym: "hepatic" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005371
name: limbs/digits/tail trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005375
name: adipose tissue trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "fat" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005376
name: homeostasis/metabolism trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005378
name: growth/size trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005381
name: digestive/alimentary trait
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
synonym: "gastrointestinal" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005385
name: cardiovascular system trait
namespace: Trait.ontology
def: "any measurable or observable characterisitic of the heart and/or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "cardiac" EXACT []
synonym: "circulatory" EXACT []
synonym: "heart" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005386
name: behavior/neurological trait
namespace: Trait.ontology
alt_id: MT:0001350
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005387
name: immune system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005388
name: respiratory system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "lung" EXACT []
synonym: "pulmonary" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005389
name: reproductive system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "reproduction" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005390
name: skeleton trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "bone" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005393
name: skin/coat/nails/feathers trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005397
name: hematopoietic system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "hemopoietic system phenotype" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005406
name: heart size
namespace: Trait.ontology
def: "the physical dimensions, proportions, magnitude, or extent of the cardiac muscle or any of its component structures" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "cardiac size" RELATED []
relationship: part_of MT:0000266 ! cardiac morphology

[Term]
id: MT:0005410
name: fertilization
namespace: Trait.ontology
def: "anomaly in the process beginning with penetration of the secondary oocyte by the spermatozoon and completed by fusion of the male and female pronuclei" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0005416
name: circulating protein level
namespace: Trait.ontology
def: "anomalous blood concentration of any of the macromolecules consisting of long chains of amino acids in peptide linkage" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal protein level" EXACT []
is_a: MT:0000179 ! blood chemistry

[Term]
id: MT:0005418
name: circulating hormone level
namespace: Trait.ontology
def: "anomalous blood concentration of any of the chemical substances that have specific regulatory effects on the activity of a certain organ or organs; originally applied to substances secreted by various endocrine glands and transported in the bloodstream to the target organs, it is sometimes extended to include substances that are not produced by the endocrine glands but that have similar effects" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000179 ! blood chemistry
is_a: MT:0003953 ! hormone level

[Term]
id: MT:0005428
name: clinical chemistry
namespace: Trait.ontology
def: "any anomaly in the laboratory tests that show the presence of physiologically significant substances in the blood, urine, tissue, and body fluids with application to the diagnosis or therapy of disease" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0005452
name: body fat amount
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0005508
name: skeleton morphology
namespace: Trait.ontology
alt_id: MT:0000055
def: "malformation of the bony framework of the body in vertebrates" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal bone/ skeleton" EXACT []
synonym: "bone/ skeletal abnormalities" EXACT []
is_a: MT:0005390 ! skeleton trait

[Term]
id: MT:0005620
name: muscle contractility
namespace: Trait.ontology
def: "aberrant ability of a muscle to shorten or to develop increased tension" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0002106 ! muscle physiology

[Term]
id: MT:0005629
name: lung weight
namespace: Trait.ontology
def: "any change from the normal state in the physical heaviness of the lung" [RGD:Rat Genome Database submission]
subset: slim_chkn
is_a: MT:0003641 ! lung size

[Term]
id: MT:0007028
name: heart weight
namespace: Trait.ontology
def: "mass of the heart times gravity" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "cardiac weight" RELATED []
is_a: MT:0005406 ! heart size

[Term]
id: MT:0007033
name: right ventricle weight
namespace: Trait.ontology
def: "mass of the right lower chamber of the heart times gravity" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "right ventricular weight" RELATED []
relationship: part_of MT:0002754 ! right ventricle size

[Typedef]
id: is_a
name: is a
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig

[Typedef]
id: part_of
name: part_of
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_transitive: true