format-version: 1.2
date: 19:05:2009 10:53
auto-generated-by: OBO-Edit 2.0
subsetdef: slim_cattle "ATO Cattle Slim"
subsetdef: slim_chkn "ATO Chicken Slim"
subsetdef: slim_pig "ATO Pig Slim"
default-namespace: ATO_namespace

[Term]
id: ATO:0000003
name: Immune function trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true

[Term]
id: ATO:0000004
name: product quality
def: "characteristics related to the ability of a product produced by or obtained from the body of an animal to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000701 ! product trait

[Term]
id: ATO:0000005
name: production trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true

[Term]
id: ATO:0000006
name: Reproduction trait
subset: slim_cattle
subset: slim_pig
is_obsolete: true

[Term]
id: ID:0000000
name: conformation
def: "characteristics relating to an organism's overall structure and proportions" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0005395 ! other trait
created_by: caripark
creation_date: 2008-11-10T10:09:36Z

[Term]
id: ID:0000001
name: pigmentation
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:09:36Z

[Term]
id: ID:0000004
name: age
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:09:36Z

[Term]
id: ID:0000005
name: disease resistance
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000006
name: mastitis
def: "inflammation of the parenchyma of the mammary gland" [CP:Cari Park_Iowa State University curator, MeSH:C17.800.090.968, MeSH:C22.196.581]
subset: slim_cattle
relationship: part_of MT:0001881 ! mammary gland physiology
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000007
name: parasite load
def: "number of parasites harbored by an organism" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000675 ! response to parasitic infection
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000008
name: parasite resistance
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000009
name: postchallenge traits
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000010
name: red blood cell mass
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:12:53Z

[Term]
id: ID:0000014
name: carcass trait
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000015
name: egg product quality
def: "characteristics related to the ability of an egg to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ATO:0000004 ! product quality
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000016
name: meat product quality
def: "characteristics related to the ability of meat products to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ATO:0000004 ! product quality
created_by: caripark
creation_date: 2008-11-10T10:20:24Z

[Term]
id: ID:0000017
name: feed intake
def: "Amount of feed consumed" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "feed consumption" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000018
name: lifetime production
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000019
name: milk product quality
def: "characteristics related to the ability of milk to meet certain standards" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ATO:0000004 ! product quality
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000020
name: egg production
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000023
name: feed conversion
def: "measure of an animal's ability to convert feed into additional body mass" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
synonym: "feed efficiency" RELATED []
relationship: part_of MT:0001731 ! postnatal growth rate
relationship: part_of MT:0002121 ! metabolism
created_by: caripark
creation_date: 2008-11-10T10:38:24Z

[Term]
id: ID:0000024
name: endocrine
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000025
name: fertility
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000026
name: life history
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000027
name: reproductive organ
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T10:44:31Z

[Term]
id: ID:0000029
name: 200 day wean weight
def: "Body weight at weaning (approximately 200 days of age)" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000030
name: body weight (400 days)
def: "Body weight at 400 days of age" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000031
name: adjusted weaning weight
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000032
name: adjusted yearling weight
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000033
name: average daily gain
def: "change in body weight over a period of time, divided by the number of days in the period" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001731 ! postnatal growth rate
is_a: MT:0005456 ! weight gain
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000035
name: BWF scaled by BWI
def: "Relative body weight (final body weight/initial body weight)" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000036
name: body weight (initial)
def: "Body weight at the beginning of a test period" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000037
name: lean to fat ratio
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000038
name: body weight (mean)
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000039
name: post-weaning average daily gain
def: "Average daily change in body weight following weaning" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000040
name: post-weaning daily gain--pasture
def: "Average daily change in body weight following weaning in animals maintained on pasture" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000041
name: pre-weaning average daily gain
def: "Average daily change in body weight from birth to weaning" [CP:Cari Park_Iowa State University curator]
comment: Cattle trait.
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T12:52:15Z

[Term]
id: ID:0000042
name: length of productive life
def: "length of time during which a livestock animal can be utilized for breeding or production" [CP:Cari Park_Iowa State University curator]
comment: In dairy cows, the length of time a female is producing milk, prior to the age of 84 months
subset: slim_cattle
subset: slim_pig
synonym: "functional herd life" EXACT []
synonym: "longevity" RELATED []
is_a: MT:0005372 ! life span/aging trait
created_by: caripark
creation_date: 2008-11-10T02:40:05Z

[Term]
id: ID:0000046
name: corticosterone response
def: "Concentration of corticosterone in the blood after manual restraint of a bird.  Used as a measure of acute stress." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000047
name: circulating creatine kinase level
def: "concentration in the blood of the enzyme creatine kinase, which uses ATP to convert creatine to phosphocreatine and ADP; elevated levels are indicative of muscle damage." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
synonym: "creatine kinase concentration" EXACT []
is_a: MT:0001570 ! circulating enzyme level
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000050
name: liver abnormalities
def: "Liver that is lighter in color, has an abnormal surface texture, or both" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000051
name: mean blood cell volume
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000053
name: plasma concentration of cholesterol
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000054
name: plasma concentration of glucose
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000055
name: circulating insulin-like growth factor level
def: "concentration in the blood of insulin-like growth factor (IGF), a polypeptide hormone similar in sequence to insulin" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "plasma concentration of IGF" EXACT []
is_a: MT:0005418 ! circulating hormone level
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000056
name: plasma concentration of insulin
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000057
name: plasma concentration of triglycerides
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000058
name: right ventricular weight as a percentage of body weight
def: "Weight of the right ventricle of the heart divided by total body weight" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000059
name: total heart ventricle morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the lower chambers of the heart" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0005294 ! heart ventricle morphology
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000060
name: troponin T concentration
def: "concentration in the blood of one of a complex of three regulatory proteins required for skeletal and cardiac muscle contraction; used as an indicator for myocardial damage." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0002972 ! cardiac muscle contractility
created_by: caripark
creation_date: 2008-11-10T01:14:43Z

[Term]
id: ID:0000061
name: frame score
def: "A numerical rating of cattle skeletal size calculated based on hip height and age.  Indicates the growth pattern and potential mature size of the animal." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000062
name: chest circumference
def: "circumference of an animal's girth measured posterior to the front legs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "heart girth" EXACT []
relationship: part_of MT:0004134 ! chest morphology
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000063
name: heart length
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000064
name: hip height
def: "height of an animal measured from the ground to a point on the back directly above the hipbones" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "height at sacrum" EXACT []
synonym: "stature" RELATED []
is_a: MT:0001253 ! body height
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000065
name: hook height
def: "height of an animal measured from the ground to the point of the hip (tuber sacrale)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001253 ! body height
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000066
name: hip width
def: "distance between the points of both hips" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "hook width" EXACT []
relationship: part_of MT:0003956 ! body size
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000067
name: udder morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the organ in certain species containing two or more mammary glands, each with its own nipple" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001119 ! female reproductive anatomy
created_by: caripark
creation_date: 2008-11-10T01:17:50Z

[Term]
id: ID:0000068
name: degree of spotting
def: "the proportion of unpigmented skin (white coat color) on an animal's body" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000353 ! spotted coat
created_by: caripark
creation_date: 2008-11-10T01:18:17Z

[Term]
id: ID:0000069
name: percentage decrease in body weight up to day 150 after challenge
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:27:20Z

[Term]
id: ID:0000070
name: white blood cell count
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:27:53Z

[Term]
id: ID:0000071
name: PTA somatic cell score
def: "Predicted transmitting ability for somatic cell score is a measure used to improve mastitis resistance. Bulls with low PTA are expected to have daughters with lower incidence of mastitis than bulls with high PTA." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:29:25Z

[Term]
id: ID:0000072
name: somatic cell count in milk
def: "the number of somatic cells (leukocytes) per milliliter of milk; a high count is an indicator of mastitis." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000006 ! mastitis
relationship: part_of MT:0004047 ! milk composition
created_by: caripark
creation_date: 2008-11-10T01:29:25Z

[Term]
id: ID:0000073
name: somatic cell score
def: "Transformation of the number of somatic cells in milk, used as an indicator of bacterial infection/mastitis.  SCS=ln(SCC/100,000)+3" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:29:25Z

[Term]
id: ID:0000074
name: parasite detection rate
def: "Number of times parasitic infection is detected in an individual following challenge" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:31:27Z

[Term]
id: ID:0000075
name: parasites-mean of natural logarithm
def: "Mean of natural logarithm (ni + 1), ni = number of parasites detected at day i after challenge" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:31:27Z

[Term]
id: ID:0000076
name: susceptibility to gastrointestinal worms
subset: slim_cattle
synonym: "resistance to gastrointestinal worms" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:32:07Z

[Term]
id: ID:0000077
name: susceptibility to metastrongylus
def: "Likelihood that an organism will develop ill effects from infection with nematodes of the genus Metastrongylus" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "resistance to metastrongylus" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:32:07Z

[Term]
id: ID:0000078
name: susceptibility to trypanosomosis
def: "Likelihood that an organism will develop ill effects from infection with parasitic protozoans of the genus Trypanosoma" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "resistance to trypanosomosis" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:32:07Z

[Term]
id: ID:0000079
name: final packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000080
name: initial packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000081
name: minimum packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000082
name: packed red blood cell volume
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000083
name: PCV variance
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000084
name: PCVF
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000085
name: PCVF minus PCVM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000086
name: PCVFM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000087
name: PCVI
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000088
name: PCVI minus PCVF
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000089
name: PCVI minus PCVM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000090
name: PCVM
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000091
name: percentage decrease in PCV up to day 100 after challenge
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000092
name: percentage decrease in PCV up to day 150 after challenge
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:35:08Z

[Term]
id: ID:0000093
name: adjusted fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000094
name: adjusted mature weight
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000095
name: anatomy
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000096
name: body condition score
def: "Scoring system used to estimate energy reserves (fat and muscle) in beef cows.  Scores are based on fat deposition in relation to skeletal features." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000097
name: chemical
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000099
name: fat composition
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000100
name: fat deposition
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000101
name: fatty acid content
def: "Measure of the fatty acids present in a fat sample" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000102
name: meat flavor
def: "characteristics related to the distinctive taste of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000103
name: mature weight
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000104
name: meat color
def: "characteristics related to the color of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000105
name: muscling
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000106
name: meat odor
def: "characteristics related to the distinctive smell of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000107
name: pH
def: "Measurement of muscle pH following slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000108
name: stiffening
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000109
name: meat texture
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000110
name: shear force
def: "Assessment of meat tenderness based on a measurement of the amount of force (kg) required to shear multiple core samples from a cut of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:40:23Z

[Term]
id: ID:0000111
name: bone weight
def: "weight of one or more of the bones of the skeleton" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0003795 ! bone structure
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000112
name: bone yield
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000113
name: carcass dressing
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000114
name: carcass weight
def: "weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001259 ! body weight
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000115
name: carcass yield
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000116
name: dressing percentage
def: "The percentage of the live animal that ends up as carcass (=hot carcass weight/body weight at slaughter)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000117
name: hot carcass weight
def: "hot or un-chilled weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: ID:0000114 ! carcass weight
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000118
name: vertebra number
def: "Number of bone segments constituting the spinal column" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000119
name: rib bone fat
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000120
name: rib muscle thickness
def: "distance between the latissimus muscle and pleura membrane measured halfway between the rib ends" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002280 ! intercostal muscle morphology
created_by: caripark
creation_date: 2008-11-10T01:44:59Z

[Term]
id: ID:0000121
name: number of lumbar vertebrae
def: "number of spinal column segments in the loin area, between the ribs and the pelvis" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000138 ! vertebrae number
relationship: part_of MT:0003049 ! lumbar vertebrae morphology
created_by: caripark
creation_date: 2008-11-10T01:45:36Z

[Term]
id: ID:0000122
name: number of thoracic vertebrae
def: "number of segments in the middle of the spinal column, which articulate with the ribs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000138 ! vertebrae number
relationship: part_of MT:0003047 ! thoracic vertebrae morphology
created_by: caripark
creation_date: 2008-11-10T01:45:36Z

[Term]
id: ID:0000123
name: USDA yield grade
def: "Grade used to classify carcasses based on the expected yield of trimmed, boneless major retail cuts.  Calculation is based on external fat thickness, hot carcass weight, kidney, pelvic, and heart fat, and loin muscle area." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:46:56Z

[Term]
id: ID:0000124
name: backfat
def: "Layer of subcutaneous fat over the back of a pig" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "fatback" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000125
name: fat depth
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000126
name: fat thickness
def: "the thickness of a layer of adipose tissue" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "fat depth" EXACT []
is_a: MT:0005452 ! body fat amount
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000127
name: fat trim yield
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000128
name: fat weight
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000129
name: fat yield
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000130
name: kidney, pelvic, and heart fat weight
def: "weight of fat in the body cavity, specifically in the areas of the kidneys, pelvis, and heart" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "internal fat" EXACT []
is_a: MT:0001781 ! white fat amount
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000131
name: marbling
def: "visible intramuscular fat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of ID:0000016 ! meat product quality
relationship: part_of MT:0000013 ! fat distribution
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000132
name: retail product yield
def: "yield of trimmed retail cuts obtained from a carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000133
name: rib fat weight
def: "weight of fat dissected from a wholesale rib cut" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001781 ! white fat amount
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000134
name: subcutaneous fat
def: "layer of fat lying directly beneath the skin" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000013 ! fat distribution
created_by: caripark
creation_date: 2008-11-10T01:50:29Z

[Term]
id: ID:0000135
name: subcutaneous fat thickness
def: "thickness of the fat layer directly beneath the skin" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: ID:0000126 ! fat thickness
relationship: part_of ID:0000134 ! subcutaneous fat
created_by: caripark
creation_date: 2008-11-10T01:50:57Z

[Term]
id: ID:0000136
name: adjusted subcutaneous fat thickness between 12th and 13th ribs
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:50:57Z

[Term]
id: ID:0000137
name: back subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000138
name: forebelly subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000139
name: hind belly subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000140
name: loin subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000141
name: middle belly subcutaneous fat thickness
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000142
name: shoulder subcutaneous fat thickness
def: "Thickness of the subcutaneous fat on the upper portion of the front leg" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "fat depth at shoulder" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:56:01Z

[Term]
id: ID:0000143
name: % USDA choice
def: "Percentage of animals receiving a USDA quality grade of Choice or higher, based on expected palatability.  Grade is based on degree of marbling and animal's physiological age (maturity)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000144
name: double muscling
def: "Condition caused by mutation of the myostatin (GDF8) gene, which results in significant skeletal muscle hyperplasia and decreased fat deposition" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000145
name: hindquarter muscle weight
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000146
name: longissimus dorsi weight
def: "weight of the longissimus dorsi" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "loin weight" EXACT []
synonym: "longissimus muscle weight" EXACT []
is_a: ID:0000706 ! longissimus dorsi morphology
is_a: ID:0000712 ! skeletal muscle weight
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000149
name: rib muscle weight
def: "weight of muscle tissue obtained from a wholesale rib cut" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002280 ! intercostal muscle morphology
created_by: caripark
creation_date: 2008-11-10T01:59:03Z

[Term]
id: ID:0000150
name: Warner-Bratzler shear force
def: "Measurement of shear force with precisely defined equipment and sample specifications, including cutting blade thickness, shape, and bevel, and diameter of sample cores" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-12-09T01:53:27Z

[Term]
id: ID:0000151
name: LMA
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:40:05Z

[Term]
id: ID:0000152
name: overall wellness/fitness
def: "a measure of the overall healthfulness of an organism, in relation to the frequency with which medical care is required" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "veterinary treatments" NARROW []
is_a: MT:0005395 ! other trait
created_by: caripark
creation_date: 2008-11-10T02:40:05Z

[Term]
id: ID:0000153
name: milk fat
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:40:37Z

[Term]
id: ID:0000154
name: milk protein
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:40:37Z

[Term]
id: ID:0000155
name: milk yield
def: "amount of milk produced over a given period of time by a lactating mammal" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2008-11-10T02:40:37Z

[Term]
id: ID:0000156
name: daughter deviation % milk fat
def: "Weighted average of the percentage of fat in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000157
name: daughter deviation milk fat yield
def: "Weighted average of the amount of fat in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000158
name: milk fat content
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000159
name: milk fat percentage
def: "The percentage of a cow's milk that is made up of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "milk fat content" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000161
name: milk fat content
def: "amount of fat in milk" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "milk fat yield" EXACT []
relationship: part_of ID:0000019 ! milk product quality
relationship: part_of MT:0004047 ! milk composition
created_by: caripark
creation_date: 2008-11-10T02:43:21Z

[Term]
id: ID:0000162
name: daughter deviation % milk protein
def: "Weighted average of the percentage of protein in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000163
name: daughter deviation milk protein yield
def: "Weighted average of the amount of protein in the milk of a bull's daughters, adjusted for the merit of their dams" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000164
name: milk protein percentage
def: "Percentage of milk that is made up of protein" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000165
name: milk protein content
def: "amount of protein in milk" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "milk protein yield" EXACT []
relationship: part_of ID:0000019 ! milk product quality
relationship: part_of MT:0004047 ! milk composition
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000166
name: PTA % milk protein
def: "Predicted transmitting ability for the percentage of milk made up of protein (takes into account information from both parents and progeny)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:45:00Z

[Term]
id: ID:0000167
name: 305 days milk yield
def: "Amount of milk produced by a cow over a 305 day lactation period" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000168
name: 3rd year total milk yield
def: "Total milk produced by a cow during her third lactation" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000169
name: 5th year total milk yield
def: "Total milk produced by a cow during her fifth lactation" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000170
name: average daily milk yield
def: "Average amount of milk produced per day by a cow" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000171
name: milk yield-other
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:46:06Z

[Term]
id: ID:0000172
name: follicle stimulating hormone
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000173
name: gonadrotropin releasing hormone level
def: "level of the peptide hormone that is produced in the hypothalamus and stimulates the release of follicle stimulating hormone and leutenizing hormone from the anterior pituitary gland" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
synonym: "leutenizing hormone releasing hormone level" EXACT []
is_a: MT:0003953 ! hormone level
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000174
name: luteinizing hormone
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000175
name: progesterone
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000176
name: prostaglandins
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:50:56Z

[Term]
id: ID:0000177
name: 56 days non-return rate
def: "The proportion of females that must be re-bred within 56 days following insemination." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000178
name: 90 days non-return rate
def: "The proportion of females that must be re-bred within 90 days following insemination." [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000179
name: abortions
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000180
name: offspring mortality rate
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000181
name: offspring born alive
def: "number of offspring, not including stillborn" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "prenatal survival" EXACT []
synonym: "total number born alive" EXACT []
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000182
name: offspring born alive, %
def: "Percentage of offspring born alive (not stillborn)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000183
name: offspring weaned
def: "number of offspring that survive to weaning" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "% survival to weaning" EXACT []
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000184
name: delivery ease
def: "tendency of an animal to have more or fewer problems at delivery than average" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000186
name: conception rate
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000187
name: dystocia
def: "difficult labor or delivery" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000188
name: early fetal abortion rate
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000189
name: offspring born
def: "total number born, including stillborn animals" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "total number born" EXACT []
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-12-10T10:22:09Z

[Term]
id: ID:0000190
name: oestrus intensity
def: "the ability of the female to display oestrus" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "heat intensity" EXACT []
relationship: part_of MT:0001927 ! oestrous cycle (sensu Rodentia)
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000191
name: hydrops
def: "Accumulation of fluid (edema) in the fetus" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "hydrops fetalis" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000192
name: inseminations per service period
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000193
name: ovulation rate
def: "frequency of ovulation, as determined by the number of corpora lutea in the ovary" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0001928 ! ovulation
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000194
name: parity of dam
def: "Number of times a dam has given birth" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000195
name: pregnancy rate
def: "measure of the ability of a female to become pregnant" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "conception rate" EXACT []
synonym: "non-return rate" EXACT []
relationship: part_of MT:0001921 ! fertility
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000196
name: non-return rate
def: "Proportion of females that must be re-bred following insemination" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-12-16T02:50:41Z

[Term]
id: ID:0000197
name: stillbirth
def: "offspring that are either born dead or die within 24 hours of birth" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000198
name: time of conception
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000199
name: twinning rate
def: "production of two offspring from a single pregnancy" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0002161 ! fertility/fecundity
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000200
name: type of birth
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T02:59:38Z

[Term]
id: ID:0000201
name: development time
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:00:43Z

[Term]
id: ID:0000202
name: PTA type
def: "An estimate of the genetic superiority for conformation that a bull will transmit to its offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:00:43Z

[Term]
id: ID:0000203
name: female measurements
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:01:22Z

[Term]
id: ID:0000204
name: male measurements
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:01:22Z

[Term]
id: ID:0000205
name: teat length
def: "average length of the teats" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0006078 ! nipple morphology
created_by: caripark
creation_date: 2008-11-10T03:02:18Z

[Term]
id: ID:0000206
name: teat number
def: "total number of teats/nipples on a female" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "nipple number" EXACT []
is_a: MT:0006078 ! nipple morphology
created_by: caripark
creation_date: 2008-11-10T03:02:18Z

[Term]
id: ID:0000207
name: accessory sperm
def: "additional spermatazoa retained in the zona pellucida of the oocyte after penetration of the first sperm during fertilization" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0005410 ! fertilization
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000208
name: retrograde sperm
def: "sperm that migrate back into the vagina following intrauterine insemination" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0005410 ! fertilization
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000209
name: retrograde sperm loss
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000210
name: scrotal circumference
def: "circumference of the external sac of skin that encloses the testes" [ISBN:0-683-40008-8 Stedman's Medical Dictionary\, 27th edition]
subset: slim_cattle
relationship: part_of MT:0002669 ! scrotum morphology
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000211
name: sex drive
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000212
name: sperm activity score
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000213
name: sperm counts
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000214
name: sperm quality
subset: slim_cattle
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:03:07Z

[Term]
id: ID:0000216
name: birth assistance
def: "necessity of assistance during delivery of offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000217
name: age at first breeding
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000218
name: age at puberty
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000219
name: structural soundness
def: "Soundness of legs, feet, penis, and prepuce" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:04:56Z

[Term]
id: ID:0000220
name: abdominal fat weight
def: "weight of the fat lining the abdominal cavity and surrounding the kidneys" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "leaf fat weight" EXACT []
is_a: MT:0001781 ! white fat amount
created_by: caripark
creation_date: 2008-11-10T03:41:26Z

[Term]
id: ID:0000221
name: body weight (5 weeks)
def: "Body weight at 5 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:42:21Z

[Term]
id: ID:0000223
name: pectoral muscle weight
def: "combined weight of the pectoralis major and pectoralis minor" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "breast muscle weight" EXACT []
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of MT:0003346 ! pectoral muscle morphology
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000224
name: bursa of Fabricius weight
def: "weight of an epithelial outgrowth of the cloaca in birds where B-lymphocyte maturation occurs" [CP:Cari Park_Iowa State University curator, MeSH:A10.549.175]
subset: slim_chkn
relationship: part_of ID:0000668 ! bursa of Fabricius size
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000225
name: drumstick weight
def: "weight of the hindlimb of a bird, consisting of the tibia and the surrounding meat and skin" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000714 ! product weight
relationship: part_of ID:0000689 ! hindlimb weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000226
name: gizzard weight
def: "weight of the secondary, muscular stomach in some animals used for grinding up food" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000667 ! gizzard morphology
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000227
name: heart weight
def: "Weight of the organ that pumps blood throughout the body" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000228
name: intestine length
def: "Length of the digestive tract" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000229
name: liver weight
def: "Weight of the liver removed from a carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000230
name: lung weight
def: "Weight of the lung removed from a carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000231
name: shank weight
def: "Weight of the part of the leg between the claw and the first joint" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000232
name: skin fat weight
def: "Weight of skin plus attached fat obtained from the breast, leg, and thigh of a chicken" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000233
name: spleen weight
def: "weight of the spleen" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0002224 ! spleen size
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000234
name: thigh muscle weight
def: "weight of the muscle tissue surrounding the femur of the chicken" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of ID:0000235 ! thigh weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000235
name: thigh weight
def: "weight of the part of the chicken consisting of the femur and surrounding meat and skin." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000714 ! product weight
relationship: part_of ID:0000689 ! hindlimb weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000236
name: weight of the front half of the carcass
def: "weight of the front section of the chicken carcass that results when the whole bird is cut perpendicular to the spine at the ilium, just above the femur; it consists of the entire breast, the adjacent back and ribs, and both wings." [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000114 ! carcass weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000237
name: wing weight
def: "weight of the forelimb of a bird, consisting of the humerus, radius, ulna, and metacarpus, and all associated muscle and skin" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000687 ! forelimb weight
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-10T03:45:54Z

[Term]
id: ID:0000238
name: feathering
def: "initial appearance and growth of feathers on young birds" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000664 ! feather morphology
created_by: caripark
creation_date: 2008-11-10T03:46:33Z

[Term]
id: ID:0000239
name: drumstick muscle weight
def: "weight of the muscle tissue surrounding the tibia of the chicken" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of ID:0000225 ! drumstick weight
created_by: caripark
creation_date: 2008-11-10T03:56:45Z

[Term]
id: ID:0000240
name: contrafreeloading
def: "to search for food, even though food is readily available" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0001432 ! food preference
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000241
name: fear-related behavior
def: "behavior observed in response to perceived danger" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002572 ! emotion/affect behavior
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000242
name: feather pecking
def: "gentle, forceful, or aggressive pecking of the other birds in an enclosure" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000243
name: receiving feather pecking
def: "a bird is the recipient of gentle, forceful, or aggressive pecking by the other birds in an enclosure" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000244
name: social tendency
def: "Tendency to choose freely available food or food in combination with social stimuli in a maze test with several options" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2008-11-11T09:38:27Z

[Term]
id: ID:0000245
name: antibody response to x
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000246
name: bacteria count in cecum
def: "bacterial count (cfu) in the outpouching(s) of the large intestine below the entrance of the small intestine" [CP:Cari Park_Iowa State University curator, MeSH:A03.556.124.526.209]
subset: slim_chkn
is_a: ID:0000665 ! bacteria count
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000247
name: bacteria count in cloaca
def: "bacterial count (cfu) in the common cavity into which the intestinal, genital, and urinary tracts open in some species" [CP:Cari Park_Iowa State University curator, ISBN:9780618701728]
subset: slim_chkn
is_a: ID:0000665 ! bacteria count
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000248
name: Marek's disease-related traits
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000249
name: oocyst shedding
def: "presence in the feces of the encapsulated zygote stage of certain protozoans" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000675 ! response to parasitic infection
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000250
name: spleen bacterial burden after challenging with y
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000251
name: time to achieve maximum antibody response
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:47:36Z

[Term]
id: ID:0000252
name: total mortality
def: "Ability of an individual to survive until the end of an experiment" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:48:43Z

[Term]
id: ID:0000253
name: egg albumen height
def: "height of the inner thick albumen (egg white) when an egg is broken onto a flat surface" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000695 ! egg albumen morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000254
name: egg albumen weight
def: "weight of the egg white (weight of the entire egg minus weights of the yolk and shell)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000577 ! egg weight
relationship: part_of ID:0000695 ! egg albumen morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000255
name: egg shell color
def: "objective measurements of egg shell color" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000256
name: egg shell percentage
def: "Percentage of the mass of an egg comprised of shell ([shell weight/total weight] x100)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000257
name: egg shell shape
def: "the ratio of the width of the egg at its widest point to its length at the longest point" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000258
name: egg shell strength
def: "a measure of the force required to fracture the shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000698 ! egg shell physiology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000259
name: egg shell thickness
def: "thickness of the exterior shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000260
name: egg shell weight
def: "weight of the rinsed and dried egg shell" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000577 ! egg weight
relationship: part_of ID:0000696 ! egg shell morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000261
name: Haugh unit
def: "A measure of the internal quality of an egg, taking into account its weight and the height of the albumen (egg white) surrounding the yolk" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000263
name: long length of egg
def: "length of egg from end to end" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000264
name: short length of egg
def: "diameter of egg (shorter dimension)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000265
name: egg specific gravity
def: "ratio of the weight of an egg to the weight of an equal volume of water; an indicator of eggshell thickness" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000266
name: egg yolk weight
def: "weight of the yolk of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000577 ! egg weight
relationship: part_of ID:0000697 ! egg yolk morphology
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000267
name: yolk index
def: "The height of the yolk of a broken egg divided by the yolk diameter" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T09:55:05Z

[Term]
id: ID:0000268
name: color of the breast
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000269
name: white meat weight
def: "combined weight of the breast (pectoralis major and pectoralis minor) and wing meat; back muscle weight may or may not be included" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000270
name: egg shell redness
def: "chromatic component of egg shell color from green to red (a*)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000255 ! egg shell color
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000271
name: egg shell lightness
def: "luminance or lightness component of egg shell color (L*)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000255 ! egg shell color
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000272
name: egg shell yellowness
def: "chromatic component of egg shell color from blue to yellow (b*)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000255 ! egg shell color
created_by: caripark
creation_date: 2008-11-11T10:15:31Z

[Term]
id: ID:0000273
name: total blood cell count
def: "number of red and white blood cells" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0002429 ! blood cell morphology/development
created_by: caripark
creation_date: 2008-11-11T10:27:07Z

[Term]
id: ID:0000274
name: bone mineral content
def: "mineral content of a bone, as determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0002896 ! bone mineralization
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000275
name: bone mineral density
def: "The mineral content of a bone, adjusted for the bone's size" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000277
name: humerus bone mineral content
def: "mineral content of the humerus, as determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000274 ! bone mineral content
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000278
name: humerus bone density
def: "the mineral content of the humerus, adjusted for the bone's size" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "humerus bone mineral density" EXACT []
relationship: part_of MT:0005007 ! bone density
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000281
name: tibia area
def: "area of the tibia, calculated based on the length and width determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0000558 ! tibia morphology
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000282
name: tibia bone mineral content
def: "mineral content of the tibia, as determined by x-ray densitometric scanning" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000274 ! bone mineral content
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000283
name: tibia bone density
def: "the mineral content of the tibia, adjusted for the bone's size" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "tibia bone mineral density" EXACT []
relationship: part_of MT:0005007 ! bone density
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000284
name: tibia breaking force
def: "the amount of force required to break the tibia in the middle, while it is supported on both ends" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000285
name: tibia length
def: "Length of the tibia from end to end" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000286
name: tibia modulus of elasticity
def: "a measure of the tibia's ability to return to its original shape after force is applied in the center, while the bone is supported on the ends (stress:strain ratio)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000287
name: tibia strain
def: "an indicator of the amount of bending the tibia undergoes when force is applied in the center, and the bone is supported at both ends (change in length per unit length of bone)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000288
name: tibia stress
def: "force applied to the tibia per unit area" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0001542 ! bone strength
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000289
name: tibia width
def: "width of the tibia halfway between the ends" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of MT:0000558 ! tibia morphology
created_by: caripark
creation_date: 2008-11-11T10:32:08Z

[Term]
id: ID:0000290
name: age at first egg
def: "Age at which a bird lays its first egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000291
name: annual egg production
def: "Eggs laid by a bird in a year" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000292
name: egg production rate
def: "number of eggs laid by a bird divided by the number of days over which they are produced" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "eggs laid per day" EXACT []
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000294
name: number of eggs produced
def: "number of eggs produced over a given period of time" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000296
name: body weight (final)
def: "Animal's body weight at the end of a defined test period" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
synonym: "test end body weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:43:29Z

[Term]
id: ID:0000297
name: feed efficiency
def: "Ratio of body weight gain to amount of feed consumed" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:46:34Z

[Term]
id: ID:0000298
name: conformation score
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T10:50:00Z

[Term]
id: ID:0000299
name: weight loss during transport
def: "difference in body weight before and after transport" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0001263 ! weight loss
created_by: caripark
creation_date: 2008-11-11T10:51:51Z

[Term]
id: ID:0000300
name: average daily gain (10-22 weeks)
def: "Average daily change in body weight from 10 to 22 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000301
name: average daily gain (18-26 weeks)
def: "Average daily change in body weight from 18 to 26 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000302
name: average daily gain (3-5 weeks)
def: "Average daily change in body weight from 3 to 5 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000303
name: average daily gain (3-10 weeks)
def: "Average daily change in body weight from 3 to 10 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000304
name: average daily gain (4-13 weeks)
def: "Average daily change in body weight from 4 to 13 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000305
name: average daily gain (5-7 weeks)
def: "Average daily change in body weight from 5 to 7 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000306
name: average daily gain (60-160 days)
def: "Average daily change in body weight from 60 to 160 days of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000307
name: average daily gain (7-9 weeks)
def: "Average daily change in body weight from 7 to 9 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000308
name: average daily gain (8-18 weeks)
def: "Average daily change in body weight from 8 to 18 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000309
name: average daily gain (birth to 3 weeks)
def: "Average daily change in body weight from birth to 3 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000310
name: average daily gain (birth to 60 days)
def: "Average daily change in body weight from birth to 60 days of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000311
name: average daily gain (25-90 kg)
def: "Average daily change in body weight between the weights of 25 and 90 kg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000312
name: average daily gain (35-55 kg)
def: "Average daily change in body weight between the weights of 35 and 55 kg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000313
name: average daily gain (55-80 kg)
def: "Average daily change in body weight between the weights of 55 and 80 kg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000314
name: average daily gain (birth to 30 kg)
def: "Average daily change in body weight from birth to 30 kg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000315
name: average daily gain (birth to 70 kg)
def: "Average daily change in body weight from birth to 70 kg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000316
name: average daily gain (birth to end of test)
def: "Average daily change in body weight from birth to the end of a test period" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000317
name: average daily gain (entire life)
def: "Average daily change in body weight from birth to slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000318
name: average daily gain on test
def: "Average daily change in body weight during a test period" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000319
name: average daily gain on weaning
def: "Average daily change in body weight from birth to weaning" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "pre-weaning average daily gain" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000320
name: average daily gain (weaning to 25 kg)
def: "Average daily change in body weight from weaning to 25 kg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000321
name: average daily gain (weaning to 55 kg)
def: "Average daily change in body weight from weaning to 55 kg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:42:29Z

[Term]
id: ID:0000322
name: age at slaughter
def: "age of an animal at the time of slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0001661 ! life span
created_by: caripark
creation_date: 2008-11-11T12:43:08Z

[Term]
id: ID:0000323
name: body weight (10 weeks)
def: "Body weight at 10 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000324
name: body weight (13 weeks)
def: "Body weight at 13 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000325
name: body weight (16 days)
def: "Body weight at 16 days of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000326
name: body weight (17 weeks)
def: "Body weight at 17 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000328
name: body weight (22 weeks)
def: "Body weight at 22 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000329
name: body weight (25 weeks)
def: "Body weight at 25 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000330
name: body weight (26 weeks)
def: "Body weight at 26 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000331
name: body weight (3 weeks)
def: "Body weight at 3 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000332
name: body weight (30 days)
def: "Body weight at 30 days of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000333
name: body weight (35 days)
def: "Body weight at 35 days of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000334
name: body weight (4 weeks)
def: "Body weight at 4 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000335
name: body weight (60 days)
def: "Body weight at 60 days of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000336
name: body weight (8 weeks)
def: "Body weight at 8 weeks of age" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000337
name: body weight (birth)
def: "Body weight at birth" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "birth weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000338
name: body weight (slaughter)
def: "Body weight at slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000339
name: body weight (weaning)
def: "Body weight at weaning" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "weaning weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:48:27Z

[Term]
id: ID:0000340
name: longevity
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:52:40Z

[Term]
id: ID:0000341
name: basal circulating adrenocorticotropin level
def: "level of pituitary adrenocorticotropic hormone in the blood in the absence of an external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002664 ! circulating adrenocorticotropin level
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000342
name: post-stress ACTH level
def: "Level of pituitary adrenocorticotropic hormone in the blood at the end of a stress test" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000343
name: basal circulating cortisol level
def: "level of cortisol in the blood in the absence of external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "basal circulating hydrocortisone level" EXACT []
is_a: ID:0000670 ! circulating cortisol level
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000344
name: basal circulating glucose level
def: "level of glucose in the blood in the absence of external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0000188 ! circulating glucose level
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000345
name: exploration
def: "Time spent rooting or sniffing the sides or floor of the arena during a stress test" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000346
name: locomotion
def: "The extent of movement during a stress test, measured by the number of sections (marked on the floor) the animal enters in an unfamiliar area" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000347
name: induced circulating glucose level
def: "level of glucose in the blood in response to an external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0000188 ! circulating glucose level
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000348
name: glucose level variations
def: "Difference between post-stress and basal levels of glucose in the blood" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000349
name: neuroendocrine response
def: "alterations in the levels of adrenocorticotropic hormone, glucose, and cortisol in response to stress" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0002164 ! gland physiology
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000350
name: induced circulating cortisol level
def: "level of cortisol in the blood in response to external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "induced circulating hydrocortisone level" EXACT []
is_a: ID:0000670 ! circulating cortisol level
created_by: caripark
creation_date: 2008-11-11T12:58:57Z

[Term]
id: ID:0000351
name: black vs. white coat color
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:01:13Z

[Term]
id: ID:0000353
name: spotted coat
def: "presence of spots on an animal's coat" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0002075 ! coat color
created_by: caripark
creation_date: 2008-11-11T01:01:13Z

[Term]
id: ID:0000355
name: scrotal hernia
def: "an inguinal hernia that has passed into the scrotum" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0002669 ! scrotum morphology
created_by: caripark
creation_date: 2008-11-11T01:10:14Z

[Term]
id: ID:0000357
name: joint abnormalities
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:10:14Z

[Term]
id: ID:0000358
name: joint lesions
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:10:14Z

[Term]
id: ID:0000359
name: osteochondrosis
def: "a class of joint diseases characterized by interruption of a bone's blood supply and bone necrosis, followed by bone regrowth" [CP:Cari Park_Iowa State University curator, MeSH:C05.116.821]
subset: slim_pig
relationship: part_of MT:0003795 ! bone structure
created_by: caripark
creation_date: 2008-11-11T01:10:14Z

[Term]
id: ID:0000361
name: circumference of cannon bone
def: "circumference of the metacarpal or metatarsal bone, between the knee or hock and the fetlock" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0000550 ! forelimb morphology
relationship: part_of MT:0000556 ! hindlimb morphology
relationship: part_of MT:0003072 ! metatarsal bone morphology
relationship: part_of MT:0003073 ! metacarpal bone morphology
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000362
name: length of claws (front inside)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000363
name: length of claws (front outside)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000364
name: length of claws (hind inside)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000365
name: length of claws (hind outside)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000366
name: feet and legs score
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000367
name: feet score (front)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000368
name: feet score (hind)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000369
name: femur dimensions
def: "measurements relating to the size of the long bone of the thigh" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0000559 ! femur morphology
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000370
name: hair (amount)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000372
name: leg length
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000373
name: leg pastern (front)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000374
name: leg pastern (hind)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000375
name: leg score (front)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000376
name: leg score (hind)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000377
name: leg set view
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000378
name: leg torsion (front)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000379
name: leg torsion (hind)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000380
name: leg angularity (front)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000381
name: leg angularity (hind)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000382
name: lob ear
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000383
name: nose score
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:13:23Z

[Term]
id: ID:0000384
name: vertebrae distance
def: "distance from first thoracic to last lumbar vertebra" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0000137 ! vertebrae morphology
created_by: caripark
creation_date: 2008-11-11T01:14:37Z

[Term]
id: ID:0000385
name: total vertebrae number
def: "total number of bone segments constituting the spinal column" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0000138 ! vertebrae number
created_by: caripark
creation_date: 2008-11-11T01:16:14Z

[Term]
id: ID:0000386
name: induced circulating IgG level
def: "level of serum immunoglobulin G in response to an external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0001805 ! circulating IgG level
created_by: caripark
creation_date: 2008-11-11T01:40:12Z

[Term]
id: ID:0000387
name: anti-O149 E. coli IgG level response
def: "Change in serum levels of E. coli O149 IgG following immunization with E. coli antigens" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:40:12Z

[Term]
id: ID:0000388
name: anti-O149 E. coli IgG levels
def: "Level of serum IgG to E. coli O149 antigen" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:40:12Z

[Term]
id: ID:0000389
name: susceptibility to E. coli K88 infection
def: "Likelihood that an organism will develop ill effects from infection with Escherichia coli expressing K88 antigen" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "resistance to E. coli K88 infection" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:40:12Z

[Term]
id: ID:0000390
name: susceptibility to pseudorabies viral infection
def: "Likelihood that an organism will develop ill effects from infection with pseudorabies virus (suid herpesvirus-1, porcine herpesvirus 1)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "resistance to pseudorabies viral infection" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:40:12Z

[Term]
id: ID:0000391
name: susceptibility to E. coli F18 infection
def: "Susceptibility to infection by F18-positive E. coli due to the expression of ECF18R alleles in the small intestine" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "small intestinal E. coli F18 receptor" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:40:12Z

[Term]
id: ID:0000392
name: conA-induced lymphocyte proliferation
def: "proliferation of lymphocytes upon stimulation with concanavalin A, a lectin isolated from the jack bean, Canavalia ensiformis" [CP:Cari Park_Iowa State University curator, MeSH:D12.776.503.499.500 "National Library of Medicine - Medical Subject Headings"]
subset: slim_pig
is_a: ID:0000393 ! mitogen-induced lymphocyte proliferation
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000393
name: mitogen-induced lymphocyte proliferation
def: "proliferation of lymphocytes upon stimulation with a protein that induces cell division" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000661 ! lymphocyte proliferation
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000394
name: pokeweed mitogen (PWM)-induced lymphocyte proliferation
def: "proliferation of lymphocytes upon stimulation with pokeweed mitogen, a lectin isolated from the roots of Phytolacca americana" [CP:Cari Park_Iowa State University curator, MeSH:D12.776.503.499.875 "National Library of Medicine - Medical Subject Headings"]
subset: slim_pig
is_a: ID:0000393 ! mitogen-induced lymphocyte proliferation
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000395
name: post-stress mitogen-induced IL-2 activity
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000396
name: pre-/post-vaccination levels of IgG to K88 antigen
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000397
name: specific IgG response to E. coli O149 antigen
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000398
name: spontaneous lymphocyte proliferation
def: "unstimulated proliferation of lymphocytes" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000661 ! lymphocyte proliferation
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000399
name: stress-induced leukocyte proliferation
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000400
name: stress-induced neutrophil number alteration
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:50:35Z

[Term]
id: ID:0000401
name: muscle androstenone level
def: "amount of the testicular steroid androstenone detected in muscle via ELISA or HPLC" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000402
name: fecal bacteria count
def: "bacterial count (cfu) in feces" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000665 ! bacteria count
created_by: caripark
creation_date: 2008-11-11T01:54:41Z

[Term]
id: ID:0000403
name: salmonella count in feces (day 7 post-infection)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T01:54:41Z

[Term]
id: ID:0000404
name: bacteria count in liver
def: "bacterial count (cfu) in liver" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000665 ! bacteria count
created_by: caripark
creation_date: 2008-11-11T01:54:41Z

[Term]
id: ID:0000405
name: bacteria count in spleen
def: "bacterial count (cfu) in spleen" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000665 ! bacteria count
created_by: caripark
creation_date: 2008-11-11T01:54:41Z

[Term]
id: ID:0000406
name: cold carcass weight
def: "weight of a carcass that has been chilled overnight following slaughter and removal of the head, hide, intestinal tract, and internal organs" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000114 ! carcass weight
created_by: caripark
creation_date: 2008-11-11T01:57:31Z

[Term]
id: ID:0000407
name: belly percentage
def: "Weight of the cut of meat from the underside of the pig divided by the weight of the carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000408
name: belly weight
def: "weight of the cut of meat obtained from the underside of the pig" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000410
name: bone percent
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000411
name: carcass length
def: "length of the carcass following removal of the head; typically measured between the first or second cervical vertebra or the first rib and the pelvis" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0001256 ! body length
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000412
name: carcass thickness
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000413
name: glycogen content
def: "Concentration in muscle of the glucose polysaccharide used for short-term energy storage" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000414
name: diaphragm weight
def: "weight of the muscle that separates the thoracic and abdominal cavities" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0002279 ! diaphragm morphology
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000415
name: glycolytic potential
def: "measure of the available glycogen stores in tissue = 2 x ([glycogen]+[glucose]+[glucose-6-phosphate])+[lactate]" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000694 ! muscle glycogen homeostasis
relationship: part_of MT:0005438 ! glycogen homeostasis
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000416
name: estimated carcass lean content
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000418
name: fat-cut percentage
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000419
name: total foot weight
def: "weight of the front feet separated from the carcass at the level of the carpal bones, and the hind feet removed at the tibio-tarsal joint" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000686 ! paw/hand/foot/hoof weight
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000420
name: head weight
def: "weight of the head, separated from the carcass at the second cervical vertebra" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0000002 ! head size
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000421
name: small intestine length
def: "length of the upper portion of the digestive tract, between the stomach and the large intestine" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0000496 ! small intestine morphology
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000422
name: shoulder weight
def: "weight of the untrimmed cut of meat from the upper portion of the front leg of the pig" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000714 ! product weight
relationship: part_of ID:0000687 ! forelimb weight
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000423
name: skin percentage
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000424
name: skin thickness
def: "Thickness of skin on the back, at the midpoint of body length" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000425
name: skin weight
def: "weight of the membranous protective covering of the body; may include closely associated fat" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
relationship: part_of MT:0002060 ! skin morphology
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000426
name: weight of trimmed wholesale product
def: "weight of four major wholesale cuts of the pig (ham, loin, Boston butt, and picnic shoulder), trimmed of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000427
name: trimmed wholesale product/live weight
def: "Weight of four major wholesale cuts of the pig (ham, loin, Boston butt, and picnic shoulder) trimmed of fat and adjusted to a constant live weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:01:04Z

[Term]
id: ID:0000429
name: muscle lactate level
def: "concentration in muscle of the compound produced from pyruvate by lactate dehydrogenase" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000430
name: muscle cholesterol level
def: "amount of cholesterol present in the total lipid extracted from a muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0003947 ! cholesterol level
relationship: part_of ID:0000479 ! muscle lipid level
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000431
name: muscle indole level
def: "amount of a tryptophan degradation product detected in muscle via HPLC" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000432
name: muscle water content
def: "amount of moisture in a muscle sample, determined by the difference in weight before and after oven drying" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0000676 ! water content
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000433
name: muscle protein level
def: "total protein content of muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000434
name: muscle skatole level
def: "amount of a tryptophan degradation product detected in muscle via HPLC or colorimetric assay" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "3-methyl indole concentration" EXACT []
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T02:26:46Z

[Term]
id: ID:0000435
name: muscle conductivity
def: "ability of muscle to conduct electrical current" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T02:27:18Z

[Term]
id: ID:0000436
name: skeletal muscle conductivity
def: "ability of skeletal muscle to conduct electrical current" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000435 ! muscle conductivity
created_by: caripark
creation_date: 2008-11-11T02:29:54Z

[Term]
id: ID:0000437
name: conductivity (45 min post-mortem)
def: "Electrical conductivity of muscle 45 minutes post-mortem" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:29:54Z

[Term]
id: ID:0000440
name: fatty acid carbon chain length
def: "average number of carbon atoms in the fatty acids in a sample, determined by gas chromatography" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0005666 ! adipose tissue physiology
created_by: caripark
creation_date: 2008-11-11T02:37:42Z

[Term]
id: ID:0000441
name: double-bond index
def: "Sum of the percentage of fatty acids in a fat sample with any number of double bonds, multiplied by the number of double bonds, with the total divided by 100" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:37:42Z

[Term]
id: ID:0000444
name: fat androstenone level
def: "amount of the testicular steroid androstenone detected in fat samples via ELISA" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0005666 ! adipose tissue physiology
created_by: caripark
creation_date: 2008-11-11T02:37:42Z

[Term]
id: ID:0000452
name: peroxidability index
def: "Calculated from fatty acid percentage of a fat sample: [(% monoenoic x 0.025) + (% dienoic) + (% trienoic x 2) + (% tetraenoic x 4) + (% pentaenoic x 6) + (% hexaenoic x8)]" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:37:42Z

[Term]
id: ID:0000454
name: unsaturated index
def: "Equal to double bond index/percentage of saturated fatty acids in a fat sample" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:37:42Z

[Term]
id: ID:0000455
name: fat androstenone level (100 days of age)
def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (100 days of age)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:38:46Z

[Term]
id: ID:0000456
name: fat androstenone level (120 days of age)
def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (120 days of age)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:38:46Z

[Term]
id: ID:0000457
name: fat androstenone level (140 days of age)
def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (140 days of age)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:38:46Z

[Term]
id: ID:0000458
name: fat androstenone level (160 days of age)
def: "Amount of the testicular steroid androstenone detected in backfat biopsies via ELISA (160 days of age)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:38:46Z

[Term]
id: ID:0000459
name: abdominal fat
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:41:11Z

[Term]
id: ID:0000460
name: fat area
def: "Area of fat on M. Lattisimus Dorsi between the 13th and 14th ribs" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000461
name: fat cuts
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000462
name: fat percentage in carcass
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000463
name: fat ratio (percentage)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000464
name: fat-to-meat ratio
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000465
name: intermuscular fat weight
def: "weight of fat present between the muscles" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "seam fat weight" EXACT []
is_a: MT:0001781 ! white fat amount
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000466
name: internal fat ratio
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000467
name: intestinal fat percent
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000468
name: intestinal fat weight
def: "weight of the fat associated with the small intestine" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "caul fat" EXACT []
is_a: MT:0001781 ! white fat amount
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000469
name: backfat depth
def: "Depth of subcutaneous fat (including skin) at a point on the animal's back" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:58:47Z

[Term]
id: ID:0000470
name: leaf fat percentage
def: "Weight of the fat lining the abdominal cavity and surrounding the kidneys, expressed as a percentage of total carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000471
name: leaf fat weight
def: "Weight of the fat lining the abdominal cavity and surrounding the kidneys" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000472
name: subcutaneous fat weight
def: "weight of the fat layer directly under the skin" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0001781 ! white fat amount
relationship: part_of ID:0000134 ! subcutaneous fat
created_by: caripark
creation_date: 2008-11-11T02:48:24Z

[Term]
id: ID:0000473
name: backfat + leaf fat percentage
def: "Sum of subcutaneous backfat and internal fat, expressed as a percentage of total carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000474
name: residual fatty acids
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000475
name: shoulder external fat weight
def: "Weight of the fat trimmed from the cut of meat from the upper portion of the front leg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000476
name: shoulder fat depth
def: "Depth of the subcutaneous fat on the upper portion of the front leg" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000477
name: side fat
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000478
name: total fatty acid level
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000479
name: muscle lipid level
def: "total lipid content of a muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "total lipid" EXACT []
is_a: MT:0002106 ! muscle physiology
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-11T02:47:13Z

[Term]
id: ID:0000480
name: intramuscular fat weight
def: "weight of the fat present within skeletal muscle, determined through either petroleum-ether or detergent extraction or near-infrared transmission analysis" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001781 ! white fat amount
relationship: part_of ID:0000016 ! meat product quality
created_by: caripark
creation_date: 2008-11-11T02:54:44Z

[Term]
id: ID:0000481
name: intramuscular fat percentage
def: "Mass of fat present within skeletal muscle, determined through either petroleum-ether or detergent extraction or near-infrared transmission analysis, expressed as a percentage of muscle weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:54:44Z

[Term]
id: ID:0000482
name: backfat percentage
def: "Weight of subcutaneous fat along the back of the pig, expressed as a percentage of total carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:58:47Z

[Term]
id: ID:0000483
name: backfat weight
def: "Weight of subcutaneous fat along the back of the pig" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T02:58:47Z

[Term]
id: ID:0000484
name: backfat (40 kg live weight)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000485
name: backfat (60 kg live weight)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000486
name: average backfat thickness
subset: slim_pig
synonym: "loin fat depth" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000487
name: backfat above muscle dorsi
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000488
name: backfat at first lumbar
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000489
name: backfat at first rib
def: "Subcutaneous fat thickness on the back at the position of the first rib" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000490
name: backfat at last lumbar
def: "Subcutaneous fat thickness on the back at the position of the last lumbar vertebra" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000491
name: backfat at last rib
def: "Subcutaneous fat thickness on the back at the position of the last rib" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000492
name: backfat at neck
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000493
name: backfat at P2 position
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000494
name: backfat at rump
subset: slim_pig
synonym: "rear backfat" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000495
name: backfat at shoulder
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000496
name: backfat at tenth rib
def: "Subcutaneous fat thickness on the back at the position of the tenth rib" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "loin fat depth" RELATED []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000497
name: backfat between 3rd and 4th rib
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000498
name: backfat between 6th and 7th rib
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000499
name: backfat between 3rd and 4th lumbar
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000500
name: backfat at max. mus. depth
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000501
name: backfat on longissimus dorsi at 12th/14th rib
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000502
name: backfat on longissimus dorsi at 13th/14th rib
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000504
name: backfat side
def: "Subcutaneous fat thickness on the animal's side at the interface of the 13th and 14th ribs" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000505
name: backfat 3 vertebrae beneath last rib
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000506
name: backfat at first rib (14 weeks of age)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:18:14Z

[Term]
id: ID:0000507
name: backfat at mid-back
def: "Subcutaneous fat thickness on the back at the mid-point of the body" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000508
name: FOM backfat depth
def: "Loin fat depth measured by Fat-O-Meater" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "Average backfat" RELATED []
synonym: "Loin fat depth" RELATED []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:14:09Z

[Term]
id: ID:0000510
name: backfat at last rib (14 weeks of age)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:15:39Z

[Term]
id: ID:0000511
name: backfat at last rib (26 weeks of age)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:15:39Z

[Term]
id: ID:0000512
name: backfat at first rib (26 weeks of age)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:18:14Z

[Term]
id: ID:0000513
name: backfat at last lumbar (14 weeks of age)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:19:01Z

[Term]
id: ID:0000514
name: backfat at last lumbar (26 weeks of age)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:19:01Z

[Term]
id: ID:0000515
name: backfat at tenth rib (13 weeks of age)
subset: slim_pig
synonym: "loin fat depth" RELATED []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:20:15Z

[Term]
id: ID:0000516
name: backfat at tenth rib (17 weeks of age)
subset: slim_pig
synonym: "loin fat depth" RELATED []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:20:15Z

[Term]
id: ID:0000517
name: backfat at tenth rib (22 weeks of age)
subset: slim_pig
synonym: "loin fat depth" RELATED []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:20:15Z

[Term]
id: ID:0000518
name: 7-octadecenoic acid level
def: "amount of a monounsaturated fatty acid (C18H34O2), with a carbon-carbon double bond in the n-7 position, present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "7-octadecenoic acid percentage" EXACT []
is_a: MT:0005285 ! unsaturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000519
name: eicosadienoic acid level
def: "amount of an unsaturated fatty acid (C20H36O2), with two carbon-carbon double bonds, present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "eicosadienoic acid percentage" EXACT []
is_a: MT:0005285 ! unsaturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000520
name: eicosenoic acid level
def: "amount of a monounsaturated fatty acid (C20H38O2), with a carbon-carbon double bond in the n-9 position, present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "eicosenoic acid percentage" EXACT []
is_a: MT:0005285 ! unsaturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000521
name: heptadecanoic acid level
def: "amount of a saturated fatty acid (C17H34O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "fatty acid C17:0" EXACT []
synonym: "heptadecanoic acid percentage" EXACT []
synonym: "margaric acid" EXACT []
is_a: MT:0005286 ! saturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000522
name: linoleic acid level
def: "amount of an omega-6 unsaturated fatty acid (C18H32O2), with two carbon-carbon double bonds, present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "linoleic acid percentage" EXACT []
is_a: MT:0005285 ! unsaturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000523
name: linolenic acid level
def: "amount of an omega-3, polyunsaturated fatty acid (C18H30O2), with three carbon-carbon double bonds, present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "alpha-linolenic acid percentage" EXACT []
synonym: "linolenic acid percentage" EXACT []
is_a: MT:0005285 ! unsaturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000524
name: myristic acid level
def: "amount of a saturated fatty acid (C14H28O2), present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "myristic acid percentage" EXACT []
synonym: "tetradecanoic acid percentage" EXACT []
is_a: MT:0005286 ! saturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000525
name: oleic acid level
def: "amount of a monounsaturated, omega-9 fatty acid (C18H34O2), present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "oleic acid percentage" EXACT []
is_a: MT:0005285 ! unsaturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000526
name: palmitic acid level
def: "amount of a saturated fatty acid (C16H32O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "hexadecanoic acid percentage" EXACT []
synonym: "palmitic acid percentage" EXACT []
is_a: MT:0005286 ! saturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000527
name: palmitoleic acid level
def: "amount of an omega-7, monounsaturated fatty acid (C16H30O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "palmitoleic acid percentage" EXACT []
is_a: MT:0005285 ! unsaturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000528
name: stearic acid level
def: "amount of a saturated fatty acid (C18H36O2) present in a sample of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "stearic acid percentage" EXACT []
is_a: MT:0005286 ! saturated fatty acid level
created_by: caripark
creation_date: 2008-11-11T03:26:41Z

[Term]
id: ID:0000529
name: androstenone flavor in meat
def: "perceived urine-like flavor in the meat or fat of some uncastrated male pigs" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000102 ! meat flavor
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000531
name: pork flavor in fat
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000532
name: pork flavor in lean
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000533
name: skatole flavor in meat
def: "perceived manure-like flavor in the meat or fat of some uncastrated male pigs" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000102 ! meat flavor
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000536
name: boar flavor in fat
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000537
name: boar flavor in lean
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000539
name: meat flavor intensity
def: "scoring scale ranging from no flavor to intense flavor" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "flavor score" EXACT []
synonym: "taste intensity" EXACT []
relationship: part_of ID:0000102 ! meat flavor
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000541
name: off-flavor score
def: "Detection of any flavor that cannot be described as \"normal\".  Examples include sour, bitter, earthy, and metallic." [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "abnormal flavor" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000542
name: pork flavor in fat
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000543
name: pork flavor in lean
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:29:36Z

[Term]
id: ID:0000545
name: meat color - chroma
def: "a measure of meat color intensity or saturation, =(a^2+b^2)^0.5" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "saturation index" EXACT []
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000546
name: meat color a
def: "objective measure of meat redness, measured by a colorimeter" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000547
name: meat color b
def: "objective measure of meat yellowness, measured by a colorimeter" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000548
name: meat color L
def: "objective meat color variable for lightness/darkness, based on the amount of light reflected off the surface of the meat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000549
name: meat color score
def: "subjective determination of meat color, on a scale ranging from pale to dark" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000550
name: hematin pigmentation
def: "hematin pigment content in fresh muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "haematin pigmentation" EXACT []
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000551
name: meat color - hue
def: "perceived meat color due to the dominant wavelength reflected=arctan(b/a)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "hue angle" EXACT []
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000552
name: light reflection
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000553
name: meat brightness
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:33:19Z

[Term]
id: ID:0000554
name: bone/lean meat ratio in ham
def: "Weight of ham bone divided by the weight of lean meat in ham" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000555
name: dressing A
def: "Weight of ham meat relative to carcass weight (%)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000556
name: dressing B
def: "Weight of bone-in ham relative to carcass weight (%)" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000557
name: carcass fat-free weight
def: "weight of a carcass following slaughter and removal of the head, hide, intestinal tract, and internal organs, and subtracting the weight of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000114 ! carcass weight
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000558
name: foreloin weight post-dissection
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000559
name: foreloin weight pre-dissection
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000560
name: ham external fat weight
def: "weight of fat trimmed from the surface of the ham" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
xref: CP:Cari Park_Iowa State University curator
relationship: part_of ID:0000563 ! ham weight
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000561
name: ham muscle weight
def: "weight of ham with bone, skin, and fat removed" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "ham meat weight" EXACT []
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of ID:0000563 ! ham weight
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000562
name: ham percent
def: "Weight of the untrimmed ham expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000563
name: ham weight
def: "weight of the untrimmed cut of meat from the hind leg of the pig" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000714 ! product weight
relationship: part_of ID:0000689 ! hindlimb weight
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000564
name: lean cuts
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000565
name: lean mass (weight)
def: "Total weight of the trimmed wholesale meat cuts" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "lean meat weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000566
name: lean meat + bone in back
def: "Weight of meat and bone in the loin (fat removed), expressed as a proportion of carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000567
name: lean meat + bone in ham + back
def: "Total weight of meat and bone in loin and ham, expressed as a proportion of carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000568
name: lean percentage
def: "An estimation of the percentage of lean meat in a carcass, based on various muscle and fat measurements" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000569
name: lean thickness between 3rd and 4th rib
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000570
name: loin and belly cut
def: "Weight of the major wholesale cuts of loin and belly, expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "loin and belly percentage" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000571
name: loin and ham percentage
def: "Weight of the loin and ham, expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000572
name: loin and neck meat weight
def: "Weight of the loin and neck following the removal of external fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000574
name: longissimus muscle area
def: "cross-sectional area of the loin muscle (longissimus dorsi)" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "loin eye area" EXACT []
synonym: "loin muscle area" EXACT []
synonym: "rib eye area" EXACT []
is_a: ID:0000706 ! longissimus dorsi morphology
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000575
name: longissimus muscle depth
def: "the depth/diameter of the longissimus dorsi at a given point" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "eye muscle depth" EXACT []
synonym: "loin height" EXACT []
synonym: "loin muscle depth" EXACT []
is_a: ID:0000706 ! longissimus dorsi morphology
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000576
name: loin percent
def: "Weight of the loin expressed as a percentage of carcass weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000577
name: egg weight
def: "weight of a whole, intact egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2008-12-17T08:24:20Z

[Term]
id: ID:0000578
name: longissimus dorsi length
def: "length of the longissimus dorsi muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "loin length" EXACT []
synonym: "longissimus muscle length" EXACT []
is_a: ID:0000706 ! longissimus dorsi morphology
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000579
name: meat area on longissimus dorsi at 13th/14th rib
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000580
name: muscle + diaphragm weight
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000581
name: muscle weight
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000582
name: shoulder muscle weight
def: "Weight of the cut of meat from the upper portion of the front leg of the pig, trimmed of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "shoulder meat weight" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T03:57:04Z

[Term]
id: ID:0000583
name: loin muscle area at 4th-5th rib
def: "Cross-sectional area of the loin muscle (longissimus dorsi) between the 4th and 5th rib" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:01:52Z

[Term]
id: ID:0000584
name: loin muscle area at the middle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:01:52Z

[Term]
id: ID:0000585
name: FOM loin depth
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:02:23Z

[Term]
id: ID:0000586
name: loin depth at the last ribs
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:02:23Z

[Term]
id: ID:0000587
name: smell intensity (meat)
def: "a subjective score describing the perceived odor intensity of cooked meat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000106 ! meat odor
created_by: caripark
creation_date: 2008-11-11T04:05:30Z

[Term]
id: ID:0000588
name: smell intensity (fat)
def: "a subjective score describing the perceived odor intensity of cooked fat removed from a cut of meat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000106 ! meat odor
created_by: caripark
creation_date: 2008-11-11T04:05:30Z

[Term]
id: ID:0000589
name: sub-acid smell
def: "A subjective score describing the intensity of an acidic or sour odor in cooked meat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:05:30Z

[Term]
id: ID:0000590
name: subjective abnormal odor
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:05:30Z

[Term]
id: ID:0000591
name: meat odor acceptability
subset: slim_pig
synonym: "overall acceptability score" EXACT []
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:05:30Z

[Term]
id: ID:0000592
name: pork odor
subset: slim_pig
relationship: part_of ID:0000106 ! meat odor
created_by: caripark
creation_date: 2008-11-11T04:05:30Z

[Term]
id: ID:0000593
name: pH 24 hr post-mortem (ham)
def: "pH of the semimembranosus muscle 24 hours after slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:09:18Z

[Term]
id: ID:0000594
name: pH 24 hr post-mortem (loin)
def: "pH of the longissimus dorsi muscle 24 hours after slaughter" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:09:18Z

[Term]
id: ID:0000595
name: pH 45 min post-mortem
def: "Muscle pH 45 minutes post-mortem" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:09:18Z

[Term]
id: ID:0000596
name: pH in biceps femoris muscle
def: "relative acidity or alkalinity in the biceps femoris muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000685 ! muscle pH
created_by: caripark
creation_date: 2008-11-11T04:09:18Z

[Term]
id: ID:0000597
name: pH in longissimus dorsi muscle
def: "relative acidity or alkalinity in the longissimus dorsi muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000685 ! muscle pH
created_by: caripark
creation_date: 2008-11-11T04:09:18Z

[Term]
id: ID:0000598
name: pH in semispinalis dorsi muscle
def: "relative acidity or alkalinity in the semispinalis dorsi muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000685 ! muscle pH
created_by: caripark
creation_date: 2008-11-11T04:09:18Z

[Term]
id: ID:0000599
name: pH in semimembranosus muscle
def: "relative acidity or alkalinity in the semimembranosus muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000685 ! muscle pH
created_by: caripark
creation_date: 2008-11-11T04:09:18Z

[Term]
id: ID:0000600
name: rigor mortis
def: "development of muscle rigidity that occurs post-mortem as a result of myosin-actin cross-bridging" [CP:Cari Park_Iowa State University curator, MeSH:C23.550.260.224.617.839]
subset: slim_pig
is_a: MT:0005395 ! other trait
created_by: caripark
creation_date: 2008-11-11T04:11:37Z

[Term]
id: ID:0000601
name: average instron (star probe) force
def: "Amount of force (kg) necessary to puncture and/or compress a cut of cooked meat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000602
name: meat chewiness
def: "evaluation of the total number of chews required to sufficiently break up meat before swallowing" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "chew score" EXACT []
synonym: "chewiness score" EXACT []
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000603
name: cooking loss
def: "decrease in the weight of a cut of meat during cooking, mostly due to moisture loss" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000604
name: skeletal muscle fiber diameter
def: "average diameter of the multinucleated cells in a cross-section of skeletal muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0003399 ! skeletal muscle fiber size
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000605
name: drip loss
def: "fluid lost from fresh, uncooked meat due to passive exudation" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "purge" EXACT []
synonym: "purge loss" EXACT []
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000606
name: myosin isoform type I content
def: "amount of myosin isoform type I present in a muscle sample, as determined by SDS-PAGE" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "fiber type 1 percentage" RELATED []
relationship: part_of ID:0000746 ! skeletal muscle fiber type
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000607
name: myosin isoform type IIa content
def: "amount of myosin isoform type IIa present in a muscle sample, as determined by SDS-PAGE" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000746 ! skeletal muscle fiber type
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000608
name: meat firmness
def: "subjective evaluation of loin firmness following chilling of carcass" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000609
name: meat juiciness
def: "evaluation of the amount of liquid released by a piece of meat during chewing" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "juiciness score" EXACT []
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000610
name: lactate/diameter of white fibers
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000611
name: moisture content
def: "amount of moisture in a cut of meat, determined by the difference in weight before and after oven drying" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000612
name: number of type IIb myofibers
def: "average number of type IIb, fast glycolytic fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "number of white myofibers" EXACT []
relationship: part_of ID:0000746 ! skeletal muscle fiber type
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000613
name: percent cooking loss
def: "Decrease in the weight of a cut of meat during cooking, mostly due to moisture loss (%)." [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000614
name: percentage of white fibers
def: "Number of white (fast-twitch) fibers/total number of fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000615
name: adenosine deamination
def: "degree of deamination of adenosine in muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "R-value" EXACT []
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000616
name: R-value/diameter of white fibers
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000617
name: conformation of feet and legs
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-12-19T12:57:50Z

[Term]
id: ID:0000618
name: meat tenderness
def: "the ease with which meat is broken down during mastication" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
synonym: "tenderness score" EXACT []
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000619
name: water holding capacity
def: "the ability of meat to retain water during cutting, heating, grinding, and pressing." [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000109 ! meat texture
created_by: caripark
creation_date: 2008-11-11T04:15:56Z

[Term]
id: ID:0000620
name: feed conversion ratio
def: "Ratio of amount of feed consumed to body weight gain" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:18:56Z

[Term]
id: ID:0000621
name: feed conversion ratio (35-55 kg)
def: "Ratio of amount of feed consumed to body weight gain between 35 and 55 kg body weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:18:56Z

[Term]
id: ID:0000622
name: feed conversion ratio (55-80 kg)
def: "Ratio of amount of feed consumed to body weight gain between 55 and 80 kg body weight" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:18:56Z

[Term]
id: ID:0000623
name: average daily feed intake
def: "Average amount of feed consumed per day" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:20:49Z

[Term]
id: ID:0000624
name: feed intake (35-55 kg)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:20:49Z

[Term]
id: ID:0000625
name: feed intake (55-80 kg)
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:20:49Z

[Term]
id: ID:0000627
name: thyroid-stimulating hormone
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:21:43Z

[Term]
id: ID:0000628
name: embryo mortality
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:27:06Z

[Term]
id: ID:0000629
name: fully formed pigs
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:27:06Z

[Term]
id: ID:0000630
name: litter weaning weight
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:27:06Z

[Term]
id: ID:0000631
name: mummified pigs
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:27:06Z

[Term]
id: ID:0000632
name: percentage stillborn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:27:06Z

[Term]
id: ID:0000636
name: number of corpora lutea
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:29:40Z

[Term]
id: ID:0000637
name: functional nipples
def: "number of nipples capable of secreting milk in response to suckling by offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0001881 ! mammary gland physiology
created_by: caripark
creation_date: 2008-11-11T04:29:40Z

[Term]
id: ID:0000638
name: uterine capacity
def: "number of viable fetuses a female is capable of supporting to term" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0002637 ! uterus size
created_by: caripark
creation_date: 2008-11-11T04:29:40Z

[Term]
id: ID:0000639
name: uterine horn length
def: "length of the upper right or left portion of the uterus to which the uterine tube is connected" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0002637 ! uterus size
created_by: caripark
creation_date: 2008-11-11T04:29:40Z

[Term]
id: ID:0000640
name: uterine horn weight
def: "weight of the upper right or left portion of the uterus to which the uterine tube is connected" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0002637 ! uterus size
created_by: caripark
creation_date: 2008-11-11T04:29:40Z

[Term]
id: ID:0000641
name: ovary weight
def: "weight of the female reproductive gland containing the germ cells" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 Stedman's Medical Dictionary\, 27th edition]
subset: slim_pig
relationship: part_of MT:0001127 ! ovary size
created_by: caripark
creation_date: 2008-11-11T04:29:40Z

[Term]
id: ID:0000642
name: uterus length
def: "length of the uterus from the top of the uterine body to the cervix" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "uterine length" EXACT []
relationship: part_of MT:0002637 ! uterus size
created_by: caripark
creation_date: 2008-11-11T04:29:40Z

[Term]
id: ID:0000643
name: daily sperm production
def: "average number of sperm produced per day" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0001156 ! spermatogenesis
created_by: caripark
creation_date: 2008-11-11T04:30:44Z

[Term]
id: ID:0000644
name: testes weight
def: "weight of the male reproductive glands" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0001148 ! testes size
created_by: caripark
creation_date: 2008-11-11T04:30:44Z

[Term]
id: ID:0000645
name: adjusted birthing rate
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000646
name: age at delivery
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000647
name: age at breeding
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000648
name: average breeding female inventory
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000649
name: birth interval
def: "time interval between birth of consecutive offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_pig
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000650
name: birth duration
def: "duration of delivery" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0002907 ! parturition
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000651
name: gestation length
subset: slim_cattle
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000652
name: heterogeneity of birth intervals
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000653
name: lactation length
def: "period of time over which milk is produced from the mammary gland" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0001882 ! lactation
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000654
name: log transformation of percentage stillborn
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000655
name: placental efficiency
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000656
name: prenatal survival
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000657
name: vigor score
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000658
name: weight of laparoscopy
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2008-11-11T04:35:38Z

[Term]
id: ID:0000659
name: ACTH level variations
def: "Difference between post-stress and basal levels of pituitary adrenocorticotropic hormone in the blood" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2009-01-09T10:26:05Z

[Term]
id: ID:0000660
name: cortisol level variations
def: "Difference between post-stress and basal levels of cortisol in the blood" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2009-01-09T10:27:17Z

[Term]
id: ID:0000661
name: lymphocyte proliferation
namespace: Trait.ontology
subset: slim_pig
is_a: MT:0000717 ! lymphocyte number
created_by: caripark
creation_date: 2009-02-23T11:12:21Z

[Term]
id: ID:0000662
name: residual feed intake
def: "difference between actual feed intake and the expected feed requirements for maintenance of body weight and for weight gain" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0005449 ! food intake
created_by: caripark
creation_date: 2009-03-06T02:22:41Z

[Term]
id: ID:0000663
name: susceptibility to M. paratuberculosis infection
namespace: Trait.ontology
def: "Likelihood that an organism will be infected with Mycobacterium avium subspecies paratuberculosis, the bacterium that causes Johne's disease in ruminants" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_obsolete: true
created_by: caripark
creation_date: 2009-03-06T02:30:59Z

[Term]
id: ID:0000664
name: feather morphology
namespace: Trait.ontology
subset: slim_chkn
is_a: MT:0005393 ! skin/coat/nails/feathers trait
created_by: caripark
creation_date: 2009-03-10T01:08:34Z

[Term]
id: ID:0000665
name: bacteria count
def: "number of viable bacteria present (cfu)" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_a: ID:0000673 ! response to bacterial infection
created_by: caripark
creation_date: 2009-03-13T11:09:51Z

[Term]
id: ID:0000667
name: gizzard morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the secondary, muscular stomach in some animals used for grinding up food" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0000462 ! digestive system morphology
created_by: caripark
creation_date: 2009-03-30T10:31:57Z

[Term]
id: ID:0000668
name: bursa of Fabricius size
def: "size of an epithelial outgrowth of the cloaca in birds where B-lymphocyte maturation occurs" [CP:Cari Park_Iowa State University curator, MeSH:A10.549.175]
subset: slim_chkn
is_a: MT:0002221 ! lymph organ size
created_by: caripark
creation_date: 2009-03-30T12:56:46Z

[Term]
id: ID:0000669
name: induced circulating adrenocorticotropin level
namespace: Trait.ontology
def: "Level of pituitary adrenocorticotropic hormone in the blood in response to an external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002664 ! circulating adrenocorticotropin level
created_by: caripark
creation_date: 2009-03-30T01:49:48Z

[Term]
id: ID:0000670
name: circulating cortisol level
def: "blood concentration of a steroid hormone secreted by the adrenal cortex which acts as an anti-inflammatory agent" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_pig
synonym: "circulating hydrocortisone level" EXACT []
is_a: ID:0000672 ! cortisol level
is_a: MT:0003366 ! circulating glucocorticoid level
created_by: caripark
creation_date: 2009-03-30T02:24:52Z

[Term]
id: ID:0000671
name: glucocorticoid level
def: "concentration of the corticosteroids regulating carbohydrate metabolism and exhibiting anti-inflammatory activity" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_chkn
subset: slim_pig
is_a: MT:0003953 ! hormone level
created_by: caripark
creation_date: 2009-03-30T02:30:33Z

[Term]
id: ID:0000672
name: cortisol level
def: "concentration of a steroid hormone secreted by the adrenal cortex which acts as an anti-inflammatory agent" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_pig
synonym: "hydrocortisone level" EXACT []
is_a: ID:0000671 ! glucocorticoid level
created_by: caripark
creation_date: 2009-03-30T02:32:44Z

[Term]
id: ID:0000673
name: response to bacterial infection
def: "the body's reaction to invasion and multiplication of bacteria in its tissues, or the body's reaction to components of or toxins produced by bacteria" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
is_a: MT:0005025 ! response to infection
created_by: caripark
creation_date: 2009-03-30T03:33:42Z

[Term]
id: ID:0000675
name: response to parasitic infection
def: "the body's reaction to invasion and multiplication of parasites in its tissues, or the body's reaction to components of or toxins produced by parasites" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0005025 ! response to infection
created_by: caripark
creation_date: 2009-03-30T03:33:42Z

[Term]
id: ID:0000679
name: interleukin-2 physiology
def: "characteristic related to the function of this cytokine released by helper T cells that stimulates proliferation of T lymphocytes and activated B lymphocytes" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_pig
is_a: MT:0002529 ! interleukin physiology
created_by: caripark
creation_date: 2009-03-31T03:12:32Z

[Term]
id: ID:0000680
name: weight loss in response to infection
def: "loss of weight as a result of the invasion and multiplication of microorganisms, or due to the body's reaction to components of or toxins produced by pathogenic microorganisms" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001263 ! weight loss
is_a: MT:0005025 ! response to infection
created_by: caripark
creation_date: 2009-03-31T03:39:50Z

[Term]
id: ID:0000681
name: interleukin-2 activity
def: "activity of this cytokine released by helper T cells that stimulates proliferation of T lymphocytes and activated B lymphocytes" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_pig
is_a: ID:0000679 ! interleukin-2 physiology
created_by: caripark
creation_date: 2009-03-31T03:52:30Z

[Term]
id: ID:0000682
name: induced interleukin-2 activity
def: "activity of interleukin-2 in response to an external intervention" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000681 ! interleukin-2 activity
created_by: caripark
creation_date: 2009-03-31T03:52:54Z

[Term]
id: ID:0000683
name: total heart ventricle size
def: "the physical dimensions, proportions, magnitude, or extent of the lower chambers of the heart" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000059 ! total heart ventricle morphology
created_by: caripark
creation_date: 2009-04-01T03:44:26Z

[Term]
id: ID:0000684
name: total heart ventricle weight
def: "weight of the lower chambers of the heart" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000683 ! total heart ventricle size
created_by: caripark
creation_date: 2009-04-01T03:45:39Z

[Term]
id: ID:0000685
name: muscle pH
def: "relative acidity or alkalinity in the muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
is_a: MT:0004043 ! pH regulation
created_by: caripark
creation_date: 2009-04-01T03:49:05Z

[Term]
id: ID:0000686
name: paw/hand/foot/hoof weight
def: "weight of the pedal or prehensile extremity of vertebrates" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology
created_by: caripark
creation_date: 2009-04-01T04:28:54Z

[Term]
id: ID:0000687
name: forelimb weight
def: "weight of the anterior extremeties" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
relationship: part_of MT:0000550 ! forelimb morphology
created_by: caripark
creation_date: 2009-04-02T08:23:43Z

[Term]
id: ID:0000688
name: metatarsal bone weight
namespace: Trait.ontology
subset: slim_chkn
synonym: "shank weight" NARROW []
relationship: part_of MT:0003072 ! metatarsal bone morphology
created_by: caripark
creation_date: 2009-04-02T11:09:39Z

[Term]
id: ID:0000689
name: hindlimb weight
def: "weight of the posterior extremeties" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
subset: slim_pig
relationship: part_of MT:0000556 ! hindlimb morphology
created_by: caripark
creation_date: 2009-04-02T11:41:35Z

[Term]
id: ID:0000690
name: flavor in meat
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2009-04-02T02:28:53Z

[Term]
id: ID:0000691
name: flavor in fat
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2009-04-02T02:29:20Z

[Term]
id: ID:0000693
name: unsaturated fatty acid content
subset: slim_pig
is_obsolete: true
created_by: caripark
creation_date: 2009-04-02T04:12:49Z

[Term]
id: ID:0000694
name: muscle glycogen homeostasis
def: "state of equilibrium in the body with respect to this readily converted carbohydrate reserve, found in most tissues, especially liver and muscle" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2009-04-03T09:59:55Z

[Term]
id: ID:0000695
name: egg albumen morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the albumen (white) of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:33:39Z

[Term]
id: ID:0000696
name: egg shell morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:33:39Z

[Term]
id: ID:0000697
name: egg yolk morphology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the yolk of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:33:39Z

[Term]
id: ID:0000698
name: egg shell physiology
def: "any measurable characterisic related to the function of the shell of an egg" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000015 ! egg product quality
created_by: caripark
creation_date: 2009-04-03T11:35:44Z

[Term]
id: ID:0000699
name: egg yolk diameter
def: "diameter of the yolk when an egg is broken onto a flat surface" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000697 ! egg yolk morphology
created_by: caripark
creation_date: 2009-04-03T11:37:29Z

[Term]
id: ID:0000700
name: egg yolk height
def: "height at the highest point of the yolk when an egg is broken onto a flat surface" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
relationship: part_of ID:0000697 ! egg yolk morphology
created_by: caripark
creation_date: 2009-04-03T11:37:29Z

[Term]
id: ID:0000701
name: product trait
def: "any measurable or observable characteristic of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait
created_by: caripark
creation_date: 2009-04-06T02:14:59Z

[Term]
id: ID:0000702
name: udder cleft
def: "upward extension and depth of the suspensory ligament separating the two halves of the udder" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000703
name: udder depth
def: "distance between udder floor and tarsal joint (point of the hock), viewed from the side" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000704
name: rear udder height
def: "distance from the udder floor to the point at the top where it joins the body wall" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000705
name: rear udder width
def: "width of the udder at the top of the rear udder attachment" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000067 ! udder morphology
created_by: caripark
creation_date: 2009-04-23T08:43:06Z

[Term]
id: ID:0000706
name: longissimus dorsi morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis" [ISBN:1587341026 "Gray's Anatomy"]
subset: slim_cattle
subset: slim_pig
is_a: MT:0004248 ! epaxial muscle morphology
created_by: caripark
creation_date: 2009-04-23T01:15:57Z

[Term]
id: ID:0000707
name: skeletal muscle lean weight
def: "actual or estimated weight of skeletal muscle, minus the associated fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "estimated carcass lean content" NARROW []
synonym: "lean mass" NARROW []
synonym: "lean meat weight" NARROW []
synonym: "lean muscle mass" EXACT []
is_a: ID:0000712 ! skeletal muscle weight
created_by: caripark
creation_date: 2009-04-27T02:57:55Z

[Term]
id: ID:0000708
name: reflectance value
def: "a measurement of light reflection from the surface of meat, used to measure color or quantitate myoglobin forms" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "light reflection" EXACT []
relationship: part_of ID:0000104 ! meat color
created_by: caripark
creation_date: 2009-04-28T10:04:07Z

[Term]
id: ID:0000709
name: shoulder muscle weight
def: "weight of the cut of meat from the upper portion of the front leg of the pig, trimmed of fat" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000712 ! skeletal muscle weight
relationship: part_of ID:0000422 ! shoulder weight
created_by: caripark
creation_date: 2009-04-28T01:47:10Z

[Term]
id: ID:0000710
name: pectoralis muscle morphology
subset: slim_chkn
is_obsolete: true
created_by: caripark
creation_date: 2009-04-28T01:59:13Z

[Term]
id: ID:0000711
name: abdominal fat pad weight
def: "weight of the encapsulated adipose tissue in the abdomen" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0000010 ! abdominal fat pad morphology
created_by: caripark
creation_date: 2009-04-29T03:54:23Z

[Term]
id: ID:0000712
name: skeletal muscle weight
def: "weight of one or more of the striated muscles attached to the skeleton" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003398 ! skeletal muscle size
is_a: MT:0004233 ! muscle weight
created_by: caripark
creation_date: 2009-05-01T04:13:32Z

[Term]
id: ID:0000713
name: myosin isoform type IIb content
def: "amount of myosin isoform type IIb present in a muscle sample, as determined by SDS-PAGE" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000746 ! skeletal muscle fiber type
created_by: caripark
creation_date: 2009-05-01T05:21:37Z

[Term]
id: ID:0000714
name: product weight
def: "weight of a product produced by or obtained from the body of an animal" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: ID:0000701 ! product trait
created_by: caripark
creation_date: 2009-05-04T03:19:20Z

[Term]
id: ID:0000717
name: response to novel food
def: "reaction upon exposure to novel food" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0001431 ! eating behavior
is_a: MT:0003107 ! response to novelty
created_by: caripark
creation_date: 2009-05-05T03:47:58Z

[Term]
id: ID:0000718
name: pH in semispinalis capitis muscle
def: "relative acidity or alkalinity in the semispinalis capitis muscle, as measured by the concentration of hydrogen ion" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000685 ! muscle pH
created_by: caripark
creation_date: 2009-05-05T03:53:48Z

[Term]
id: ID:0000719
name: ham bone weight
def: "weight of bone in the ham" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000563 ! ham weight
created_by: caripark
creation_date: 2009-05-06T09:06:13Z

[Term]
id: ID:0000720
name: nonfunctional nipples
def: "number of nipples incapable of secreting milk in response to suckling by offspring" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0001881 ! mammary gland physiology
created_by: caripark
creation_date: 2009-05-06T09:39:43Z

[Term]
id: ID:0000721
name: band neutrophil count
def: "number of immature neutrophils undergoing granulopoiesis; nuclei are unsegmented" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_pig
synonym: "band-formed neutrophil count" EXACT []
is_a: MT:0000222 ! neutrophil count
created_by: caripark
creation_date: 2009-05-06T10:28:10Z

[Term]
id: ID:0000722
name: milk energy yield
def: "the energy content of milk; may be based on a combination of fat, protein, lactose, ash, and water content" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000019 ! milk product quality
created_by: caripark
creation_date: 2009-05-06T11:33:11Z

[Term]
id: ID:0000723
name: testes volume
def: "volume of the male reproductive glands" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0001148 ! testes size
created_by: caripark
creation_date: 2009-05-06T11:41:01Z

[Term]
id: ID:0000724
name: phytohemagglutin (PHA)-induced lymphocyte proliferation
def: "proliferation of lymphocytes upon stimulation with phytohemagglutinin, a mucoprotein isolated from the kidney bean" [CP:Cari Park_Iowa State University curator, MeSH:D12.776.765.678.750]
subset: slim_pig
is_a: ID:0000393 ! mitogen-induced lymphocyte proliferation
created_by: caripark
creation_date: 2009-05-06T01:13:37Z

[Term]
id: ID:0000726
name: angularity
def: "conformation of the animal's back, withers, and neck, viewed from behind" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "dairy form" EXACT []
is_a: ID:0000000 ! conformation
created_by: caripark
creation_date: 2009-05-06T03:13:00Z

[Term]
id: ID:0000727
name: teat placement
def: "alignment of the teats in relation to each other" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0006078 ! nipple morphology
created_by: caripark
creation_date: 2009-05-06T03:19:16Z

[Term]
id: ID:0000729
name: carcass temperature
def: "temperature of the carcass at a given time post-mortem" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0005535 ! body temperature
created_by: caripark
creation_date: 2009-05-07T09:43:03Z

[Term]
id: ID:0000730
name: height at withers
def: "height of an animal measured from the ground to the high point on the back, between the shoulder blades" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0001253 ! body height
created_by: caripark
creation_date: 2009-05-07T11:05:57Z

[Term]
id: ID:0000731
name: chest width
def: "width of the chest, viewed from the front" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "strength" RELATED []
relationship: part_of MT:0004134 ! chest morphology
created_by: caripark
creation_date: 2009-05-07T12:48:20Z

[Term]
id: ID:0000732
name: chest depth
def: "dorsal-ventral dimension of the chest, measured directly behind the front legs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0004134 ! chest morphology
created_by: caripark
creation_date: 2009-05-07T12:59:41Z

[Term]
id: ID:0000733
name: heel depth
def: "vertical distance from the ground to the hairline at the back of the hoof" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology
created_by: caripark
creation_date: 2009-05-07T01:17:19Z

[Term]
id: ID:0000734
name: hoof diagonal
def: "distance from the tip of the hoof to the hairline at the back of the hoof" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "foot diagonal" EXACT []
relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology
created_by: caripark
creation_date: 2009-05-07T01:17:19Z

[Term]
id: ID:0000735
name: hoof angle
def: "angle at which the hoof wall meets the ground" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "foot angle" EXACT []
relationship: part_of MT:0004271 ! paw/hand/foot/hoof morphology
created_by: caripark
creation_date: 2009-05-07T01:17:19Z

[Term]
id: ID:0000736
name: temperament
def: "general attitude or characteristic reactions of an organism exhibited toward another organism" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0002557 ! social/conspecific interaction
created_by: caripark
creation_date: 2009-05-07T01:31:27Z

[Term]
id: ID:0000737
name: hind leg set
def: "squareness of the hind legs in relation to the body; may be assessed from the side or from behind" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "rear leg set" EXACT []
relationship: part_of MT:0000556 ! hindlimb morphology
created_by: caripark
creation_date: 2009-05-07T01:44:48Z

[Term]
id: ID:0000738
name: conformation of feet and legs
def: "assessment of the overall structure and proportions of the feet and legs" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: ID:0000000 ! conformation
is_a: MT:0002109 ! limb morphology
created_by: caripark
creation_date: 2009-05-07T01:53:41Z

[Term]
id: ID:0000739
name: rump morphology
def: "any measurable or observable characteristic related to the shape or structure of the hindquarters" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
is_a: MT:0002089 ! postnatal growth/weight/body size
created_by: caripark
creation_date: 2009-05-07T02:23:12Z

[Term]
id: ID:0000740
name: rump width
def: "distance between the caudal protrusions of the pelvis, viewed from behind" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
synonym: "thurl width" EXACT []
relationship: part_of ID:0000739 ! rump morphology
created_by: caripark
creation_date: 2009-05-07T02:27:08Z

[Term]
id: ID:0000741
name: rump angle
def: "slope of the topline of the rump, between the cranial and caudal protrusions of the pelvic bone, viewed from the side" [CP:Cari Park_Iowa State University curator]
subset: slim_cattle
relationship: part_of ID:0000739 ! rump morphology
created_by: caripark
creation_date: 2009-05-07T02:27:08Z

[Term]
id: ID:0000742
name: sarcomere length
def: "length of the segment of a myofibril between two Z lines" [CP:Cari Park_Iowa State University curator, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
subset: slim_pig
is_a: MT:0004090 ! sarcomere morphology
created_by: caripark
creation_date: 2009-05-07T02:45:53Z

[Term]
id: ID:0000743
name: skeletal muscle fiber number
def: "number of large multinucleated cells in a cross-section of skeletal muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0003084 ! skeletal muscle fiber morphology
created_by: caripark
creation_date: 2009-05-07T03:19:34Z

[Term]
id: ID:0000744
name: neck weight
def: "weight of the cut of meat from the dorsal side of the pig, anterior to the third rib" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2009-05-07T03:37:37Z

[Term]
id: ID:0000745
name: jowl weight
def: "weight of the cut of meat obtained from the cheek of the pig" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: ID:0000714 ! product weight
created_by: caripark
creation_date: 2009-05-07T03:46:46Z

[Term]
id: ID:0000746
name: skeletal muscle fiber type
def: "classification of skeletal muscle fibers based on myosin isoform content and oxidative/glycolytic capacity" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
is_a: MT:0002106 ! muscle physiology
created_by: caripark
creation_date: 2009-05-07T03:52:39Z

[Term]
id: ID:0000747
name: number of type I myofibers
def: "average number of type I, slow oxidative fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000746 ! skeletal muscle fiber type
created_by: caripark
creation_date: 2009-05-07T07:22:41Z

[Term]
id: ID:0000748
name: number of type IIa myofibers
def: "average number of type IIa, fast oxidative fibers in a cross-section of muscle" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of ID:0000746 ! skeletal muscle fiber type
created_by: caripark
creation_date: 2009-05-07T07:22:41Z

[Term]
id: ID:0000749
name: area of type I myofibers
namespace: Trait.ontology
def: "total area in a cross-section of skeletal muscle occupied by type I, slow oxidative fibers" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0003399 ! skeletal muscle fiber size
created_by: caripark
creation_date: 2009-05-07T07:31:16Z

[Term]
id: ID:0000750
name: area of type IIa myofibers
namespace: Trait.ontology
def: "total area in a cross-section of skeletal muscle occupied by type IIa, fast oxidative fibers" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0003399 ! skeletal muscle fiber size
created_by: caripark
creation_date: 2009-05-07T07:31:16Z

[Term]
id: ID:0000751
name: area of type IIb myofibers
namespace: Trait.ontology
def: "total area in a cross-section of skeletal muscle occupied by type IIb, fast glycolytic fibers" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
relationship: part_of MT:0003399 ! skeletal muscle fiber size
created_by: caripark
creation_date: 2009-05-07T07:31:16Z

[Term]
id: ID:0000752
name: number of IgM-positive B cells
def: "subpopulation of peripheral blood mononuclear cells that stain positive for immunoglobulin M" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "IgM-positive leukocytes" EXACT []
is_a: MT:0002459 ! B cell physiology
created_by: caripark
creation_date: 2009-05-07T07:45:57Z

[Term]
id: ID:0000753
name: number of CD4+ T cells
def: "subpopulation of peripheral blood mononuclear cells that stain positive for CD4" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "number of CD4-positive leukocytes" EXACT []
is_a: MT:0005463 ! CD4+ T cell physiology
created_by: caripark
creation_date: 2009-05-07T07:50:21Z

[Term]
id: ID:0000754
name: number of CD8+ T cells
def: "subpopulation of peripheral blood mononuclear cells that stain positive for CD8" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "number of CD8-positive leukocytes" EXACT []
is_a: MT:0004392 ! CD8+ T cell physiology
created_by: caripark
creation_date: 2009-05-07T07:51:21Z

[Term]
id: ID:0000755
name: number of N1c-positive T cells
def: "subpopulation of peripheral blood mononuclear cells expressing gamma and delta chains of the T cell receptor" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "number of N1c-positive leukocytes" EXACT []
is_a: MT:0002444 ! T cell physiology
created_by: caripark
creation_date: 2009-05-07T07:53:29Z

[Term]
id: ID:0000756
name: number of MHCII-positive B cells
def: "subpopulation of peripheral blood mononuclear cells that stain positive for major histocompatibility complex class II" [CP:Cari Park_Iowa State University curator]
subset: slim_pig
synonym: "MHCII-positive leukocytes" EXACT []
is_a: MT:0002459 ! B cell physiology
created_by: caripark
creation_date: 2009-05-07T07:57:05Z

[Term]
id: MT:0000001
name: Trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig

[Term]
id: MT:0000002
name: head size
namespace: Trait.ontology
def: "physical dimensions of the head" [smb:MGI_curator]
subset: slim_pig
is_a: MT:0000432 ! head morphology

[Term]
id: MT:0000003
name: adipose tissue morphology
namespace: Trait.ontology
alt_id: MT:0000011
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "adipose tissue abnormalities" EXACT []
is_a: MT:0005375 ! adipose tissue trait

[Term]
id: MT:0000010
name: abdominal fat pad morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue in the abdomen" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0005334 ! fat pad morphology

[Term]
id: MT:0000013
name: fat distribution
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0000137
name: vertebrae morphology
namespace: Trait.ontology
alt_id: MT:0001538
def: "malformed bony segment of the spinal column" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal vertebrae" EXACT []
synonym: "vertebra defect" EXACT []
is_a: MT:0002114 ! axial skeleton morphology

[Term]
id: MT:0000138
name: vertebrae number
namespace: Trait.ontology
def: "missing bony segments of the spinal column" [J:35802]
subset: slim_cattle
subset: slim_pig
synonym: "absence of vertebrae" EXACT []
is_a: MT:0000137 ! vertebrae morphology

[Term]
id: MT:0000179
name: blood chemistry
namespace: Trait.ontology
alt_id: MT:0001546
def: "anomalous concentrations of proteins, minerals, nutrients, gases, or other substances in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "blood chemistry abnormalities" EXACT []
is_a: MT:0005428 ! clinical chemistry

[Term]
id: MT:0000180
name: circulating cholesterol level
namespace: Trait.ontology
def: "anomalous concentration in the blood of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal cholesterol level" EXACT []
is_a: MT:0003947 ! cholesterol level
is_a: MT:0003949 ! circulating lipid level

[Term]
id: MT:0000187
name: triglyceride level
namespace: Trait.ontology
alt_id: MT:0001551
def: "anomalous concentration of this molecule, glycerol esterified at each of its three hydroxyl groups by a fatty acid; triglyceride is an important molecule for storage of fatty acids in adipose tissue" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal triacylglycerol level" EXACT []
is_a: MT:0001547 ! lipid level

[Term]
id: MT:0000188
name: circulating glucose level
namespace: Trait.ontology
alt_id: MT:0001557
def: "anomalous concentration in the blood of this major monosaccharide of the body; it is an important energy source" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood glucose level" EXACT []
is_a: MT:0002078 ! glucose homeostasis

[Term]
id: MT:0000217
name: white blood cell count
namespace: Trait.ontology
alt_id: MT:0001587
def: "anomalies in the number of leukocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal WBC cell" EXACT []
synonym: "abnormal white blood cell number" EXACT []
synonym: "leukocyte count abnormalities" EXACT []
synonym: "white blood cell count abnormalities" EXACT []
synonym: "white blood cell number abnormalities" EXACT []
is_a: MT:0000716 ! immune system cell morphology
is_a: MT:0002429 ! blood cell morphology/development

[Term]
id: MT:0000221
name: WBC count
namespace: Trait.ontology
def: "fewer than normal numbers of WBCs" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
synonym: "decreased leukocyte count" EXACT []
synonym: "decreased WBC number" EXACT []
synonym: "leukocytopenia" EXACT []
synonym: "leukopenia" EXACT []
synonym: "lymphopenia" EXACT []
is_a: MT:0000217 ! white blood cell count

[Term]
id: MT:0000222
name: neutrophil count
namespace: Trait.ontology
def: "fewer than normal neutrophil numbers" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "decreased neutrophil number" EXACT []
synonym: "neutropenia" EXACT []
synonym: "segmented neutrophil count" EXACT []
is_a: MT:0000334 ! granulocyte number
is_a: MT:0002415 ! neutrophil morphology/development

[Term]
id: MT:0000226
name: mean corpuscular volume
namespace: Trait.ontology
alt_id: MT:0001590
def: "deviation from normal for the average amount of space occupied by each red blood cell, calculated from the hematocrit and red cell count, in erythrocyte indices" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
comment: MCV is calculated by dividing the hematocrit by the total number of RBCs and multiplying this number by ten (10). This was found on medfriendly.com. cwg 3/10/03
subset: slim_chkn
synonym: "abnormal MCV" EXACT []
synonym: "abnormal mean cell volume" EXACT []
is_a: MT:0002124 ! red blood cell

[Term]
id: MT:0000245
name: erythropoiesis
namespace: Trait.ontology
alt_id: MT:0001608
def: "atypical process of red blood cell formation" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8, tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal erythrocytopoiesis" EXACT []
synonym: "erythropoiesis abnormalities" EXACT []
is_a: MT:0002123 ! hematopoiesis

[Term]
id: MT:0000266
name: cardiac morphology
namespace: Trait.ontology
alt_id: MT:0000271
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the organ that pumps blood through the body" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "heart morphology" RELATED []
xref: GO:0007505
xref: MP:0000266
is_a: MT:0002127 ! cardiovascular system morphology

[Term]
id: MT:0000334
name: granulocyte number
namespace: Trait.ontology
alt_id: MT:0000723
def: "fewer than expected number of leukocytes that have abundant granules in the cytoplasm: basophils, neutrophils, or eosinophils" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "decreased granulocyte number" EXACT []
synonym: "granulocytopenia" EXACT []
is_a: MT:0000221 ! WBC count
is_a: MT:0002441 ! granulocyte morphology/development

[Term]
id: MT:0000367
name: coat/ hair morphology
namespace: Trait.ontology
def: "anomalous color, structure, growth, or texture of the hair" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal coat/ hair" EXACT []
synonym: "coat/ hair abnormalities" EXACT []
synonym: "coat/ hair anomalies" EXACT []
is_a: MT:0005393 ! skin/coat/nails/feathers trait

[Term]
id: MT:0000428
name: craniofacial morphology
namespace: Trait.ontology
def: "anomalous structure or development of the face and/or cranium" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "craniofacial abnormalities" EXACT []
synonym: "craniofacial defects" EXACT []
is_a: MT:0005382 ! craniofacial trait

[Term]
id: MT:0000432
name: head morphology
namespace: Trait.ontology
def: "anomalous structure or development of the portion of the body containing the brain and organs of sight, hearing, taste, and smell" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "abnormal head" EXACT []
synonym: "head abnormalities" EXACT []
is_a: MT:0000428 ! craniofacial morphology

[Term]
id: MT:0000462
name: digestive system morphology
namespace: Trait.ontology
alt_id: MT:0000463
alt_id: MT:0002141
def: "anomalous structure of the system dedicated to the mechanical, chemical, and enzymatic processing of food" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "digestive system abnormalities" EXACT []
synonym: "digestive system defects" EXACT []
synonym: "digestive system: dysmorphology" EXACT []
xref: MGI:2173601
is_a: MT:0005381 ! digestive/alimentary trait

[Term]
id: MT:0000477
name: intestine morphology
namespace: Trait.ontology
alt_id: MT:0000475
def: "malformation of the digestive tube passing from the stomach to the anus" [J:48968]
subset: slim_pig
synonym: "abnormal bowel wall" EXACT []
synonym: "abnormal intestine" EXACT []
synonym: "bowel wall abnormalities" EXACT []
synonym: "intestinal abnormalities" EXACT []
is_a: MT:0000462 ! digestive system morphology

[Term]
id: MT:0000496
name: small intestine morphology
namespace: Trait.ontology
def: "structural or developmental anomalies of the intestinum tenue" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "abnormal small intestine" EXACT []
synonym: "small intestine abnormalities" EXACT []
is_a: MT:0000477 ! intestine morphology

[Term]
id: MT:0000545
name: limbs/digits/tail morphology
namespace: Trait.ontology
def: "morphological or developmental anomaly of the digits, autopod, limbs, or tail" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal extremities" EXACT []
synonym: "abnormal extremity morphology" EXACT []
synonym: "extremities abnormalities" EXACT []
synonym: "extremities defects" EXACT []
is_a: MT:0005371 ! limbs/digits/tail trait

[Term]
id: MT:0000548
name: limb length
namespace: Trait.ontology
def: "average length of the extremities" [tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "leg length" RELATED []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0000550
name: forelimb morphology
namespace: Trait.ontology
def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior extremeties" [tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "forelimb abnormalities" EXACT []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0000556
name: hindlimb morphology
namespace: Trait.ontology
def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior extremeties" [tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "hindlimb abnormalities" EXACT []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0000558
name: tibia morphology
namespace: Trait.ontology
def: "structural anomaly of the medial and larger of the two bones of the lower leg" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal tibia" EXACT []
is_a: MT:0003723 ! long bone morphology

[Term]
id: MT:0000559
name: femur morphology
namespace: Trait.ontology
def: "structural anomaly of the long bone of the thigh" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "abnormal femur" EXACT []
is_a: MT:0003723 ! long bone morphology

[Term]
id: MT:0000598
name: liver morphology
namespace: Trait.ontology
alt_id: MT:0000595
def: "malformation or absence of this bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, J:23170, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal liver" EXACT []
synonym: "Liver" EXACT []
is_a: MT:0002138 ! liver/biliary system morphology

[Term]
id: MT:0000627
name: mammary gland morphology
namespace: Trait.ontology
def: "malformation of the milk-secreting gland that lies within the breast; usually rudimentary in males" [J:70183]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal mammary glands" EXACT []
is_a: MT:0001119 ! female reproductive anatomy
is_a: MT:0002163 ! gland morphology

[Term]
id: MT:0000653
name: sex gland morphology
namespace: Trait.ontology
def: "anomalous structure of any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal sex glands" EXACT []
is_a: MT:0002163 ! gland morphology

[Term]
id: MT:0000676
name: water content
namespace: Trait.ontology
def: "more or less than the normal total amount of water retained in the body" [il:Ira Lu_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0005451 ! body composition

[Term]
id: MT:0000685
name: immune system morphology
namespace: Trait.ontology
def: "morphological anomalies in the organs or cells associated with the development and formation of lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "immune system abnormalities" EXACT []
synonym: "lymphoid system abnormalities" EXACT []
synonym: "lymphopoietic system abnormalities" EXACT []
is_a: MT:0005387 ! immune system trait

[Term]
id: MT:0000689
name: spleen morphology
namespace: Trait.ontology
alt_id: MT:0002226
def: "atypical structure of the organ that functions to filter blood and to store red corpuscles and platelets" [J:27463, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal spleen structure" EXACT []
synonym: "spleen abnormalities" EXACT []
is_a: MT:0002396 ! hematopoietic system morphology/development
is_a: MT:0002722 ! immune system organ morphology

[Term]
id: MT:0000716
name: immune system cell morphology
namespace: Trait.ontology
def: "anomalous structure, development, or number of immune cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
comment: new pslim term
subset: slim_cattle
subset: slim_pig
synonym: "abnormal immune cell" EXACT []
synonym: "immune system: cellular abnormalities" EXACT []
is_a: MT:0000685 ! immune system morphology

[Term]
id: MT:0000717
name: lymphocyte number
namespace: Trait.ontology
def: "deviation from the normal number of white blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "Abnormal Immune Cell Number" EXACT []
is_a: MT:0000221 ! WBC count
is_a: MT:0002401 ! lymphopoiesis
is_a: MT:0002619 ! lymphocyte morphology/development

[Term]
id: MT:0000759
name: skeletal muscle morphology
namespace: Trait.ontology
def: "anomalous structure of any of the striated muscle fibers connected at either or both extremities with the bony framework of the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal skeletal muscle" EXACT []
synonym: "skeletal muscle abnormalities" EXACT []
is_a: MT:0002108 ! muscle morphology

[Term]
id: MT:0001116
name: gonad size
namespace: Trait.ontology
def: "reduced size of the testis or the ovary" [J:34193, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "hypogonad" EXACT []
synonym: "hypogonadism" EXACT []
is_a: MT:0002211 ! primary sex determination

[Term]
id: MT:0001119
name: female reproductive anatomy
namespace: Trait.ontology
def: "anomalous structure of the organs associated with producing offspring in the gender that bears the offspring" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0001120
name: uterus morphology
namespace: Trait.ontology
def: "malformation or absence of the female muscular organ of gestation" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0001119 ! female reproductive anatomy

[Term]
id: MT:0001126
name: ovary morphology
namespace: Trait.ontology
def: "malformed female reproductive gland containing the germ cells" [J:35782, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "abnormal gonad" EXACT []
synonym: "abnormal ovaries" EXACT []
is_a: MT:0000653 ! sex gland morphology
is_a: MT:0001119 ! female reproductive anatomy

[Term]
id: MT:0001127
name: ovary size
namespace: Trait.ontology
def: "reduced size of the female reproductive gland containing the germ cells" [J:35782, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "small ovaries" EXACT []
is_a: MT:0001116 ! gonad size
is_a: MT:0001126 ! ovary morphology

[Term]
id: MT:0001145
name: male reproductive anatomy
namespace: Trait.ontology
def: "anomalous structure of the organs associated with producing offspring in the gender that produces spermatozoa" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0001146
name: testis morphology
namespace: Trait.ontology
def: "anomalous structure of the male reproductive glands" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal gonad" EXACT []
synonym: "abnormal testes" EXACT []
is_a: MT:0000653 ! sex gland morphology
is_a: MT:0001145 ! male reproductive anatomy

[Term]
id: MT:0001148
name: testes size
namespace: Trait.ontology
def: "increased size of the male reproductive glands" [J:63229, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "enlarged testis" EXACT []
synonym: "macroorchidism" EXACT []
is_a: MT:0001116 ! gonad size
is_a: MT:0001146 ! testis morphology

[Term]
id: MT:0001156
name: spermatogenesis
namespace: Trait.ontology
def: "incomplete maturation or aberrant formation of the male gametes" [J:58959]
subset: slim_pig
synonym: "abnormal sperm development" EXACT []
is_a: MT:0001929 ! gametogenesis

[Term]
id: MT:0001175
name: lung morphology
namespace: Trait.ontology
def: "malformed organ of respiration" [J:35802]
subset: slim_chkn
synonym: "abnormal lung" EXACT []
is_a: MT:0002132 ! respiratory system morphology

[Term]
id: MT:0001186
name: pigmentation trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0001191
name: skin condition
namespace: Trait.ontology
def: "anomalous state of the skin" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0002096 ! skin condition/ morphology

[Term]
id: MT:0001200
name: skin thickness
namespace: Trait.ontology
def: "greater depth of skin" [J:47225]
subset: slim_pig
is_a: MT:0001191 ! skin condition

[Term]
id: MT:0001253
name: body height
namespace: Trait.ontology
def: "anomalous shoulder to floor distance compared to controls" [dlb:Donna Burkart_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
xref: GO:0040007
xref: GO:0040014
is_a: MT:0003956 ! body size

[Term]
id: MT:0001256
name: body length
namespace: Trait.ontology
def: "anomalous crown to tail distance compared to controls" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
xref: GO:0040007
xref: GO:0040014
is_a: MT:0003956 ! body size

[Term]
id: MT:0001259
name: body weight
namespace: Trait.ontology
def: "anomaly in average weight compared to controls" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0001263
name: weight loss
namespace: Trait.ontology
def: "progressive reduction of body weight below normal average for age" [J:45400]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001259 ! body weight

[Term]
id: MT:0001392
name: locomotor activity
namespace: Trait.ontology
subset: slim_pig
synonym: "locomotion" EXACT []
is_a: MT:0003491 ! voluntary movement

[Term]
id: MT:0001413
name: response to new environment
namespace: Trait.ontology
subset: slim_pig
is_a: MT:0001449 ! learning/ memory
is_a: MT:0003107 ! response to novelty

[Term]
id: MT:0001417
name: exploration in new environment
namespace: Trait.ontology
subset: slim_pig
synonym: "exploration" RELATED []
is_a: MT:0001413 ! response to new environment

[Term]
id: MT:0001431
name: eating behavior
namespace: Trait.ontology
alt_id: MT:0001430
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002069 ! eating/drinking behavior

[Term]
id: MT:0001432
name: food preference
namespace: Trait.ontology
subset: slim_chkn
is_a: MT:0001431 ! eating behavior

[Term]
id: MT:0001449
name: learning/ memory
namespace: Trait.ontology
subset: slim_pig
is_a: MT:0002063 ! learning/memory/conditioning

[Term]
id: MT:0001510
name: coat appearance
namespace: Trait.ontology
def: "coat that looks different from the usual state" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "abnormal appearance of the fur" EXACT []
is_a: MT:0000367 ! coat/ hair morphology

[Term]
id: MT:0001533
name: skeleton physiology
namespace: Trait.ontology
def: "anomalous function of the bony framework of the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal bone/ skeleton physiology" EXACT []
synonym: "bone/ skeletal physiology abnormalities" EXACT []
is_a: MT:0005390 ! skeleton trait

[Term]
id: MT:0001542
name: bone strength
namespace: Trait.ontology
def: "change in the ability of bone to endure the application of force without yielding or breaking" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0001533 ! skeleton physiology

[Term]
id: MT:0001544
name: cardiovascular system physiology
namespace: Trait.ontology
alt_id: MT:0000302
alt_id: MT:0001623
alt_id: MT:0001626
alt_id: MT:0002130
def: "any measurable characteristic related to the function of or processes in the heart or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
relationship: part_of MT:0005385 ! cardiovascular system trait

[Term]
id: MT:0001547
name: lipid level
namespace: Trait.ontology
def: "anomalous concentrations of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water) in the body" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002118 ! lipid homeostasis

[Term]
id: MT:0001560
name: circulating insulin level
namespace: Trait.ontology
alt_id: MT:0000191
def: "anomalous blood concentration of this polypeptide hormone, secreted by beta cells of the pancreas, that promotes glucose utilization, protein synthesis, and the formation and storage of neutral lipids" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal insulin level" EXACT []
is_a: MT:0002078 ! glucose homeostasis

[Term]
id: MT:0001570
name: circulating enzyme level
namespace: Trait.ontology
alt_id: MT:0000201
def: "aberrant concentration in the blood of any of the proteins that act as catalysts for biological reactions" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood enzyme level" EXACT []
is_a: MT:0005319 ! enzyme/ coenzyme level
is_a: MT:0005416 ! circulating protein level

[Term]
id: MT:0001601
name: myelopoiesis
namespace: Trait.ontology
alt_id: MT:0000169
def: "atypical process of bone marrow cell formation and/or bone marrow-derived blood cells" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8, tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "myelopoiesis abnormalities" EXACT []
is_a: MT:0005460 ! leukopoiesis

[Term]
id: MT:0001661
name: life span
namespace: Trait.ontology
def: "persistence of life for a longer period than is normal for an organism" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "extended lifespan" EXACT []
is_a: MT:0005372 ! life span/aging trait

[Term]
id: MT:0001731
name: postnatal growth rate
namespace: Trait.ontology
def: "anomaly in reaching a developmental stage or stages after birth" [il:Ira Lu_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0001764
name: homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body with respect to various functions and to chemical composition of the fluids and tissues" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "homeostasis abnormalities" EXACT []
is_a: MT:0005376 ! homeostasis/metabolism trait

[Term]
id: MT:0001781
name: white fat amount
namespace: Trait.ontology
alt_id: MT:0000007
subset: slim_cattle
subset: slim_pig
synonym: "abnormal white fat" EXACT []
is_a: MT:0002970 ! white fat morphology
is_a: MT:0005452 ! body fat amount

[Term]
id: MT:0001784
name: fluid regulation
namespace: Trait.ontology
def: "anomalous control of intracellular and/or extracellular fluid" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0001785
name: edema
namespace: Trait.ontology
alt_id: MT:0001338
def: "an accumulation of an excessive amount of watery fluid in cells or intercellular tissues" [J:54065, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
synonym: "oedema" EXACT []
is_a: MT:0001784 ! fluid regulation

[Term]
id: MT:0001787
name: pericardial edema*
namespace: Trait.ontology
alt_id: MT:0000290
def: "accumulation of watery fluid in the pericardial sac of the heart" [J:52597]
subset: slim_chkn
synonym: "fluid in the heart sac" EXACT []
synonym: "pericardial edema" EXACT []
is_a: MT:0001785 ! edema

[Term]
id: MT:0001790
name: immune system physiology
namespace: Trait.ontology
alt_id: MT:0001789
def: "deviation from the normal function of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
comment: pslim term (new)
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "Immune System" EXACT []
synonym: "immune system/response abnormalities" EXACT []
synonym: "immune system: response/ function abnormalities" EXACT []
xref: GO:0006955
is_a: MT:0005387 ! immune system trait

[Term]
id: MT:0001793
name: susceptibility to infection
namespace: Trait.ontology
alt_id: MT:0002548
def: "a change in the likelihood that an organism will develop ill effects from a pathogenic invasion or from components of or toxins produced by pathogens" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "altered resistance to infection" EXACT []
is_a: MT:0005025 ! response to infection

[Term]
id: MT:0001800
name: humoral immune response
namespace: Trait.ontology
def: "abnormal immune function mediated by antibodies" [Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_chkn
subset: slim_pig
synonym: "antibody response" EXACT []
synonym: "antibody-mediated immune response abnormalities" EXACT []
synonym: "humoral immune response dysfunction" EXACT []
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0001805
name: circulating IgG level
namespace: Trait.ontology
alt_id: MT:0001815
def: "less than normal immunoglobulin class G level" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "Decreased Serum Level of Immunoglobulin G" EXACT []
is_a: MT:0002490 ! circulating immunoglobulin concentration

[Term]
id: MT:0001819
name: immune cell physiology
namespace: Trait.ontology
def: "abnormal function of the cells of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "immune cell dysfunction" EXACT []
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0001845
name: inflammatory response
namespace: Trait.ontology
def: "aberrant reaction of the microcirculation characterized by movement of fluid and leukocytes from the blood into extravascular tissues" [Pathology:ISBN 0-397-51047-0]
subset: slim_pig
synonym: "inflammation" EXACT []
synonym: "inflammatory response" EXACT []
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0001846
name: tissue specific inflammatory response
namespace: Trait.ontology
def: "greater than expected response to injury, infection, or insult" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0001845 ! inflammatory response

[Term]
id: MT:0001866
name: nasal inflammation
namespace: Trait.ontology
def: "local accumulation of fluid, plasma proteins, and leukocytes in the proximal portion of the respiratory passages" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_pig
is_a: MT:0002405 ! respiratory system inflammation

[Term]
id: MT:0001867
name: rhinitis
namespace: Trait.ontology
alt_id: MT:0001113
def: "inflammation of the mucous membrane of the nose" [J:60896, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8, tc:Teresa Chu_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "nasal catarrh" EXACT []
is_a: MT:0001866 ! nasal inflammation
is_a: MT:0002238 ! nasal mucosa morphology

[Term]
id: MT:0001881
name: mammary gland physiology
namespace: Trait.ontology
def: "aberrant function of the milk-secreting gland that lies within the breast" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal mammary gland function" EXACT []
synonym: "mammary gland abnormalities" EXACT []
is_a: MT:0002164 ! gland physiology
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0001882
name: lactation
namespace: Trait.ontology
alt_id: MT:0001383
def: "atypical production of milk from the mammary gland" [J:51296]
subset: slim_cattle
subset: slim_pig
synonym: "lactation abnormalities" EXACT []
synonym: "lactation defects" EXACT []
is_a: MT:0001881 ! mammary gland physiology

[Term]
id: MT:0001919
name: reproductive system physiology
namespace: Trait.ontology
def: "anomaly in the function of the organs associated with producing offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "reproductive system physiology anomalies" EXACT []
is_a: MT:0005389 ! reproductive system trait

[Term]
id: MT:0001921
name: fertility
namespace: Trait.ontology
alt_id: MT:0001372
def: "diminished ability to produce live offspring" [J:65030]
subset: slim_cattle
subset: slim_pig
synonym: "decreased fecundity" EXACT []
synonym: "semi-sterile" EXACT []
synonym: "semisterile" EXACT []
is_a: MT:0002161 ! fertility/fecundity

[Term]
id: MT:0001927
name: oestrous cycle (sensu Rodentia)
namespace: Trait.ontology
def: "failure of or aberrant timing of the sexual cycle of female animals" [J:34193, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal estrous cycle" EXACT []
synonym: "abnormal estrus cycle" EXACT []
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0001928
name: ovulation
namespace: Trait.ontology
def: "aberration in the release of an ovum from a rupturing Graafian follicle, normally regulated by a surge in luteinizing hormone" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001927 ! oestrous cycle (sensu Rodentia)

[Term]
id: MT:0001929
name: gametogenesis
namespace: Trait.ontology
def: "defective formation or differentiation of germ cells" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, J:42324, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0001937
name: sexual maturation
namespace: Trait.ontology
def: "a delay or a block in the development of the sexual organs at a given age" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002212 ! secondary sex determination

[Term]
id: MT:0002060
name: skin morphology
namespace: Trait.ontology
def: "malformation or atypical structure of the membranous protective covering of the body" [J:56777, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal cutis" EXACT []
synonym: "abnormal skin anatomy" EXACT []
is_a: MT:0002096 ! skin condition/ morphology

[Term]
id: MT:0002063
name: learning/memory/conditioning
namespace: Trait.ontology
subset: slim_pig
xref: MGI:2173568
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002066
name: motor capabilities/coordination/movement
namespace: Trait.ontology
subset: slim_pig
xref: MGI:2173571
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002069
name: eating/drinking behavior
namespace: Trait.ontology
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
xref: MGI:2173574
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002073
name: hair growth
namespace: Trait.ontology
alt_id: MT:0000409
def: "absence or reduced amount of hair or abnormal onset of hair growth cycle or development" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_pig
synonym: "coat: hair growth defects" EXACT []
synonym: "hair growth abnormalities" EXACT []
xref: MGI:2173539
is_a: MT:0000367 ! coat/ hair morphology

[Term]
id: MT:0002075
name: coat color
namespace: Trait.ontology
alt_id: MT:0000368
def: "irregular or unusual pigmentation of the hair in relation to control animals" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "coat: color anomalies" EXACT []
xref: MGI:2173541
is_a: MT:0000367 ! coat/ hair morphology
is_a: MT:0001186 ! pigmentation trait

[Term]
id: MT:0002078
name: glucose homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium or processing in the body with respect to glucose in the fluids and tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal glucose metabolism" EXACT []
synonym: "metabolism: abnormal glucose homeostasis" EXACT []
xref: MGI:2173579
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0002089
name: postnatal growth/weight/body size
namespace: Trait.ontology
alt_id: MT:0001252
def: "increased or decreased average body size, weight or growth characteristic abnormalities manifesting after birth" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: phenoslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal trunk/ body shape" EXACT []
synonym: "growth/weight/body size abnormality: postnatal" EXACT []
synonym: "trunk/ body shape abnormalities" EXACT []
xref: GO:0040007
xref: GO:0040014
xref: MGI:2173534
is_a: MT:0005378 ! growth/size trait

[Term]
id: MT:0002096
name: skin condition/ morphology
namespace: Trait.ontology
alt_id: MT:0001185
def: "malformed or atypical condition of the skin" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_chkn
subset: slim_pig
synonym: "abnormal skin" EXACT []
synonym: "skin abnormalities" EXACT []
synonym: "skin: texture/condition anomalies" EXACT []
xref: MGI:2173545
is_a: MT:0005393 ! skin/coat/nails/feathers trait

[Term]
id: MT:0002106
name: muscle physiology
namespace: Trait.ontology
alt_id: MT:0002105
def: "anomalous function of the muscle, not due to an anatomical defect" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: former pslim term
subset: slim_chkn
subset: slim_pig
synonym: "muscle physiology abnormalities" EXACT []
synonym: "musculature: physiological defects" EXACT []
xref: MGI:2173559
is_a: MT:0005369 ! muscle trait

[Term]
id: MT:0002108
name: muscle morphology
namespace: Trait.ontology
alt_id: MT:0000728
alt_id: MT:0000758
def: "abnormal development of muscle tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal muscle" EXACT []
synonym: "abnormal musculature" EXACT []
synonym: "muscle abnormalities" EXACT []
synonym: "musculature abnormalities" EXACT []
synonym: "musculature: muscle dysmorphology" EXACT []
xref: MGI:2173558
is_a: MT:0005369 ! muscle trait

[Term]
id: MT:0002109
name: limb morphology
namespace: Trait.ontology
alt_id: MT:0000546
def: "form, structure, or number of limbs" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal limb" EXACT []
synonym: "extremities: limb dysmorphology" EXACT []
synonym: "limb abnormalities" EXACT []
xref: MGI:2173549
is_a: MT:0000545 ! limbs/digits/tail morphology

[Term]
id: MT:0002114
name: axial skeleton morphology
namespace: Trait.ontology
def: "abnormal development of vertebral, spinal or sternal bones resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "skeletal: axial defects" EXACT []
xref: MGI:2173562
is_a: MT:0005508 ! skeleton morphology

[Term]
id: MT:0002115
name: skeleton extremities morphology
namespace: Trait.ontology
def: "abnormal development of limb, foot or tail bones resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_chkn
subset: slim_pig
synonym: "skeletal: extremities defects" EXACT []
xref: MGI:2173563
is_a: MT:0000545 ! limbs/digits/tail morphology
is_a: MT:0005508 ! skeleton morphology

[Term]
id: MT:0002118
name: lipid homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body with respect to lipids in the fluids and tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "metabolism: abnormal lipid homeostasis" EXACT []
xref: MGI:2173578
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0002121
name: metabolism
namespace: Trait.ontology
alt_id: MT:0002120
def: "altered chemical and physical processes of the body or of a tissue, not due to lipid or glucose chemistry" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
synonym: "metabolism: other metabolic defect" EXACT []
synonym: "metabolism: other metabolic defect measured by clinical chemistry" EXACT []
xref: MGI:2173580
xref: MGI:2173581
is_a: MT:0005376 ! homeostasis/metabolism trait

[Term]
id: MT:0002123
name: hematopoiesis
namespace: Trait.ontology
alt_id: MT:0000236
alt_id: MT:0000241
alt_id: MT:0001600
alt_id: MT:0001604
alt_id: MT:0001605
alt_id: MT:0002402
def: "abnormal development of the enucleated fetal and adult erythrocytes that develop in the aorta, genital ridge and mesonephros region and later in the fetal and adult liver" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood development" EXACT []
synonym: "abnormal definitive hematopoiesis" EXACT []
synonym: "abnormal hematogenesis" EXACT []
synonym: "abnormal hematosis" EXACT []
synonym: "abnormal hemogenesis" EXACT []
synonym: "abnormal hemopoiesis" EXACT []
synonym: "abnormal sanguification" EXACT []
synonym: "blood development abnormalities" EXACT []
synonym: "deregulated hematopoiesis" EXACT []
synonym: "hematology: hematopoietic anomalies" EXACT []
synonym: "hematopoiesis abnormalities" EXACT []
synonym: "myeloid stem cell abnormalities" EXACT []
xref: MGI:2173583
is_a: MT:0002429 ! blood cell morphology/development

[Term]
id: MT:0002124
name: red blood cell
namespace: Trait.ontology
def: "anomaly in the structure or maintenance of erythrocytes or oxygen-transporting material in the blood" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal erythrocyte" EXACT []
synonym: "hematology: abnormal red blood cell count/anemia" EXACT []
xref: MGI:2173584
is_a: MT:0000245 ! erythropoiesis

[Term]
id: MT:0002127
name: cardiovascular system morphology
namespace: Trait.ontology
alt_id: MT:0000177
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the heart or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
relationship: part_of MT:0005385 ! cardiovascular system trait

[Term]
id: MT:0002132
name: respiratory system morphology
namespace: Trait.ontology
alt_id: MT:0001174
def: "anomalous structure of pulmonary tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "respiratory system abnormalities" EXACT []
synonym: "respiratory system: dysmorphology" EXACT []
xref: MGI:2173592
is_a: MT:0005388 ! respiratory system trait

[Term]
id: MT:0002133
name: respiratory system physiology
namespace: Trait.ontology
def: "anomalous function of the pulmonary system; inability or reduced ability to intake and exchange oxygen and carbon dioxide with the environment" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_pig
synonym: "abnormal respiratory function" EXACT []
synonym: "respiratory system dysfunction" EXACT []
synonym: "respiratory system physiology abnormalities" EXACT []
synonym: "respiratory system: respiratory distress/failure/functional anomalies" EXACT []
xref: MGI:2173593
is_a: MT:0005388 ! respiratory system trait

[Term]
id: MT:0002138
name: liver/biliary system morphology
namespace: Trait.ontology
alt_id: MT:0002172
def: "structural abnormality or aberrant development of any of the tissues of the liver or biliary system" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_chkn
subset: slim_pig
synonym: "hepatic system abnormalities" EXACT []
synonym: "hepatic system defects" EXACT []
synonym: "liver/hepatic system: dysmorphology" EXACT []
xref: MGI:2173598
is_a: MT:0005370 ! liver/biliary system trait

[Term]
id: MT:0002160
name: reproductive system morphology
namespace: Trait.ontology
alt_id: MT:0001114
alt_id: MT:0001115
def: "structural or developmental anomaly of any of the tissues involved in the reproductive system" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal reproductive anatomy" EXACT []
synonym: "abnormal reproductive system" EXACT []
synonym: "reproductive system abnormalities" EXACT []
synonym: "reproductive system defects" EXACT []
synonym: "reproductive system: dysmorphology" EXACT []
xref: MGI:2173620
is_a: MT:0005389 ! reproductive system trait

[Term]
id: MT:0002161
name: fertility/fecundity
namespace: Trait.ontology
alt_id: MT:0001920
def: "reduced ability or inability to produce live offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal fecundity" EXACT []
synonym: "reproductive system: fertility/fecundity anomalies" EXACT []
xref: MGI:2173621
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0002163
name: gland morphology
namespace: Trait.ontology
alt_id: MT:0000594
def: "abnormal development of any glandular tissue resulting in morphological abnormality" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "abnormal glands" EXACT []
synonym: "gland abnormalities" EXACT []
synonym: "glands: dysmorphology" EXACT []
xref: MGI:2173623
is_a: MT:0005379 ! endocrine/exocrine gland trait

[Term]
id: MT:0002164
name: gland physiology
namespace: Trait.ontology
alt_id: MT:0001733
alt_id: MT:0001738
alt_id: MT:0002692
def: "altered glandular secretion not due to anatomical defect" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
comment: pslim term
subset: slim_cattle
subset: slim_pig
synonym: "abnormal endocrine gland function" EXACT []
synonym: "abnormal endocrine system physiology" EXACT []
synonym: "abnormal gland function" EXACT []
synonym: "endocrine system physiology abnormalities" EXACT []
synonym: "gland function abnormalities" EXACT []
synonym: "glands: functional anomalies" EXACT []
xref: MGI:2173624
is_a: MT:0005379 ! endocrine/exocrine gland trait

[Term]
id: MT:0002192
name: hydrops fetalis
namespace: Trait.ontology
def: "an abnormal accumulation of serous fluid in fetal tissues" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
synonym: "fetal edema" EXACT []
is_a: MT:0001785 ! edema

[Term]
id: MT:0002210
name: sex determination
namespace: Trait.ontology
alt_id: MT:0001936
def: "anomaly of primary or secondary sexual development or characteristics" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal reproductive system development" EXACT []
synonym: "abnormal sexual differentiation" EXACT []
is_a: MT:0002160 ! reproductive system morphology

[Term]
id: MT:0002211
name: primary sex determination
namespace: Trait.ontology
def: "aberrant gonadal development resulting in either abnormal or absent gonads or the development of gonads inconsistent with the chromosomal sex" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal gonad development" EXACT []
is_a: MT:0002210 ! sex determination

[Term]
id: MT:0002212
name: secondary sex determination
namespace: Trait.ontology
def: "gonadal development may or may not be normal, and the phenotype of the animal outside the gonad does not match chromosomal sex or is ambiguous" [llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002210 ! sex determination

[Term]
id: MT:0002221
name: lymph organ size
namespace: Trait.ontology
def: "change in the normal size of lymphatic tissues" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0002722 ! immune system organ morphology

[Term]
id: MT:0002224
name: spleen size
namespace: Trait.ontology
def: "deviation from the normal spleen size" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0000689 ! spleen morphology
is_a: MT:0002221 ! lymph organ size

[Term]
id: MT:0002233
name: nose morphology
namespace: Trait.ontology
def: "any structural anomaly of the organ that is specialized for smell and is part of the respiratory system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "abnormal nose" EXACT []
is_a: MT:0002132 ! respiratory system morphology

[Term]
id: MT:0002238
name: nasal mucosa morphology
namespace: Trait.ontology
alt_id: MT:0001112
def: "any structural anomaly of the mucous membrane that lines the nasal cavity" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "abnormal nasal epithelium" EXACT []
synonym: "abnormal nasal mucosa" EXACT []
synonym: "abnormal nasal mucous membrane" EXACT []
is_a: MT:0002233 ! nose morphology
is_a: MT:0002277 ! respiratory mucosa morphology

[Term]
id: MT:0002269
name: muscle size
namespace: Trait.ontology
def: "a wasting of muscle tissue resulting in a derangement of the muscle fibers; occurs with age, immobilization, weightlessness, malnutrition or denervation" [cml:Cathleen M. Lutz_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "muscle atrophy" EXACT []
is_a: MT:0002108 ! muscle morphology

[Term]
id: MT:0002277
name: respiratory mucosa morphology
namespace: Trait.ontology
def: "structural anomaly of the mucous membrane lining the respiratory tract" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "abnormal respiratory mucosa" EXACT []
is_a: MT:0002132 ! respiratory system morphology

[Term]
id: MT:0002278
name: respiratory muscle morphology
namespace: Trait.ontology
def: "structural anomaly of any of the muscles involved in breathing" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002132 ! respiratory system morphology

[Term]
id: MT:0002279
name: diaphragm morphology
namespace: Trait.ontology
alt_id: MT:0000760
def: "structural defect in the thin musculomebranous barrier that separates the abdominal and thoracic cavities; these muscles often used for breathing control" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "abnormal diaphragm muscle" EXACT []
is_a: MT:0002278 ! respiratory muscle morphology
is_a: MT:0003358 ! hypaxial muscle morphology

[Term]
id: MT:0002280
name: intercostal muscle morphology
namespace: Trait.ontology
def: "anomaly in the respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
synonym: "abnormal intercostal muscles" EXACT []
is_a: MT:0002278 ! respiratory muscle morphology
is_a: MT:0003358 ! hypaxial muscle morphology

[Term]
id: MT:0002292
name: gestational length
namespace: Trait.ontology
def: "anomaly in the usual duration of time between when a fertilized egg implants in the wall of the uterus and the birth of offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0002396
name: hematopoietic system morphology/development
namespace: Trait.ontology
def: "any structural or developmental anomaly of the blood cells or the organs associated with the development and formation of blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal blood morphology" EXACT []
synonym: "abnormal hemopoietic system morphology/development" EXACT []
synonym: "hematopoietic organ abnormalities" EXACT []
is_a: MT:0005397 ! hematopoietic system trait

[Term]
id: MT:0002398
name: bone marrow cell morphology/development
namespace: Trait.ontology
def: "anomalous structure or formation of the cells found in the bone marrow" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "bone marrow cell abnormalities" EXACT []
is_a: MT:0002396 ! hematopoietic system morphology/development

[Term]
id: MT:0002401
name: lymphopoiesis
namespace: Trait.ontology
alt_id: MT:0000310
alt_id: MT:0001640
alt_id: MT:0001880
def: "atypical formation of lymphocytes and plasma cells from lymphoid stem cells which develop from the pluripotent hematopoietic stem cells in the bone marrow; these lymphoid stem cells differentiate into T-lymphocytes; B-lymphocytes; plasma cells; or NK-cells (natural killer cells), depending on the organ or tissues to which they migrate" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "abnormal lymphopoiesis" EXACT []
synonym: "lymphoid stem cell abnormalities" EXACT []
synonym: "lymphopoiesis abnormalities" EXACT []
is_a: MT:0005460 ! leukopoiesis

[Term]
id: MT:0002405
name: respiratory system inflammation
namespace: Trait.ontology
def: "local accumulation of fluid, plasma proteins, and leukocytes in the respiratory system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_pig
is_a: MT:0001846 ! tissue specific inflammatory response
is_a: MT:0002133 ! respiratory system physiology

[Term]
id: MT:0002410
name: susceptibility to viral infection
namespace: Trait.ontology
def: "reduced likelihood that an organism will develop ill effects from a viral infection or from components of or toxins produced by a virus" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "increased resistance to viral infection" EXACT []
is_a: MT:0001793 ! susceptibility to infection

[Term]
id: MT:0002411
name: susceptibility to bacterial infection
namespace: Trait.ontology
def: "reduced likelihood that an organism will develop ill effects from a bacterial infection or from components of or toxins produced by bacteria" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "increased resistance to bacterial infection" EXACT []
is_a: MT:0001793 ! susceptibility to infection

[Term]
id: MT:0002414
name: myeloblast morphology/development
namespace: Trait.ontology
def: "anomalous structure, formation, or numbers of the cells found in the bone marrow that give rise to the granulocyte line of blood cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "myeloblast abnormalities" EXACT []
is_a: MT:0002398 ! bone marrow cell morphology/development

[Term]
id: MT:0002415
name: neutrophil morphology/development
namespace: Trait.ontology
def: "anomalous structure, differentiation, or number of the granular leukocytes that have a three- to five-lobed nucleus and a cytoplasm that contains inconspicuous granules stainable by neutral dyes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "neutrophil abnormalities" EXACT []
is_a: MT:0002414 ! myeloblast morphology/development
is_a: MT:0002441 ! granulocyte morphology/development

[Term]
id: MT:0002420
name: adaptive immunity
namespace: Trait.ontology
def: "anomaly in the function of the response of antigen-specific lymphocytes to antigen, including the development of immunological memory" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_pig
synonym: "acquired immune response dysfunction" EXACT []
synonym: "adaptive immunity dysfunction" EXACT []
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0002421
name: cell-mediated immunity
namespace: Trait.ontology
def: "abnormal function of any adaptive immune response in which T cells play a main role" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
comment: this encompasses all adaptive immunity that cannot be transferred to a naive recipient with serum antibody (the definition of humoral immunity)
subset: slim_pig
synonym: "cell-mediated immunity dysfunction" EXACT []
is_a: MT:0002420 ! adaptive immunity

[Term]
id: MT:0002429
name: blood cell morphology/development
namespace: Trait.ontology
alt_id: MT:0000178
alt_id: MT:0000205
alt_id: MT:0001576
alt_id: MT:0002545
def: "anomalous structure, differentiation, or number of any of the cells found in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "blood cell abnormalities" EXACT []
synonym: "blood cell defects" EXACT []
is_a: MT:0002396 ! hematopoietic system morphology/development

[Term]
id: MT:0002441
name: granulocyte morphology/development
namespace: Trait.ontology
def: "anomalous structure, differentiation, or number of leukocytes that have abundant granules in the cytoplasm: basophils, neutrophils, or eosinophils" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "granulocyte abnormalities" EXACT []
is_a: MT:0001601 ! myelopoiesis

[Term]
id: MT:0002442
name: leukocyte physiology
namespace: Trait.ontology
def: "abnormal function of any of the white blood cells (basophils, eosinophils, neutrophils, lymphocytes, or monocytes)" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "leukocyte dysfunction" EXACT []
is_a: MT:0001819 ! immune cell physiology
is_a: MT:0002420 ! adaptive immunity
is_a: MT:0002421 ! cell-mediated immunity

[Term]
id: MT:0002444
name: T cell physiology
namespace: Trait.ontology
def: "anomalous response of T lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "abnormal T cell function" EXACT []
synonym: "abnormal T lymphocyte function" EXACT []
synonym: "t lymphocyte dysfunction" EXACT []
synonym: "T-cell dysfunction" EXACT []
is_a: MT:0003945 ! lymphocyte physiology

[Term]
id: MT:0002445
name: mononuclear leukocyte morphology/development
namespace: Trait.ontology
def: "anomalous structure, differentiation, or number of either of the mature lymphocytes or monocytes found in the blood" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "mononuclear leukocyte abnormalities" EXACT []
is_a: MT:0002414 ! myeloblast morphology/development
is_a: MT:0005460 ! leukopoiesis

[Term]
id: MT:0002449
name: immune cell development
namespace: Trait.ontology
def: "atypical formation of the cells of the immune system" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "immune cell developmental abnormalities" EXACT []
is_a: MT:0000716 ! immune system cell morphology

[Term]
id: MT:0002459
name: B cell physiology
namespace: Trait.ontology
def: "abnormal function of B lymphocytes" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "B cell dysfunction" EXACT []
synonym: "B lymphocyte dysfunction" EXACT []
synonym: "B lymphocyte functional anomalies" EXACT []
synonym: "B-cell dysfunction" EXACT []
is_a: MT:0003945 ! lymphocyte physiology

[Term]
id: MT:0002490
name: circulating immunoglobulin concentration
namespace: Trait.ontology
alt_id: MT:0001810
def: "deviation from the normal levels of glycoproteins present in the blood and other tissue, often functioning as antibodies" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "abnormal immunoglobulin concentration" EXACT []
synonym: "abnormal serum immunoglobulin concentration" EXACT []
synonym: "Abnormal Serum Level of Immunoglobulin" EXACT []
is_a: MT:0001800 ! humoral immune response
is_a: MT:0002459 ! B cell physiology
is_a: MT:0002723 ! immune serum protein physiology

[Term]
id: MT:0002501
name: inflammatory mediator physiology
namespace: Trait.ontology
def: "functional anomaly of any of the endogenous compounds that mediate the local accumulation of fluid, plasma proteins, and leukocytes at the site of injury, insult, or infection" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_pig
synonym: "inflammatory mediators" EXACT []
is_a: MT:0001845 ! inflammatory response
is_a: MT:0002723 ! immune serum protein physiology

[Term]
id: MT:0002529
name: interleukin physiology
namespace: Trait.ontology
def: "functional anomaly of any of the cytokines produced by leukocytes" [Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_pig
synonym: "abnormal lymphokines physiology" EXACT []
is_a: MT:0005049 ! cytokine physiology

[Term]
id: MT:0002557
name: social/conspecific interaction
namespace: Trait.ontology
alt_id: MT:0001351
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal social behavior" EXACT []
synonym: "abnormal socialization" EXACT []
synonym: "neurological/behavioral: social/conspecific interaction anomalies" EXACT []
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002572
name: emotion/affect behavior
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
is_a: MT:0005386 ! behavior/neurological trait

[Term]
id: MT:0002596
name: hematocrit
namespace: Trait.ontology
alt_id: MT:0000206
alt_id: MT:0001578
def: "greater or less than the average percentage of a volume of a blood sample occupied by red blood cells" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
synonym: "hematocrit traits" EXACT []
synonym: "packed cell volume" EXACT []
is_a: MT:0002124 ! red blood cell

[Term]
id: MT:0002619
name: lymphocyte morphology/development
namespace: Trait.ontology
alt_id: MT:0005063
def: "anomalous structure, differentiation, or number of the white blood cells formed in the body's lymphoid tissue" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "lymphocyte abnormalities" EXACT []
synonym: "lymphocyte structural abnormalities" EXACT []
is_a: MT:0002445 ! mononuclear leukocyte morphology/development

[Term]
id: MT:0002637
name: uterus size
namespace: Trait.ontology
def: "reduced size of the female muscular organ of gestation" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0001120 ! uterus morphology

[Term]
id: MT:0002644
name: circulating triglyceride level
namespace: Trait.ontology
alt_id: MT:0005143
def: "lower than normal concentration of triacylglycerols in the blood" [pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "low plasma triacylglycerol level" EXACT []
synonym: "low plasma triglyceride level" EXACT []
synonym: "low serum triacylglycerol level" EXACT []
synonym: "low serum triglyceride level" EXACT []
is_a: MT:0000187 ! triglyceride level
is_a: MT:0003949 ! circulating lipid level

[Term]
id: MT:0002664
name: circulating adrenocorticotropin level
namespace: Trait.ontology
def: "decreased concentration in the blood of the pituitary hormone that stimulates the secretion of adrenal cortical steroids and induces growth of the adrenal cortex" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "circulating adrenocorticotropic hormone level" EXACT []
synonym: "decreased serum levels of ACTH" EXACT []
synonym: "decreased serum levels of adrenocorticotropin" EXACT []
is_a: MT:0003966 ! adrenocorticotropin level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0002669
name: scrotum morphology
namespace: Trait.ontology
def: "malformation of the external sac of skin that encloses the testes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001145 ! male reproductive anatomy

[Term]
id: MT:0002673
name: sperm count
namespace: Trait.ontology
def: "increased or decreased numbers of spermatozoa" [pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal sperm number" EXACT []
is_a: MT:0001929 ! gametogenesis

[Term]
id: MT:0002674
name: sperm motility
namespace: Trait.ontology
def: "anomalies in the mobility of the spermatozoa" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001929 ! gametogenesis

[Term]
id: MT:0002679
name: corpora lutea morphology
namespace: Trait.ontology
def: "malformed or absent yellow endocrine body formed in the ovary after follicle rupture" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "abnormal corpus luteum" EXACT []
is_a: MT:0003356 ! luteinization

[Term]
id: MT:0002680
name: number of corpora lutea
namespace: Trait.ontology
def: "fewer than normal numbers of yellow endocrine body formed in the ovary after follicle rupture in a given oestrous cycle" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0002679 ! corpora lutea morphology

[Term]
id: MT:0002683
name: onset of fertility
namespace: Trait.ontology
def: "age at which animals develop the ability to produce live offspring" [llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "age at first breeding" NARROW []
synonym: "age at first egg" NARROW []
synonym: "age at puberty" EXACT []
synonym: "age at sexual maturity" EXACT []
is_a: MT:0001937 ! sexual maturation
is_a: MT:0002161 ! fertility/fecundity

[Term]
id: MT:0002722
name: immune system organ morphology
namespace: Trait.ontology
alt_id: MT:0000686
def: "anomalous structure/organization or development of lymphoid organs" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
synonym: "abnormal lymph organ" EXACT []
synonym: "immune system: organ abnormalities" EXACT []
is_a: MT:0000685 ! immune system morphology

[Term]
id: MT:0002723
name: immune serum protein physiology
namespace: Trait.ontology
def: "abnormal concentration or function of circulating immune proteins" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "immune system: serum protein abnormalities" EXACT []
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0002754
name: right ventricle size
namespace: Trait.ontology
def: "the physical dimensions, proportions, magnitude, or extent of the right lower chamber of the heart" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "right ventricular size" RELATED []
relationship: part_of MT:0003920 ! right ventricle morphology
relationship: part_of MT:0005406 ! heart size

[Term]
id: MT:0002773
name: circulating luteinizing hormone level
namespace: Trait.ontology
def: "lower than normal levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [J:35132, MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "decreased serum levels of LH" EXACT []
synonym: "decreased serum levels of luteinizing hormone" EXACT []
synonym: "decreased serum levels of lutropin" EXACT []
is_a: MT:0003361 ! circulating gonadotropin level
is_a: MT:0003969 ! luteinizing hormone level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0002790
name: circulating follicle stimulating hormone level
namespace: Trait.ontology
def: "less than expected blood concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "decreased serum levels of follicle stimulating hormone" EXACT []
synonym: "decreased serum levels of follitropin" EXACT []
synonym: "decreased serum levels of FSH" EXACT []
synonym: "decreased serum levels of gametokinetic hormone" EXACT []
is_a: MT:0003361 ! circulating gonadotropin level
is_a: MT:0003967 ! follicle stimulating hormone level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0002896
name: bone mineralization
namespace: Trait.ontology
def: "defect in the process by which minerals are deposited into bone" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0001533 ! skeleton physiology

[Term]
id: MT:0002907
name: parturition
namespace: Trait.ontology
def: "defect in the process of labor and delivery in female animals" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_pig
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0002932
name: joint morphology
namespace: Trait.ontology
def: "defect in the articulation point of two or more bones" [MeSH:National Library of Medicine_Medical Subject Headings, RGD:Rat Genome Database submission]
subset: slim_pig
is_a: MT:0005508 ! skeleton morphology

[Term]
id: MT:0002936
name: joint swelling
namespace: Trait.ontology
def: "enlargement of the joints, usually due to an accumulation of fluid" [RGD:Rat Genome Database submission]
subset: slim_pig
is_a: MT:0002932 ! joint morphology

[Term]
id: MT:0002970
name: white fat morphology
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0002972
name: cardiac muscle contractility
namespace: Trait.ontology
def: "ability of the heart muscle to shorten or to develop increased tension, often measured by dP/dT max" [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"]
subset: slim_chkn
is_a: MT:0001544 ! cardiovascular system physiology
is_a: MT:0005620 ! muscle contractility

[Term]
id: MT:0003047
name: thoracic vertebrae morphology
namespace: Trait.ontology
def: "malformation of any or all of the thirteen bony segments of the spine located anterior to the lumbar vertebrae and posterior to the cervical vertebrae" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0000137 ! vertebrae morphology

[Term]
id: MT:0003049
name: lumbar vertebrae morphology
namespace: Trait.ontology
def: "malformation of any or all of the six bony segments of the spine located anterior to the sacral vertebrae and posterior to the thoracic vertebrae" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0000137 ! vertebrae morphology

[Term]
id: MT:0003072
name: metatarsal bone morphology
namespace: Trait.ontology
def: "anomaly in the five bones of the hindpaws that articulate proximally with the cuneiform and cuboid bones of the tarsus and distally with the phalanges" [Anatomy of the Rat:Greene EC_Hafner Publishing Co_1935, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0002115 ! skeleton extremities morphology

[Term]
id: MT:0003073
name: metacarpal bone morphology
namespace: Trait.ontology
def: "anomaly in the five bones of the forepaws that articulate proximally with the carpal bones and distally with the phalanges" [Anatomy of the Rat:Greene EC_Hafner Publishing Co_1935, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
is_a: MT:0002115 ! skeleton extremities morphology

[Term]
id: MT:0003084
name: skeletal muscle fiber morphology
namespace: Trait.ontology
def: "anomalous structure of the skeletal muscle fibers, the large multinucleated cells that make up the skeletal muscles" [smb:Susan M. Bello_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
is_a: MT:0000759 ! skeletal muscle morphology
is_a: MT:0004087 ! muscle fiber morphology

[Term]
id: MT:0003107
name: response to novelty
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
is_a: MT:0002572 ! emotion/affect behavior

[Term]
id: MT:0003313
name: locomotor activation
namespace: Trait.ontology
subset: slim_pig
is_a: MT:0001392 ! locomotor activity

[Term]
id: MT:0003346
name: pectoral muscle morphology
namespace: Trait.ontology
def: "anomaly in the two muscles that make up the upper and fore part of the chest that adduct and rotate the arm and lift the ribs" [MeSH:National Library of Medicine_Medical Subject Headings, ncbi:Matthew Mailman_NCBI request, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003356
name: luteinization
namespace: Trait.ontology
def: "atypical transformation of the mature ovarian follicle and its theca interna into a corpus luteum after ovulation" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, J:43075, J:57854]
subset: slim_pig
is_a: MT:0001126 ! ovary morphology

[Term]
id: MT:0003358
name: hypaxial muscle morphology
namespace: Trait.ontology
def: "malformation of the muscles derived from the lateral myotome and lateral portion of the dermomyotome; these include the thoracic intercostal and abdominal muscles, limb muscles and superficial back muscles, as well as the diaphragm and the tip of the tongue" [PMID:1591996]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal limb muscle morphology" EXACT []
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003361
name: circulating gonadotropin level
namespace: Trait.ontology
def: "aberrant blood concentration of the peptide hormones that stimulate gonadal functions such as gametogenesis and sex steroid hormone production in the ovary and the testis" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0003366
name: circulating glucocorticoid level
namespace: Trait.ontology
def: "aberrant blood concentration of the corticosteroids regulating carbohydrate metabolism and exhibiting anti-inflammatory activity" [ncbi:Matthew Mailman_NCBI request, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0003398
name: skeletal muscle size
namespace: Trait.ontology
def: "greater than average dimensions of one or more of the muscles of the skeleton" [J:94134, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0003399
name: skeletal muscle fiber size
namespace: Trait.ontology
def: "increase in the size of the large multinucleated cells that make up the skeletal muscles" [J:94134, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0003084 ! skeletal muscle fiber morphology

[Term]
id: MT:0003402
name: liver weight
namespace: Trait.ontology
def: "reduced average weight of the bile-secreting exocrine gland" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
is_a: MT:0000598 ! liver morphology

[Term]
id: MT:0003491
name: voluntary movement
namespace: Trait.ontology
subset: slim_pig
is_a: MT:0002066 ! motor capabilities/coordination/movement

[Term]
id: MT:0003641
name: lung size
namespace: Trait.ontology
def: "reduced size of the lung relative to normal" [J:95332, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_chkn
is_a: MT:0001175 ! lung morphology

[Term]
id: MT:0003699
name: female reproductive system physiology
namespace: Trait.ontology
def: "anomaly in the function of the female organs associated with producing offspring" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0003723
name: long bone morphology
namespace: Trait.ontology
def: "malformation of any of the several elongated bones of the extremities" [monikat:Monika Tomczuk_Mouse Genome Informatics Curator]
subset: slim_chkn
subset: slim_pig
is_a: MT:0002115 ! skeleton extremities morphology

[Term]
id: MT:0003795
name: bone structure
namespace: Trait.ontology
def: "anomaly in the composite material or the layered arrangement of the bony endoskeleton of the body" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0005508 ! skeleton morphology

[Term]
id: MT:0003815
name: hair number
namespace: Trait.ontology
def: "total number of hairs" [llw2:Linda Washburn_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "amount of hair" RELATED []
is_a: MT:0001510 ! coat appearance
is_a: MT:0002073 ! hair growth

[Term]
id: MT:0003920
name: right ventricle morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the right lower chamber of the heart" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "right ventricular morphology" RELATED []
xref: MP:0003920
is_a: MT:0005294 ! heart ventricle morphology

[Term]
id: MT:0003945
name: lymphocyte physiology
namespace: Trait.ontology
def: "abnormal function of any of the white blood cells that includes B cells, T cells, and NK cells" [monikat:Monika Tomczuk_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0002442 ! leukocyte physiology

[Term]
id: MT:0003947
name: cholesterol level
namespace: Trait.ontology
def: "anomaly in the concentration in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0001547 ! lipid level
is_a: MT:0005278 ! cholesterol homeostasis

[Term]
id: MT:0003949
name: circulating lipid level
namespace: Trait.ontology
def: "anomalous concentrations of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water) in the blood" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0000179 ! blood chemistry
is_a: MT:0001547 ! lipid level

[Term]
id: MT:0003953
name: hormone level
namespace: Trait.ontology
def: "aberrant tissue or circulating concentration of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0003956
name: body size
namespace: Trait.ontology
def: "anomaly in the average body weight, height and/or length of an organism compared to controls" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0003963
name: corticosterone level
namespace: Trait.ontology
alt_id: MT:0003837
def: "anomalous blood or tissue concentration of this adrenocortical steroid; induces glycogen deposition and regulates sodium conservation and potassium secretion" [smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_chkn
synonym: "abnormal adrenal corticosterone level" EXACT []
is_a: ID:0000671 ! glucocorticoid level

[Term]
id: MT:0003965
name: pituitary hormone level
namespace: Trait.ontology
alt_id: MT:0005125
def: "aberration in the blood or tissue concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003953 ! hormone level

[Term]
id: MT:0003966
name: adrenocorticotropin level
namespace: Trait.ontology
def: "anomalous concentration of the pituitary hormone that stimulates the secretion of adrenal cortical steroids and induces growth of the adrenal cortex" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0003967
name: follicle stimulating hormone level
namespace: Trait.ontology
def: "anomalous concentration of the hormone that, in females, stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0003969
name: luteinizing hormone level
namespace: Trait.ontology
def: "aberrant levels in the bloodstream of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary" [MeSH:National Library of Medicine_Medical Subject Headings, pvb:Pierre Vanden Borre_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal LH level" RELATED []
synonym: "abnormal lutropin level" RELATED []
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0003971
name: thyroid-stimulating hormone level
namespace: Trait.ontology
def: "anomalous concentration of the hormone that stimulates the growth and function of the thyroid gland" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
is_a: MT:0003965 ! pituitary hormone level

[Term]
id: MT:0004043
name: pH regulation
namespace: Trait.ontology
def: "anomaly in the function of the buffer systems of the body in combination with the respiratory and renal systems that control the relative acidity or alkalinity of the body, as measured by the concentration of hydrogen ion" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0004047
name: milk composition
namespace: Trait.ontology
def: "anomaly in the protein or lipid content or the appearance of milk" [smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_cattle
relationship: part_of MT:0001882 ! lactation

[Term]
id: MT:0004087
name: muscle fiber morphology
namespace: Trait.ontology
def: "malformed or poorly developed muscle fibers, the cylindrical multinucleated muscle cells that contract when stimulated" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0002108 ! muscle morphology

[Term]
id: MT:0004090
name: sarcomere morphology
namespace: Trait.ontology
def: "any structural abnormality in the segment of a myofibril between two Z lines comprised of multi-protein complexes composed of three different filament systems; these systems work together to contract and relax muscle" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
is_a: MT:0004087 ! muscle fiber morphology

[Term]
id: MT:0004134
name: chest morphology
namespace: Trait.ontology
def: "malformation of the part of the body between the neck and the abdomen" [J:59168, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_cattle
synonym: "abnormal thorax morphology" EXACT []
is_a: MT:0002089 ! postnatal growth/weight/body size

[Term]
id: MT:0004233
name: muscle weight
namespace: Trait.ontology
def: "any anomaly in the average muscle weight" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0002269 ! muscle size

[Term]
id: MT:0004244
name: spontaneous abortion
namespace: Trait.ontology
def: "the natural or accidental termination of a pregnancy at a stage where the embryo or the fetus is incapable of surviving independently of the mother" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator]
subset: slim_cattle
synonym: "miscarriage" EXACT []
is_a: MT:0003699 ! female reproductive system physiology

[Term]
id: MT:0004248
name: epaxial muscle morphology
namespace: Trait.ontology
def: "malformation of the muscles derived from the medial myotome; includes the intrinsic back muscles" [PMID:1591996]
subset: slim_cattle
subset: slim_pig
is_a: MT:0000759 ! skeletal muscle morphology

[Term]
id: MT:0004271
name: paw/hand/foot/hoof morphology
namespace: Trait.ontology
def: "malformation of the pedal or prehensile extremity of vertebrates" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_pig
synonym: "abnormal paw morphology" EXACT []
synonym: "abnormal paws" EXACT []
synonym: "paw abnormalities" RELATED []
is_a: MT:0002109 ! limb morphology

[Term]
id: MT:0004350
name: humerus length
namespace: Trait.ontology
def: "increased length of one or both of the bones of the forelimb that articulates with the scapula above and the radius and ulna below" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0005296 ! humerus morphology

[Term]
id: MT:0004357
name: tibia length
namespace: Trait.ontology
def: "increased length of the medial and larger of the two bones of the lower leg" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0000558 ! tibia morphology

[Term]
id: MT:0004392
name: CD8+ T cell physiology
namespace: Trait.ontology
def: "anomalous response of the subset of T lymphocytes that carry the CD8 marker" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator]
subset: slim_pig
is_a: MT:0002444 ! T cell physiology

[Term]
id: MT:0005007
name: bone density
namespace: Trait.ontology
def: "abnormal mineral content of bone" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_chkn
synonym: "bone density anomalies" EXACT []
is_a: MT:0002896 ! bone mineralization

[Term]
id: MT:0005025
name: response to infection
namespace: Trait.ontology
def: "the body's reaction to invasion and multiplication of microorganisms in its tissues, or the body's reaction to components of or toxins produced by pathogenic microorganisms" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001790 ! immune system physiology

[Term]
id: MT:0005026
name: susceptibility to parasitic infection
namespace: Trait.ontology
def: "reduced likelihood that an organism will develop ill effects from a parasitic infection or from components of or toxins produced by parasites" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
synonym: "increased resistance to parasitic infection" EXACT []
is_a: MT:0001793 ! susceptibility to infection

[Term]
id: MT:0005049
name: cytokine physiology
namespace: Trait.ontology
def: "functional anomaly of any of the non-antibody proteins made by inflammatory leukocytes and some non-leukocytic cells that affect the behavior of other cells" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Immunobiology_The Immune System in Health and Disease:ISBN 0-8153-1691-7]
subset: slim_pig
is_a: MT:0002501 ! inflammatory mediator physiology

[Term]
id: MT:0005116
name: circulating pituitary hormone level
namespace: Trait.ontology
alt_id: MT:0005115
def: "aberration in the blood concentration of any of the hormones secreted by the pituitary" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal circulating level of pituitary hormone" EXACT []
synonym: "abnormal serum level of pituitary hormone" EXACT []
is_a: MT:0003965 ! pituitary hormone level
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0005119
name: circulating thyroid-stimulating hormone level
namespace: Trait.ontology
def: "less than expected blood concentration of the hormone that stimulates the growth and function of the thyroid gland" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
synonym: "decreased serum levels of thyroid-stimulating hormone" EXACT []
synonym: "decreased serum levels of thyropic hormone" EXACT []
synonym: "decreased serum levels of thyrotrophin" EXACT []
synonym: "decreased serum levels of thyrotropin" EXACT []
synonym: "decreased serum levels of TSH" EXACT []
is_a: MT:0003971 ! thyroid-stimulating hormone level
is_a: MT:0005116 ! circulating pituitary hormone level

[Term]
id: MT:0005177
name: total circulating cholesterol level
namespace: Trait.ontology
alt_id: MT:0001549
def: "anomalous concentration in the blood of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal total plasma cholesterol level" EXACT []
synonym: "abnormal total serum cholesterol level" EXACT []
is_a: MT:0000180 ! circulating cholesterol level

[Term]
id: MT:0005184
name: circulating progesterone level
namespace: Trait.ontology
def: "aberration in the blood concentration of this antiestrogenic steroid" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
synonym: "abnormal circulating level of progesterone" EXACT []
is_a: MT:0005418 ! circulating hormone level

[Term]
id: MT:0005278
name: cholesterol homeostasis
namespace: Trait.ontology
def: "anomaly in the state of equilibrium in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes" [J:71350, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0002118 ! lipid homeostasis

[Term]
id: MT:0005280
name: fatty acid level
namespace: Trait.ontology
def: "anomalous concentration of organic, monobasic acids derived from hydrocarbons and which are complexed with serum albumin for transport; they are saturated and unsaturated" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001547 ! lipid level
relationship: part_of MT:0005666 ! adipose tissue physiology

[Term]
id: MT:0005285
name: unsaturated fatty acid level
namespace: Trait.ontology
def: "less than normal non-circulating level of organic, monobasic acids derived from hydrocarbons in which the carbon chain has one or more double or triple carbon-carbon bonds" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "lowered unsaturated fatty acid level" EXACT []
is_a: MT:0005280 ! fatty acid level

[Term]
id: MT:0005286
name: saturated fatty acid level
namespace: Trait.ontology
def: "less than normal non-circulating level of organic, monobasic acids derived from hydrocarbons in which the carbon chain contains only single carbon-carbon bonds" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "lowered saturated fatty acid level" EXACT []
is_a: MT:0005280 ! fatty acid level

[Term]
id: MT:0005294
name: heart ventricle morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the lower chamber(s) of the heart" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "cardiac ventricle morphology" RELATED []
synonym: "cardiac ventricular morphology" RELATED []
synonym: "heart ventricular morphology" EXACT []
relationship: part_of MT:0000266 ! cardiac morphology

[Term]
id: MT:0005296
name: humerus morphology
namespace: Trait.ontology
def: "malformation of the bone of the forelimb that articulates with the scapula above and the radius and ulna below" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
synonym: "abnormal humerus" EXACT []
is_a: MT:0003723 ! long bone morphology

[Term]
id: MT:0005319
name: enzyme/ coenzyme level
namespace: Trait.ontology
def: "altered concentration of any of these proteins, or their cofactors, that act as catalysts to induce chemical changes in other substances" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0005334
name: fat pad morphology
namespace: Trait.ontology
def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue" [CP:Cari Park_Iowa State University curator]
subset: slim_chkn
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0005345
name: circulating corticosterone level
namespace: Trait.ontology
def: "anomalous blood concentration of this adrenocortical steroid; induces glycogen deposition and regulates sodium conservation and potassium secretion" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_chkn
synonym: "abnormal serum level of corticosterone" EXACT []
is_a: MT:0003366 ! circulating glucocorticoid level
is_a: MT:0003963 ! corticosterone level

[Term]
id: MT:0005357
name: locomotor activation in a new environment
namespace: Trait.ontology
subset: slim_pig
synonym: "locomotion" RELATED []
is_a: MT:0001413 ! response to new environment
is_a: MT:0003313 ! locomotor activation

[Term]
id: MT:0005369
name: muscle trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005370
name: liver/biliary system trait
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
synonym: "hepatic" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005371
name: limbs/digits/tail trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005372
name: life span/aging trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
synonym: "lifespan" EXACT []
synonym: "survival" EXACT []
synonym: "viability" EXACT []
synonym: "viable" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005375
name: adipose tissue trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "fat" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005376
name: homeostasis/metabolism trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005378
name: growth/size trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005379
name: endocrine/exocrine gland trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005381
name: digestive/alimentary trait
namespace: Trait.ontology
subset: slim_chkn
subset: slim_pig
synonym: "gastrointestinal" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005382
name: craniofacial trait
namespace: Trait.ontology
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005385
name: cardiovascular system trait
namespace: Trait.ontology
def: "any measurable or observable characterisitic of the heart and/or vasculature" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "cardiac" EXACT []
synonym: "circulatory" EXACT []
synonym: "heart" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005386
name: behavior/neurological trait
namespace: Trait.ontology
alt_id: MT:0001350
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005387
name: immune system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005388
name: respiratory system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "lung" EXACT []
synonym: "pulmonary" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005389
name: reproductive system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "reproduction" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005390
name: skeleton trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "bone" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005393
name: skin/coat/nails/feathers trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005395
name: other trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005397
name: hematopoietic system trait
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "hemopoietic system phenotype" EXACT []
is_a: MT:0000001 ! Trait

[Term]
id: MT:0005406
name: heart size
namespace: Trait.ontology
def: "the physical dimensions, proportions, magnitude, or extent of the cardiac muscle or any of its component structures" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "cardiac size" RELATED []
relationship: part_of MT:0000266 ! cardiac morphology

[Term]
id: MT:0005410
name: fertilization
namespace: Trait.ontology
def: "anomaly in the process beginning with penetration of the secondary oocyte by the spermatozoon and completed by fusion of the male and female pronuclei" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
is_a: MT:0001919 ! reproductive system physiology

[Term]
id: MT:0005416
name: circulating protein level
namespace: Trait.ontology
def: "anomalous blood concentration of any of the macromolecules consisting of long chains of amino acids in peptide linkage" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
subset: slim_pig
synonym: "abnormal protein level" EXACT []
is_a: MT:0000179 ! blood chemistry

[Term]
id: MT:0005418
name: circulating hormone level
namespace: Trait.ontology
def: "anomalous blood concentration of any of the chemical substances that have specific regulatory effects on the activity of a certain organ or organs; originally applied to substances secreted by various endocrine glands and transported in the bloodstream to the target organs, it is sometimes extended to include substances that are not produced by the endocrine glands but that have similar effects" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000179 ! blood chemistry
is_a: MT:0003953 ! hormone level

[Term]
id: MT:0005428
name: clinical chemistry
namespace: Trait.ontology
def: "any anomaly in the laboratory tests that show the presence of physiologically significant substances in the blood, urine, tissue, and body fluids with application to the diagnosis or therapy of disease" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0005437
name: glycogen level
namespace: Trait.ontology
def: "anomalous concentration of this readily converted carbohydrate reserve, found in most tissues of the body, especially liver and muscle" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
relationship: part_of ID:0000694 ! muscle glycogen homeostasis
relationship: part_of MT:0005438 ! glycogen homeostasis

[Term]
id: MT:0005438
name: glycogen homeostasis
namespace: Trait.ontology
def: "abnormal processing and or utilization of this readily converted carbohydrate reserve, found in most tissues of the body, especially liver and muscle" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
is_a: MT:0002078 ! glucose homeostasis

[Term]
id: MT:0005449
name: food intake
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
synonym: "feed consumption" EXACT []
synonym: "food consumption" EXACT []
is_a: MT:0001431 ! eating behavior

[Term]
id: MT:0005451
name: body composition
namespace: Trait.ontology
def: "anomalous relative amounts of various components of the body, such as percent body fat" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0005452
name: body fat amount
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_a: MT:0000003 ! adipose tissue morphology

[Term]
id: MT:0005456
name: weight gain
namespace: Trait.ontology
def: "number of excess calories needed to increase body weight by a specified amount" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_cattle
subset: slim_pig
is_a: MT:0001259 ! body weight

[Term]
id: MT:0005460
name: leukopoiesis
namespace: Trait.ontology
alt_id: MT:0002430
def: "anomalous process of generating white blood cells (leukocytes) from the pluripotent hematopoietic stem cells of the bone marrow; two significant pathways generate various types of leukocytes: myelopoiesis, in which leukocytes in the blood are derived from myeloid stem cells, and lymphopoiesis, in which leukocytes of the lymphatic system (lymphocytes) are generated from lymphoid stem cells" [MeSH:National Library of Medicine_Medical Subject Headings]
subset: slim_pig
synonym: "abnormal leukocyte morphology/development" EXACT []
synonym: "leukocyte abnormalities" EXACT []
synonym: "white blood cell abnormalities" EXACT []
is_a: MT:0002123 ! hematopoiesis
is_a: MT:0002449 ! immune cell development

[Term]
id: MT:0005463
name: CD4+ T cell physiology
namespace: Trait.ontology
def: "anomalous response of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "abnormal CD4+ T cell function" EXACT []
synonym: "CD4+ T cell dysfunction" EXACT []
is_a: MT:0002444 ! T cell physiology

[Term]
id: MT:0005508
name: skeleton morphology
namespace: Trait.ontology
alt_id: MT:0000055
def: "malformation of the bony framework of the body in vertebrates" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
synonym: "abnormal bone/ skeleton" EXACT []
synonym: "bone/ skeletal abnormalities" EXACT []
is_a: MT:0005390 ! skeleton trait

[Term]
id: MT:0005535
name: body temperature
namespace: Trait.ontology
def: "deviation in the level of heat natural to a living being" [cwg:Carroll-Ann W. Goldsmith_Mouse Genome Informatics Curator, RGD:Rat Genome Database submission, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_pig
is_a: MT:0001764 ! homeostasis

[Term]
id: MT:0005620
name: muscle contractility
namespace: Trait.ontology
def: "aberrant ability of a muscle to shorten or to develop increased tension" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8]
subset: slim_chkn
is_a: MT:0002106 ! muscle physiology

[Term]
id: MT:0005629
name: lung weight
namespace: Trait.ontology
def: "any change from the normal state in the physical heaviness of the lung" [RGD:Rat Genome Database submission]
subset: slim_chkn
is_a: MT:0003641 ! lung size

[Term]
id: MT:0005666
name: adipose tissue physiology
namespace: Trait.ontology
subset: slim_cattle
subset: slim_pig
is_a: MT:0005375 ! adipose tissue trait

[Term]
id: MT:0006078
name: nipple morphology
namespace: Trait.ontology
def: "malformation of the erectile protuberance at the tip of the mammary gland" [J:92627, smb:Susan M. Bello_Mouse Genome Informatics Curator, Taber's Cyclopedic Medical Dictionary_19th edition:ISBN N 0-8036-0655-99]
subset: slim_cattle
subset: slim_pig
synonym: "teat morphology" EXACT []
is_a: MT:0000627 ! mammary gland morphology

[Term]
id: MT:0006087
name: body mass index
namespace: Trait.ontology
def: "greater than normal average of a measure of weight for height" [ncbi:Matthew Mailman_NCBI request, smb:Susan M. Bello_Mouse Genome Informatics Curator]
subset: slim_pig
synonym: "increased BMI" EXACT []
is_a: MT:0001259 ! body weight

[Term]
id: MT:0007028
name: heart weight
namespace: Trait.ontology
def: "mass of the heart times gravity" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
subset: slim_pig
synonym: "cardiac weight" RELATED []
is_a: MT:0005406 ! heart size

[Term]
id: MT:0007033
name: right ventricle weight
namespace: Trait.ontology
def: "mass of the right lower chamber of the heart times gravity" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
subset: slim_chkn
synonym: "right ventricular weight" RELATED []
relationship: part_of MT:0002754 ! right ventricle size

[Typedef]
id: is_a
name: is a
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig

[Typedef]
id: part_of
name: part_of
namespace: Trait.ontology
subset: slim_cattle
subset: slim_chkn
subset: slim_pig
is_transitive: true