format-version: 1.2 date: 17:10:2012 15:26 saved-by: caripark auto-generated-by: OBO-Edit 2.0 subsetdef: slim_cattle "ATO Cattle Slim" subsetdef: slim_chkn "ATO Chicken Slim" subsetdef: slim_pig "ATO Pig Slim" subsetdef: slim_sheep "ATO Sheep Slim" synonymtypedef: curation_status "curation_status" RELATED default-namespace: default_namespace [Term] id: CMO:0000000 name: clinical measurement namespace: Clinical_Measurement.ontology is_a: ID:0000001 ! linked ontologies [Term] id: CMO:0000001 name: cardiovascular measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000000 ! clinical measurement [Term] id: CMO:0000002 name: heart rate namespace: Clinical_Measurement.ontology is_a: CMO:0000001 ! cardiovascular measurement is_a: CMO:0000670 ! heart measurement [Term] id: CMO:0000003 name: blood pressure measurement namespace: Clinical_Measurement.ontology def: "Measurement of the pressure, or force per area, exerted by circulating blood against the walls of the blood vessels. The pressure is dependent on the energy of the heart action, elasticity of the vessel walls and volume and viscosity of the blood." [Berne and Levy:Berne and Levy Physiology 6th Edition] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000001 ! cardiovascular measurement [Term] id: CMO:0000004 name: systolic blood pressure namespace: Clinical_Measurement.ontology def: "The maximum arterial pressure within the cardiac cycle, i.e. at the point at which the heart is in its maximal state of contraction. This is the time when the blood is forced from the ventricles of the heart into the pulmonary artery and the aorta." [Berne and Levy:Berne and Levy Physiology 6th Ed, Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000003 ! blood pressure measurement [Term] id: CMO:0000005 name: diastolic blood pressure namespace: Clinical_Measurement.ontology def: "The minimum arterial pressure within the cardiac cycle, usually at the point at which the heart is in a state of relaxation and expansion. This is the time when the ventricles fill with blood." [Berne and Levy:Berne and Levy Physiology 6th Ed] is_a: CMO:0000003 ! blood pressure measurement [Term] id: CMO:0000006 name: left ventricle diastolic blood pressure namespace: Clinical_Measurement.ontology def: "The minimum pressure in the heart left ventricle, usually at the point at which the heart is in a state of relaxation and expansion and the ventricles fill with blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000005 ! diastolic blood pressure [Term] id: CMO:0000007 name: left ventricle systolic blood pressure namespace: Clinical_Measurement.ontology def: "Measurement of the pressure within the heart left ventricle at the point of maximal contraction, when the blood is forced from the left ventricle into the aorta." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000004 ! systolic blood pressure [Term] id: CMO:0000008 name: calculated blood pressure namespace: Clinical_Measurement.ontology def: "A blood pressure measurement which has been normalized or adjusted by a mathematical process or computation. Blood pressure is the pressure, or force per area, exerted by circulating blood against the walls of the blood vessels. The pressure is dependent on the energy of the heart action, elasticity of the vessel walls and volume and viscosity of the blood." [Berne and Levy:Berne and Levy Physiology\, 6th Ed, Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000003 ! blood pressure measurement [Term] id: CMO:0000009 name: mean arterial blood pressure namespace: Clinical_Measurement.ontology def: "The average blood pressure within an artery over a specified period of time. It is often calculated using the formula of one third systolic pressure plus two thirds diastolic pressure, or alternatively, using the formula diastolic pressure plus 1/3 of the difference between systolic pressure and diastolic pressure (i.e. 1/3 pulse pressure)." [Berne and Levy:Berne and Levy Physiology 6th Ed] is_a: CMO:0000008 ! calculated blood pressure [Term] id: CMO:0000010 name: developed blood pressure namespace: Clinical_Measurement.ontology def: "A calculated value for the difference between the systolic blood pressure and the diastolic blood pressure at a given point in time when measured in an isolated organ or vessel under conditions where perfusion pressure or flow can be controlled." [PGA:Cardiac_protocol] is_a: CMO:0000008 ! calculated blood pressure [Term] id: CMO:0000011 name: whole body morphological measurement namespace: Clinical_Measurement.ontology def: "Morphological measurement involving the entire body of an organism." [MS:MS] is_a: CMO:0000021 ! body morphological measurement [Term] id: CMO:0000012 name: body weight namespace: Clinical_Measurement.ontology def: "The heaviness or degree to which an entire organism's body is drawn to the earth by gravity." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000011 ! whole body morphological measurement [Term] id: CMO:0000013 name: body length namespace: Clinical_Measurement.ontology def: "A measurement of the longest dimension of a body, typically between two distinct ends of the body." [Dorland:Dorland's Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000011 ! whole body morphological measurement [Term] id: CMO:0000014 name: hip circumference namespace: Clinical_Measurement.ontology def: "Total distance around the body at the region of the body lateral to and including the hip joint or coxa." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hip girth" RELATED [] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-06-17T04:12:19Z [Term] id: CMO:0000015 name: body temperature namespace: Clinical_Measurement.ontology def: "The level of heat in an organism." [Dorland:Dorland's Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000000 ! clinical measurement [Term] id: CMO:0000016 name: heart morphological measurement namespace: Clinical_Measurement.ontology def: "A measurement of the physical form or structure of the heart, the chambered, muscular organ in vertebrates that pumps blood received from the veins into the arteries, thereby maintaining the flow of blood through the entire circulatory system." [Dictionary:The American Heritage Medical Dictionary] comment: This is the term which was just "heart measurement". Since it was under body morphological measurement it seemed to clearly refer to a morphological measurement. I made this term more specific so that another term for "heart measurement" could be added to the ontology above it which would also be a parent to other non-morphological heart-related terms. JRS 2-15-2012. is_a: CMO:0000001 ! cardiovascular measurement is_a: CMO:0000068 ! organ morphological measurement is_a: CMO:0000670 ! heart measurement [Term] id: CMO:0000017 name: heart weight namespace: Clinical_Measurement.ontology def: "The heaviness of the heart (the central cardiac muscle which maintains the circulation of the blood) or the degree to which it is drawn to the earth by gravity." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000016 ! heart morphological measurement [Term] id: CMO:0000018 name: left ventricle developed pressure namespace: Clinical_Measurement.ontology def: "A calculated measurement of the difference between the systolic pressure and the diastolic pressure in the heart left ventricle at a given point in time in an isolated organ or vessel under conditions where perfusion pressure or flow can be controlled." [PGA:Cardiac_protocol] is_a: CMO:0000010 ! developed blood pressure [Term] id: CMO:0000019 name: proximal hind limb circumference namespace: Clinical_Measurement.ontology def: "Distance around the upper portion of the hind limb closest to the body, typically taken at the area of maximum girth." [ms:] synonym: "thigh girth" RELATED [] is_a: CMO:0000388 ! hind limb morphological measurement created_by: mshimoyama creation_date: 2010-06-18T09:49:01Z [Term] id: CMO:0000020 name: waist to hip ratio (WHR) namespace: Clinical_Measurement.ontology def: "the circumference at the level of the navel divided by the circumference at the widest point around the buttock, often used to assess distribution of sub-cutaneous and intra-abdominal adipose tissue distribution" [wikipedia:http\://en.eikipedia.org/wiki/Waist-hip_ratio] synonym: "waist/hip ratio" RELATED [] is_a: CMO:0000022 ! calculated body morphological measurement created_by: mshimoyama creation_date: 2010-06-18T10:40:52Z [Term] id: CMO:0000021 name: body morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the structure or forms of the entire body or parts of the body of an organism." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "anthropometric measurement" RELATED [] synonym: "morphometry" RELATED [] is_a: CMO:0000000 ! clinical measurement [Term] id: CMO:0000022 name: calculated body morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000021 ! body morphological measurement [Term] id: CMO:0000023 name: blood chemistry measurement namespace: Clinical_Measurement.ontology def: "A quantification of a parameter of the chemical composition of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000035 ! blood measurement [Term] id: CMO:0000024 name: differential white blood cell percentage namespace: Clinical_Measurement.ontology def: "The percentage of each type of leukocyte present in a sample of blood for which total white blood cell count was taken, usually 1 cubic mm of peripheral venous blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000375 ! white blood cell percentage created_by: mshimoyama creation_date: 2010-12-13T10:32:58Z [Term] id: CMO:0000025 name: red blood cell count namespace: Clinical_Measurement.ontology def: "The number of red blood cells in a specified volume of blood most commonly 1 cubic millimeter (i.e. 1 microliter) of peripheral venous blood." [Mosby:Mosbys Manual of Diabnostic and Laboratory Tests 4th Ed] synonym: "erythrocyte count" EXACT [] is_a: CMO:0000036 ! blood cell measurement [Term] id: CMO:0000026 name: blood hemoglobin level namespace: Clinical_Measurement.ontology def: "The amount of hemoglobin in a specific volume of blood, expressed as grams per deciliter of whole blood in humans" [MedicineNet:http\://www.medicinenet.com] is_a: CMO:0000028 ! blood protein measurement [Term] id: CMO:0000027 name: white blood cell count namespace: Clinical_Measurement.ontology def: "The number of white blood cells in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "leukocyte count" RELATED [] synonym: "white corpuscle count" RELATED [] is_a: CMO:0000036 ! blood cell measurement [Term] id: CMO:0000028 name: blood protein measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000023 ! blood chemistry measurement [Term] id: CMO:0000029 name: platelet count namespace: Clinical_Measurement.ontology def: "The number of platelets (thrombocytes) in a specified volume of blood, usually expressed as platelets per cubic millimeter of whole blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000921 ! platelet measurement [Term] id: CMO:0000030 name: neutrophil granulocyte count namespace: Clinical_Measurement.ontology def: "The number of neutrophil granulocytes in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000111 ! granulocyte count [Term] id: CMO:0000031 name: lymphocyte count namespace: Clinical_Measurement.ontology def: "The number of lymphocytes in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000366 ! differential white blood cell count [Term] id: CMO:0000032 name: monocyte count namespace: Clinical_Measurement.ontology def: "The number of monocytes in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000366 ! differential white blood cell count [Term] id: CMO:0000033 name: eosinophil granulocyte count namespace: Clinical_Measurement.ontology def: "The number of eosinophil granulocytes in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000111 ! granulocyte count [Term] id: CMO:0000034 name: basophil granulocyte count namespace: Clinical_Measurement.ontology def: "The number of basophil granulocytes in a specified volume of blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000111 ! granulocyte count [Term] id: CMO:0000035 name: blood measurement namespace: Clinical_Measurement.ontology def: "A measurement of the blood, it's contents, cells or other factors contained within the blood." [MS:MS] is_a: CMO:0000000 ! clinical measurement [Term] id: CMO:0000036 name: blood cell measurement namespace: Clinical_Measurement.ontology def: "The quantification of a morphological parameter of blood cells." [RGD:MS] is_a: CMO:0000035 ! blood measurement is_a: CMO:0000227 ! cell measurement [Term] id: CMO:0000037 name: hematocrit (Hct) namespace: Clinical_Measurement.ontology def: "Percentage of total blood volume that is made up of red blood cells." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "packed cell volume" RELATED [] synonym: "packed red blood cell volume" RELATED [] xref: Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed is_a: CMO:0000036 ! blood cell measurement is_a: CMO:0000192 ! blood viscosity measurement [Term] id: CMO:0000038 name: mean corpuscular volume (MCV) namespace: Clinical_Measurement.ontology def: "A measure of the average volume or size of a single red blood cell. It is derived by diving the total volume of packed red blood cells, by the total red blood cell count." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000036 ! blood cell measurement [Term] id: CMO:0000039 name: blood steroid level namespace: Clinical_Measurement.ontology def: "The level of steroids found in a specific volume of blood." [RGD:MS] is_a: CMO:0000023 ! blood chemistry measurement created_by: mshimoyama creation_date: 2009-12-17T10:46:51Z [Term] id: CMO:0000040 name: blood glucocorticoid level namespace: Clinical_Measurement.ontology def: "The amount of glucocorticoids, steroids produced by the adrenal cortex that regulate carbohydrate, lipid and protein metabolism, found in a specific volume of blood." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, RGD:MS] is_a: CMO:0000039 ! blood steroid level created_by: mshimoyama creation_date: 2009-12-17T10:47:50Z [Term] id: CMO:0000041 name: red blood cell distribution width (RDW) namespace: Clinical_Measurement.ontology def: "Measurement of the variation in red blood cell size. It is calculated by dividing the standard deviation of mean corpuscular volume by the mean corpuscular volume and multiplying by 100." [wikipedia:en.wikipedia.org] is_a: CMO:0000036 ! blood cell measurement [Term] id: CMO:0000042 name: plasma glucose level namespace: Clinical_Measurement.ontology def: "The level of glucose found in a specific volume of plasma." [RGD:MS] is_a: CMO:0000046 ! blood glucose level [Term] id: CMO:0000043 name: plasma aspartate amino transferase (AST) level namespace: Clinical_Measurement.ontology def: "The amount of aspartate amino transferase found in a specific volume of plasma." [RGD:MS] is_a: CMO:0000580 ! blood aspartate amino transferase (AST) level [Term] id: CMO:0000044 name: plasma alanine amino transferase (ALT) level namespace: Clinical_Measurement.ontology def: "The amount of plasma alanine amino transferase found in a specific volume of plasma." [RGD:GTH] is_a: CMO:0000574 ! blood alanine amino transferase (ALT) level [Term] id: CMO:0000045 name: plasma alkaline phosphatase level namespace: Clinical_Measurement.ontology def: "The amount of alkaline phosphatase found in a specific volume of plasma." [RGD:GTH] is_a: CMO:0000576 ! blood alkaline phosphatase level [Term] id: CMO:0000046 name: blood glucose level namespace: Clinical_Measurement.ontology def: "The level of glucose found in a specific volume of blood." [RGD:MS] is_a: CMO:0000023 ! blood chemistry measurement created_by: mshimoyama creation_date: 2009-12-17T10:41:54Z [Term] id: CMO:0000047 name: indirect plasma bilirubin level namespace: Clinical_Measurement.ontology def: "Indirect bilirubin is insoluble in water and is carried by the blood to the liver. It is measured by subtracting direct bilirubin level from the total bilirubin level." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "unconjugated bilirubin" RELATED [] xref: Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed is_a: CMO:0000123 ! blood bilirubin level [Term] id: CMO:0000048 name: direct plasma bilirubin level namespace: Clinical_Measurement.ontology def: "The level of Indirect bilirubin which has been carried to the liver where it was conjugated with a glucuronide molecule resulting in direct bilirubin and then secreted from the liver cells." [Mosby:Mosbys Manual for Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000123 ! blood bilirubin level [Term] id: CMO:0000049 name: blood urea nitrogen level namespace: Clinical_Measurement.ontology def: "The level of urea, the chief nitrogenous end product of protein metabolism in whole blood. Urea is formed in the liver from amino acids and from ammonia compounds and can be found in urine, blood, and lymph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "BUN level" RELATED [] is_a: CMO:0000023 ! blood chemistry measurement [Term] id: CMO:0000050 name: blood lipid measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000023 ! blood chemistry measurement [Term] id: CMO:0000051 name: blood total cholesterol level namespace: Clinical_Measurement.ontology is_a: CMO:0000119 ! blood lipoprotein level [Term] id: CMO:0000052 name: blood high density lipoprotein cholesterol level (HDL) namespace: Clinical_Measurement.ontology def: "The amount of high density lipoprotein cholesterol in a specific volume of blood." [RGD:MS] is_a: CMO:0000119 ! blood lipoprotein level [Term] id: CMO:0000053 name: blood low density lipoprotein cholesterol level (LDL) namespace: Clinical_Measurement.ontology def: "The amount of low density lipoprotein cholesterol in a specific volume of blood." [RGD:MS] is_a: CMO:0000119 ! blood lipoprotein level [Term] id: CMO:0000054 name: total plasma protein level namespace: Clinical_Measurement.ontology is_a: CMO:0000028 ! blood protein measurement [Term] id: CMO:0000055 name: plasma globulin level namespace: Clinical_Measurement.ontology def: "A measure related to globulin, a protein insoluble in water but soluble in a saline solution, extensively found in plasma." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000659 ! blood globulin level [Term] id: CMO:0000056 name: plasma albumin level namespace: Clinical_Measurement.ontology is_a: CMO:0000549 ! blood albumin level [Term] id: CMO:0000057 name: serum creatinine level namespace: Clinical_Measurement.ontology def: "The amount of creatinine, a catabolic product of creatine phosphate used in skeletal muscle contraction found in a specified volume of serum." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000538 ! blood creatinine level [Term] id: CMO:0000058 name: plasma phosphate level namespace: Clinical_Measurement.ontology def: "The amount of phosphate ions found in a specific volume of plasma." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "plasma phosphorous level" RELATED [] xref: Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed is_a: CMO:0000504 ! blood phosphate level [Term] id: CMO:0000059 name: plasma chloride level namespace: Clinical_Measurement.ontology def: "The amount of chloride ions found in a specific volume of plasma." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000497 ! blood chloride level [Term] id: CMO:0000060 name: plasma sodium level namespace: Clinical_Measurement.ontology def: "The amount of sodium ions found in a specific volume of plasma." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000499 ! blood sodium level [Term] id: CMO:0000061 name: plasma potassium level namespace: Clinical_Measurement.ontology def: "The amount of potassium ions found in a specific volume of plasma." [Mosby:Mosbys Manual of Diagnostic and Laboratory Test 4th Ed] is_a: CMO:0000496 ! blood potassium level [Term] id: CMO:0000062 name: plasma bicarbonate level namespace: Clinical_Measurement.ontology def: "The amount of carbonic acid dissolved in carbon dioxide and bicarbonate ion found in a specific volume of plasma." [Mosby:Mosbys Manual for Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000498 ! blood bicarbonate level [Term] id: CMO:0000063 name: blood electrolyte measurement namespace: Clinical_Measurement.ontology def: "A quantification of one or more mineral salts found in the blood in the form of electrically charged ions." [Keogh:Nursing Laboratory and Diagnostic Tests Demystified] is_a: CMO:0000023 ! blood chemistry measurement [Term] id: CMO:0000064 name: blood enzyme measurements namespace: Clinical_Measurement.ontology def: "The amount of enzymes found in a specified volume of blood." [RGD:GTH] is_a: CMO:0000028 ! blood protein measurement [Term] id: CMO:0000065 name: plasma calcium level namespace: Clinical_Measurement.ontology def: "The amount of calcium found in a specific volume of plasma." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000502 ! blood calcium level [Term] id: CMO:0000066 name: plasma anion gap namespace: Clinical_Measurement.ontology def: "The difference between the sum of the concentrations of cations and anions found in plasma particularly the sum of sodium plus potassium minus the sum of chloride plus bicarbonate." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000067 ! anion gap [Term] id: CMO:0000067 name: anion gap namespace: Clinical_Measurement.ontology def: "The difference between the sum of the concentrations of blood cations and anions particularly the sum of sodium plus potassium minus the sum of chloride plus bicarbonate." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000063 ! blood electrolyte measurement [Term] id: CMO:0000068 name: organ morphological measurement namespace: Clinical_Measurement.ontology def: "A measurement of the physical form and structure of an organ." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, RGD:JRS] comment: This is the term which used to be just "organ measurement". Since it was under body morphological measurement, it clearly referred to a morphological measurement. Because a term for organ measurement was needed that was not morphological, and since this one already had annotations, I changed the term while keeping the ID and location in the ontology the same. JRS 2-15-2012 is_a: CMO:0000021 ! body morphological measurement is_a: CMO:0000669 ! organ measurement [Term] id: CMO:0000069 name: heart wet weight namespace: Clinical_Measurement.ontology def: "The weight of the heart after removal from the body but without desiccation." [RGD:JRS] is_a: CMO:0000017 ! heart weight [Term] id: CMO:0000070 name: heart dry weight namespace: Clinical_Measurement.ontology def: "The weight of the heart after desiccation." [RGD:JRS] is_a: CMO:0000017 ! heart weight [Term] id: CMO:0000071 name: heart left ventricle wet weight namespace: Clinical_Measurement.ontology alt_id: CMO:0000655 def: "The weight of the lower left chamber of the heart, which pumps oxygenated blood through the aorta into the systemic arteries, after removal from the body and separation from the rest of the heart but without desiccation." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000069 ! heart wet weight is_a: CMO:0000776 ! heart left ventricle weight [Term] id: CMO:0000072 name: heart right ventricle wet weight namespace: Clinical_Measurement.ontology alt_id: CMO:0000624 def: "The weight of the lower right chamber of the heart, which pumps venous blood through the pulmonary trunk and arteries to the capillaries of the lung, after removal from the body and separation from the rest of the heart but without desiccation." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000069 ! heart wet weight is_a: CMO:0000777 ! heart right ventricle weight [Term] id: CMO:0000073 name: calculated heart weight namespace: Clinical_Measurement.ontology is_a: CMO:0000017 ! heart weight [Term] id: CMO:0000074 name: heart weight to body weight ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of the heart, the chambered, muscular organ in vertebrates that pumps blood received from the veins into the arteries, thereby maintaining the flow of blood through the entire circulatory system, is divided by the total weight of the body and presented as a ratio thus normalizing it to body weight." [Dictionary:The American Heritage Medical Dictionary, RGD:JRS] is_a: CMO:0000073 ! calculated heart weight [Term] id: CMO:0000075 name: heart weight as percentage of body weight namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of the heart, the chambered, muscular organ in vertebrates that pumps blood received from the veins into the arteries, thereby maintaining the flow of blood through the entire circulatory system, is presented as percentage of the total weight of the body, thus normalizing it to body weight." [Dictionary:The American Heritage Medical Dictionary, RGD:JRS] is_a: CMO:0000073 ! calculated heart weight [Term] id: CMO:0000076 name: aorta weight namespace: Clinical_Measurement.ontology def: "The weight of the aorta, the main trunk form which the arterial system proceeds. Weight is the heaviness or degree to which a body is drawn to the earth by gravity." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000077 ! blood vessel measurement [Term] id: CMO:0000077 name: blood vessel measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000001 ! cardiovascular measurement [Term] id: CMO:0000078 name: body length, nose to tail namespace: Clinical_Measurement.ontology def: "The distance between the tip of the nose to the very end of the appendage extending from the end of the trunk of an organism." [MS:MS] is_a: CMO:0000013 ! body length [Term] id: CMO:0000079 name: body length, nose to rump namespace: Clinical_Measurement.ontology def: "The distance between the tip of the nose to the end of the back end of the trunk of an organism." [MS:MS] is_a: CMO:0000013 ! body length [Term] id: CMO:0000080 name: renal/urinary measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000000 ! clinical measurement [Term] id: CMO:0000081 name: kidney weight namespace: Clinical_Measurement.ontology def: "The weight of one or both kidneys, the organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes." [Dictionary:The American Heritage Medical Dictionary] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000087 ! kidney morphological measurement [Term] id: CMO:0000082 name: right kidney wet weight namespace: Clinical_Measurement.ontology def: "The weight of the right kidney, the organ which lies on the right side of the body and functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, after removal from the body but without desiccation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000084 ! single kidney wet weight [Term] id: CMO:0000083 name: left kidney wet weight namespace: Clinical_Measurement.ontology def: "The weight of the left kidney, the organ which lies on the left side of the body and functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, after removal from the body but without desiccation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000084 ! single kidney wet weight [Term] id: CMO:0000084 name: single kidney wet weight namespace: Clinical_Measurement.ontology def: "The weight of a single kidney, the organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, after removal from the body but without desiccation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000169 ! kidney wet weight [Term] id: CMO:0000085 name: both kidneys wet weight namespace: Clinical_Measurement.ontology def: "The weight of both kidneys, the organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, after removal from the body but without desiccation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000169 ! kidney wet weight [Term] id: CMO:0000086 name: liver/biliary measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000000 ! clinical measurement [Term] id: CMO:0000087 name: kidney morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of one or both kidneys, the organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000068 ! organ morphological measurement is_a: CMO:0000091 ! renal/urinary morphological measurement is_a: CMO:0000906 ! kidney measurement [Term] id: CMO:0000088 name: abdominal fat pad weight namespace: Clinical_Measurement.ontology def: "Weight of the abdominal area consisting of the mesenteric, retroperitoneal and epididymal fat pads." [ms:] is_a: CMO:0000313 ! abdominal fat weight created_by: mshimoyama creation_date: 2010-06-23T04:12:38Z [Term] id: CMO:0000089 name: body fat morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of adipose tissue in entire body or region of body of an organism." [MS:MS, XX:] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-06-23T04:14:20Z [Term] id: CMO:0000090 name: liver/biliary morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000086 ! liver/biliary measurement [Term] id: CMO:0000091 name: renal/urinary morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000080 ! renal/urinary measurement [Term] id: CMO:0000092 name: liver weight namespace: Clinical_Measurement.ontology def: "Measurement of the weight of the liver, the large abdominal organ/gland which functions in the storage and filtration of blood, secretion of bile, detoxification of noxious substances, synthesis and storage of glycogen, synthesis and breakdown of fats and temporary storage of fatty acids, and synthesis of serum proteins." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000093 ! liver morphological measurement [Term] id: CMO:0000093 name: liver morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the liver, the large abdominal organ/gland which functions in the storage and filtration of blood, secretion of bile, detoxification of noxious substances, synthesis and storage of glycogen, synthesis and breakdown of fats and temporary storage of fatty acids, and synthesis of serum proteins." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000068 ! organ morphological measurement is_a: CMO:0000090 ! liver/biliary morphological measurement [Term] id: CMO:0000094 name: respiratory system measurement namespace: Clinical_Measurement.ontology def: "A measurement to assess the morphological or physiological state of the respiratory system or portion of the respiratory system." [MS:MS] is_a: CMO:0000000 ! clinical measurement [Term] id: CMO:0000095 name: abdominal fat pad weight to body weight ratio namespace: Clinical_Measurement.ontology def: "The weight of the encapsulated adipose tissue found in the abdomen compared to the weight of the entire body, usually expressed as a percentage." [MS:MS] synonym: "adiposity index" RELATED [] is_a: CMO:0000867 ! calculated abdominal fat pad weight created_by: mshimoyama creation_date: 2010-06-23T04:14:38Z [Term] id: CMO:0000096 name: lung weight namespace: Clinical_Measurement.ontology alt_id: CMO:0000631 def: "The weight of the lung, the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed.] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000094 ! respiratory system measurement is_a: CMO:0000858 ! lung morphological measurement [Term] id: CMO:0000097 name: lung wet weight namespace: Clinical_Measurement.ontology def: "The weight, after removal from the body but without desiccation, of one or both lungs, the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed.] is_a: CMO:0000096 ! lung weight [Term] id: CMO:0000098 name: lung dry weight namespace: Clinical_Measurement.ontology def: "The weight, after desiccation, of one or both lungs, the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed.] is_a: CMO:0000096 ! lung weight [Term] id: CMO:0000099 name: right lung wet weight namespace: Clinical_Measurement.ontology def: "The weight, after removal from the body but without desiccation, of the single lung located on the right side of the body. The lung is the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000632 ! single lung wet weight [Term] id: CMO:0000100 name: left lung wet weight namespace: Clinical_Measurement.ontology def: "The weight, after removal from the body but without desiccation, of the single lung located on the left side of the body. The lung is the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000632 ! single lung wet weight [Term] id: CMO:0000101 name: calculated lung weight namespace: Clinical_Measurement.ontology is_a: CMO:0000096 ! lung weight [Term] id: CMO:0000102 name: lung weight, dry/body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000101 ! calculated lung weight [Term] id: CMO:0000103 name: right lung weight/left lung weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000101 ! calculated lung weight [Term] id: CMO:0000104 name: single lung dry weight namespace: Clinical_Measurement.ontology def: "The weight, after desiccation, of one individual lung, the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed.] is_a: CMO:0000098 ! lung dry weight [Term] id: CMO:0000105 name: body mass index (BMI) namespace: Clinical_Measurement.ontology def: "A measurement to related body weight to height in an organisms typically calculated as the weight of an individual divided by the height of that individual squared." [MedicineNet:MedicineNet.comf>] synonym: "BMI" RELATED [] is_a: CMO:0000312 ! calculated body fat morphological measurement [Term] id: CMO:0000106 name: body height namespace: Clinical_Measurement.ontology def: "The vertical measurement of a body." [Dorland:Dorland's Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000011 ! whole body morphological measurement [Term] id: CMO:0000107 name: tissue composition measurement namespace: Clinical_Measurement.ontology def: "A measurement that indicates the compositional nature of a tissue or set of tissues." [MS:MS] is_a: CMO:0000000 ! clinical measurement created_by: mshimoyama creation_date: 2009-12-17T10:53:44Z [Term] id: CMO:0000108 name: heart right ventricle weight to left ventricle weight ratio namespace: Clinical_Measurement.ontology def: "A calculated value which compares the weight of the right ventricle, the lower chamber of the right side of the heart, which pumps venous blood through the pulmonary trunk and arteries to the capillaries of the lung, with the weight of the left ventricle, the lower chamber of the left side of the heart, which pumps oxygenated blood out through the aorta to all the tissues of the body, and presents it as a ratio." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0001123 ! calculated heart left ventricle weight is_a: CMO:0001124 ! calculated heart right ventricle weight created_by: mshimoyama creation_date: 2009-12-17T08:17:35Z [Term] id: CMO:0000109 name: B lymphocyte count namespace: Clinical_Measurement.ontology def: "The number of B lymphocytes in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000031 ! lymphocyte count created_by: mshimoyama creation_date: 2009-12-17T08:20:56Z [Term] id: CMO:0000110 name: T lymphocyte count namespace: Clinical_Measurement.ontology def: "The number of T lymphocytes in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000031 ! lymphocyte count created_by: mshimoyama creation_date: 2009-12-17T08:21:10Z [Term] id: CMO:0000111 name: granulocyte count namespace: Clinical_Measurement.ontology def: "The number of granulocytes (polymorphonuclear leukocytes) in a specified volume of blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000366 ! differential white blood cell count created_by: mshimoyama creation_date: 2009-12-17T08:22:51Z [Term] id: CMO:0000112 name: plasma angiotensin converting enzyme (ACE) level namespace: Clinical_Measurement.ontology def: "The amount of angiotensin converting enzyme found in a specific volume of blood." [RGD:GTH] is_a: CMO:0000578 ! blood angiotensin converting enzyme (ACE) level created_by: mshimoyama creation_date: 2009-12-17T09:04:01Z [Term] id: CMO:0000113 name: direct renin activity level namespace: Clinical_Measurement.ontology def: "The amount of immunologically detectable renin found in a specific volume of blood." [RGD:GTH] is_a: CMO:0000115 ! blood renin level created_by: mshimoyama creation_date: 2009-12-17T09:07:12Z [Term] id: CMO:0000114 name: ventilation measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2011-09-21T11:16:38Z [Term] id: CMO:0000115 name: blood renin level namespace: Clinical_Measurement.ontology def: "The amount of renin, an enzyme which catalyzes cleavage of the leucine-leucine bond in angiotensinogen to generate angiotensin I, in a specified volume of blood." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000064 ! blood enzyme measurements created_by: mshimoyama creation_date: 2009-12-17T09:37:06Z [Term] id: CMO:0000116 name: plasma renin activity level namespace: Clinical_Measurement.ontology def: "An estimation of the amount of renin in a specific volume of plasma calculated from the rate of formation of angiotensin I or II." [RGD:MS] synonym: "random plasma renin level" RELATED [] is_a: CMO:0000115 ! blood renin level created_by: mshimoyama creation_date: 2009-12-17T09:37:33Z [Term] id: CMO:0000117 name: blood free fatty acids level namespace: Clinical_Measurement.ontology def: "The amount of free fatty acids found in a specific volume of blood." [RGD:MS] is_a: CMO:0000050 ! blood lipid measurement created_by: mshimoyama creation_date: 2009-12-17T10:18:31Z [Term] id: CMO:0000118 name: blood triglyceride level namespace: Clinical_Measurement.ontology def: "The amount of triglycerides in a specific volume of blood." [RGD:MS] is_a: CMO:0000050 ! blood lipid measurement created_by: mshimoyama creation_date: 2009-12-17T10:19:44Z [Term] id: CMO:0000119 name: blood lipoprotein level namespace: Clinical_Measurement.ontology def: "The amount of lipoproteins in a specific volume of blood." [RGD:MS] is_a: CMO:0000028 ! blood protein measurement created_by: mshimoyama creation_date: 2009-12-17T10:21:58Z [Term] id: CMO:0000120 name: plasma apolipoprotein level namespace: Clinical_Measurement.ontology def: "The amount of proteins that bind to lipids found in a specific volume of plasma." [RGD:MS] is_a: CMO:0000518 ! blood apolipoprotein level created_by: mshimoyama creation_date: 2009-12-17T10:25:02Z [Term] id: CMO:0000121 name: blood angiotensin II level namespace: Clinical_Measurement.ontology def: "The amount of angiotensin II in a specific volume of blood." [RGD:MS] is_a: CMO:0000064 ! blood enzyme measurements created_by: mshimoyama creation_date: 2009-12-17T10:28:12Z [Term] id: CMO:0000122 name: mean corpuscular hemoglobin level namespace: Clinical_Measurement.ontology def: "The average amount of hemoglobin per red blood cell as a caculated value by dividing the total mass of hemoglobin by the number of red blood cells in a volume of blood, often expressed as picograms per cell" [wikipedia:http\://en.wikipedia.org/wiki/Mean_corpuscular_hemoglovin] is_a: CMO:0000026 ! blood hemoglobin level created_by: mshimoyama creation_date: 2009-12-17T10:32:27Z [Term] id: CMO:0000123 name: blood bilirubin level namespace: Clinical_Measurement.ontology def: "The amount of bilirubin found in a specific volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000023 ! blood chemistry measurement created_by: mshimoyama creation_date: 2009-12-17T10:35:20Z [Term] id: CMO:0000124 name: blood sex steroid level namespace: Clinical_Measurement.ontology def: "The amount of sex steroids, hormones which interact with vertebrate androgen or estrogen receptors, found in a specific volume of blood." [RGD:MS] is_a: CMO:0000039 ! blood steroid level created_by: mshimoyama creation_date: 2009-12-17T10:48:53Z [Term] id: CMO:0000125 name: urine creatinine level namespace: Clinical_Measurement.ontology is_a: CMO:0000766 ! urine creatinine measurement created_by: mshimoyama creation_date: 2009-12-17T11:00:47Z [Term] id: CMO:0000126 name: bioimpedance namespace: Clinical_Measurement.ontology def: "The impedance, or opposition, of a section of tissue to passage of electric current." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000107 ! tissue composition measurement created_by: mshimoyama creation_date: 2009-12-17T10:56:11Z [Term] id: CMO:0000127 name: muscle morphological measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the physical form or structure of the skeletal, smooth and/or heart muscles of the body." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000021 ! body morphological measurement is_a: CMO:0001158 ! muscle measurement created_by: mshimoyama creation_date: 2010-06-24T01:24:08Z [Term] id: CMO:0000128 name: urine potassium level namespace: Clinical_Measurement.ontology def: "The amount of potassium ions in a specified volume of urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000593 ! urine electrolyte level created_by: mshimoyama creation_date: 2009-12-17T11:01:17Z [Term] id: CMO:0000129 name: urine sodium level namespace: Clinical_Measurement.ontology def: "The amount of sodium ions in a specified volume of urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000593 ! urine electrolyte level created_by: mshimoyama creation_date: 2009-12-17T11:01:31Z [Term] id: CMO:0000130 name: urine albumin level namespace: Clinical_Measurement.ontology def: "The amount of albumin in a specified volume of urine. Urine albumin levels which are above normal but not detectable with routine protein testing are referred to as microalbuminuria." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] synonym: "urine microalbumin level" RELATED [] is_a: CMO:0000591 ! urine protein level created_by: mshimoyama creation_date: 2009-12-17T11:01:46Z [Term] id: CMO:0000131 name: muscle weight namespace: Clinical_Measurement.ontology def: "Weight of muscle, an organ which contracts to produce movement." [Dorland:Dorlands Illustrated Medical Dictionary] is_a: CMO:0000127 ! muscle morphological measurement created_by: mshimoyama creation_date: 2010-06-24T01:24:20Z [Term] id: CMO:0000132 name: minute ventilation (VE) namespace: Clinical_Measurement.ontology def: "Total volume of gas inhaled and exhaled from the lungs per one minute." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] is_a: CMO:0000114 ! ventilation measurement created_by: mshimoyama creation_date: 2009-12-17T11:12:05Z [Term] id: CMO:0000133 name: end-tidal partial pressure of carbon dioxide (PETCO2) namespace: Clinical_Measurement.ontology def: "The amount of carbon dioxide present in air exhaled from the lungs." [wikipedia:en.wikipedia.org] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2009-12-17T11:13:29Z [Term] id: CMO:0000134 name: maximal carbon dioxide production (VCO2) namespace: Clinical_Measurement.ontology def: "The rate of elimination of carbon dioxide from the lungs." [RGD:MS] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2009-12-17T11:13:53Z [Term] id: CMO:0000135 name: maximal oxygen consumption (VO2) namespace: Clinical_Measurement.ontology def: "Maximum capacity of an individual's body to transport and utilize oxygen, usually measured during exercise as volume of oxygen per unit of time." [wikipedia:en.wikipedia.org] synonym: "aerobic capacity" RELATED [] synonym: "maximal oxygen uptake" RELATED [] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2009-12-17T11:14:04Z [Term] id: CMO:0000136 name: brain morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the brain, the component of the central nervous system enclosed within the cranium which is the primary center for the regulation and control of bodily activities." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000068 ! organ morphological measurement is_a: CMO:0000911 ! brain measurement created_by: RNigam creation_date: 2010-05-17T01:26:52Z [Term] id: CMO:0000137 name: brain weight namespace: Clinical_Measurement.ontology synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000136 ! brain morphological measurement created_by: RNigam creation_date: 2010-05-17T01:27:51Z [Term] id: CMO:0000138 name: calculated brain weight namespace: Clinical_Measurement.ontology is_a: CMO:0000137 ! brain weight created_by: RNigam creation_date: 2010-05-17T01:28:11Z [Term] id: CMO:0000139 name: brain weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000138 ! calculated brain weight created_by: RNigam creation_date: 2010-05-17T01:28:51Z [Term] id: CMO:0000140 name: both kidneys weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000160 ! calculated kidney weight created_by: RNigam creation_date: 2010-05-17T01:48:45Z [Term] id: CMO:0000141 name: liver weight as percentage of body weight namespace: Clinical_Measurement.ontology def: "Weight of the liver in comparison to whole body weight expressed as percentage." [MS:MS] is_a: CMO:0000157 ! calculated liver weight created_by: RNigam creation_date: 2010-05-17T01:50:12Z [Term] id: CMO:0000142 name: adrenal gland morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of one or both of the endocrine glands located just above the kidneys which produce steroid hormones, epinephrine and norepinephrine." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000068 ! organ morphological measurement created_by: RNigam creation_date: 2010-05-17T01:59:03Z [Term] id: CMO:0000143 name: adrenal gland weight namespace: Clinical_Measurement.ontology synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000142 ! adrenal gland morphological measurement created_by: RNigam creation_date: 2010-05-17T01:59:36Z [Term] id: CMO:0000144 name: calculated adrenal gland weight namespace: Clinical_Measurement.ontology is_a: CMO:0000143 ! adrenal gland weight created_by: RNigam creation_date: 2010-05-17T02:00:52Z [Term] id: CMO:0000145 name: single adrenal gland weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000144 ! calculated adrenal gland weight created_by: RNigam creation_date: 2010-05-17T02:02:00Z [Term] id: CMO:0000146 name: spleen morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the spleen, the highly vascular lymphoid organ which serves to store blood, disintegrate old blood cells, filter foreign substances from the blood, and to produce lymphocytes." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000068 ! organ morphological measurement created_by: RNigam creation_date: 2010-05-17T02:02:55Z [Term] id: CMO:0000147 name: spleen weight namespace: Clinical_Measurement.ontology def: "The weight of the spleen, the highly vascular lymphoid organ which serves to store blood, disintegrate old blood cells, filter foreign substances from the blood, and to produce lymphocytes." [Dictionary:The American Heritage Medical Dictionary] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000146 ! spleen morphological measurement created_by: RNigam creation_date: 2010-05-17T02:03:24Z [Term] id: CMO:0000148 name: calculated spleen weight namespace: Clinical_Measurement.ontology is_a: CMO:0000147 ! spleen weight created_by: RNigam creation_date: 2010-05-17T02:04:40Z [Term] id: CMO:0000149 name: spleen weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000148 ! calculated spleen weight created_by: RNigam creation_date: 2010-05-17T02:04:58Z [Term] id: CMO:0000150 name: male reproductive organ morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the form or structure of any organ which is part of the complex of male gonads, associated ducts, and external genitalia concerned with sexual reproduction." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000068 ! organ morphological measurement created_by: RNigam creation_date: 2010-05-17T02:05:45Z [Term] id: CMO:0000151 name: testis weight namespace: Clinical_Measurement.ontology def: "The weight of one or both of the paired egg-shaped glands normally situated in the scrotum, in which the spermatozoa develop." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000150 ! male reproductive organ morphological measurement created_by: RNigam creation_date: 2010-05-17T02:06:19Z [Term] id: CMO:0000152 name: calculated testis weight namespace: Clinical_Measurement.ontology def: "The weight of one or both of the testes, the paired egg-shaped glands normally situated in the scrotum, in which the spermatozoa develop, which has been normalized or adjusted by a mathmatical process or computation." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000151 ! testis weight created_by: RNigam creation_date: 2010-05-17T02:06:47Z [Term] id: CMO:0000153 name: testis weight as percentage of body weight namespace: Clinical_Measurement.ontology def: "The weight of one or both testes, the paired egg-shaped glands normally situated in the scrotum, in which the spermatozoa develop, expressed as a percentage of the total body weight of the organism." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000152 ! calculated testis weight created_by: RNigam creation_date: 2010-05-17T02:07:21Z [Term] id: CMO:0000154 name: brain dry weight namespace: Clinical_Measurement.ontology def: "Weight of the brain after desiccation." [RGD:JRS] is_a: CMO:0000137 ! brain weight created_by: RNigam creation_date: 2010-05-25T03:46:42Z [Term] id: CMO:0000155 name: brain wet weight namespace: Clinical_Measurement.ontology def: "The weight of the brain after removal from the body but without desiccation." [RGD:JRS] is_a: CMO:0000137 ! brain weight created_by: RNigam creation_date: 2010-05-25T03:47:01Z [Term] id: CMO:0000156 name: lung weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000101 ! calculated lung weight created_by: RNigam creation_date: 2010-05-25T03:48:54Z [Term] id: CMO:0000157 name: calculated liver weight namespace: Clinical_Measurement.ontology is_a: CMO:0000092 ! liver weight created_by: RNigam creation_date: 2010-05-25T03:54:46Z [Term] id: CMO:0000158 name: liver wet weight namespace: Clinical_Measurement.ontology def: "The weight after removal from the body but without desiccation of the liver, the large abdominal organ/gland which functions in the storage and filtration of blood, secretion of bile, detoxification of noxious substances, synthesis and storage of glycogen, synthesis and breakdown of fats and temporary storage of fatty acids, and synthesis of serum proteins." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed.] is_a: CMO:0000092 ! liver weight created_by: RNigam creation_date: 2010-05-25T03:55:21Z [Term] id: CMO:0000159 name: liver dry weight namespace: Clinical_Measurement.ontology def: "The weight after desiccation of the liver, the large abdominal organ/gland which functions in the storage and filtration of blood, secretion of bile, detoxification of noxious substances, synthesis and storage of glycogen, synthesis and breakdown of fats and temporary storage of fatty acids, and synthesis of serum proteins." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed.] is_a: CMO:0000092 ! liver weight created_by: RNigam creation_date: 2010-05-25T03:55:36Z [Term] id: CMO:0000160 name: calculated kidney weight namespace: Clinical_Measurement.ontology is_a: CMO:0000081 ! kidney weight created_by: RNigam creation_date: 2010-05-25T04:01:05Z [Term] id: CMO:0000161 name: left adrenal gland wet weight namespace: Clinical_Measurement.ontology def: "The weight of an individual left adrenal gland, that is the gland located on the left side of the body when viewed from the organism's perspective, after removal from the body but without desiccation." [RGD:JRS] is_a: CMO:0000163 ! single adrenal gland wet weight created_by: RNigam creation_date: 2010-05-25T04:03:05Z [Term] id: CMO:0000162 name: right adrenal gland wet weight namespace: Clinical_Measurement.ontology def: "The weight of an individual right adrenal gland, that is the gland located on the right side of the body when viewed from the organism's perspective, after removal from the body but without desiccation." [RGD:JRS] is_a: CMO:0000163 ! single adrenal gland wet weight created_by: RNigam creation_date: 2010-05-25T04:03:23Z [Term] id: CMO:0000163 name: single adrenal gland wet weight namespace: Clinical_Measurement.ontology def: "Weight of an individual adrenal gland after removal from the body but without desiccation." [RGD:JRS] is_a: CMO:0000167 ! adrenal gland wet weight created_by: RNigam creation_date: 2010-05-25T04:03:40Z [Term] id: CMO:0000164 name: both adrenal glands wet weight namespace: Clinical_Measurement.ontology def: "Weight of both adrenal glands together after removal from the body but without desiccation." [RGD:JRS] is_a: CMO:0000167 ! adrenal gland wet weight created_by: RNigam creation_date: 2010-05-25T04:04:32Z [Term] id: CMO:0000165 name: both lungs wet weight namespace: Clinical_Measurement.ontology def: "The weight together, after removal from the body but without desiccation, of both lungs, the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed.] is_a: CMO:0000097 ! lung wet weight created_by: RNigam creation_date: 2010-05-25T04:07:21Z [Term] id: CMO:0000167 name: adrenal gland wet weight namespace: Clinical_Measurement.ontology def: "Weight of adrenal gland(s) after removal from the body but without desiccation." [RGD:JRS] is_a: CMO:0000143 ! adrenal gland weight created_by: RNigam creation_date: 2010-05-25T04:09:41Z [Term] id: CMO:0000168 name: adrenal gland dry weight namespace: Clinical_Measurement.ontology def: "Weight of the adrenal gland after desiccation." [RGD:JRS] is_a: CMO:0000143 ! adrenal gland weight created_by: RNigam creation_date: 2010-05-25T04:10:01Z [Term] id: CMO:0000169 name: kidney wet weight namespace: Clinical_Measurement.ontology def: "The weight of one or both kidneys, the organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, after removal from the body but without desiccation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000081 ! kidney weight created_by: RNigam creation_date: 2010-05-25T04:11:18Z [Term] id: CMO:0000170 name: kidney dry weight namespace: Clinical_Measurement.ontology def: "The weight of one or both kidneys, the organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, after desiccation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000081 ! kidney weight created_by: RNigam creation_date: 2010-05-25T04:11:36Z [Term] id: CMO:0000171 name: spleen wet weight namespace: Clinical_Measurement.ontology def: "The weight of the spleen after removal from the body but without desiccation. The spleen is the highly vascular lymphoid organ which serves to store blood, disintegrate old blood cells, filter foreign substances from the blood, and to produce lymphocytes." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000147 ! spleen weight created_by: RNigam creation_date: 2010-05-26T08:52:23Z [Term] id: CMO:0000172 name: spleen dry weight namespace: Clinical_Measurement.ontology def: "The weight of the spleen after desiccation. The spleen is the highly vascular lymphoid organ which serves to store blood, disintegrate old blood cells, filter foreign substances from the blood, and to produce lymphocytes." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000147 ! spleen weight created_by: RNigam creation_date: 2010-05-26T08:52:42Z [Term] id: CMO:0000173 name: testis wet weight namespace: Clinical_Measurement.ontology def: "The weight after removal from the body but without desiccation of one or both of the testes, the paired egg-shaped glands normally situated in the scrotum, in which the spermatozoa develop." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000151 ! testis weight created_by: RNigam creation_date: 2010-05-26T08:55:19Z [Term] id: CMO:0000174 name: single testis dry weight namespace: Clinical_Measurement.ontology is_a: CMO:0000856 ! testis dry weight created_by: RNigam creation_date: 2010-05-26T08:55:31Z [Term] id: CMO:0000175 name: both testes wet weight namespace: Clinical_Measurement.ontology is_a: CMO:0000173 ! testis wet weight created_by: RNigam creation_date: 2010-05-26T08:55:57Z [Term] id: CMO:0000176 name: single testis wet weight namespace: Clinical_Measurement.ontology is_a: CMO:0000173 ! testis wet weight created_by: RNigam creation_date: 2010-05-26T08:56:13Z [Term] id: CMO:0000177 name: right testis wet weight namespace: Clinical_Measurement.ontology is_a: CMO:0000176 ! single testis wet weight created_by: RNigam creation_date: 2010-05-26T08:56:32Z [Term] id: CMO:0000178 name: left testis wet weight namespace: Clinical_Measurement.ontology is_a: CMO:0000176 ! single testis wet weight created_by: RNigam creation_date: 2010-05-26T08:56:47Z [Term] id: CMO:0000179 name: blood vessel diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of a blood vessel, passing through its center and ending on either side at either the inner surface or outer surface of the blood vessel wall." [RGD:JRS] is_a: CMO:0000077 ! blood vessel measurement created_by: mshimoyama creation_date: 2010-06-10T09:05:26Z [Term] id: CMO:0000180 name: ejection fraction namespace: Clinical_Measurement.ontology def: "percentage of blood pumped out of the left ventricle with each heart beat" [ms:] is_a: CMO:0000195 ! circulation measurement created_by: mshimoyama creation_date: 2010-06-10T09:06:25Z [Term] id: CMO:0000181 name: end-systolic volume namespace: Clinical_Measurement.ontology def: "volume of blood left in a ventricle at end of contraction" [ms:] is_a: CMO:0000195 ! circulation measurement created_by: mshimoyama creation_date: 2010-06-10T09:08:28Z [Term] id: CMO:0000182 name: head morphological measurement namespace: Clinical_Measurement.ontology def: "Morphological measurement of the top most or forward most division of an organism's body usually containing the brain and sense organs." [MS:MS] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:12:14Z [Term] id: CMO:0000183 name: head circumference namespace: Clinical_Measurement.ontology def: "Total distance around the head of an organism." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000182 ! head morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:12:29Z [Term] id: CMO:0000184 name: skull volume namespace: Clinical_Measurement.ontology def: "Total volume or capacity of the bony or cartilaginous framework of the head." [wikipedia:en.wikipedia.org] is_a: CMO:0000182 ! head morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:12:47Z [Term] id: CMO:0000185 name: limb morphological measurement namespace: Clinical_Measurement.ontology def: "Morphological measurement of one of paired appendages used for locomotion or grasping." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:27:49Z [Term] id: CMO:0000186 name: distal hind limb circumference namespace: Clinical_Measurement.ontology is_a: CMO:0000388 ! hind limb morphological measurement created_by: mshimoyama creation_date: 2010-12-17T01:17:15Z [Term] id: CMO:0000187 name: distal forelimb circumference namespace: Clinical_Measurement.ontology is_a: CMO:0000387 ! forelimb morphological measurement created_by: mshimoyama creation_date: 2010-12-17T01:18:12Z [Term] id: CMO:0000188 name: forelimb length namespace: Clinical_Measurement.ontology is_a: CMO:0000387 ! forelimb morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:28:41Z [Term] id: CMO:0000189 name: hind limb length namespace: Clinical_Measurement.ontology is_a: CMO:0000388 ! hind limb morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:28:52Z [Term] id: CMO:0000190 name: tail morphological measurement namespace: Clinical_Measurement.ontology def: "Any morphological measurement of the flexible appendage extending outward from the trunk or main part of the body." [MS:MS] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:29:22Z [Term] id: CMO:0000191 name: tail length namespace: Clinical_Measurement.ontology def: "The distance from the tip of the extended, flexible appendage at the rear of a vertebrate to the point of contact with the trunk or main body." [MS:MS] is_a: CMO:0000190 ! tail morphological measurement created_by: mshimoyama creation_date: 2010-06-10T09:29:39Z [Term] id: CMO:0000192 name: blood viscosity measurement namespace: Clinical_Measurement.ontology def: "Measurement of the resistance of blood to flow caused by friction of its component molecules as they slide past one another." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000035 ! blood measurement created_by: mshimoyama creation_date: 2010-06-10T09:31:33Z [Term] id: CMO:0000193 name: intramuscular fat weight namespace: Clinical_Measurement.ontology def: "A measurement of the amount, by weight, of the small deposits of fat located within a specified amount of skeletal muscle." [Wikipedia:http\://en.wikipedia.org/wiki/Intramuscular_fat] synonym: "intramuscular adipose tissue weight" RELATED [] synonym: "intramuscular adipose weight" RELATED [] is_a: CMO:0000208 ! intramuscular fat morphological measurement created_by: mshimoyama creation_date: 2010-06-24T01:24:38Z [Term] id: CMO:0000194 name: blood viscoelasticity namespace: Clinical_Measurement.ontology def: "A measurement to describe the combined properties of viscosity and elasticity of blood affected by the energy dissipated during flow energy stored during flow." [vilastic:www.vilastic.com] is_a: CMO:0000035 ! blood measurement created_by: mshimoyama creation_date: 2010-06-10T09:34:10Z [Term] id: CMO:0000195 name: circulation measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000001 ! cardiovascular measurement created_by: mshimoyama creation_date: 2010-06-10T09:38:29Z [Term] id: CMO:0000196 name: blood flow rate namespace: Clinical_Measurement.ontology def: "The speed at which blood flows through a vessel or organ expressed as volume per unit of time." [ms:] is_a: CMO:0000195 ! circulation measurement created_by: mshimoyama creation_date: 2010-06-10T09:38:42Z [Term] id: CMO:0000197 name: cardiac output measurement namespace: Clinical_Measurement.ontology def: "the volume of blood pumped from the right or left ventricle per minute, also used to calculate - stroke volume X heart rate" [ms:] is_a: CMO:0000195 ! circulation measurement created_by: mshimoyama creation_date: 2010-06-10T09:51:29Z [Term] id: CMO:0000198 name: arterial blood flow rate namespace: Clinical_Measurement.ontology def: "The volume of blood flowing through an artery per unit time." [RGD:JRS] is_a: CMO:0000196 ! blood flow rate created_by: mshimoyama creation_date: 2010-06-10T09:56:23Z [Term] id: CMO:0000199 name: venous blood flow rate namespace: Clinical_Measurement.ontology def: "The volume of blood passing through a vein per unit time." [RGD:JRS] is_a: CMO:0000196 ! blood flow rate created_by: mshimoyama creation_date: 2010-06-10T09:56:38Z [Term] id: CMO:0000200 name: intramuscular fat weight as percent of body weight namespace: Clinical_Measurement.ontology def: "A calculated measurement in which the weight of the small deposits of fat located within and throughout skeletal muscle is presented as a percentage of the total weight of the body thus normalizing it to body weight." [Dictionary:The Online American Heritage Dictionary of the English Language, Wikipedia:http\://en.wikipedia.org/wiki/Intramuscular_fat] synonym: "intramuscular adipose weight as percent of body weight" RELATED [] is_a: CMO:0001164 ! calculated intramuscular fat weight created_by: mshimoyama creation_date: 2010-06-24T01:24:52Z [Term] id: CMO:0000201 name: vessel shear stress measurement namespace: Clinical_Measurement.ontology def: "movement of blood along the solid wall of a vessel, often represented by the Hagen-Poiseuille equation" [ms:] is_a: CMO:0000195 ! circulation measurement created_by: mshimoyama creation_date: 2010-06-10T10:04:04Z [Term] id: CMO:0000202 name: in vitro vessel shear stress measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000201 ! vessel shear stress measurement created_by: mshimoyama creation_date: 2010-06-10T10:51:43Z [Term] id: CMO:0000203 name: in vivo vessel shear stress measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000201 ! vessel shear stress measurement created_by: mshimoyama creation_date: 2010-06-10T10:52:06Z [Term] id: CMO:0000204 name: blood coagulation measurement namespace: Clinical_Measurement.ontology def: "Measurement to assess the sequential process through which multiple factors of the blood interact to form an insoluble fibrin clot." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000035 ! blood measurement created_by: mshimoyama creation_date: 2010-06-10T10:53:38Z [Term] id: CMO:0000205 name: in vivo coagulation measurement namespace: Clinical_Measurement.ontology def: "Measurement of the coagulation properties of blood within a living organism or as it leaves the living organism." [MS:MS] is_a: CMO:0000204 ! blood coagulation measurement created_by: mshimoyama creation_date: 2010-06-10T11:01:01Z [Term] id: CMO:0000206 name: in vitro coagulation measurement namespace: Clinical_Measurement.ontology def: "Measurement of coagulation and factors affecting coagulation in blood after removal from the living organism." [MS:MS] is_a: CMO:0000204 ! blood coagulation measurement created_by: mshimoyama creation_date: 2010-06-10T11:01:19Z [Term] id: CMO:0000207 name: bleeding time (BT) namespace: Clinical_Measurement.ontology def: "The time interval between the appearance of the first drop of blood and the removal of the last drop after puncture. In humans, the puncture is often made in the ear lobe or finger." [MediLexicon:MediLexicon www.medilexicon.com] is_a: CMO:0000205 ! in vivo coagulation measurement created_by: mshimoyama creation_date: 2010-06-10T11:04:59Z [Term] id: CMO:0000208 name: intramuscular fat morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the small deposits of fat located within and throughout skeletal muscle." [Wikipedia:http\://en.wikipedia.org/wiki/Intramuscular_fat] is_a: CMO:0000089 ! body fat morphological measurement is_a: CMO:0001147 ! skeletal muscle morphological measurement created_by: mshimoyama creation_date: 2010-06-24T01:25:42Z [Term] id: CMO:0000209 name: blood fibrinogen level namespace: Clinical_Measurement.ontology def: "Amount of fibrinogen, an acute-phase reactant protein contained in a specific amount of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "Factor I" RELATED [] is_a: CMO:0000028 ! blood protein measurement is_a: CMO:0000206 ! in vitro coagulation measurement created_by: mshimoyama creation_date: 2010-06-10T11:07:51Z [Term] id: CMO:0000210 name: activated partial thromboplastin time namespace: Clinical_Measurement.ontology def: "The time needed for plasma to form a fibrin clot after the addition of calcium and a phospholipid reagent. It is used to evaluate the intrinsic clotting system." [mediLexicon:MediLexicon www.medilexicon.com] is_a: CMO:0000206 ! in vitro coagulation measurement created_by: mshimoyama creation_date: 2010-06-10T11:20:31Z [Term] id: CMO:0000211 name: prothrombin time namespace: Clinical_Measurement.ontology def: "Measurement of the clotting ability of fibrinogen, prothrombin, proaccelerin, proconvertin and Stuart factor, usually given in seconds to formation of clot after the addition of a tissue factor or thromboplastin." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] is_a: CMO:0000206 ! in vitro coagulation measurement created_by: mshimoyama creation_date: 2010-06-10T11:21:04Z [Term] id: CMO:0000212 name: thrombin time namespace: Clinical_Measurement.ontology def: "The time needed for a fibrin clot to form after the addition of thrombin to citrated plasma." [MediLexicon:MediLexicon www.medilexicon.com] is_a: CMO:0000206 ! in vitro coagulation measurement created_by: mshimoyama creation_date: 2010-06-10T11:21:44Z [Term] id: CMO:0000213 name: intramuscular fat cell count to skeletal muscle volume ratio namespace: Clinical_Measurement.ontology def: "A calculated measurement of the number of intramuscular fat cells, that is, adipocytes which make up the small deposits of fat located within and throughout skeletal muscle, divided by the volume of skeletal muscle in the sample, presented as a ratio, fraction or quotient, thus normalizing it to the size of the muscle sample." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "intramuscular adipocyte count to skeletal muscle volume ratio" EXACT [] synonym: "number of adipocytes per cubic centimeter of muscle" RELATED [] synonym: "number of fat cells per cubic cm of muscle" RELATED [] is_a: CMO:0001145 ! calculated intramuscular fat morphological measurement created_by: mshimoyama creation_date: 2010-06-24T01:26:34Z [Term] id: CMO:0000214 name: intramuscular fat area as percentage of skeletal muscle area namespace: Clinical_Measurement.ontology def: "A calculated value in which the area of intramuscular fat divided by a specified area of skeletal muscle and presented as a percentage, thus normalizing it to the muscle area." [Dictionary:The Online American Heritage Dictionary of the English Language] synonym: "intramuscular adipose area as percentage of muscle area" RELATED [] synonym: "intramuscular adipose area as percentage of skeletal muscle area" RELATED [] is_a: CMO:0001163 ! calculated intramuscular fat area created_by: mshimoyama creation_date: 2010-06-24T01:27:14Z [Term] id: CMO:0000215 name: blood vessel dilation measurement namespace: Clinical_Measurement.ontology synonym: "vasodilation measurement" RELATED [] is_a: CMO:0000077 ! blood vessel measurement created_by: mshimoyama creation_date: 2010-06-10T02:02:16Z [Term] id: CMO:0000216 name: lumen diameter at maximum dilation expressed as percent of baseline namespace: Clinical_Measurement.ontology is_a: CMO:0000215 ! blood vessel dilation measurement created_by: mshimoyama creation_date: 2010-06-10T02:02:34Z [Term] id: CMO:0000217 name: plasma magnesium level namespace: Clinical_Measurement.ontology def: "The amount of magnesium ions in a specified volume of plasma." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000505 ! blood magnesium level created_by: mshimoyama creation_date: 2010-06-25T10:27:40Z [Term] id: CMO:0000218 name: blood vessel constriction measurement namespace: Clinical_Measurement.ontology synonym: "vasoconstriction measurement" RELATED [] is_a: CMO:0000077 ! blood vessel measurement created_by: mshimoyama creation_date: 2010-06-10T02:34:30Z [Term] id: CMO:0000219 name: lumen diameter at maximum constriction expressed as percent of baseline namespace: Clinical_Measurement.ontology is_a: CMO:0000218 ! blood vessel constriction measurement created_by: mshimoyama creation_date: 2010-06-10T02:35:20Z [Term] id: CMO:0000220 name: systemic vascular resistance measurement (SVR) namespace: Clinical_Measurement.ontology def: "Resistance to blood flow by blood vessels throughout the body, the degree to which the blood vessels impede the flow of blood, often calculated as SVR equal to the difference between mean arterial blood pressure(MAP) and central venous pressure(CVP) divided by cardiac output(CO)" [ms:] is_a: CMO:0000195 ! circulation measurement is_a: CMO:0000700 ! blood vessel resistance measurement created_by: mshimoyama creation_date: 2010-06-10T02:41:52Z [Term] id: CMO:0000221 name: end-diastolic volume namespace: Clinical_Measurement.ontology def: "volume of blood in ventricle immediately before a contraction" [ms:] is_a: CMO:0000195 ! circulation measurement created_by: mshimoyama creation_date: 2010-06-10T03:56:38Z [Term] id: CMO:0000222 name: tidal volume namespace: Clinical_Measurement.ontology def: "Volume of gas inhaled and exhaled during one respiratory cycle." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] is_a: CMO:0000114 ! ventilation measurement created_by: mshimoyama creation_date: 2010-06-10T03:57:56Z [Term] id: CMO:0000223 name: stroke volume namespace: Clinical_Measurement.ontology def: "volume of blood pumped from one ventricle of the heart with each beat, calculated by subtracting the volume of blood in the ventricle at the end of a beat (end-systolic volume) from the volume of blood just prior to the beat (end-diastolic volume)" [ms:] is_a: CMO:0000195 ! circulation measurement created_by: mshimoyama creation_date: 2010-06-11T01:32:10Z [Term] id: CMO:0000224 name: body region fat morphological measurement namespace: Clinical_Measurement.ontology def: "A measurement on the adipose tissue in a portion of the body." [MS:MS] is_a: CMO:0000089 ! body fat morphological measurement created_by: mshimoyama creation_date: 2010-06-16T10:54:24Z [Term] id: CMO:0000225 name: arterial blood gas measurement namespace: Clinical_Measurement.ontology def: "A measurement related to the oxygen, carbon dioxide and/or hydrogen ions in the blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000035 ! blood measurement created_by: mshimoyama creation_date: 2010-06-25T10:29:56Z [Term] id: CMO:0000226 name: body fat percentage, Lukaski equation namespace: Clinical_Measurement.ontology def: "Total body fat as a percentage of total body mass calculated as Total Body Water equal to 0.372 times height in centimeters squared divided by resistance plus 3.05 times sex (male-1, female-2) plus 0.142 times weight minus 0.69 times age" [ms:] is_a: CMO:0000302 ! body fat percentage created_by: mshimoyama creation_date: 2010-06-16T10:58:12Z [Term] id: CMO:0000227 name: cell measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000000 ! clinical measurement created_by: mshimoyama creation_date: 2010-06-17T10:30:36Z [Term] id: CMO:0000228 name: cardiomyocyte count namespace: Clinical_Measurement.ontology def: "Number of cells of muscular tissue in the heart in a specified sample size." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000001 ! cardiovascular measurement is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-06-17T10:30:50Z [Term] id: CMO:0000229 name: blood vessel endothelial cell number namespace: Clinical_Measurement.ontology is_a: CMO:0000077 ! blood vessel measurement created_by: mshimoyama creation_date: 2010-06-17T10:33:11Z [Term] id: CMO:0000230 name: heart electrical conduction measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000001 ! cardiovascular measurement is_a: CMO:0000670 ! heart measurement created_by: mshimoyama creation_date: 2010-06-17T10:36:15Z [Term] id: CMO:0000231 name: cell membrane potential namespace: Clinical_Measurement.ontology def: "Difference in electrical polarization or charge between two sides of a cell membrane or cell wall." [Mosby:Mosby's Medical Dictionary 8th Ed] synonym: "membrane electric potential gradient" RELATED [] synonym: "membrane voltage" RELATED [] synonym: "transmembrane potential" EXACT [] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-06-17T10:37:24Z [Term] id: CMO:0000232 name: RR interval namespace: Clinical_Measurement.ontology def: "Interval between an R wave and the next R wave of successive heart beats, inverse of the heart rate." [ms:, wikipedia:http\:en.wikipedia.org/wiki/ECG] synonym: "RR_Interval" RELATED [ECGOntology: "ECG_000000042"] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T10:39:30Z [Term] id: CMO:0000233 name: PR interval namespace: Clinical_Measurement.ontology def: "time between the beginning of the P wave to the beginning of the QRS complex, reflects the time the electrical impulse takes to travel from the sinus node through the AVE node and entering the ventricles, used as an estimate of AV node function." [wikipedia:http\://en.wikipedia.org/wiki/ECG] synonym: "PR_Interval" RELATED [ECGOntology: "ECG_0000003541"] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T10:40:52Z [Term] id: CMO:0000234 name: ST interval namespace: Clinical_Measurement.ontology def: "The time between the J point ( the point at which the QRS complex finishes and the ST segment begins) to the end of the T wave." [wikipedia:http\:en.wikipedia.org/wiki/ECG] synonym: "ST_Interval" RELATED [ECGOntology: "ECG_000000824"] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T10:43:21Z [Term] id: CMO:0000235 name: QT interval namespace: Clinical_Measurement.ontology def: "An interval measured from the onset of the QRS wave complex to the offset of the T wave." [ms:, wikipedia:http\:en.wikipedia.org/wiki/ECGdbxref>] synonym: "QT_Interval" RELATED [ECGOntology: "ECG_000000682"] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T10:45:44Z [Term] id: CMO:0000236 name: heart wall thickness namespace: Clinical_Measurement.ontology is_a: CMO:0000016 ! heart morphological measurement created_by: mshimoyama creation_date: 2010-06-17T10:53:08Z [Term] id: CMO:0000237 name: aorta wall thickness namespace: Clinical_Measurement.ontology def: "The depth of the wall of the aorta, the main trunk from which the arterial system proceeds." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000964 ! blood vessel wall thickness created_by: mshimoyama creation_date: 2010-06-17T10:54:17Z [Term] id: CMO:0000238 name: heart dorsal wall thickness namespace: Clinical_Measurement.ontology def: "The thickness or depth of the dorsal/posterior wall of the heart. The dorsal wall is the portion of the heart muscle which is closest to the spine and farthest from the chest wall of the organism." [PGA:Ultrasound_protocol, RGD:JRS] synonym: "heart posterior wall thickness" RELATED [] is_a: CMO:0000236 ! heart wall thickness created_by: mshimoyama creation_date: 2010-06-17T11:13:15Z [Term] id: CMO:0000239 name: heart left ventricle dorsal wall thickness namespace: Clinical_Measurement.ontology def: "The thickness or depth of the dorsal/posterior wall of the left ventricle of the heart. The dorsal wall is the portion of the muscle enclosing the ventricle which is closest to the spine and farthest from the chest wall of the organism." [PGA:Ultrasound_protocol, RGD:JRS] synonym: "heart left ventricle posterior wall thickness" RELATED [] is_a: CMO:0000238 ! heart dorsal wall thickness is_a: CMO:0000951 ! heart left ventricle morphological measurement created_by: mshimoyama creation_date: 2010-06-17T11:15:28Z [Term] id: CMO:0000240 name: heart right ventricle dorsal wall thickness namespace: Clinical_Measurement.ontology def: "The thickness or depth of the dorsal/posterior wall of the right ventricle of the heart. The dorsal wall is the portion of the muscle enclosing the ventricle which is closest to the spine and farthest from the chest wall of the organism." [PGA:Ultrasound_protocol, RGD:JRS] synonym: "heart right ventricle posterior wall thickness" RELATED [] is_a: CMO:0000238 ! heart dorsal wall thickness is_a: CMO:0000952 ! heart right ventricle morphological measurement created_by: mshimoyama creation_date: 2010-06-17T11:15:42Z [Term] id: CMO:0000241 name: forced expiratory volume to forced vital capacity ratio namespace: Clinical_Measurement.ontology def: "The comparison of forced expiratory volume to forced vital capacity expressed as ratio or percentage." [wikipedia:en.wikipedia.org] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2010-12-16T01:02:33Z [Term] id: CMO:0000242 name: waist circumference namespace: Clinical_Measurement.ontology def: "Distance completely around the body in the area between the thorax and hips. In humans, this is commonly at the umbilicus." [MS:MS] synonym: "waist girth" RELATED [] is_a: CMO:0000296 ! abdominal morphological measurement created_by: mshimoyama creation_date: 2010-06-17T11:28:45Z [Term] id: CMO:0000243 name: total abdominal fat area namespace: Clinical_Measurement.ontology def: "Total area of adipose tissue in the abdominal area including subcutaneous and visceral adipose tissue." [MS:MS] is_a: CMO:0000311 ! abdominal fat measurement created_by: mshimoyama creation_date: 2010-06-17T11:30:59Z [Term] id: CMO:0000244 name: abdominal visceral fat area namespace: Clinical_Measurement.ontology def: "Area of adipose tissue within the muscle wall surrounding the abdominal cavity." [ms:ms] synonym: "intra-abdominal fat area" RELATED [] is_a: CMO:0000311 ! abdominal fat measurement created_by: mshimoyama creation_date: 2010-06-17T11:32:07Z [Term] id: CMO:0000245 name: abdominal subcutaneous fat area namespace: Clinical_Measurement.ontology def: "Area of adipose tissue found beneath the skin in the abdominal region. Sometimes calculated as total fat area minus abdominal visceral fat area." [ms:] is_a: CMO:0000311 ! abdominal fat measurement created_by: mshimoyama creation_date: 2010-06-17T11:34:35Z [Term] id: CMO:0000246 name: skin fold thickness namespace: Clinical_Measurement.ontology def: "This measurement is made on the layer of skin and subcutaneous fat raised by pinching the skin and letting the underlying muscle fall back to the bone. It is often used to estimate percentage of body fat." [Dorland:Dorland's Illustrated Medical Dictionary 31st Edition] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-06-17T12:15:08Z [Term] id: CMO:0000247 name: skin fold thickness, bicep namespace: Clinical_Measurement.ontology def: "Measurement made on the layer of skin and subcutaneous fat raised by pinching the skin and letting the underlying muscle fall back to the bone in the region of the biceps muscle, commonly the upper arm in humans." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000246 ! skin fold thickness created_by: mshimoyama creation_date: 2010-06-17T12:16:12Z [Term] id: CMO:0000248 name: skin fold thickness, tricep namespace: Clinical_Measurement.ontology def: "This measurement of a fold of skin and subcutaneous fat taken at a point running parallel to the length of the upper limb over the triceps muscle midway between the acromion and olecranon" [Dorland:Dorland's Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000246 ! skin fold thickness created_by: mshimoyama creation_date: 2010-06-17T12:16:27Z [Term] id: CMO:0000249 name: skin fold thickness, subscapular namespace: Clinical_Measurement.ontology def: "Measurement made on the layer of skin and subcutaneous fat raised by pinching the skin and letting the underlying muscle fall back to the bone in the region just below the scapula." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000246 ! skin fold thickness created_by: mshimoyama creation_date: 2010-06-17T12:16:43Z [Term] id: CMO:0000250 name: skin fold thickness, suprailiac namespace: Clinical_Measurement.ontology def: "Measurement is made on the layer of skin and subcutaneous fat raised by pinching the skin and letting the underlying muscle fall back to the bone in the area at the midaxillary line directly above the iliac crest." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000246 ! skin fold thickness created_by: mshimoyama creation_date: 2010-06-17T12:17:02Z [Term] id: CMO:0000251 name: forced vital capacity (FVC) namespace: Clinical_Measurement.ontology def: "The volume of air that can be forcibly expelled from a maximally inflated lung." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] synonym: "forced expired vital capacity" RELATED [] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2010-06-17T12:18:18Z [Term] id: CMO:0000252 name: maximum inspiratory flow (PIF) namespace: Clinical_Measurement.ontology is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2010-06-17T12:18:42Z [Term] id: CMO:0000253 name: maximum mid-expiratory flow (MMEF) namespace: Clinical_Measurement.ontology def: "Maximal rate of air flow through the pulmonary tree during forced expiration." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] synonym: "peak expiratory flow" RELATED [] synonym: "PEF" RELATED [] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2010-06-17T12:19:05Z [Term] id: CMO:0000254 name: forced expiratory volume namespace: Clinical_Measurement.ontology def: "Fraction of forced vital capacity that is exhaled in a specific number of seconds." [Dorland:Dorland's Medical Dictionary for Health Consumers 2007] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2010-06-17T12:19:28Z [Term] id: CMO:0000255 name: maximal volume ventilation (MVV) namespace: Clinical_Measurement.ontology def: "Maximum volume of air that an organism can breathe in and out during a specified period of time, often 1 minute." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] synonym: "maximum breathing capacity" RELATED [] is_a: CMO:0000114 ! ventilation measurement created_by: mshimoyama creation_date: 2010-12-17T09:50:05Z [Term] id: CMO:0000256 name: urine measurement namespace: Clinical_Measurement.ontology def: "Any measurement of urine or its components." [MS:MS] is_a: CMO:0000080 ! renal/urinary measurement created_by: mshimoyama creation_date: 2010-06-17T12:26:05Z [Term] id: CMO:0000257 name: urine specific gravity namespace: Clinical_Measurement.ontology def: "Measure of the concentration of particles in the urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-06-17T12:27:01Z [Term] id: CMO:0000258 name: urine pH namespace: Clinical_Measurement.ontology def: "pH is the degree of acidity or alkalinity determined by the ions present." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-06-17T12:30:48Z [Term] id: CMO:0000259 name: urine volume namespace: Clinical_Measurement.ontology def: "The amount of urine voided." [MS:MS] is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-06-17T12:31:57Z [Term] id: CMO:0000260 name: timed urine volume namespace: Clinical_Measurement.ontology def: "The amount of urine voided over a specified period of time." [MS:MS] is_a: CMO:0000259 ! urine volume created_by: mshimoyama creation_date: 2010-06-17T12:32:06Z [Term] id: CMO:0000261 name: urination frequency namespace: Clinical_Measurement.ontology def: "The number of times an organism voids urine over a specified period of time." [MS:MS] is_a: CMO:0000080 ! renal/urinary measurement created_by: mshimoyama creation_date: 2010-06-17T12:33:35Z [Term] id: CMO:0000262 name: urine catecholamine level namespace: Clinical_Measurement.ontology synonym: "free catecholamine fractionation measurement" RELATED [] is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-06-17T12:34:59Z [Term] id: CMO:0000263 name: P wave amplitude namespace: Clinical_Measurement.ontology def: "The magnitude of the P wave, the initial deflection of the cardiac cycle representing excitation of the atria as presented in an electrocardiogram." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:38:44Z [Term] id: CMO:0000264 name: P wave duration namespace: Clinical_Measurement.ontology def: "The time from start to finish of the P wave , in the electrocardiograph illustrating the initial deflection of the cardiac cycle, representing the excitation of the atria." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:39:11Z [Term] id: CMO:0000265 name: Q wave depth namespace: Clinical_Measurement.ontology def: "The distance to the lowest part of the Q wave which shows the initial downward deflection related to the initial phase of depolarization of the ventricular myocardium and the depolarization of the interventricular septum as measured by electrocardiograph." [Dorland:Dorland's Illustrated Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:39:35Z [Term] id: CMO:0000266 name: Q wave duration namespace: Clinical_Measurement.ontology def: "The time from start to finish of the Q wave which illustrates the initial downward deflection related to the initial phase of depolarization of the ventricular myocardium and the depolarization of the interventricular septum as measured by an electrocardiograph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:39:55Z [Term] id: CMO:0000267 name: QRS duration namespace: Clinical_Measurement.ontology def: "The time from start to finish of the QRS interval as calculated from a set of measurements taken from the beginning of the QRS complex to the end of the QRS complex representing the time it takes for ventricles to depolarize." [Dorland:Dorland's Illustrated Medical Dictionary] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:40:13Z [Term] id: CMO:0000268 name: QRS amplitude namespace: Clinical_Measurement.ontology def: "The magnitude of the portion of the electrocardiograph comprising the Q, R, and S waves which together represent ventricular depolarization." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:40:30Z [Term] id: CMO:0000269 name: QTC interval namespace: Clinical_Measurement.ontology def: "QT interval corrected for heart rate calculated by the QT interval divided by the square root of the interval from one QRS complex to the onset of the next QRS complex measured in seconds." [wikipedia:en.wikipedia.org] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:40:52Z [Term] id: CMO:0000270 name: R wave amplitude namespace: Clinical_Measurement.ontology def: "The magnitude of the R wave, which is the initial upward deflection of the QRS complex following the Q wave representing early depolarization of the ventricles as illustrated by an electrocardiograph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:41:09Z [Term] id: CMO:0000271 name: R wave duration namespace: Clinical_Measurement.ontology def: "The time from start to finish of the R wave, the initial upward deflection of the QRS complex following the Q wave which represents early depolarization of the ventricles as illustrated in and electrocardiograph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:41:26Z [Term] id: CMO:0000272 name: S wave amplitude namespace: Clinical_Measurement.ontology def: "The magnitude of the S wave, the downward deflection of the QRS complex following the R wave representing late depolarization of the ventricles as illustrated in an electrocardiograph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:41:54Z [Term] id: CMO:0000273 name: S wave duration namespace: Clinical_Measurement.ontology def: "The time from start to finish of the S wave which is the downward deflection of the QRS complex following the R wave representing late depolarization as illustrated by an electrocardiograph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:42:07Z [Term] id: CMO:0000274 name: ST amplitude namespace: Clinical_Measurement.ontology is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:42:27Z [Term] id: CMO:0000275 name: ST slope namespace: Clinical_Measurement.ontology is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:42:46Z [Term] id: CMO:0000276 name: ST wave displacement namespace: Clinical_Measurement.ontology is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:43:04Z [Term] id: CMO:0000277 name: T wave amplitude namespace: Clinical_Measurement.ontology def: "The magnitude of the T wave, the deflection following the QRS complex representing repolarization of the ventricles as illustrated by and electrocardiograph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed., XX:] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T12:43:21Z [Term] id: CMO:0000278 name: PP interval namespace: Clinical_Measurement.ontology def: "An interval measured from the onset of the P wave in one PQRST wave complex to the onset of the P wave in the following PQRST wave complex" [wikipedia:http\:en.wikipedia.org/wiki/ECG] synonym: "PP_Interval" RELATED [ECGOntology: "ECG_000000011"] is_a: CMO:0000230 ! heart electrical conduction measurement created_by: mshimoyama creation_date: 2010-06-17T03:09:47Z [Term] id: CMO:0000279 name: urine bilirubin level namespace: Clinical_Measurement.ontology is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-06-17T03:36:46Z [Term] id: CMO:0000280 name: urine amylase level namespace: Clinical_Measurement.ontology def: "The amount of amylase, an enzyme that catalyzes the hydrolysis of starch and glycogen, in a specified volume of urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000592 ! urine enzyme level created_by: mshimoyama creation_date: 2010-06-17T03:41:36Z [Term] id: CMO:0000281 name: urine calcium level namespace: Clinical_Measurement.ontology def: "Usually determined from a 24 hour volume of urine, expressed in mg of urine per kg of calcium per day or mg per 24 hours" [Medline Plus:] is_a: CMO:0000593 ! urine electrolyte level created_by: mshimoyama creation_date: 2010-06-17T03:42:07Z [Term] id: CMO:0000282 name: urine cortisol level namespace: Clinical_Measurement.ontology def: "The amount of cortisol, a glucocorticoid hormone produced by the adrenal cortex, in a specified volume of urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] synonym: "free cortisol" RELATED [] is_a: CMO:0000594 ! urine steroid level created_by: mshimoyama creation_date: 2010-06-17T03:50:25Z [Term] id: CMO:0000283 name: partial pressure of blood carbon dioxide (Pco2) namespace: Clinical_Measurement.ontology def: "The fraction of pressure exerted by the total number of gas molecules in a specified volume of blood which can be attributed to carbon dioxide molecules." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "PaCO2" RELATED [] is_a: CMO:0000225 ! arterial blood gas measurement created_by: mshimoyama creation_date: 2010-12-13T02:40:09Z [Term] id: CMO:0000284 name: serum carboxyhemoglobin level namespace: Clinical_Measurement.ontology def: "A measure of the amount of carboxyhemoglobin formed by the combination of carbon monoxide and hemoglobin in a specified volume of serum." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] synonym: "blood carbon monoxide level" RELATED [] is_a: CMO:0000584 ! blood carboxyhemoglobin level created_by: mshimoyama creation_date: 2010-06-25T10:33:13Z [Term] id: CMO:0000285 name: activated clotting time (ACT) namespace: Clinical_Measurement.ontology def: "Time for whole blood to clot after the addition of particulate activators." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests] is_a: CMO:0000206 ! in vitro coagulation measurement created_by: mshimoyama creation_date: 2010-06-25T11:36:30Z [Term] id: CMO:0000286 name: blood peptide hormone level namespace: Clinical_Measurement.ontology def: "Measurement of the amount in blood of a molecular chain compound composed of two or more amino acids joined by peptide bonds that is produced in one part or organ of the body and initiates or regulates the activity of an organ or a group of cells in another part of the body." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000028 ! blood protein measurement is_a: CMO:0001003 ! blood hormone level created_by: mshimoyama creation_date: 2010-06-25T12:08:08Z [Term] id: CMO:0000287 name: serum adrenocorticotropic hormone level (ACTH) namespace: Clinical_Measurement.ontology synonym: "ACTH" RELATED [] synonym: "corticotropin" RELATED [] is_a: CMO:0000555 ! blood adrenocorticotropic hormone level (ACTH) created_by: mshimoyama creation_date: 2010-06-25T12:08:31Z [Term] id: CMO:0000288 name: percent change in ventilation namespace: Clinical_Measurement.ontology def: "Change in the amount of air breathed in and out between two points in time or two conditions expressed as a percentage." [MS:] is_a: CMO:0000114 ! ventilation measurement created_by: mshimoyama creation_date: 2011-09-21T11:17:24Z [Term] id: CMO:0000289 name: respiration rate namespace: Clinical_Measurement.ontology def: "The number of breaths taken by an organism per unit of time." [American Heritage:American Heritage Medical Dictionary 2007] synonym: "breathing frequency" RELATED [] synonym: "pulmonary ventilation rate" RELATED [] synonym: "respiratory rate" RELATED [] is_a: CMO:0000114 ! ventilation measurement created_by: mshimoyama creation_date: 2011-09-21T11:30:32Z [Term] id: CMO:0000290 name: mean corpuscular hemoglobin level (MCH) namespace: Clinical_Measurement.ontology def: "The average weight of hemoglobin within a red blood cell count. It is derived by dividing the total hemoglobin concentration by the number of red blood cells." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000036 ! blood cell measurement created_by: mshimoyama creation_date: 2010-06-25T01:31:46Z [Term] id: CMO:0000291 name: mean corpuscular hemoglobin concentration (MCHC) namespace: Clinical_Measurement.ontology def: "The amount of hemoglobin in a given volume of packed red blood cells and is often calculated by dividing the hemoglobin concentration by the hematocrit." [wikipedia:en.wikipedia.org] is_a: CMO:0000036 ! blood cell measurement created_by: mshimoyama creation_date: 2010-06-25T01:32:50Z [Term] id: CMO:0000292 name: pulse pressure namespace: Clinical_Measurement.ontology def: "The difference between systolic and diastolic blood pressures." [Berne and Levy:Berne and Levy Physiology] is_a: CMO:0000008 ! calculated blood pressure created_by: mshimoyama creation_date: 2010-06-25T01:54:10Z [Term] id: CMO:0000293 name: elbow breadth namespace: Clinical_Measurement.ontology def: "In humans this measurement is commonly performed with the individual's arm extended perpendicular to the body and bent with the fingers pointing up so the angle at the elbow is 90 degrees. The greatest distance across the elbow joint is used for the measurement." [Frisancho and Flegel:Frisancho and Flegel\, 1983] is_a: CMO:0000387 ! forelimb morphological measurement created_by: mshimoyama creation_date: 2010-08-04T09:43:03Z [Term] id: CMO:0000294 name: pulse namespace: Clinical_Measurement.ontology def: "The count of the rhythmic contractions and expansions of an artery due to the surge of blood from the beat of the heart." [MedicineNet:MedicineNet.com] is_a: CMO:0000001 ! cardiovascular measurement created_by: mshimoyama creation_date: 2010-08-04T10:37:40Z [Term] id: CMO:0000295 name: upright sagittal abdominal diameter namespace: Clinical_Measurement.ontology def: "The measured distance from an individual's back to upper abdomen from midway between the top of the pelvis and the bottom of the ribs, commonly measured while the individual is upright." [Wikipedia:http\://en.wikipedia.org/wiki/Sagittal_Abdominal_Diameter] is_a: CMO:0000296 ! abdominal morphological measurement created_by: mshimoyama creation_date: 2010-08-04T01:46:40Z [Term] id: CMO:0000296 name: abdominal morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-08-04T01:50:13Z [Term] id: CMO:0000297 name: supine abdominal height namespace: Clinical_Measurement.ontology def: "Measured distance between back and upper abdomen of an individual, midway between the top of the pelvis and bottom of the ribs while individual is in the supine position." [Wikipedia:http\://en.wikipedia.org] is_a: CMO:0000296 ! abdominal morphological measurement created_by: mshimoyama creation_date: 2010-08-04T01:51:04Z [Term] id: CMO:0000298 name: absolute change in partial pressure of blood carbon dioxide namespace: Clinical_Measurement.ontology def: "The difference between partial pressure of blood carbon dioxide between two points in time or two conditions." [MS:] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000225 ! arterial blood gas measurement created_by: mshimoyama creation_date: 2011-09-21T11:44:45Z [Term] id: CMO:0000299 name: absolute change in partial pressure of blood oxygen namespace: Clinical_Measurement.ontology def: "Difference in partial pressure of blood oxygen between two points in time or two conditions." [MS:] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000225 ! arterial blood gas measurement created_by: mshimoyama creation_date: 2011-09-21T11:47:26Z [Term] id: CMO:0000300 name: absolute change in blood pH namespace: Clinical_Measurement.ontology def: "The difference in blood pH between two different points in time or between two different conditions." [MS:] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000379 ! blood pH created_by: mshimoyama creation_date: 2011-09-21T01:19:42Z [Term] id: CMO:0000301 name: body density namespace: Clinical_Measurement.ontology def: "The measure of mass per unit of volume often used to determine body fat composition. Techniques often used include comparison of body weight inside and outside of water or a ratio of body volume and weight. Common formulas include body density equal to body weight divided by body volume minus residual lung volume or body density equal to body weight divided by the dividend of body weight minus water weight divided by the density of water minus residual lung volume." [Encyclopedia.com:www.encyclopedia.com] is_a: CMO:0000089 ! body fat morphological measurement created_by: mshimoyama creation_date: 2010-08-04T02:17:57Z [Term] id: CMO:0000302 name: body fat percentage namespace: Clinical_Measurement.ontology is_a: CMO:0000312 ! calculated body fat morphological measurement created_by: mshimoyama creation_date: 2010-08-05T08:53:40Z [Term] id: CMO:0000303 name: body fat percentage, Siri equation namespace: Clinical_Measurement.ontology def: "Total body fat expressed as a percentage of body mass using the formula percent body fat equals 495 divided by body density minus 450. Often used for Caucasian men." [topendsports:www.topendsports.com] is_a: CMO:0000302 ! body fat percentage created_by: mshimoyama creation_date: 2010-08-05T08:54:02Z [Term] id: CMO:0000304 name: fat mass index (FMI) namespace: Clinical_Measurement.ontology def: "The total amount of body fat calculated as fat mass index equal to fat weight divided by height squared." [Schutz\, Kyle\, Pichard:Schutz et al\,2002] is_a: CMO:0000312 ! calculated body fat morphological measurement created_by: mshimoyama creation_date: 2010-08-05T09:10:41Z [Term] id: CMO:0000305 name: total body fat weight namespace: Clinical_Measurement.ontology is_a: CMO:0000089 ! body fat morphological measurement created_by: mshimoyama creation_date: 2010-08-05T09:19:24Z [Term] id: CMO:0000306 name: fat free mass index (FFMI) namespace: Clinical_Measurement.ontology def: "Portion of the body not comprised of lipids often calculated as fat free mass equal to fat free mass divided by height squared." [Schutz\, Kyle and Pichard:Schuze et al\, 2002] is_a: CMO:0000312 ! calculated body fat morphological measurement created_by: mshimoyama creation_date: 2010-08-05T09:21:40Z [Term] id: CMO:0000307 name: residual lung volume namespace: Clinical_Measurement.ontology def: "The amount of gas remaining in the lung at the end of a maximal exhalation." [Dorland:Dorland's Medical Dictionary for Health Consumers 2007] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2010-08-05T09:28:36Z [Term] id: CMO:0000308 name: body fat percentage, Lohman equation namespace: Clinical_Measurement.ontology def: "Fat as a percentage of body weight using the formula percent body fat equal to 503.3 divided by body density minus 459.2." [Lohman:Lohman et al 1986] is_a: CMO:0000302 ! body fat percentage created_by: mshimoyama creation_date: 2010-08-05T09:31:21Z [Term] id: CMO:0000309 name: body fat percentage, Schutte equation namespace: Clinical_Measurement.ontology def: "Total body fat expressed as percentage of body weight using the formula percent fat equal to 437.4 divided by body density minus 392.8. Often used for African and African-American men." [Schutte:Schutte et al 1984] is_a: CMO:0000302 ! body fat percentage created_by: mshimoyama creation_date: 2010-08-05T09:33:56Z [Term] id: CMO:0000310 name: body fat percentage, Ortiz equation namespace: Clinical_Measurement.ontology def: "Total body fat expressed as a percentage of body mass using the equation percent fat equal to 483.2 divided by body density minus 436.9. Often used for African or African-American women." [Ortiz:Ortiz et al 1992] is_a: CMO:0000302 ! body fat percentage created_by: mshimoyama creation_date: 2010-08-05T09:35:49Z [Term] id: CMO:0000311 name: abdominal fat measurement namespace: Clinical_Measurement.ontology def: "A measurement of the adipose tissue in the body region between the thorax and pelvis." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000224 ! body region fat morphological measurement created_by: mshimoyama creation_date: 2010-08-05T09:40:43Z [Term] id: CMO:0000312 name: calculated body fat morphological measurement namespace: Clinical_Measurement.ontology def: "A measurement of body adipose tissue taken in comparison to other measurements, typically whole body weight." [MS:MS] is_a: CMO:0000089 ! body fat morphological measurement created_by: mshimoyama creation_date: 2010-08-05T09:43:07Z [Term] id: CMO:0000313 name: abdominal fat weight namespace: Clinical_Measurement.ontology def: "The weight of any or all of the adipose tissue types in the abdominal region." [MS:MS] is_a: CMO:0000311 ! abdominal fat measurement created_by: mshimoyama creation_date: 2010-08-05T10:18:09Z [Term] id: CMO:0000314 name: central abdominal fat weight namespace: Clinical_Measurement.ontology is_a: CMO:0000313 ! abdominal fat weight created_by: mshimoyama creation_date: 2010-08-05T10:18:39Z [Term] id: CMO:0000315 name: arm span namespace: Clinical_Measurement.ontology def: "Distance between the tips of the longest fingers with the arms maximally outstretched laterally." [Anton and Snodgrass:Anton\, Snodgrass\, Bones and Behavior Working Group 2009] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-08-05T10:20:14Z [Term] id: CMO:0000316 name: chest circumference namespace: Clinical_Measurement.ontology def: "Distance around the upper trunk of an organism, typically taken at the maximum breadth." [ms:] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-08-05T10:26:16Z [Term] id: CMO:0000317 name: proximal forelimb circumference namespace: Clinical_Measurement.ontology def: "The distance around one of the paired front or upper limbs of a quadruped in the region closest to the body." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000387 ! forelimb morphological measurement created_by: mshimoyama creation_date: 2010-08-05T10:33:30Z [Term] id: CMO:0000318 name: hepatocyte count namespace: Clinical_Measurement.ontology def: "The number of hepatic cells, polyhedral epithelial cells that constitute the substance of a liver acinus, in a specified sample size." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:17:57Z [Term] id: CMO:0000319 name: pancreatic beta cell count namespace: Clinical_Measurement.ontology def: "The number of islet cells which secrete insulin and make up the islets of Langerhans in the pancreas in a specified sample size." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:18:12Z [Term] id: CMO:0000320 name: retina cell count namespace: Clinical_Measurement.ontology def: "Number of cells in a specified sample of the innermost coat lining of the interior of the eyeball." [Wikipedia:en.wikipedia.org] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:19:08Z [Term] id: CMO:0000321 name: bronchial epithelial cell count namespace: Clinical_Measurement.ontology def: "Number of cells in a specified sample of the internal lining of a bronchus." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:20:42Z [Term] id: CMO:0000322 name: osteoblast cell count namespace: Clinical_Measurement.ontology def: "The number of osteoblasts, cells which arise from a fibroblast and are associated with the production of bone, in a specified sample size." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:21:21Z [Term] id: CMO:0000323 name: osteoclast cell count namespace: Clinical_Measurement.ontology def: "The number of osteoclasts, multinuclear cells associated with the absorption and removal of bone, in a specified sample size." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:21:32Z [Term] id: CMO:0000324 name: Purkinje cell count namespace: Clinical_Measurement.ontology def: "The number of Purkinje cells, neurons in the cerebellar cortex, in a specified tissue sample." [Dorland:Dorland's Medical Dictionary] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:21:55Z [Term] id: CMO:0000325 name: Schwann cell count namespace: Clinical_Measurement.ontology def: "The number of Schwann cells, large nucleated cells whose membranes spirally wrap axons of myelinated peripheral neurons, in a specified sample volume." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:22:08Z [Term] id: CMO:0000326 name: oocyte count namespace: Clinical_Measurement.ontology def: "Number of oocytes, immature female reproductive cells in a specified sample size." [Dorland:Dorland's Illustrated Medical Dictionary] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:22:29Z [Term] id: CMO:0000327 name: sperm count namespace: Clinical_Measurement.ontology alt_id: CMO:0000639 def: "The number of male germ cells, sperm, in a specified volume of semen." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] is_a: CMO:0000227 ! cell measurement is_a: CMO:0000640 ! sperm measurement created_by: mshimoyama creation_date: 2010-09-01T08:22:40Z [Term] id: CMO:0000328 name: neuron count namespace: Clinical_Measurement.ontology def: "The number of neurons, conducting cells of the nervous system, in a specified sample size." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-09-01T08:25:33Z [Term] id: CMO:0000329 name: intestine morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the intestine, the portion of the alimentary canal extending from the pyloric opening of the stomach to the anus." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000068 ! organ morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:27:32Z [Term] id: CMO:0000330 name: intestine length namespace: Clinical_Measurement.ontology def: "Distance from end to end of the portion of the alimentary canal extending from the pyloric valve of the stomach to the anus." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000329 ! intestine morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:27:44Z [Term] id: CMO:0000331 name: intestine weight namespace: Clinical_Measurement.ontology is_a: CMO:0000329 ! intestine morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:27:54Z [Term] id: CMO:0000332 name: pancreas morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the pancreas, the compound endocrine/exocrine gland located behind the stomach in vertebrates which secretes hormones (insulin, glucagon, and somatostatin) into the bloodstream and digestive enzymes and ions such as sodium bicarbonate into the small intestine." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000068 ! organ morphological measurement is_a: CMO:0001049 ! pancreas measurement created_by: mshimoyama creation_date: 2010-09-01T08:28:25Z [Term] id: CMO:0000333 name: pancreas weight namespace: Clinical_Measurement.ontology def: "The weight of the pancreas, the compound endocrine/exocrine gland located behind the stomach in vertebrates which secretes hormones (insulin, glucagon, and somatostatin) into the bloodstream and digestive enzymes and ions such as sodium bicarbonate into the small intestine." [Dictionary:The American Heritage Science Dictionary] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000332 ! pancreas morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:28:38Z [Term] id: CMO:0000334 name: heart atrium morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000016 ! heart morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:30:15Z [Term] id: CMO:0000335 name: left atrium weight namespace: Clinical_Measurement.ontology def: "The weight of the left atrium of the heart, the upper chamber on the left which empties into the lower chamber. Weight is the heaviness or degree to which a body is drawn toward the earth by gravity." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000334 ! heart atrium morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:30:28Z [Term] id: CMO:0000336 name: right atrium weight namespace: Clinical_Measurement.ontology def: "The weight of the right atrium, the upper right chamber of the heart which empties into the lower chamber. Weight is the heaviness or degree to which a body is drawn to the earth by gravity." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000334 ! heart atrium morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:30:45Z [Term] id: CMO:0000337 name: left atrium volume namespace: Clinical_Measurement.ontology def: "A measure of the capacity of the left heart atrium, the upper left chamber which empties into the lower heart chamber." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000334 ! heart atrium morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:30:56Z [Term] id: CMO:0000338 name: right atrium volume namespace: Clinical_Measurement.ontology def: "A measure of the capacity of the right atrium of the heart, the upper right chamber which empties into the lower chamber." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000334 ! heart atrium morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:31:06Z [Term] id: CMO:0000339 name: heart ventricle morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000016 ! heart morphological measurement created_by: mshimoyama creation_date: 2010-09-01T08:31:46Z [Term] id: CMO:0000340 name: both kidneys weight to body weight ratio namespace: Clinical_Measurement.ontology def: "The total weight of both kidneys divided by the total body weight." [MS:] is_a: CMO:0000160 ! calculated kidney weight created_by: mshimoyama creation_date: 2011-09-21T01:41:55Z [Term] id: CMO:0000341 name: tumor measurement namespace: Clinical_Measurement.ontology def: "Measurement of an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000000 ! clinical measurement created_by: mshimoyama creation_date: 2010-11-01T10:33:11Z [Term] id: CMO:0000342 name: plasma insulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000349 ! blood insulin level created_by: mshimoyama creation_date: 2011-09-21T04:38:00Z [Term] id: CMO:0000343 name: mammary tumor number namespace: Clinical_Measurement.ontology def: "The number of tumors found within the mammary gland." [MS:MS] is_a: CMO:0000347 ! mammary tumor measurement created_by: mshimoyama creation_date: 2010-11-01T10:35:44Z [Term] id: CMO:0000344 name: mammary tumor growth rate namespace: Clinical_Measurement.ontology def: "The change is size between two points in time for a tumor found within the mammary gland." [MS:MS] is_a: CMO:0000347 ! mammary tumor measurement created_by: mshimoyama creation_date: 2010-11-01T10:37:00Z [Term] id: CMO:0000345 name: time to mammary tumor formation, post insult namespace: Clinical_Measurement.ontology def: "The amount of time to the first discernible appearance of tumor in the mammary gland following the administration of a tumor causing agent." [MS:MS] synonym: "mammary tumor latency measurement" RELATED [] synonym: "mammary tumor latency period" RELATED [] synonym: "mammary tumor latent period" RELATED [] is_a: CMO:0000347 ! mammary tumor measurement created_by: mshimoyama creation_date: 2010-11-01T10:37:56Z [Term] id: CMO:0000346 name: mammary tumor diameter namespace: Clinical_Measurement.ontology def: "The length of a transverse line moving from side to side through the center of a tumor located in the mammary gland." [Dorland:Dorland's Illustrated Medical Dictionary] is_a: CMO:0000347 ! mammary tumor measurement created_by: mshimoyama creation_date: 2010-11-01T10:44:32Z [Term] id: CMO:0000347 name: mammary tumor measurement namespace: Clinical_Measurement.ontology def: "Measurement of an abnormal growth of tissue in the mammary gland resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000341 ! tumor measurement is_a: CMO:0000866 ! mammary gland tumorous lesion measurement created_by: mshimoyama creation_date: 2010-11-02T09:14:41Z [Term] id: CMO:0000348 name: mammary tumor weight namespace: Clinical_Measurement.ontology def: "The weight of a tumor found within a mammary gland." [MS:MS] is_a: CMO:0000347 ! mammary tumor measurement created_by: mshimoyama creation_date: 2010-11-02T02:31:08Z [Term] id: CMO:0000349 name: blood insulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000286 ! blood peptide hormone level created_by: mshimoyama creation_date: 2010-11-08T01:45:04Z [Term] id: CMO:0000350 name: blood glucose level, area under curve (AUC) namespace: Clinical_Measurement.ontology is_a: CMO:0000352 ! calculated blood glucose level created_by: mshimoyama creation_date: 2010-11-08T03:31:06Z [Term] id: CMO:0000351 name: blood insulin level, area under curve (AUC) namespace: Clinical_Measurement.ontology is_a: CMO:0000353 ! calculated blood insulin level created_by: mshimoyama creation_date: 2010-11-08T03:54:32Z [Term] id: CMO:0000352 name: calculated blood glucose level namespace: Clinical_Measurement.ontology is_a: CMO:0000046 ! blood glucose level created_by: mshimoyama creation_date: 2010-11-09T09:35:22Z [Term] id: CMO:0000353 name: calculated blood insulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000349 ! blood insulin level created_by: mshimoyama creation_date: 2010-11-09T11:38:51Z [Term] id: CMO:0000354 name: change in blood insulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000353 ! calculated blood insulin level created_by: mshimoyama creation_date: 2010-11-09T11:39:20Z [Term] id: CMO:0000355 name: mesenteric fat pad weight namespace: Clinical_Measurement.ontology def: "Weight of the encapsulated adipose tissue attached t the membranous fold or mesentery of the abdomen." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000313 ! abdominal fat weight created_by: mshimoyama creation_date: 2010-11-10T10:57:59Z [Term] id: CMO:0000356 name: retroperitoneal fat pad weight namespace: Clinical_Measurement.ontology def: "Weight of the encapsulated adipose tissue found posterior to the peritoneum." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000313 ! abdominal fat weight created_by: mshimoyama creation_date: 2010-11-10T10:58:18Z [Term] id: CMO:0000357 name: epididymal fat pad weight namespace: Clinical_Measurement.ontology def: "Weight of the encapsulated adipose tissue surrounding the epididymis, the structure along the posterior body of the testis." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000657 ! epididymal fat pad measurement created_by: mshimoyama creation_date: 2010-11-10T11:00:55Z [Term] id: CMO:0000358 name: serum insulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000349 ! blood insulin level created_by: mshimoyama creation_date: 2010-11-11T11:39:21Z [Term] id: CMO:0000359 name: converted serum insulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000358 ! serum insulin level created_by: mshimoyama creation_date: 2010-11-11T11:40:56Z [Term] id: CMO:0000360 name: serum triglyceride level namespace: Clinical_Measurement.ontology is_a: CMO:0000118 ! blood triglyceride level created_by: mshimoyama creation_date: 2010-11-12T09:44:31Z [Term] id: CMO:0000361 name: serum high density lipoprotein cholesterol level (HDL) namespace: Clinical_Measurement.ontology is_a: CMO:0000052 ! blood high density lipoprotein cholesterol level (HDL) created_by: mshimoyama creation_date: 2010-11-12T09:46:16Z [Term] id: CMO:0000362 name: serum low density lipoprotein cholesterol level (LDL) namespace: Clinical_Measurement.ontology is_a: CMO:0000053 ! blood low density lipoprotein cholesterol level (LDL) created_by: mshimoyama creation_date: 2010-11-12T09:46:39Z [Term] id: CMO:0000363 name: serum total cholesterol level namespace: Clinical_Measurement.ontology is_a: CMO:0000051 ! blood total cholesterol level created_by: mshimoyama creation_date: 2010-11-12T09:46:59Z [Term] id: CMO:0000364 name: complete blood cell count (CBC) namespace: Clinical_Measurement.ontology def: "The calculation of the cellular elements of the blood, usually including cell counts for white and red blood cells and platelets." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000036 ! blood cell measurement created_by: mshimoyama creation_date: 2010-12-13T09:32:14Z [Term] id: CMO:0000365 name: total white blood cell count namespace: Clinical_Measurement.ontology def: "The total number of leukocytes in 1 cubic millimeter of peripheral venous blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000027 ! white blood cell count created_by: mshimoyama creation_date: 2010-12-13T10:22:15Z [Term] id: CMO:0000366 name: differential white blood cell count namespace: Clinical_Measurement.ontology def: "The number of each type of leukocyte present in a specific volume of blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000027 ! white blood cell count created_by: mshimoyama creation_date: 2010-12-13T10:24:28Z [Term] id: CMO:0000367 name: granulocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of granulocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic Laboratory Tests 4th Ed] is_a: CMO:0000024 ! differential white blood cell percentage created_by: mshimoyama creation_date: 2010-12-13T10:35:10Z [Term] id: CMO:0000368 name: basophil granulocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of basophil granulocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000367 ! granulocyte percentage created_by: mshimoyama creation_date: 2010-12-13T10:36:27Z [Term] id: CMO:0000369 name: eosinophil granulocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of eosinophil granulocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000367 ! granulocyte percentage created_by: mshimoyama creation_date: 2010-12-13T10:38:12Z [Term] id: CMO:0000370 name: neutrophil granulocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of neutrophil granulocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000367 ! granulocyte percentage created_by: mshimoyama creation_date: 2010-12-13T10:39:37Z [Term] id: CMO:0000371 name: lymphocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of lymphocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000024 ! differential white blood cell percentage created_by: mshimoyama creation_date: 2010-12-13T10:45:39Z [Term] id: CMO:0000372 name: B lymphocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of B lymphocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000371 ! lymphocyte percentage created_by: mshimoyama creation_date: 2010-12-13T10:47:04Z [Term] id: CMO:0000373 name: T lymphocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of T lymphocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000371 ! lymphocyte percentage created_by: mshimoyama creation_date: 2010-12-13T10:48:47Z [Term] id: CMO:0000374 name: monocyte percentage namespace: Clinical_Measurement.ontology def: "The percentage of monocytes in a specified volume of peripheral venous blood, usually 1 cubic millimeter." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000024 ! differential white blood cell percentage created_by: mshimoyama creation_date: 2010-12-13T10:52:32Z [Term] id: CMO:0000375 name: white blood cell percentage namespace: Clinical_Measurement.ontology def: "The percentage of white blood cells in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000036 ! blood cell measurement created_by: mshimoyama creation_date: 2010-12-13T10:54:31Z [Term] id: CMO:0000376 name: total serum bilirubin level namespace: Clinical_Measurement.ontology def: "Sum of direct and indirect bilirubin in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000123 ! blood bilirubin level created_by: mshimoyama creation_date: 2010-12-13T11:30:05Z [Term] id: CMO:0000377 name: plasma ionized calcium level namespace: Clinical_Measurement.ontology def: "The level of calcium ions in a specified volume of plasma." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000065 ! plasma calcium level created_by: mshimoyama creation_date: 2010-12-13T12:17:18Z [Term] id: CMO:0000378 name: total plasma calcium level namespace: Clinical_Measurement.ontology def: "The amount of calcium ions and protein bound calcium in a specified volume of plasma." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000065 ! plasma calcium level created_by: mshimoyama creation_date: 2010-12-13T01:18:55Z [Term] id: CMO:0000379 name: blood pH namespace: Clinical_Measurement.ontology def: "pH is a measure of acidity determined by the negative logarithm of hydrogen ion concentration in the blood." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000035 ! blood measurement created_by: mshimoyama creation_date: 2010-12-13T02:36:29Z [Term] id: CMO:0000380 name: total lung capacity namespace: Clinical_Measurement.ontology def: "Total volume to which lungs can be expanded with greatest inspiratory effort." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed] is_a: CMO:0000094 ! respiratory system measurement created_by: mshimoyama creation_date: 2010-12-16T01:24:14Z [Term] id: CMO:0000381 name: partial pressure of blood oxygen (Po2) namespace: Clinical_Measurement.ontology def: "The fraction of pressure exerted by the total number of gas molecules in a specified volume of blood which can be attributed to the number of oxygen molecules." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "PaO2" RELATED [] is_a: CMO:0000225 ! arterial blood gas measurement created_by: mshimoyama creation_date: 2010-12-13T03:58:25Z [Term] id: CMO:0000382 name: urine chloride level namespace: Clinical_Measurement.ontology def: "The amount of chloride ions in a specific volume of urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000593 ! urine electrolyte level created_by: mshimoyama creation_date: 2010-12-17T10:27:35Z [Term] id: CMO:0000383 name: urine glucose level namespace: Clinical_Measurement.ontology def: "The amount of glucose in a specified volume of urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-12-17T10:31:33Z [Term] id: CMO:0000384 name: urine albumin-creatinine ratio namespace: Clinical_Measurement.ontology def: "Comparison of urine microalbumin, that is, a level of albumin in the urine which is above normal but not detectable with routine protein testing, to amount of creatinine in a specified volume of urine. Often expressed as microalbumin concentration divided by creatinine concentration times 1000 mg per gram." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] synonym: "urine microalbumin-creatinine ratio" RELATED [] is_a: CMO:0000130 ! urine albumin level created_by: mshimoyama creation_date: 2010-12-17T10:38:56Z [Term] id: CMO:0000385 name: urine osmolality namespace: Clinical_Measurement.ontology def: "The number of dissolved particles in a specified volume of urine." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-12-17T10:43:46Z [Term] id: CMO:0000386 name: urine color namespace: Clinical_Measurement.ontology def: "The color of urine voided from the body." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2010-12-17T11:03:16Z [Term] id: CMO:0000387 name: forelimb morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000185 ! limb morphological measurement created_by: mshimoyama creation_date: 2010-12-17T01:05:23Z [Term] id: CMO:0000388 name: hind limb morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000185 ! limb morphological measurement created_by: mshimoyama creation_date: 2010-12-17T01:06:38Z [Term] id: CMO:0000389 name: reproduction measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000000 ! clinical measurement created_by: mshimoyama creation_date: 2010-12-28T11:41:32Z [Term] id: CMO:0000390 name: maternal age at first egg production namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T11:42:11Z [Term] id: CMO:0000391 name: maternal age at birth of last offspring namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T11:42:39Z [Term] id: CMO:0000392 name: age of puberty namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T11:43:09Z [Term] id: CMO:0000393 name: size of newly born offspring namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T11:44:29Z [Term] id: CMO:0000394 name: time interval between offspring namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T11:45:46Z [Term] id: CMO:0000395 name: egg yolk weight, fowl namespace: Clinical_Measurement.ontology def: "Weight of the yellow portion of the egg of a bird." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000402 ! egg measurement, fowl created_by: mshimoyama creation_date: 2010-12-28T01:29:51Z [Term] id: CMO:0000396 name: egg production rate, fowl namespace: Clinical_Measurement.ontology def: "Number of eggs laid by a bird divided by the number of days over which they are produced" [C:animal QTL] is_a: CMO:0000397 ! egg number, fowl created_by: mshimoyama creation_date: 2010-12-28T11:47:56Z [Term] id: CMO:0000397 name: egg number, fowl namespace: Clinical_Measurement.ontology is_a: CMO:0000402 ! egg measurement, fowl created_by: mshimoyama creation_date: 2010-12-28T11:49:00Z [Term] id: CMO:0000398 name: ejaculation measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T11:49:45Z [Term] id: CMO:0000399 name: ejaculation duration namespace: Clinical_Measurement.ontology def: "Duration of ejaculation from start to finish." [c:animal QTL] is_a: CMO:0000398 ! ejaculation measurement created_by: mshimoyama creation_date: 2010-12-28T11:50:01Z [Term] id: CMO:0000400 name: fertilization measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T11:51:17Z [Term] id: CMO:0000401 name: cleaved embryo number, post IVF treatment namespace: Clinical_Measurement.ontology is_a: CMO:0000400 ! fertilization measurement created_by: mshimoyama creation_date: 2010-12-28T11:51:42Z [Term] id: CMO:0000402 name: egg measurement, fowl namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T01:27:31Z [Term] id: CMO:0000403 name: egg yolk height to diameter ratio, fowl namespace: Clinical_Measurement.ontology def: "The height of the egg yolk of a bird divided by the diameter of the yolk." [C:animal QTL] is_a: CMO:0000402 ! egg measurement, fowl created_by: mshimoyama creation_date: 2010-12-28T01:32:33Z [Term] id: CMO:0000404 name: female reproductive organ morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of any organ which is part of the complex of female gonads, associated ducts, and external genitalia concerned with sexual reproduction." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000068 ! organ morphological measurement created_by: mshimoyama creation_date: 2010-12-28T01:34:17Z [Term] id: CMO:0000405 name: ovary weight namespace: Clinical_Measurement.ontology synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000404 ! female reproductive organ morphological measurement created_by: mshimoyama creation_date: 2010-12-28T01:34:30Z [Term] id: CMO:0000406 name: ovary weight, single namespace: Clinical_Measurement.ontology def: "Weight of the female sexual gland in which the oocytes are formed." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000405 ! ovary weight created_by: mshimoyama creation_date: 2010-12-28T01:34:55Z [Term] id: CMO:0000407 name: ovary weight, both namespace: Clinical_Measurement.ontology def: "Total weight of both of the female sexual glands in which the oocytes are formed." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000405 ! ovary weight created_by: mshimoyama creation_date: 2010-12-28T01:35:07Z [Term] id: CMO:0000408 name: uterine horn length namespace: Clinical_Measurement.ontology def: "Distance between the two ends of one of the tubular extensions from the uterine body to which the uterine tube is connected." [C:animal QTL] is_a: CMO:0000404 ! female reproductive organ morphological measurement created_by: mshimoyama creation_date: 2010-12-28T01:41:25Z [Term] id: CMO:0000409 name: right uterine horn length namespace: Clinical_Measurement.ontology is_a: CMO:0000408 ! uterine horn length created_by: mshimoyama creation_date: 2010-12-28T01:44:53Z [Term] id: CMO:0000410 name: left uterine horn length namespace: Clinical_Measurement.ontology is_a: CMO:0000408 ! uterine horn length created_by: mshimoyama creation_date: 2010-12-28T01:45:07Z [Term] id: CMO:0000411 name: uterine horn weight namespace: Clinical_Measurement.ontology is_a: CMO:0000404 ! female reproductive organ morphological measurement created_by: mshimoyama creation_date: 2010-12-28T01:45:29Z [Term] id: CMO:0000412 name: right uterine horn weight namespace: Clinical_Measurement.ontology is_a: CMO:0000411 ! uterine horn weight created_by: mshimoyama creation_date: 2010-12-28T01:45:41Z [Term] id: CMO:0000413 name: left uterine horn weight namespace: Clinical_Measurement.ontology is_a: CMO:0000411 ! uterine horn weight created_by: mshimoyama creation_date: 2010-12-28T01:45:55Z [Term] id: CMO:0000414 name: mammary organ morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of any part of the structure which includes and encases the mammary gland, the specialized gland of the skin of female mammals, which secretes milk for nourishment of the young." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000068 ! organ morphological measurement created_by: mshimoyama creation_date: 2010-12-28T01:50:30Z [Term] id: CMO:0000415 name: udder height namespace: Clinical_Measurement.ontology def: "Distance from the floor of the udder, the mammary organ or cattle and certain other mammals, to the point at the top where it joins the body wall. The udder is a large bag like envelope containing two or more glands, each having a teat." [C:animal QTL, Dorland:Dorland's Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000416 ! udder measurement created_by: mshimoyama creation_date: 2010-12-28T01:50:50Z [Term] id: CMO:0000416 name: udder measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000414 ! mammary organ morphological measurement created_by: mshimoyama creation_date: 2010-12-28T01:54:27Z [Term] id: CMO:0000417 name: udder width namespace: Clinical_Measurement.ontology def: "Distance from side to side of the udder, the mammary organ of cattle and certain other mammals, at the top of the rear attachment to the body." [C:animal QTL, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000416 ! udder measurement created_by: mshimoyama creation_date: 2010-12-28T02:07:55Z [Term] id: CMO:0000418 name: growth measurement namespace: Clinical_Measurement.ontology def: "Measure of increase of in size of an organism over a specified period of time." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000000 ! clinical measurement created_by: mshimoyama creation_date: 2010-12-28T02:18:16Z [Term] id: CMO:0000419 name: average daily body weight gain namespace: Clinical_Measurement.ontology def: "Average increase in weight per day as calculated from total weight gain over a specified period of time." [C:animal QTL] is_a: CMO:0000418 ! growth measurement created_by: mshimoyama creation_date: 2010-12-28T02:21:12Z [Term] id: CMO:0000420 name: body weight gain namespace: Clinical_Measurement.ontology def: "Increase in an organism's body weight over a specified period of time." [MS:MS] is_a: CMO:0000418 ! growth measurement created_by: mshimoyama creation_date: 2010-12-28T02:22:36Z [Term] id: CMO:0000421 name: carcass morphological measurement namespace: Clinical_Measurement.ontology def: "Measure of the body of an organism after slaughter, with particular parts removed, often the head, hide or skin and internal organs." [C:animal QTL] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-12-28T02:25:11Z [Term] id: CMO:0000422 name: carcass length namespace: Clinical_Measurement.ontology def: "Distance from end to end of animal after slaughter and removal of the head." [ms:ms] is_a: CMO:0000421 ! carcass morphological measurement created_by: mshimoyama creation_date: 2010-12-28T02:35:22Z [Term] id: CMO:0000423 name: copulation duration namespace: Clinical_Measurement.ontology def: "Length of time a female and male pair are in position for sexual union." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, ms:ms] is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-28T03:22:52Z [Term] id: CMO:0000424 name: forelimb weight namespace: Clinical_Measurement.ontology is_a: CMO:0000387 ! forelimb morphological measurement created_by: mshimoyama creation_date: 2010-12-29T09:34:51Z [Term] id: CMO:0000425 name: wing weight namespace: Clinical_Measurement.ontology def: "The weight of one of the paired anterior appendages of birds usually consisting of the humerus, radius, ulna, and metacarpus and all associated muscle and skin." [C:animal QTL, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000424 ! forelimb weight created_by: mshimoyama creation_date: 2010-12-29T09:35:05Z [Term] id: CMO:0000426 name: consumption measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000000 ! clinical measurement created_by: mshimoyama creation_date: 2010-12-29T09:44:29Z [Term] id: CMO:0000427 name: food intake rate namespace: Clinical_Measurement.ontology def: "Amount of food consumed over a specified period of time." [ms:ms] is_a: CMO:0000772 ! food intake measurement created_by: mshimoyama creation_date: 2010-12-29T09:45:12Z [Term] id: CMO:0000428 name: back fat measurement namespace: Clinical_Measurement.ontology def: "Adipose tissue measurement in the posterior part of the trunk, usually from the neck to the pelvis." [Dorland:Dorland's Illustrated Medical Dictionary] is_a: CMO:0000224 ! body region fat morphological measurement created_by: mshimoyama creation_date: 2010-12-29T09:47:06Z [Term] id: CMO:0000429 name: back fat weight namespace: Clinical_Measurement.ontology def: "Total weight of all adipose tissue located in the posterior region of the trunk, usually from the neck to the pelvis." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, ms:ms] is_a: CMO:0000428 ! back fat measurement created_by: mshimoyama creation_date: 2010-12-29T09:54:43Z [Term] id: CMO:0000430 name: calculated back fat measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000428 ! back fat measurement created_by: mshimoyama creation_date: 2010-12-29T09:58:17Z [Term] id: CMO:0000431 name: back fat percentage namespace: Clinical_Measurement.ontology def: "Weight of subcutaneous fat along the back expressed as a percentage of total body or carcass weight." [C:animal QTL] is_a: CMO:0000430 ! calculated back fat measurement created_by: mshimoyama creation_date: 2010-12-29T09:58:44Z [Term] id: CMO:0000432 name: back fat thickness namespace: Clinical_Measurement.ontology def: "Depth of adipose tissue located in the area posterior part of the trunk." [ms:ms] is_a: CMO:0000428 ! back fat measurement created_by: mshimoyama creation_date: 2010-12-29T10:00:41Z [Term] id: CMO:0000433 name: back fat thickness, 10th rib namespace: Clinical_Measurement.ontology def: "Depth of adipose tissue in the posterior trunk area at the location of the 10th rib." [C:animal QTL] is_a: CMO:0000432 ! back fat thickness created_by: mshimoyama creation_date: 2010-12-29T10:01:57Z [Term] id: CMO:0000434 name: back fat thickness, midpoint namespace: Clinical_Measurement.ontology def: "Depth of adipose tissue in the posterior area of the trunk, at the midpoint of the body length." [C:animal QTL] is_a: CMO:0000432 ! back fat thickness created_by: mshimoyama creation_date: 2010-12-29T10:04:02Z [Term] id: CMO:0000435 name: back fat thickness, 3rd lumbar vertebra namespace: Clinical_Measurement.ontology def: "Depth of the adipose tissue in the posterior trunk area located at the region of the third lumbar vertebra." [C:animal QTL] is_a: CMO:0000432 ! back fat thickness created_by: mshimoyama creation_date: 2010-12-29T10:05:53Z [Term] id: CMO:0000436 name: back fat thickness, 1st rib namespace: Clinical_Measurement.ontology def: "Depth of adipose tissue in the posterior trunk area located in the region of the 1st rib." [C:animal QTL] is_a: CMO:0000432 ! back fat thickness created_by: mshimoyama creation_date: 2010-12-29T10:27:30Z [Term] id: CMO:0000437 name: skeletal morphological measurement namespace: Clinical_Measurement.ontology def: "Measure of the bony framework of the body or a portion of this framework." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "skeleton morphological measurement" RELATED [] is_a: CMO:0000021 ! body morphological measurement is_a: CMO:0001159 ! skeletal system measurement created_by: mshimoyama creation_date: 2010-12-29T02:07:26Z [Term] id: CMO:0000438 name: vertebrae number namespace: Clinical_Measurement.ontology def: "Number of bones of the spinal column." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:08:58Z [Term] id: CMO:0000439 name: spinal column length namespace: Clinical_Measurement.ontology def: "Distance from first vertebra to last vertebra making up the spinal column." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000437 ! skeletal morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:10:41Z [Term] id: CMO:0000440 name: ulna length namespace: Clinical_Measurement.ontology def: "The distance from one end to the other of the ulna, the major bone of the forelimb." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:13:16Z [Term] id: CMO:0000441 name: tail weight namespace: Clinical_Measurement.ontology def: "Weight of the appendage extending from the posterior end of the trunk." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000190 ! tail morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:15:54Z [Term] id: CMO:0000442 name: femur length namespace: Clinical_Measurement.ontology def: "Distance from one end to the other of the femur, the major bone in the upper portion of the hindlimb." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:18:42Z [Term] id: CMO:0000443 name: bone morphological measurement namespace: Clinical_Measurement.ontology def: "Measure of a single bone within the skeletal system." [ms:ms] is_a: CMO:0000437 ! skeletal morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:20:55Z [Term] id: CMO:0000444 name: femur weight namespace: Clinical_Measurement.ontology def: "Weight of the femur, the major bone of the upper portion of the hindlimb." [ms:ms] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:21:44Z [Term] id: CMO:0000445 name: teat number namespace: Clinical_Measurement.ontology def: "The number of teats, protuberances on the mammary glands, breasts or udders of female mammals through which milk is excreted." [Encarta:Encarta World English Dictionary] is_a: CMO:0000414 ! mammary organ morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:23:20Z [Term] id: CMO:0000446 name: interteat distance namespace: Clinical_Measurement.ontology def: "Distance between any two teats, protuberances from the breasts, mammary glands or udders of female mammals which excrete milk.." [C:animal QTL] is_a: CMO:0000414 ! mammary organ morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:25:47Z [Term] id: CMO:0000447 name: teat length namespace: Clinical_Measurement.ontology def: "Distance from top of teat attached to mammary gland, breast or udder to the part of the teat farthest away." [ms:ms] is_a: CMO:0000414 ! mammary organ morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:27:16Z [Term] id: CMO:0000448 name: total muscle weight namespace: Clinical_Measurement.ontology def: "Aggregated weight of all muscle tissue from a single individual." [ms:ms] is_a: CMO:0000131 ! muscle weight created_by: mshimoyama creation_date: 2010-12-29T02:31:27Z [Term] id: CMO:0000449 name: thoracic vertebrae number namespace: Clinical_Measurement.ontology def: "The number of vertebrae in the spinal column within the thorax, the middle portion of the spinal column usually extending from the neck to the thoracic diaphragm, encased by the ribs." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000438 ! vertebrae number created_by: mshimoyama creation_date: 2010-12-29T02:32:50Z [Term] id: CMO:0000450 name: tibia length namespace: Clinical_Measurement.ontology def: "Distance from one end to the other of the tibia, the major bone in the lower part of the hindlimb." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:36:27Z [Term] id: CMO:0000451 name: tibia weight namespace: Clinical_Measurement.ontology def: "The weight of the tibia, the major bone of the lower portion of the hindlimb." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T02:37:42Z [Term] id: CMO:0000452 name: food intake duration namespace: Clinical_Measurement.ontology def: "Total amount of time spent consuming food during a specified period of time." [ms:ms] is_a: CMO:0000772 ! food intake measurement created_by: mshimoyama creation_date: 2010-12-29T02:39:03Z [Term] id: CMO:0000453 name: mid-tibia width namespace: Clinical_Measurement.ontology def: "Distance across the tibia, the major bone of the lower portion of the hindlimb, taken midway between the two ends of the bone." [C:animal QTL] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T03:09:23Z [Term] id: CMO:0000454 name: drink intake duration namespace: Clinical_Measurement.ontology def: "Total amount of time spent consuming liquids during a specified period of time." [ms:ms] is_a: CMO:0000771 ! drink intake measurement created_by: mshimoyama creation_date: 2010-12-29T03:15:35Z [Term] id: CMO:0000455 name: drink intake rate namespace: Clinical_Measurement.ontology def: "Amount of liquid consumed during a specified period of time." [ms:ms] is_a: CMO:0000771 ! drink intake measurement created_by: mshimoyama creation_date: 2010-12-29T03:16:47Z [Term] id: CMO:0000456 name: adipocyte measurement namespace: Clinical_Measurement.ontology def: "A measure of a single or group of fat cells, connective tissue cells specialized for the synthesis and storage of fat; such cells consist of a large cytoplasmic vesicle filled with globules of triglycerides with the nucleus displaced to one side and the cytoplasm seen as a thin line around the fat vesicle." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000227 ! cell measurement created_by: mshimoyama creation_date: 2010-12-29T03:39:16Z [Term] id: CMO:0000457 name: carcass circumference, butt namespace: Clinical_Measurement.ontology def: "Distance around a carcass taken in a parallel plane just above the anal opening." [C:animal QTL] is_a: CMO:0000421 ! carcass morphological measurement created_by: mshimoyama creation_date: 2010-12-29T03:48:38Z [Term] id: CMO:0000458 name: carcass weight namespace: Clinical_Measurement.ontology def: "The weight of an animal's body after slaughter with particular parts removed, often the head, internal organs and skin or hide." [C:animal QTL] is_a: CMO:0000421 ! carcass morphological measurement created_by: mshimoyama creation_date: 2010-12-29T03:51:56Z [Term] id: CMO:0000459 name: vertebra length, cervical namespace: Clinical_Measurement.ontology def: "The distance from end to end of a single cervical vertebra, one of the bones which makes up the neck skeletal frame." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T03:54:47Z [Term] id: CMO:0000460 name: cervical vertebral column length namespace: Clinical_Measurement.ontology def: "Distance from end to end of the expanse of the spinal column made up of cervical vertebrae, which constitutes the neck skeletal frame." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000437 ! skeletal morphological measurement created_by: mshimoyama creation_date: 2010-12-29T03:56:07Z [Term] id: CMO:0000461 name: total skeletal weight namespace: Clinical_Measurement.ontology def: "Aggregated weight of all the bones making up the skeleton or hard framework of an individual organism's body." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000437 ! skeletal morphological measurement created_by: mshimoyama creation_date: 2010-12-29T04:02:34Z [Term] id: CMO:0000462 name: carcass skeletal weight namespace: Clinical_Measurement.ontology def: "Aggregated weight of bones constituting the carcass of an animal after slaughter usually with portions removed such as the head." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000421 ! carcass morphological measurement is_a: CMO:0000461 ! total skeletal weight created_by: mshimoyama creation_date: 2010-12-29T04:03:59Z [Term] id: CMO:0000463 name: carcass width namespace: Clinical_Measurement.ontology def: "Distance from side to side of an organism's body after slaughter often with parts removed such as the head, skin or hide and internal organs." [ms:ms] is_a: CMO:0000421 ! carcass morphological measurement created_by: mshimoyama creation_date: 2010-12-29T04:06:56Z [Term] id: CMO:0000464 name: diaphragm weight namespace: Clinical_Measurement.ontology def: "Weight of the diaphragm, the muscle separating the thoracic and abdominal cavities." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0001148 ! skeletal muscle weight created_by: mshimoyama creation_date: 2010-12-29T04:17:44Z [Term] id: CMO:0000465 name: food intake volume, single feeding namespace: Clinical_Measurement.ontology def: "Volume of food consumed in a single feeding episode." [ms:ms] is_a: CMO:0000772 ! food intake measurement created_by: mshimoyama creation_date: 2010-12-29T04:21:19Z [Term] id: CMO:0000466 name: food intake weight, single feeding namespace: Clinical_Measurement.ontology def: "Weight of food consumed in a single feeding episode." [ms:ms] is_a: CMO:0000772 ! food intake measurement created_by: mshimoyama creation_date: 2010-12-29T04:23:19Z [Term] id: CMO:0000467 name: gestation period length namespace: Clinical_Measurement.ontology def: "Duration of pregnancy from time of fertilization of the oocyte until birth." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2010-12-29T04:26:29Z [Term] id: CMO:0000468 name: horn number namespace: Clinical_Measurement.ontology def: "Number of horns, pointed projections often found in pairs, on the head of an individual animal." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000021 ! body morphological measurement created_by: mshimoyama creation_date: 2010-12-29T04:30:29Z [Term] id: CMO:0000469 name: humerus length namespace: Clinical_Measurement.ontology def: "Distance from end to end of the humerus, the bone in the upper portion of the forelimb." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000443 ! bone morphological measurement created_by: mshimoyama creation_date: 2010-12-29T04:34:53Z [Term] id: CMO:0000470 name: small intestine weight namespace: Clinical_Measurement.ontology def: "Weight of the proximal end of the intestine extending from the pyloric valve to the cecum." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000331 ! intestine weight created_by: mshimoyama creation_date: 2010-12-29T04:38:07Z [Term] id: CMO:0000471 name: large intestine weight namespace: Clinical_Measurement.ontology def: "Weight of t the distal portion of the intestine extending from its junction with the small intestine to the anus." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000331 ! intestine weight created_by: mshimoyama creation_date: 2010-12-29T04:43:00Z [Term] id: CMO:0000472 name: teat number, left namespace: Clinical_Measurement.ontology def: "Number of teats located on the left side of an animal." [C:animal QTL] is_a: CMO:0000445 ! teat number created_by: mshimoyama creation_date: 2010-12-29T04:44:50Z [Term] id: CMO:0000473 name: teat number, right namespace: Clinical_Measurement.ontology def: "Number of teats located on the right side of an animal." [C:animal QTL] is_a: CMO:0000445 ! teat number created_by: mshimoyama creation_date: 2010-12-29T04:45:32Z [Term] id: CMO:0000474 name: carcass length, first cervical vertebra to pelvis namespace: Clinical_Measurement.ontology def: "The distance from first cervical vertebra to pelvis on an animal after slaughter." [ms:ms] is_a: CMO:0000422 ! carcass length created_by: mshimoyama creation_date: 2010-12-30T09:11:50Z [Term] id: CMO:0000475 name: carcass length, first rib to pelvis namespace: Clinical_Measurement.ontology def: "The distance from the first rib to pelvis on an animal after slaughter." [ms:ms] is_a: CMO:0000422 ! carcass length created_by: mshimoyama creation_date: 2010-12-30T09:12:12Z [Term] id: CMO:0000476 name: adipocyte count namespace: Clinical_Measurement.ontology def: "The number of fat cells in a specified sample of adipose tissue. A fat cell is a connective tissue cell specialized for the synthesis and storage of fat; such cells consist of a large cytoplasmic vesicle filled with globules of triglycerides with the nucleus displaced to one side and the cytoplasm seen as a thin line around the fat vesicle." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000456 ! adipocyte measurement created_by: mshimoyama creation_date: 2010-12-30T09:26:55Z [Term] id: CMO:0000477 name: plasma immunoglobulin measurement namespace: Clinical_Measurement.ontology def: "A measure related to immunoglobulin, a protein produced by plasma cells and lymphocytes which plays an essential role in the immune system by attaching to foreign substances in an effort to destroy them." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000055 ! plasma globulin level created_by: mshimoyama creation_date: 2010-12-30T12:33:33Z [Term] id: CMO:0000478 name: plasma antibody measurement namespace: Clinical_Measurement.ontology def: "A measure related to an immunoglobulin molecule possessing a specific amino acid sequence that binds to a specific antigen, a substance introduced into an organism which initiates an immune response including the production of the very antibodies which bind to it in an effort to destroy it." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000477 ! plasma immunoglobulin measurement created_by: mshimoyama creation_date: 2010-12-30T12:43:54Z [Term] id: CMO:0000479 name: E. coli specific antibody level namespace: Clinical_Measurement.ontology def: "The amount of immunoglobulin molecule with an amino acid sequence that binds with Escherichia coli, a Gram negative rod-shaped bacterium, in a specific volume of plasma." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000478 ! plasma antibody measurement created_by: mshimoyama creation_date: 2010-12-30T01:24:29Z [Term] id: CMO:0000480 name: E. coli specific antibody level, post challenge namespace: Clinical_Measurement.ontology def: "The amount of immunoglobulin molecule with a sequence that binds to Escherichia coli, a Gram negative rod-shaped bacteria, in a specific volume of plasma taken at a determined time point following a directed exposure to E. coli." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, ms:ms] is_a: CMO:0000478 ! plasma antibody measurement created_by: mshimoyama creation_date: 2010-12-30T01:29:33Z [Term] id: CMO:0000481 name: E. coli specific antibody level, post vaccination namespace: Clinical_Measurement.ontology def: "The amount of an immunoglobulin with a sequence that binds to Escherichia coli, a Gram negative rod-shaped bacteria, in a specific volume of plasma taken at a determined time point following vaccination for E. coli." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, ms:ms] is_a: CMO:0000478 ! plasma antibody measurement created_by: mshimoyama creation_date: 2010-12-30T01:34:48Z [Term] id: CMO:0000482 name: E. coli specific antibody level change, post vaccination namespace: Clinical_Measurement.ontology def: "Change in the amount of immunoglobulin molecule with sequence that binds to Escherichia coli, a Gram negative rod-shaped bacteria, in specified volumes of plasma taken before vaccination and at a determined time point after vaccination." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, ms:ms] is_a: CMO:0000478 ! plasma antibody measurement created_by: mshimoyama creation_date: 2010-12-30T01:37:29Z [Term] id: CMO:0000483 name: E. coli specific antibody level change, post challenge namespace: Clinical_Measurement.ontology def: "Change in the amount of immunoglobulin molecule with sequence that binds to Eschericia coli, a Gram negative rod-shaped bacteria in specified volumes of plasma taken before a directed E. coli exposure and at a determined time point after E. coli challenge." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, ms:ms] is_a: CMO:0000478 ! plasma antibody measurement created_by: mshimoyama creation_date: 2010-12-30T01:40:45Z [Term] id: CMO:0000484 name: adipose tissue composition measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000089 ! body fat morphological measurement created_by: mshimoyama creation_date: 2011-01-04T11:19:52Z [Term] id: CMO:0000485 name: blood adiponectin level namespace: Clinical_Measurement.ontology def: "Amount of adiponectin, a hormone that modulates glucose regulation and fatty acid catabolism, in a specified volume of blood." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000286 ! blood peptide hormone level created_by: mshimoyama creation_date: 2011-01-04T11:21:32Z [Term] id: CMO:0000486 name: adipose tissue adiponectin level namespace: Clinical_Measurement.ontology def: "The amount of adiponectin, a hormone that modulates glucose regulation and fatty acid catabolism, in a specified sample of adipose tissue." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000484 ! adipose tissue composition measurement created_by: mshimoyama creation_date: 2011-01-04T11:23:56Z [Term] id: CMO:0000487 name: serum aldosterone level namespace: Clinical_Measurement.ontology def: "The amount of aldosterone, a hormone produced by the adrenal cortex which acts as a mineralocorticoid, found in a specified volume of serum." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000517 ! blood aldosterone level created_by: mshimoyama creation_date: 2011-01-04T11:34:18Z [Term] id: CMO:0000488 name: serum bicarbonate level namespace: Clinical_Measurement.ontology def: "The amount of carbonic acid dissolved in carbon dioxide and carbonate ion found in a specified volume of serum." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000498 ! blood bicarbonate level created_by: mshimoyama creation_date: 2011-01-04T12:01:33Z [Term] id: CMO:0000489 name: serum chloride level namespace: Clinical_Measurement.ontology def: "The amount of chloride ions found in a specified volume of serum." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000497 ! blood chloride level created_by: mshimoyama creation_date: 2011-01-04T12:06:48Z [Term] id: CMO:0000490 name: blood glomerular filtration rate namespace: Clinical_Measurement.ontology def: "An estimation of the volume of fluid filtered from the kidney glomerular capillaries into the Bowman's capsule per specified unit of time based on serum creatinine level, wieght and age of organism and other factors." [wikipedia:en.wikipedia.org] is_a: CMO:0000023 ! blood chemistry measurement created_by: mshimoyama creation_date: 2011-01-04T02:41:58Z [Term] id: CMO:0000491 name: blood glomerular filtration rate, Diet in Renal Disease Formula (MDRD) namespace: Clinical_Measurement.ontology is_a: CMO:0000490 ! blood glomerular filtration rate created_by: mshimoyama creation_date: 2011-01-04T02:48:14Z [Term] id: CMO:0000492 name: blood glomerular filtration rate, Chronic Kidney Disease Epidemiology Collaboration formula (CKE-EPI) namespace: Clinical_Measurement.ontology is_a: CMO:0000490 ! blood glomerular filtration rate created_by: mshimoyama creation_date: 2011-01-04T02:48:55Z [Term] id: CMO:0000493 name: blood glomerular filtration rate, May Quadratic formula namespace: Clinical_Measurement.ontology is_a: CMO:0000490 ! blood glomerular filtration rate created_by: mshimoyama creation_date: 2011-01-04T02:50:15Z [Term] id: CMO:0000494 name: blood glomerular filtration rate, Schwartz formula namespace: Clinical_Measurement.ontology is_a: CMO:0000490 ! blood glomerular filtration rate created_by: mshimoyama creation_date: 2011-01-04T02:50:43Z [Term] id: CMO:0000495 name: serum potassium level namespace: Clinical_Measurement.ontology def: "Amount of potassium ions in a specified volume of serum." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000496 ! blood potassium level created_by: mshimoyama creation_date: 2011-01-04T02:52:02Z [Term] id: CMO:0000496 name: blood potassium level namespace: Clinical_Measurement.ontology def: "The amount of potassium ions in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000063 ! blood electrolyte measurement created_by: mshimoyama creation_date: 2011-01-04T02:53:16Z [Term] id: CMO:0000497 name: blood chloride level namespace: Clinical_Measurement.ontology def: "The amount of chloride ions in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000063 ! blood electrolyte measurement created_by: mshimoyama creation_date: 2011-01-04T02:54:11Z [Term] id: CMO:0000498 name: blood bicarbonate level namespace: Clinical_Measurement.ontology is_a: CMO:0000063 ! blood electrolyte measurement created_by: mshimoyama creation_date: 2011-01-04T02:54:42Z [Term] id: CMO:0000499 name: blood sodium level namespace: Clinical_Measurement.ontology def: "The amount of sodium ions in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000063 ! blood electrolyte measurement created_by: mshimoyama creation_date: 2011-01-04T02:55:51Z [Term] id: CMO:0000500 name: serum sodium level namespace: Clinical_Measurement.ontology def: "The amount of sodium ions in a specified volume of serum." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000499 ! blood sodium level created_by: mshimoyama creation_date: 2011-01-04T02:56:30Z [Term] id: CMO:0000501 name: blood uric acid level namespace: Clinical_Measurement.ontology def: "The amount of uric acid, a heterocyclic compound of carbon, nitrogen, oxygen, and hydrogen,the end product of purine catabolism, in a specified volume of blood." [wikipedia:en.wikipedia.org] is_a: CMO:0000035 ! blood measurement created_by: mshimoyama creation_date: 2011-01-04T03:05:36Z [Term] id: CMO:0000502 name: blood calcium level namespace: Clinical_Measurement.ontology def: "The amount of calcium ions in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000063 ! blood electrolyte measurement created_by: mshimoyama creation_date: 2011-01-04T03:13:20Z [Term] id: CMO:0000503 name: serum calcium level namespace: Clinical_Measurement.ontology def: "The amount of calcium ions in a specified volume of serum." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000502 ! blood calcium level created_by: mshimoyama creation_date: 2011-01-04T03:15:06Z [Term] id: CMO:0000504 name: blood phosphate level namespace: Clinical_Measurement.ontology is_a: CMO:0000063 ! blood electrolyte measurement created_by: mshimoyama creation_date: 2011-01-04T03:28:18Z [Term] id: CMO:0000505 name: blood magnesium level namespace: Clinical_Measurement.ontology is_a: CMO:0000063 ! blood electrolyte measurement created_by: mshimoyama creation_date: 2011-01-04T03:28:42Z [Term] id: CMO:0000506 name: hemoglobin concentration namespace: Clinical_Measurement.ontology def: "The amount of hemoglobin, the red oxygen-carrying pigment of erythrocytes, in a specified volume of blood, as calculated from the optical density of a solution of lysed red cells in which hemoglobin has been converted to cyanomethemoglobin and measured with a spectrophotometer." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, ms:ms] synonym: "hemoglobin absorbance" RELATED [] is_a: CMO:0000508 ! hemoglobin measurement created_by: mshimoyama creation_date: 2011-01-05T08:36:48Z [Term] id: CMO:0000507 name: hemoglobin absorbance namespace: Clinical_Measurement.ontology def: "The optical density as calculated from the intensity of light at a specified wavelength as it passes through a solution of lysed red blood cells." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000508 ! hemoglobin measurement created_by: mshimoyama creation_date: 2011-01-05T09:20:10Z [Term] id: CMO:0000508 name: hemoglobin measurement namespace: Clinical_Measurement.ontology def: "A measure of the oxygen carrying pigment of erythrocytes." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000036 ! blood cell measurement created_by: mshimoyama creation_date: 2011-01-05T09:20:32Z [Term] id: CMO:0000509 name: blood androstenedione level namespace: Clinical_Measurement.ontology def: "The amount of androstenedione, an androgenic steroid produced by the testis, adrenal cortex and ovary, in a specified volume of blood." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000124 ! blood sex steroid level created_by: mshimoyama creation_date: 2011-01-05T09:41:56Z [Term] id: CMO:0000510 name: blood dehydroepiandrosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000124 ! blood sex steroid level created_by: mshimoyama creation_date: 2011-01-05T09:42:21Z [Term] id: CMO:0000511 name: blood dihydrotestosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000124 ! blood sex steroid level created_by: mshimoyama creation_date: 2011-01-05T09:42:48Z [Term] id: CMO:0000512 name: blood testosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000124 ! blood sex steroid level created_by: mshimoyama creation_date: 2011-01-05T09:43:10Z [Term] id: CMO:0000513 name: blood estradiol level namespace: Clinical_Measurement.ontology is_a: CMO:0000124 ! blood sex steroid level created_by: mshimoyama creation_date: 2011-01-05T09:43:25Z [Term] id: CMO:0000514 name: blood progesterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000124 ! blood sex steroid level created_by: mshimoyama creation_date: 2011-01-05T09:43:43Z [Term] id: CMO:0000515 name: blood cortisol level namespace: Clinical_Measurement.ontology def: "The amount of cortisol, the major natural glucocorticoid synthesized in the adrenal cortex and which affects the metabolism of glucose, protein and fats, in a specific volume of blood." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000040 ! blood glucocorticoid level created_by: mshimoyama creation_date: 2011-01-05T10:02:46Z [Term] id: CMO:0000516 name: serum cortisol level namespace: Clinical_Measurement.ontology def: "The amount of cortisol, a glucocorticoid which affects the metabolism of glucose, protein and fats, in a specified volume of serum." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: CMO:0000515 ! blood cortisol level created_by: mshimoyama creation_date: 2011-01-05T10:04:43Z [Term] id: CMO:0000517 name: blood aldosterone level namespace: Clinical_Measurement.ontology def: "The amount of aldosterone, a hormone produced by the adrenal cortex, which acts as a mineralcorticoid, found in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0001004 ! blood steroid hormone level created_by: mshimoyama creation_date: 2011-01-05T10:08:30Z [Term] id: CMO:0000518 name: blood apolipoprotein level namespace: Clinical_Measurement.ontology alt_id: CMO:0000552 def: "The amount of apolipoprotein, any or all of the protein constituents of lipoproteins found in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 31st Ed] is_a: CMO:0000028 ! blood protein measurement is_a: CMO:0000119 ! blood lipoprotein level created_by: mshimoyama creation_date: 2011-01-05T10:16:40Z [Term] id: CMO:0000519 name: blood apolipoprotein A level namespace: Clinical_Measurement.ontology def: "The amount of apolipoprotein A, a class of apolipoproteins that occur primarily in high density lipoproteins, in a specified volume of blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] is_a: CMO:0000518 ! blood apolipoprotein level created_by: mshimoyama creation_date: 2011-01-05T10:20:46Z [Term] id: CMO:0000520 name: blood apolipoprotein AI level namespace: Clinical_Measurement.ontology is_a: CMO:0000519 ! blood apolipoprotein A level created_by: mshimoyama creation_date: 2011-01-05T10:23:03Z [Term] id: CMO:0000521 name: blood apolipoprotein AII level namespace: Clinical_Measurement.ontology is_a: CMO:0000519 ! blood apolipoprotein A level created_by: mshimoyama creation_date: 2011-01-05T10:23:21Z [Term] id: CMO:0000522 name: blood apoliprotein B level namespace: Clinical_Measurement.ontology is_a: CMO:0000518 ! blood apolipoprotein level created_by: mshimoyama creation_date: 2011-01-05T10:23:51Z [Term] id: CMO:0000523 name: caculated blood apolipoprotein level namespace: Clinical_Measurement.ontology is_a: CMO:0000518 ! blood apolipoprotein level created_by: mshimoyama creation_date: 2011-01-05T10:24:54Z [Term] id: CMO:0000524 name: blood apolipoprotein AI to apolipoprotein B ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000523 ! caculated blood apolipoprotein level created_by: mshimoyama creation_date: 2011-01-05T10:25:16Z [Term] id: CMO:0000525 name: blood low density lipoprotein specific apolipoprotein B level namespace: Clinical_Measurement.ontology is_a: CMO:0000522 ! blood apoliprotein B level created_by: mshimoyama creation_date: 2011-01-05T10:26:52Z [Term] id: CMO:0000526 name: blood very low density lipoprotein specific apolipoprotein B level namespace: Clinical_Measurement.ontology is_a: CMO:0000522 ! blood apoliprotein B level created_by: mshimoyama creation_date: 2011-01-05T10:28:01Z [Term] id: CMO:0000527 name: blood chylomicron level namespace: Clinical_Measurement.ontology def: "The amount of chylomicrons, a class of lipoproteins that transport triglycerides and cholesterol from the small intestine to other tissues, found in a specified volume of blood." [Dorland:Dorlands Illustrated Medical Dictionary] is_a: CMO:0000119 ! blood lipoprotein level created_by: mshimoyama creation_date: 2011-01-05T10:33:25Z [Term] id: CMO:0000528 name: pulmonary artery diastolic blood pressure namespace: Clinical_Measurement.ontology def: "Blood pressure measured in the pulmonary artery during diastole, that is, during dilation or relaxation of the heart ventricles." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000005 ! diastolic blood pressure is_a: CMO:0000782 ! pulmonary arterial blood pressure measurement created_by: mshimoyama creation_date: 2011-01-21T08:57:36Z [Term] id: CMO:0000529 name: pulmonary artery systolic blood pressure namespace: Clinical_Measurement.ontology def: "Blood pressure measured in the pulmonary artery during systole, that is, during contraction of the heart ventricles." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000004 ! systolic blood pressure is_a: CMO:0000782 ! pulmonary arterial blood pressure measurement created_by: mshimoyama creation_date: 2011-01-21T08:58:00Z [Term] id: CMO:0000530 name: heart left ventricle weight to body weight ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of the left ventricle, the lower chamber of the left side of the heart, which pumps oxygenated blood out through the aorta to all the tissues of the body, is divided by the total weight of the body and presented as a ratio thus normalizing it to body weight." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0001123 ! calculated heart left ventricle weight created_by: mshimoyama creation_date: 2011-01-21T09:42:17Z [Term] id: CMO:0000531 name: percent change in respiration rate namespace: Clinical_Measurement.ontology def: "Difference in respiratory rate between two points in time or two conditions expressed as a percentage." [MS:RGD] is_a: CMO:0000289 ! respiration rate created_by: mshimoyama creation_date: 2011-10-28T04:18:17Z [Term] id: CMO:0000532 name: percent change in tidal volume namespace: Clinical_Measurement.ontology def: "Difference in tidal volume between two points in time or two conditions expressed as a percentage." [MS:RGD] is_a: CMO:0000222 ! tidal volume created_by: mshimoyama creation_date: 2011-10-28T04:22:41Z [Term] id: CMO:0000533 name: absolute change in mean arterial blood pressure namespace: Clinical_Measurement.ontology def: "The difference in mean arterial blood pressure between two points in time or two conditions expressed as the result of the subtraction in and of itself without comparison by ratio with another quantity." [Dictionary:Collins Online English Dictionary, RGD:MS, Website:http\://www.psychwiki.com/wiki/What_is_absolute_change%3F] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000009 ! mean arterial blood pressure is_a: CMO:0000743 ! change in calculated blood pressure created_by: mshimoyama creation_date: 2011-10-28T04:24:16Z [Term] id: CMO:0000534 name: absolute change in heart rate namespace: Clinical_Measurement.ontology def: "Absolute difference in heart rate between two points in time or two conditions." [MS:RGD] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000002 ! heart rate created_by: mshimoyama creation_date: 2011-10-28T04:25:37Z [Term] id: CMO:0000535 name: blood ethanol level namespace: Clinical_Measurement.ontology is_a: CMO:0000023 ! blood chemistry measurement created_by: mshimoyama creation_date: 2011-10-28T04:28:17Z [Term] id: CMO:0000536 name: glomerulus count namespace: Clinical_Measurement.ontology def: "The number of glomeruli in all or part of a kidney. Glomeruli are the tufts of capillaries each situated within a Bowman's capsule at the end of a renal tubule in the vertebrate kidney that filter waste products from the blood and thus initiate urine formation." [Dictionary:The American Heritage Medical Dictionary] synonym: "glomeruli count" EXACT [] is_a: CMO:0000087 ! kidney morphological measurement created_by: mshimoyama creation_date: 2011-10-28T04:29:17Z [Term] id: CMO:0000537 name: plasma creatinine level namespace: Clinical_Measurement.ontology is_a: CMO:0000538 ! blood creatinine level is_a: CMO:0000768 ! plasma creatinine measurement created_by: mshimoyama creation_date: 2011-10-28T04:30:50Z [Term] id: CMO:0000538 name: blood creatinine level namespace: Clinical_Measurement.ontology is_a: CMO:0000767 ! blood creatinine measurement created_by: mshimoyama creation_date: 2011-10-28T04:31:55Z [Term] id: CMO:0000539 name: heart left ventricle dry weight namespace: Clinical_Measurement.ontology is_a: CMO:0000776 ! heart left ventricle weight created_by: mshimoyama creation_date: 2011-10-28T04:33:14Z [Term] id: CMO:0000540 name: heart left ventricle weight as a percentage of body weight namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of the left ventricle, the lower chamber of the left side of the heart, which pumps oxygenated blood out through the aorta to all the tissues of the body, is presented as percentage of the total weight of the body thus normalizing it to body weight." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0001123 ! calculated heart left ventricle weight created_by: mshimoyama creation_date: 2011-10-28T04:33:59Z [Term] id: CMO:0000541 name: serum magnesium level namespace: Clinical_Measurement.ontology is_a: CMO:0000505 ! blood magnesium level created_by: mshimoyama creation_date: 2011-11-02T02:43:36Z [Term] id: CMO:0000542 name: serum phosphate level namespace: Clinical_Measurement.ontology is_a: CMO:0000504 ! blood phosphate level created_by: mshimoyama creation_date: 2011-11-02T02:44:01Z [Term] id: CMO:0000543 name: serum glucose level namespace: Clinical_Measurement.ontology is_a: CMO:0000046 ! blood glucose level created_by: mshimoyama creation_date: 2011-11-02T02:45:05Z [Term] id: CMO:0000544 name: plasma lipid level namespace: Clinical_Measurement.ontology is_a: CMO:0000050 ! blood lipid measurement created_by: mshimoyama creation_date: 2011-11-02T02:45:28Z [Term] id: CMO:0000545 name: serum lipid level namespace: Clinical_Measurement.ontology is_a: CMO:0000050 ! blood lipid measurement created_by: mshimoyama creation_date: 2011-11-02T02:45:48Z [Term] id: CMO:0000546 name: plasma free fatty acids level namespace: Clinical_Measurement.ontology is_a: CMO:0000117 ! blood free fatty acids level created_by: mshimoyama creation_date: 2011-11-02T02:46:09Z [Term] id: CMO:0000547 name: serum free fatty acids level namespace: Clinical_Measurement.ontology is_a: CMO:0000117 ! blood free fatty acids level created_by: mshimoyama creation_date: 2011-11-02T02:46:24Z [Term] id: CMO:0000548 name: plasma triglyceride level namespace: Clinical_Measurement.ontology is_a: CMO:0000118 ! blood triglyceride level created_by: mshimoyama creation_date: 2011-11-02T02:46:40Z [Term] id: CMO:0000549 name: blood albumin level namespace: Clinical_Measurement.ontology is_a: CMO:0000028 ! blood protein measurement created_by: mshimoyama creation_date: 2011-11-02T02:47:55Z [Term] id: CMO:0000550 name: serum albumin level namespace: Clinical_Measurement.ontology is_a: CMO:0000549 ! blood albumin level created_by: mshimoyama creation_date: 2011-11-02T02:48:13Z [Term] id: CMO:0000551 name: plasma aldosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000517 ! blood aldosterone level created_by: mshimoyama creation_date: 2011-11-02T02:49:08Z [Term] id: CMO:0000553 name: serum apolipoprotein level namespace: Clinical_Measurement.ontology is_a: CMO:0000518 ! blood apolipoprotein level created_by: mshimoyama creation_date: 2011-11-02T02:52:52Z [Term] id: CMO:0000554 name: plasma cortisol level namespace: Clinical_Measurement.ontology is_a: CMO:0000515 ! blood cortisol level created_by: mshimoyama creation_date: 2011-11-02T02:53:34Z [Term] id: CMO:0000555 name: blood adrenocorticotropic hormone level (ACTH) namespace: Clinical_Measurement.ontology is_a: CMO:0000286 ! blood peptide hormone level created_by: mshimoyama creation_date: 2011-11-02T02:56:12Z [Term] id: CMO:0000556 name: plasma adrenocorticotropic hormone level (ACTH) namespace: Clinical_Measurement.ontology is_a: CMO:0000555 ! blood adrenocorticotropic hormone level (ACTH) created_by: mshimoyama creation_date: 2011-11-02T02:56:48Z [Term] id: CMO:0000557 name: plasma androstenedione level namespace: Clinical_Measurement.ontology is_a: CMO:0000509 ! blood androstenedione level created_by: mshimoyama creation_date: 2011-11-02T02:57:38Z [Term] id: CMO:0000558 name: serum androstenedione level namespace: Clinical_Measurement.ontology is_a: CMO:0000509 ! blood androstenedione level created_by: mshimoyama creation_date: 2011-11-02T02:57:52Z [Term] id: CMO:0000559 name: plasma dehydroepiandrosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000510 ! blood dehydroepiandrosterone level created_by: mshimoyama creation_date: 2011-11-02T02:58:07Z [Term] id: CMO:0000560 name: serum dehydroepiandrosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000510 ! blood dehydroepiandrosterone level created_by: mshimoyama creation_date: 2011-11-02T02:58:27Z [Term] id: CMO:0000561 name: plasma dihydrotestosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000511 ! blood dihydrotestosterone level created_by: mshimoyama creation_date: 2011-11-02T02:58:43Z [Term] id: CMO:0000562 name: serum dihydrotestosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000511 ! blood dihydrotestosterone level created_by: mshimoyama creation_date: 2011-11-02T02:58:59Z [Term] id: CMO:0000563 name: plasma estradiol level namespace: Clinical_Measurement.ontology is_a: CMO:0000513 ! blood estradiol level created_by: mshimoyama creation_date: 2011-11-02T02:59:15Z [Term] id: CMO:0000564 name: serum estradiol level namespace: Clinical_Measurement.ontology is_a: CMO:0000513 ! blood estradiol level created_by: mshimoyama creation_date: 2011-11-02T02:59:27Z [Term] id: CMO:0000565 name: plasma progesterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000514 ! blood progesterone level created_by: mshimoyama creation_date: 2011-11-02T02:59:41Z [Term] id: CMO:0000566 name: serum progesterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000514 ! blood progesterone level created_by: mshimoyama creation_date: 2011-11-02T02:59:56Z [Term] id: CMO:0000567 name: plasma testosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000512 ! blood testosterone level created_by: mshimoyama creation_date: 2011-11-02T03:00:10Z [Term] id: CMO:0000568 name: serum testosterone level namespace: Clinical_Measurement.ontology is_a: CMO:0000512 ! blood testosterone level created_by: mshimoyama creation_date: 2011-11-02T03:00:24Z [Term] id: CMO:0000569 name: serum anion gap namespace: Clinical_Measurement.ontology is_a: CMO:0000067 ! anion gap created_by: mshimoyama creation_date: 2011-11-02T04:07:40Z [Term] id: CMO:0000570 name: plasma ethanol level namespace: Clinical_Measurement.ontology is_a: CMO:0000535 ! blood ethanol level created_by: mshimoyama creation_date: 2011-11-02T04:08:01Z [Term] id: CMO:0000571 name: serum ethanol level namespace: Clinical_Measurement.ontology is_a: CMO:0000535 ! blood ethanol level created_by: mshimoyama creation_date: 2011-11-02T04:08:13Z [Term] id: CMO:0000572 name: plasma angiotensin II level namespace: Clinical_Measurement.ontology is_a: CMO:0000121 ! blood angiotensin II level created_by: mshimoyama creation_date: 2011-11-02T04:08:55Z [Term] id: CMO:0000573 name: serum angiotensin II level namespace: Clinical_Measurement.ontology is_a: CMO:0000121 ! blood angiotensin II level created_by: mshimoyama creation_date: 2011-11-02T04:09:07Z [Term] id: CMO:0000574 name: blood alanine amino transferase (ALT) level namespace: Clinical_Measurement.ontology is_a: CMO:0000064 ! blood enzyme measurements created_by: mshimoyama creation_date: 2011-11-02T04:09:38Z [Term] id: CMO:0000575 name: serum alanine amino transferase (ALT) level namespace: Clinical_Measurement.ontology is_a: CMO:0000574 ! blood alanine amino transferase (ALT) level created_by: mshimoyama creation_date: 2011-11-02T04:10:11Z [Term] id: CMO:0000576 name: blood alkaline phosphatase level namespace: Clinical_Measurement.ontology is_a: CMO:0000064 ! blood enzyme measurements created_by: mshimoyama creation_date: 2011-11-02T04:10:38Z [Term] id: CMO:0000577 name: serum alkaline phosphatase level namespace: Clinical_Measurement.ontology is_a: CMO:0000576 ! blood alkaline phosphatase level created_by: mshimoyama creation_date: 2011-11-02T04:11:05Z [Term] id: CMO:0000578 name: blood angiotensin converting enzyme (ACE) level namespace: Clinical_Measurement.ontology is_a: CMO:0000064 ! blood enzyme measurements created_by: mshimoyama creation_date: 2011-11-02T04:11:31Z [Term] id: CMO:0000579 name: serum angiotensin converting enzyme (ACE) level namespace: Clinical_Measurement.ontology is_a: CMO:0000578 ! blood angiotensin converting enzyme (ACE) level created_by: mshimoyama creation_date: 2011-11-02T04:16:29Z [Term] id: CMO:0000580 name: blood aspartate amino transferase (AST) level namespace: Clinical_Measurement.ontology is_a: CMO:0000064 ! blood enzyme measurements created_by: mshimoyama creation_date: 2011-11-02T04:17:35Z [Term] id: CMO:0000581 name: serum aspartate amino transferase (AST) level namespace: Clinical_Measurement.ontology is_a: CMO:0000580 ! blood aspartate amino transferase (AST) level created_by: mshimoyama creation_date: 2011-11-02T04:18:08Z [Term] id: CMO:0000582 name: plasma adiponectin level namespace: Clinical_Measurement.ontology is_a: CMO:0000485 ! blood adiponectin level created_by: mshimoyama creation_date: 2011-11-02T04:19:16Z [Term] id: CMO:0000583 name: serum adiponectin level namespace: Clinical_Measurement.ontology is_a: CMO:0000485 ! blood adiponectin level created_by: mshimoyama creation_date: 2011-11-02T04:19:29Z [Term] id: CMO:0000584 name: blood carboxyhemoglobin level namespace: Clinical_Measurement.ontology def: "A measure of the amount of carboxyhemoglobin formed by the combination of carbon monoxide and hemoglobin in a specified volume of whole blood." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000035 ! blood measurement created_by: mshimoyama creation_date: 2011-11-02T04:20:28Z [Term] id: CMO:0000585 name: plasma total cholesterol level namespace: Clinical_Measurement.ontology is_a: CMO:0000051 ! blood total cholesterol level created_by: mshimoyama creation_date: 2011-11-02T04:23:29Z [Term] id: CMO:0000586 name: plasma urea nitrogen level namespace: Clinical_Measurement.ontology def: "The level of urea, the chief nitrogenous end product of protein metabolism, measured in a specific volume of plasma, the fluid portion of the blood in which the particulate components are suspended. Urea is formed in the liver from amino acids and from ammonia compounds and is found in urine, blood, and lymph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "BUN level" BROAD [] is_a: CMO:0000049 ! blood urea nitrogen level created_by: mshimoyama creation_date: 2011-11-02T04:23:54Z [Term] id: CMO:0000587 name: serum urea nitrogen level namespace: Clinical_Measurement.ontology def: "The level of urea found in a specific volume of serum, the clear liquid that separates from blood after it has clotted completely, i.e. blood plasma from which fibrogen has been removed. Urea is formed in the liver from amino acids and from ammonia compounds and is found in urine, blood, and lymph." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "BUN level" BROAD [] is_a: CMO:0000049 ! blood urea nitrogen level created_by: mshimoyama creation_date: 2011-11-02T04:24:28Z [Term] id: CMO:0000588 name: plasma hemoglobin level namespace: Clinical_Measurement.ontology is_a: CMO:0000026 ! blood hemoglobin level created_by: mshimoyama creation_date: 2011-11-02T04:24:55Z [Term] id: CMO:0000589 name: plasma carboxyhemoglobin level namespace: Clinical_Measurement.ontology def: "A measure of the amount of carboxyhemoglobin formed by the combination of carbon monoxide and hemoglobin in a specified volume of plasma." [Mosby:Mosby's Manual of Diagnostic and Laboratory Tests\, 4th Ed.] is_a: CMO:0000584 ! blood carboxyhemoglobin level created_by: mshimoyama creation_date: 2011-11-02T04:27:11Z [Term] id: CMO:0000590 name: serum renin activity level namespace: Clinical_Measurement.ontology is_a: CMO:0000115 ! blood renin level created_by: mshimoyama creation_date: 2011-11-02T04:28:37Z [Term] id: CMO:0000591 name: urine protein level namespace: Clinical_Measurement.ontology is_a: CMO:0000770 ! urine protein measurement created_by: mshimoyama creation_date: 2011-11-03T01:45:21Z [Term] id: CMO:0000592 name: urine enzyme level namespace: Clinical_Measurement.ontology is_a: CMO:0000591 ! urine protein level created_by: mshimoyama creation_date: 2011-11-03T01:46:13Z [Term] id: CMO:0000593 name: urine electrolyte level namespace: Clinical_Measurement.ontology is_a: CMO:0000769 ! urine electrolyte measurement created_by: mshimoyama creation_date: 2011-11-03T01:47:49Z [Term] id: CMO:0000594 name: urine steroid level namespace: Clinical_Measurement.ontology is_a: CMO:0000256 ! urine measurement created_by: mshimoyama creation_date: 2011-11-03T01:49:22Z [Term] id: CMO:0000595 name: absolute change in plasma renin activity level namespace: Clinical_Measurement.ontology comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000116 ! plasma renin activity level created_by: mshimoyama creation_date: 2011-11-03T01:54:10Z [Term] id: CMO:0000596 name: CD4 cell count namespace: Clinical_Measurement.ontology alt_id: CMO:0000602 def: "Measurement of the number of lymphocytes expressing the CD4 antigen on their surface in a specified volume of whole blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "CD4(+) cell count" EXACT [] synonym: "CD4+ cell count" EXACT [] is_a: CMO:0000110 ! T lymphocyte count created_by: mshimoyama creation_date: 2011-11-03T02:08:31Z [Term] id: CMO:0000597 name: CD8 cell count namespace: Clinical_Measurement.ontology def: "Measurement of the number of lymphocytes expressing the CD8 antigen on their surface in a specified volume of whole blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "CD8(+) cell count" EXACT [] synonym: "CD8+ cell count" EXACT [] synonym: "cytotoxic T cell count" RELATED [] synonym: "suppressor T cell count" RELATED [] synonym: "Ts/c cell count" RELATED [] is_a: CMO:0000110 ! T lymphocyte count created_by: mshimoyama creation_date: 2011-11-03T02:09:28Z [Term] id: CMO:0000598 name: CD4 cell to CD8 cell ratio namespace: Clinical_Measurement.ontology def: "Calculated measurement of the ratio in whole blood of lymphocytes expressing the CD4 antigen on the surface to lymphocytes expressing the CD8 antigen on the surface." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "CD4/CD8 ratio" EXACT [] is_a: CMO:0000596 ! CD4 cell count is_a: CMO:0000597 ! CD8 cell count created_by: mshimoyama creation_date: 2011-11-03T02:10:53Z [Term] id: CMO:0000599 name: CD25 cell count namespace: Clinical_Measurement.ontology alt_id: CMO:0000601 def: "Measurement of the number of lymphocytes expressing the CD25 antigen on their surface in a specified volume of whole blood." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "CD25(+) cell count" EXACT [] synonym: "CD25+ cell count" EXACT [] is_a: CMO:0000110 ! T lymphocyte count created_by: mshimoyama creation_date: 2011-11-03T02:12:21Z [Term] id: CMO:0000600 name: regulatory T lymphocyte count namespace: Clinical_Measurement.ontology def: "Measurement of the number of T lymphocytes whose function is control or suppression of the T cell mediated immune response. Regulatory T cells are generally distinguished from other classes of lymphocytes on the basis of the presence and/or absence of a number of specific cell surface marker proteins." [PMID:22224762] synonym: "Treg count" RELATED [] is_a: CMO:0000110 ! T lymphocyte count created_by: mshimoyama creation_date: 2011-11-03T02:17:14Z [Term] id: CMO:0000603 name: CD25 cell to CD4 cell ratio as percentage namespace: Clinical_Measurement.ontology def: "The ratio of lymphocytes expressing CD25 on the surface to lymphocytes expressing CD4 on the surface, expressed as a percentage." [RGD:JRS] synonym: "CD25(+) cell to CD4(+) cell ratio as percentage" EXACT [] synonym: "CD25+ cell to CD4+ cell ratio as percentage" EXACT [] is_a: CMO:0000596 ! CD4 cell count is_a: CMO:0000599 ! CD25 cell count created_by: mshimoyama creation_date: 2011-11-03T02:33:14Z [Term] id: CMO:0000604 name: CD25 cell to CD8 cell ratio as percentage namespace: Clinical_Measurement.ontology def: "The ratio of lymphocytes expressing CD25 on the surface to lymphocytes expressing CD8 on the surface, expressed as a percentage." [RGD:JRS] synonym: "CD25(+) cell to CD8(+) cell ratio as percentage" EXACT [] synonym: "CD25+ cell to CD8+ cell ratio as percentage" EXACT [] is_a: CMO:0000597 ! CD8 cell count is_a: CMO:0000599 ! CD25 cell count created_by: mshimoyama creation_date: 2011-11-03T02:33:47Z [Term] id: CMO:0000605 name: left ventricle end-systolic blood pressure namespace: Clinical_Measurement.ontology def: "Measurement of the pressure within the heart left ventricle at the end of systole, the period of contraction of the heart when the blood is forced from the ventricles into the pulmonary artery (right ventricle) and the aorta (left ventricle)." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000007 ! left ventricle systolic blood pressure created_by: mshimoyama creation_date: 2011-11-03T02:34:53Z [Term] id: CMO:0000606 name: left ventricle end-diastolic blood pressure namespace: Clinical_Measurement.ontology def: "The pressure in the heart left ventricle at the end of diastole, the period when the heart is in a state of relaxation and expansion and the ventricles fill with blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000006 ! left ventricle diastolic blood pressure created_by: mshimoyama creation_date: 2011-11-03T02:35:59Z [Term] id: CMO:0000607 name: absolute change in systolic blood pressure namespace: Clinical_Measurement.ontology def: "Calculated measurement of a difference in the maximum arterial blood pressure, that is the pressure at the point of maximal contraction of the heart, between two points in time or two conditions expressed as a number (positive or negative), not as a ratio or percentage relative to another quantity." [Dictionary:Collins Online English Dictionary, Mosby:Mosby's Dental Dictionary\, 2nd Ed] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000746 ! change in systolic blood pressure created_by: mshimoyama creation_date: 2011-11-03T02:36:40Z [Term] id: CMO:0000608 name: absolute change in diastolic blood pressure namespace: Clinical_Measurement.ontology def: "Calculated measurement of a difference in diastolic blood pressure between two points or two conditions expressed as a number (positive or negative), not as a ratio or percentage relative to another quantity. The diastolic pressure is the minimum arterial pressure within the cardiac cycle, usually at the point at which the heart is in a state of relaxation and expansion. This is the time when the ventricles fill with blood." [Berne and Levy:Berne and Levy Physiology\, 6th Ed, Dictionary:Collins Online English Dictionary] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0001016 ! change in diastolic blood pressure created_by: mshimoyama creation_date: 2011-11-03T02:36:56Z [Term] id: CMO:0000609 name: thymus morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the thymus, the lymphoid organ which is the site of the proliferation, differentiation and maturation of T lymphocytes, and of the production of hormones such as thymopoietin and thymosin which control these processes." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000068 ! organ morphological measurement created_by: mshimoyama creation_date: 2011-11-03T02:39:19Z [Term] id: CMO:0000610 name: thymus weight namespace: Clinical_Measurement.ontology def: "The weight of the thymus, the lymphoid organ which is the site of the proliferation, differentiation and maturation of T lymphocytes, and of the production of hormones such as thymopoietin and thymosin which control these processes." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000609 ! thymus morphological measurement created_by: mshimoyama creation_date: 2011-11-03T02:39:31Z [Term] id: CMO:0000611 name: calculated thymus weight namespace: Clinical_Measurement.ontology is_a: CMO:0000610 ! thymus weight created_by: mshimoyama creation_date: 2011-11-03T02:39:42Z [Term] id: CMO:0000612 name: thymus weight to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000611 ! calculated thymus weight created_by: mshimoyama creation_date: 2011-11-03T02:39:55Z [Term] id: CMO:0000613 name: absolute change in thymus weight namespace: Clinical_Measurement.ontology comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000611 ! calculated thymus weight created_by: mshimoyama creation_date: 2011-11-03T02:41:12Z [Term] id: CMO:0000614 name: pituitary gland morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the pituitary gland, the small, oval endocrine gland attached to the base of the vertebrate brain and consisting of an anterior and posterior lobe, the secretions of which control the other endocrine glands and influence growth, metabolism, and maturation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000068 ! organ morphological measurement created_by: mshimoyama creation_date: 2011-11-03T02:43:07Z [Term] id: CMO:0000615 name: pituitary gland weight namespace: Clinical_Measurement.ontology def: "The weight of the pituitary gland, the small, oval endocrine gland attached to the base of the vertebrate brain and consisting of an anterior and posterior lobe, the secretions of which control the other endocrine glands and influence growth, metabolism, and maturation." [Dictionary:The American Heritage Medical Dictionary] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000614 ! pituitary gland morphological measurement created_by: mshimoyama creation_date: 2011-11-03T02:43:20Z [Term] id: CMO:0000616 name: calculated pituitary gland weight namespace: Clinical_Measurement.ontology is_a: CMO:0000615 ! pituitary gland weight created_by: mshimoyama creation_date: 2011-11-03T02:44:01Z [Term] id: CMO:0000617 name: pituitary gland weight to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000616 ! calculated pituitary gland weight created_by: mshimoyama creation_date: 2011-11-03T02:44:16Z [Term] id: CMO:0000618 name: absolute change in pituitary gland weight namespace: Clinical_Measurement.ontology comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000616 ! calculated pituitary gland weight created_by: mshimoyama creation_date: 2011-11-03T02:44:48Z [Term] id: CMO:0000619 name: single adrenal gland weight to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000144 ! calculated adrenal gland weight created_by: mshimoyama creation_date: 2011-11-03T02:45:33Z [Term] id: CMO:0000620 name: both adrenal glands weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000144 ! calculated adrenal gland weight created_by: mshimoyama creation_date: 2011-11-03T02:49:33Z [Term] id: CMO:0000621 name: both adrenal glands weight to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000144 ! calculated adrenal gland weight created_by: mshimoyama creation_date: 2011-11-03T02:49:51Z [Term] id: CMO:0000622 name: single kidney weight to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000160 ! calculated kidney weight created_by: mshimoyama creation_date: 2011-11-03T02:50:38Z [Term] id: CMO:0000623 name: single kidney weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000160 ! calculated kidney weight created_by: mshimoyama creation_date: 2011-11-03T02:50:52Z [Term] id: CMO:0000625 name: urine total protein level namespace: Clinical_Measurement.ontology is_a: CMO:0000591 ! urine protein level created_by: mshimoyama creation_date: 2011-11-03T02:56:20Z [Term] id: CMO:0000626 name: pancreas wet weight namespace: Clinical_Measurement.ontology def: "The weight of the pancreas after removal from the body but without desiccation. The pancreas is the compound endocrine/exocrine gland located behind the stomach in vertebrates which secretes hormones (insulin, glucagon, and somatostatin) into the bloodstream and digestive enzymes and ions such as sodium bicarbonate into the small intestine." [Dictionary:The American Heritage Science Dictionary] is_a: CMO:0000333 ! pancreas weight created_by: mshimoyama creation_date: 2011-11-03T02:58:19Z [Term] id: CMO:0000627 name: pancreas dry weight namespace: Clinical_Measurement.ontology def: "The weight of the pancreas after desiccation. The pancreas is the compound endocrine/exocrine gland located behind the stomach in vertebrates which secretes hormones (insulin, glucagon, and somatostatin) into the bloodstream and digestive enzymes and ions such as sodium bicarbonate into the small intestine." [Dictionary:The American Heritage Science Dictionary] is_a: CMO:0000333 ! pancreas weight created_by: mshimoyama creation_date: 2011-11-03T02:58:31Z [Term] id: CMO:0000628 name: calculated pancreas weight namespace: Clinical_Measurement.ontology is_a: CMO:0000333 ! pancreas weight created_by: mshimoyama creation_date: 2011-11-03T02:58:48Z [Term] id: CMO:0000629 name: pancreas weight as a percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000628 ! calculated pancreas weight created_by: mshimoyama creation_date: 2011-11-03T02:59:00Z [Term] id: CMO:0000630 name: pancreas weight to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000628 ! calculated pancreas weight created_by: mshimoyama creation_date: 2011-11-03T02:59:23Z [Term] id: CMO:0000632 name: single lung wet weight namespace: Clinical_Measurement.ontology alt_id: CMO:0000166 def: "The weight, after removal from the body but without desiccation, of one individual lung, the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed.] synonym: "lung weight, single" EXACT [] is_a: CMO:0000097 ! lung wet weight created_by: mshimoyama creation_date: 2011-11-03T03:00:22Z [Term] id: CMO:0000633 name: liver weight to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000157 ! calculated liver weight created_by: mshimoyama creation_date: 2011-11-03T03:01:14Z [Term] id: CMO:0000634 name: calculated retroperitoneal fat pad weight namespace: Clinical_Measurement.ontology is_a: CMO:0000356 ! retroperitoneal fat pad weight created_by: mshimoyama creation_date: 2011-11-03T03:03:02Z [Term] id: CMO:0000635 name: retroperitoneal fat pad weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000634 ! calculated retroperitoneal fat pad weight created_by: mshimoyama creation_date: 2011-11-03T03:03:19Z [Term] id: CMO:0000636 name: seminal vesicles weight namespace: Clinical_Measurement.ontology is_a: CMO:0000150 ! male reproductive organ morphological measurement created_by: mshimoyama creation_date: 2011-11-03T03:07:40Z [Term] id: CMO:0000637 name: epididymides weight namespace: Clinical_Measurement.ontology is_a: CMO:0000150 ! male reproductive organ morphological measurement created_by: mshimoyama creation_date: 2011-11-03T03:08:00Z [Term] id: CMO:0000638 name: motile sperm percent namespace: Clinical_Measurement.ontology is_a: CMO:0000640 ! sperm measurement created_by: mshimoyama creation_date: 2011-11-03T03:08:51Z [Term] id: CMO:0000640 name: sperm measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2011-11-03T03:09:33Z [Term] id: CMO:0000641 name: litter measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000389 ! reproduction measurement created_by: mshimoyama creation_date: 2011-11-03T03:10:40Z [Term] id: CMO:0000642 name: litter size namespace: Clinical_Measurement.ontology is_a: CMO:0000641 ! litter measurement created_by: mshimoyama creation_date: 2011-11-03T03:11:36Z [Term] id: CMO:0000643 name: percent of live offspring in litter namespace: Clinical_Measurement.ontology is_a: CMO:0000641 ! litter measurement created_by: mshimoyama creation_date: 2011-11-03T03:11:53Z [Term] id: CMO:0000644 name: normal sperm percent namespace: Clinical_Measurement.ontology is_a: CMO:0000640 ! sperm measurement created_by: mshimoyama creation_date: 2011-11-03T03:12:44Z [Term] id: CMO:0000645 name: daily sperm count namespace: Clinical_Measurement.ontology is_a: CMO:0000327 ! sperm count created_by: mshimoyama creation_date: 2011-11-03T03:13:20Z [Term] id: CMO:0000646 name: plasma high density lipoprotein cholesterol level (HDL) namespace: Clinical_Measurement.ontology is_a: CMO:0000052 ! blood high density lipoprotein cholesterol level (HDL) created_by: mshimoyama creation_date: 2011-11-03T03:14:50Z [Term] id: CMO:0000647 name: plasma low density lipoprotein cholesterol level (LDL) namespace: Clinical_Measurement.ontology is_a: CMO:0000053 ! blood low density lipoprotein cholesterol level (LDL) created_by: mshimoyama creation_date: 2011-11-03T03:15:40Z [Term] id: CMO:0000648 name: blood very low density lipoprotein cholesterol level (VLDL) namespace: Clinical_Measurement.ontology is_a: CMO:0000119 ! blood lipoprotein level created_by: mshimoyama creation_date: 2011-11-03T03:16:59Z [Term] id: CMO:0000649 name: plasma very low density lipoprotein cholesterol level (VLDL) namespace: Clinical_Measurement.ontology is_a: CMO:0000648 ! blood very low density lipoprotein cholesterol level (VLDL) created_by: mshimoyama creation_date: 2011-11-03T03:17:35Z [Term] id: CMO:0000650 name: serum very low density lipoprotein cholesterol level (VLDL) namespace: Clinical_Measurement.ontology is_a: CMO:0000648 ! blood very low density lipoprotein cholesterol level (VLDL) created_by: mshimoyama creation_date: 2011-11-03T03:18:00Z [Term] id: CMO:0000651 name: prostate gland morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the prostate gland, the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen." [Gale:Gale Encyclopedia of Medicine] is_a: CMO:0000068 ! organ morphological measurement created_by: mshimoyama creation_date: 2011-11-03T03:22:27Z [Term] id: CMO:0000652 name: prostate gland wet weight namespace: Clinical_Measurement.ontology def: "The weight, after removal from the body but without desiccation, of the prostate gland. The prostate is the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen." [Gale:Gale Encyclopedia of Medicine] is_a: CMO:0000847 ! prostate gland weight created_by: mshimoyama creation_date: 2011-11-03T03:22:45Z [Term] id: CMO:0000653 name: calculated mesenteric fat pad weight namespace: Clinical_Measurement.ontology is_a: CMO:0000355 ! mesenteric fat pad weight created_by: mshimoyama creation_date: 2011-11-03T03:27:53Z [Term] id: CMO:0000654 name: mesenteric fat pad weight as a percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000653 ! calculated mesenteric fat pad weight created_by: mshimoyama creation_date: 2011-11-03T03:28:13Z [Term] id: CMO:0000656 name: heart right ventricle dry weight namespace: Clinical_Measurement.ontology is_a: CMO:0000777 ! heart right ventricle weight created_by: mshimoyama creation_date: 2011-11-04T12:57:25Z [Term] id: CMO:0000657 name: epididymal fat pad measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000224 ! body region fat morphological measurement created_by: mshimoyama creation_date: 2011-11-04T04:12:03Z [Term] id: CMO:0000658 name: epididymal fat pad weight as percentage of body weight namespace: Clinical_Measurement.ontology is_a: CMO:0000657 ! epididymal fat pad measurement created_by: mshimoyama creation_date: 2011-11-04T04:12:55Z [Term] id: CMO:0000659 name: blood globulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000028 ! blood protein measurement created_by: mshimoyama creation_date: 2012-01-09T09:42:26Z [Term] id: CMO:0000660 name: serum globulin level namespace: Clinical_Measurement.ontology is_a: CMO:0000659 ! blood globulin level created_by: mshimoyama creation_date: 2012-01-09T09:42:47Z [Term] id: CMO:0000661 name: total serum protein level namespace: Clinical_Measurement.ontology is_a: CMO:0000028 ! blood protein measurement created_by: mshimoyama creation_date: 2012-01-09T09:43:32Z [Term] id: CMO:0000662 name: heart contraction measurement namespace: Clinical_Measurement.ontology def: "Any measurement of components of the periodic tightening and loosening of the heart muscle." [PGA:Cardiac_protocol] synonym: "heart contractility measurement" RELATED [] is_a: CMO:0000001 ! cardiovascular measurement is_a: CMO:0000670 ! heart measurement created_by: JSmith creation_date: 2012-02-15T11:39:00Z [Term] id: CMO:0000663 name: time to onset of heart contraction namespace: Clinical_Measurement.ontology def: "measure of the time from the relaxation of the heart muscle to the beginning of the tightening of the heart muscle during contraction" [PGA:Cardiac_protocol] is_a: CMO:0000662 ! heart contraction measurement created_by: JSmith creation_date: 2012-02-15T11:42:05Z [Term] id: CMO:0000664 name: time to peak heart contraction namespace: Clinical_Measurement.ontology def: "measurement of the time from the beginning of heart muscle contraction to the maximum contracted state" [PGA:Cardiac_protocol] is_a: CMO:0000662 ! heart contraction measurement created_by: JSmith creation_date: 2012-02-15T11:48:18Z [Term] id: CMO:0000665 name: heart contraction pressure namespace: Clinical_Measurement.ontology def: "pressure exerted by the heart muscle in its maximum contracted state" [PGA:Cardiac_protocol] is_a: CMO:0000662 ! heart contraction measurement created_by: JSmith creation_date: 2012-02-15T11:56:51Z [Term] id: CMO:0000666 name: blood lactate dehydrogenase level namespace: Clinical_Measurement.ontology def: "The amount of lactate dehydrogenase (LDH) in a specified volume of blood. LDH is the enzyme which catalyses the reaction S)-lactate + NAD(+) <=> pyruvate + NADH. Blood LDH level can be used as a marker for tissue damage." [PGA:Cardiac_protocol] synonym: "blood LDH level" EXACT [] is_a: CMO:0000064 ! blood enzyme measurements created_by: JSmith creation_date: 2012-02-15T04:03:31Z [Term] id: CMO:0000667 name: plasma lactate dehydrogenase activity level namespace: Clinical_Measurement.ontology def: "The amount of lactate dehydrogenase (LDH) in a specified volume of plasma. LDH is the enzyme which catalyses the reaction S)-lactate + NAD(+) <=> pyruvate + NADH. Plasma LDH level can be used as a marker for tissue damage." [PGA:Cardiac_protocol] synonym: "plasma LDH activity level" EXACT [] is_a: CMO:0000666 ! blood lactate dehydrogenase level created_by: JSmith creation_date: 2012-02-15T04:22:00Z [Term] id: CMO:0000668 name: serum lactate dehydrogenase activity level namespace: Clinical_Measurement.ontology def: "The amount of lactate dehydrogenase (LDH) in a specified volume of serum. LDH is the enzyme which catalyses the reaction S)-lactate + NAD(+) <=> pyruvate + NADH. Serum LDH level can be used as a marker for tissue damage." [PGA:Cardiac_protocol] synonym: "serum LDH activity level" EXACT [] is_a: CMO:0000666 ! blood lactate dehydrogenase level created_by: JSmith creation_date: 2012-02-15T04:24:22Z [Term] id: CMO:0000669 name: organ measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-02-15T05:00:53Z [Term] id: CMO:0000670 name: heart measurement namespace: Clinical_Measurement.ontology comment: This is not the same term as the original "heart measurement". That term is now "heart morphological measurement". is_a: CMO:0000669 ! organ measurement created_by: JSmith creation_date: 2012-02-15T05:06:19Z [Term] id: CMO:0000671 name: heart effluent measurement namespace: Clinical_Measurement.ontology def: "A measurement made on a fluid flowing out of the heart." [PGA:Cardiac_protocol] is_a: CMO:0000670 ! heart measurement is_a: CMO:0000674 ! organ effluent measurement created_by: JSmith creation_date: 2012-02-15T05:11:39Z [Term] id: CMO:0000672 name: heart effluent volume namespace: Clinical_Measurement.ontology def: "The volume of a fluid flowing out of the heart" [PGA:Cardiac_protocol] is_a: CMO:0000671 ! heart effluent measurement created_by: JSmith creation_date: 2012-02-15T05:14:44Z [Term] id: CMO:0000673 name: timed heart effluent volume namespace: Clinical_Measurement.ontology def: "The volume of a fluid flowing out of the heart during a specified amount of time." [PGA:Cardiac_protocol] is_a: CMO:0000672 ! heart effluent volume created_by: JSmith creation_date: 2012-02-15T05:16:22Z [Term] id: CMO:0000674 name: organ effluent measurement namespace: Clinical_Measurement.ontology def: "Measurement of a fluid flowing out of an organ, especially one which has been removed from the body for study." [PGA:Cardiac_protocol] is_a: CMO:0000669 ! organ measurement created_by: JSmith creation_date: 2012-02-15T05:18:47Z [Term] id: CMO:0000675 name: heart effluent enzyme level namespace: Clinical_Measurement.ontology def: "The amount of an enzyme in a specified volume of fluid flowing out of the heart." [:, PGA:Cardiac_protocol] is_a: CMO:0000671 ! heart effluent measurement created_by: JSmith creation_date: 2012-02-15T05:21:20Z [Term] id: CMO:0000676 name: heart effluent lactate dehydrogenase activity level namespace: Clinical_Measurement.ontology def: "The amount of lactate dehydrogenase activity measured in a specified volume of fluid flowing out of the heart." [:, PGA:Cardiac_protocol] synonym: "heart effluent LDH activity level" EXACT [] is_a: CMO:0000675 ! heart effluent enzyme level created_by: JSmith creation_date: 2012-02-15T05:25:02Z [Term] id: CMO:0000677 name: organ lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion in an organ. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dictionary:The American Heritage Medical Dictionary, RGD:JRS] synonym: "tissue damage measurement" RELATED [] is_a: CMO:0000669 ! organ measurement created_by: JSmith creation_date: 2012-02-15T05:45:18Z [Term] id: CMO:0000678 name: heart lesion measurement namespace: Clinical_Measurement.ontology def: "A measurement of any lesion of the heart. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dictionary:The American Heritage Medical Dictionary, RGD:JRS] is_a: CMO:0000670 ! heart measurement is_a: CMO:0000677 ! organ lesion measurement created_by: JSmith creation_date: 2012-02-15T05:48:03Z [Term] id: CMO:0000679 name: infarction measurement namespace: Clinical_Measurement.ontology def: "Measurement of an area of necrotic tissue resulting from a reduction or obstruction of the oxygen supplied to that tissue." [Dictionary:Dorlands_medical_dictionary] is_a: CMO:0000860 ! organ non-tumorous lesion measurement created_by: JSmith creation_date: 2012-02-15T05:50:09Z [Term] id: CMO:0000680 name: heart infarction measurement namespace: Clinical_Measurement.ontology def: "Measurement of an area of necrotic tissue in the heart resulting from a reduction or obstruction of the oxygen supply." [Dictionary:Dorlands_medical_dictionary] synonym: "myocardial infarction measurement" RELATED [] is_a: CMO:0000679 ! infarction measurement is_a: CMO:0000861 ! heart non-tumorous lesion measurement created_by: JSmith creation_date: 2012-02-15T05:58:36Z [Term] id: CMO:0000681 name: brain infarction measurement namespace: Clinical_Measurement.ontology def: "Measurement of an area of necrotic tissue in the brain resulting from a reduction or obstruction of the oxygen supply to the brain." [Dictionary:Dorlands_medical_dictionary] synonym: "cerebral infarction measurement" RELATED [] is_a: CMO:0000679 ! infarction measurement is_a: CMO:0000912 ! brain non-tumorous lesion measurement created_by: JSmith creation_date: 2012-02-15T06:04:17Z [Term] id: CMO:0000682 name: heart left ventricle infarction measurement namespace: Clinical_Measurement.ontology def: "Measurement of an area of necrotic tissue in the left ventricle of the heart resulting from a reduction or obstruction of the oxygen supply to the heart." [:, PGA:Cardiac_protocol] is_a: CMO:0000680 ! heart infarction measurement created_by: JSmith creation_date: 2012-02-15T06:09:00Z [Term] id: CMO:0000683 name: infarction size namespace: Clinical_Measurement.ontology def: "Measurement of the area, volume or weight of necrotic tissue resulting from a reduction or obstruction of the oxygen supplied to that tissue." [PGA:Cardiac_protocol] is_a: CMO:0000679 ! infarction measurement created_by: JSmith creation_date: 2012-02-15T06:11:07Z [Term] id: CMO:0000684 name: heart infarction size namespace: Clinical_Measurement.ontology def: "Measurement of the area, volume or weight of necrotic tissue in the heart resulting from a reduction or obstruction of the oxygen supply to the heart." [PGA:Cardiac_protocol] is_a: CMO:0000680 ! heart infarction measurement is_a: CMO:0000683 ! infarction size created_by: JSmith creation_date: 2012-02-15T06:14:35Z [Term] id: CMO:0000685 name: heart left ventricle infarction size namespace: Clinical_Measurement.ontology def: "Measurement of the area, volume or weight of necrotic tissue in the heart left ventricle resulting from a reduction or obstruction of the oxygen supply to the heart." [PGA:Cardiac_protocol] is_a: CMO:0000682 ! heart left ventricle infarction measurement is_a: CMO:0000684 ! heart infarction size created_by: JSmith creation_date: 2012-02-15T06:18:51Z [Term] id: CMO:0000686 name: calculated heart left ventricle infarction size namespace: Clinical_Measurement.ontology is_a: CMO:0000685 ! heart left ventricle infarction size created_by: JSmith creation_date: 2012-02-15T06:27:35Z [Term] id: CMO:0000687 name: heart left ventricle infarction size as percentage of total heart left ventricle size namespace: Clinical_Measurement.ontology is_a: CMO:0000686 ! calculated heart left ventricle infarction size created_by: JSmith creation_date: 2012-02-15T06:28:08Z [Term] id: CMO:0000688 name: heart ventricle weight namespace: Clinical_Measurement.ontology is_a: CMO:0000017 ! heart weight is_a: CMO:0000339 ! heart ventricle morphological measurement created_by: JSmith creation_date: 2012-02-15T06:46:40Z [Term] id: CMO:0000689 name: heart infarction weight namespace: Clinical_Measurement.ontology is_a: CMO:0000017 ! heart weight is_a: CMO:0000684 ! heart infarction size is_a: CMO:0000697 ! infarction weight created_by: JSmith creation_date: 2012-02-21T02:50:48Z [Term] id: CMO:0000690 name: heart infarction area namespace: Clinical_Measurement.ontology is_a: CMO:0000684 ! heart infarction size is_a: CMO:0000698 ! infarction area created_by: JSmith creation_date: 2012-02-21T03:02:09Z [Term] id: CMO:0000691 name: heart left ventricle infarction weight namespace: Clinical_Measurement.ontology is_a: CMO:0000685 ! heart left ventricle infarction size is_a: CMO:0000689 ! heart infarction weight created_by: JSmith creation_date: 2012-02-21T03:02:46Z [Term] id: CMO:0000692 name: heart left ventricle infarction area namespace: Clinical_Measurement.ontology is_a: CMO:0000685 ! heart left ventricle infarction size created_by: JSmith creation_date: 2012-02-21T03:03:35Z [Term] id: CMO:0000693 name: calculated heart left ventricle infarction area namespace: Clinical_Measurement.ontology is_a: CMO:0000692 ! heart left ventricle infarction area created_by: JSmith creation_date: 2012-02-21T03:04:15Z [Term] id: CMO:0000694 name: calculated heart left ventricle infarction weight namespace: Clinical_Measurement.ontology is_a: CMO:0000686 ! calculated heart left ventricle infarction size is_a: CMO:0000691 ! heart left ventricle infarction weight is_a: CMO:0000696 ! calculated heart infarction weight created_by: JSmith creation_date: 2012-02-21T03:04:51Z [Term] id: CMO:0000695 name: heart left ventricle infarction weight as percentage of total heart left ventricle weight namespace: Clinical_Measurement.ontology is_a: CMO:0000687 ! heart left ventricle infarction size as percentage of total heart left ventricle size is_a: CMO:0000694 ! calculated heart left ventricle infarction weight created_by: JSmith creation_date: 2012-02-21T03:05:44Z [Term] id: CMO:0000696 name: calculated heart infarction weight namespace: Clinical_Measurement.ontology is_a: CMO:0000689 ! heart infarction weight created_by: JSmith creation_date: 2012-02-21T03:08:57Z [Term] id: CMO:0000697 name: infarction weight namespace: Clinical_Measurement.ontology is_a: CMO:0000683 ! infarction size created_by: JSmith creation_date: 2012-02-21T04:08:26Z [Term] id: CMO:0000698 name: infarction area namespace: Clinical_Measurement.ontology is_a: CMO:0000683 ! infarction size created_by: JSmith creation_date: 2012-02-21T04:09:03Z [Term] id: CMO:0000699 name: absolute change in body temperature namespace: Clinical_Measurement.ontology def: "The difference in body temperature between two different points in time or between two different conditions." [PGA:Respiratory_protocol] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000015 ! body temperature created_by: JSmith creation_date: 2012-03-09T04:05:52Z [Term] id: CMO:0000700 name: blood vessel resistance measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of resistance in a blood vessel to the flow of blood or other fluid through it." [Website:Wikipedia] is_a: CMO:0000077 ! blood vessel measurement created_by: JSmith creation_date: 2012-03-09T05:24:30Z [Term] id: CMO:0000701 name: pulmonary vascular resistance measurement (PVR) namespace: Clinical_Measurement.ontology def: "Resistance to blood flow by blood vessels in the lung" [PGA:Lung_Protocol] is_a: CMO:0000700 ! blood vessel resistance measurement created_by: JSmith creation_date: 2012-03-09T05:53:03Z [Term] id: CMO:0000702 name: calculated pulmonary vascular resistance namespace: Clinical_Measurement.ontology def: "Measurement of vascular resistance in lung blood vessels calculated from other indirect measurements." [JRS:] synonym: "calculated PVR" EXACT [] is_a: CMO:0000701 ! pulmonary vascular resistance measurement (PVR) created_by: JSmith creation_date: 2012-03-09T05:57:02Z [Term] id: CMO:0000703 name: calculated pulmonary vascular resistance normalized to body weight namespace: Clinical_Measurement.ontology synonym: "R_Flow100" NARROW [] is_a: CMO:0000702 ! calculated pulmonary vascular resistance created_by: JSmith creation_date: 2012-03-09T06:00:03Z [Term] id: CMO:0000704 name: blood vessel distensibility measurement namespace: Clinical_Measurement.ontology def: "A measure of a blood vessel's ability to stretch, dilate or expand." [PGA:Lung_Protocol] relationship: part_of CMO:0000700 ! blood vessel resistance measurement created_by: JSmith creation_date: 2012-03-09T06:17:00Z [Term] id: CMO:0000705 name: vascular endothelial cell measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000227 ! cell measurement created_by: JSmith creation_date: 2012-03-09T06:28:12Z [Term] id: CMO:0000706 name: blood vessel endothelium measurement namespace: Clinical_Measurement.ontology def: "measurement made on the endothelial tissue or endothelial cells lining a blood vessel" [JRS:] is_a: CMO:0000077 ! blood vessel measurement created_by: JSmith creation_date: 2012-03-13T12:26:02Z [Term] id: CMO:0000707 name: calculated blood vessel endothelium measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000706 ! blood vessel endothelium measurement created_by: JSmith creation_date: 2012-03-13T12:29:04Z [Term] id: CMO:0000708 name: FAPGG metabolism-surface area product namespace: Clinical_Measurement.ontology is_a: CMO:0000707 ! calculated blood vessel endothelium measurement created_by: JSmith creation_date: 2012-03-13T12:31:07Z [Term] id: CMO:0000709 name: methylene blue metabolism-surface area product without auto-oxidation namespace: Clinical_Measurement.ontology is_a: CMO:0000707 ! calculated blood vessel endothelium measurement created_by: JSmith creation_date: 2012-03-13T01:02:07Z [Term] id: CMO:0000710 name: methylene blue metabolism-surface area product after auto-oxidation namespace: Clinical_Measurement.ontology is_a: CMO:0000707 ! calculated blood vessel endothelium measurement created_by: JSmith creation_date: 2012-03-13T01:03:47Z [Term] id: CMO:0000711 name: methylene blue to FAPGG metabolism-surface area product ratio namespace: Clinical_Measurement.ontology def: "Ratio of the methylene blue metabolism-surface area product without auto-oxidation to the FAPGG metabolism-surface area product." [PGA:Lung_protocol] is_a: CMO:0000707 ! calculated blood vessel endothelium measurement created_by: JSmith creation_date: 2012-03-13T01:12:29Z [Term] id: CMO:0000712 name: airway reactivity measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000094 ! respiratory system measurement created_by: JSmith creation_date: 2012-03-13T02:08:24Z [Term] id: CMO:0000713 name: methacholine median effective dose (ED50) namespace: Clinical_Measurement.ontology def: "The dose of Methacholine which produces half of the maximum response, for example which decreases the pulmonary conductance to one half its pretreatment value." [PGA:Lung_protocol] is_a: CMO:0000712 ! airway reactivity measurement is_a: CMO:0000738 ! methacholine response/sensitivity measurement created_by: JSmith creation_date: 2012-03-13T02:15:00Z [Term] id: CMO:0000714 name: fractional change in blood vessel diameter per unit change in intravascular pressure namespace: Clinical_Measurement.ontology synonym: "alpha" RELATED [] synonym: "fractional change in vessel distensibility contributing to the pressure-flow relationship" RELATED [] is_a: CMO:0000715 ! calculated blood vessel distensibility measurement created_by: JSmith creation_date: 2012-03-13T03:24:11Z [Term] id: CMO:0000715 name: calculated blood vessel distensibility measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000704 ! blood vessel distensibility measurement created_by: JSmith creation_date: 2012-03-13T03:37:25Z [Term] id: CMO:0000716 name: blood vessel contractile force measurement namespace: Clinical_Measurement.ontology def: "The force generated by a blood vessel contracting or constricting." [PGA:Vascular_protocol] is_a: CMO:0000218 ! blood vessel constriction measurement created_by: JSmith creation_date: 2012-03-13T04:15:39Z [Term] id: CMO:0000717 name: blood vessel maximum contractile force namespace: Clinical_Measurement.ontology is_a: CMO:0000716 ! blood vessel contractile force measurement created_by: JSmith creation_date: 2012-03-13T04:46:14Z [Term] id: CMO:0000718 name: maximum contractile force per wet weight of vessel namespace: Clinical_Measurement.ontology is_a: CMO:0000717 ! blood vessel maximum contractile force created_by: JSmith creation_date: 2012-03-13T04:47:52Z [Term] id: CMO:0000719 name: chemical response/sensitivity measurement namespace: Clinical_Measurement.ontology def: "measurement of an organism's, organ's, tissue's or cell's response or sensitivity to a drug or other chemical" [JRS:] is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-03-14T04:09:34Z [Term] id: CMO:0000720 name: calculated blood vessel contractile force measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000716 ! blood vessel contractile force measurement created_by: JSmith creation_date: 2012-03-14T04:16:11Z [Term] id: CMO:0000721 name: phenylephrine half maximal effective concentration (EC50) namespace: Clinical_Measurement.ontology is_a: CMO:0000720 ! calculated blood vessel contractile force measurement is_a: CMO:0000739 ! phenylephrine response/sensitivity measurement created_by: JSmith creation_date: 2012-03-14T04:17:28Z [Term] id: CMO:0000722 name: phenylephrine Log half maximal effective concentration (Log EC50) namespace: Clinical_Measurement.ontology is_a: CMO:0000720 ! calculated blood vessel contractile force measurement is_a: CMO:0000739 ! phenylephrine response/sensitivity measurement created_by: JSmith creation_date: 2012-03-14T04:17:54Z [Term] id: CMO:0000723 name: calculated blood vessel dilation force reduction measurement namespace: Clinical_Measurement.ontology def: "Measurement of the reduction in force during dilation of a blood vessel via calculations from direct measurements rather than expressing the direct measurements themselves." [JRS:] is_a: CMO:0000729 ! blood vessel dilation force reduction measurement created_by: JSmith creation_date: 2012-03-14T04:21:12Z [Term] id: CMO:0000724 name: acetylcholine half maximal effective concentration (EC50) namespace: Clinical_Measurement.ontology is_a: CMO:0000723 ! calculated blood vessel dilation force reduction measurement is_a: CMO:0000737 ! acetylcholine response/sensitivity measurement created_by: JSmith creation_date: 2012-03-14T04:23:57Z [Term] id: CMO:0000725 name: acetylcholine Log half maximal effective concentration (Log EC50) namespace: Clinical_Measurement.ontology is_a: CMO:0000723 ! calculated blood vessel dilation force reduction measurement is_a: CMO:0000737 ! acetylcholine response/sensitivity measurement created_by: JSmith creation_date: 2012-03-14T04:24:16Z [Term] id: CMO:0000726 name: sodium nitroprusside half maximal effective concentration (EC50) namespace: Clinical_Measurement.ontology is_a: CMO:0000723 ! calculated blood vessel dilation force reduction measurement is_a: CMO:0000740 ! sodium nitroprusside response/sensitivity measurement created_by: JSmith creation_date: 2012-03-14T04:24:44Z [Term] id: CMO:0000727 name: sodium nitroprusside Log half maximal effective concentration (Log EC50) namespace: Clinical_Measurement.ontology is_a: CMO:0000723 ! calculated blood vessel dilation force reduction measurement is_a: CMO:0000740 ! sodium nitroprusside response/sensitivity measurement created_by: JSmith creation_date: 2012-03-14T04:25:16Z [Term] id: CMO:0000728 name: maximum contractile force per wet weight of aorta namespace: Clinical_Measurement.ontology is_a: CMO:0000718 ! maximum contractile force per wet weight of vessel created_by: JSmith creation_date: 2012-03-15T11:42:31Z [Term] id: CMO:0000729 name: blood vessel dilation force reduction measurement namespace: Clinical_Measurement.ontology def: "measurement of the reduction in force during blood vessel dilation" [JRS:] is_a: CMO:0000215 ! blood vessel dilation measurement created_by: JSmith creation_date: 2012-03-15T11:48:29Z [Term] id: CMO:0000730 name: blood vessel dilation expressed as percent of force at maximum constriction namespace: Clinical_Measurement.ontology is_a: CMO:0000723 ! calculated blood vessel dilation force reduction measurement created_by: JSmith creation_date: 2012-03-15T11:53:37Z [Term] id: CMO:0000731 name: acetylcholine-induced blood vessel dilation expressed as percent of force at maximum constriction namespace: Clinical_Measurement.ontology is_a: CMO:0000730 ! blood vessel dilation expressed as percent of force at maximum constriction is_a: CMO:0000737 ! acetylcholine response/sensitivity measurement created_by: JSmith creation_date: 2012-03-15T11:55:20Z [Term] id: CMO:0000732 name: sodium nitroprusside-induced blood vessel dilation expressed as percent of force at maximum constriction namespace: Clinical_Measurement.ontology is_a: CMO:0000730 ! blood vessel dilation expressed as percent of force at maximum constriction is_a: CMO:0000740 ! sodium nitroprusside response/sensitivity measurement created_by: JSmith creation_date: 2012-03-15T11:59:59Z [Term] id: CMO:0000733 name: hypoxia-induced blood vessel dilation expressed as percent of force at maximum constriction namespace: Clinical_Measurement.ontology is_a: CMO:0000730 ! blood vessel dilation expressed as percent of force at maximum constriction created_by: JSmith creation_date: 2012-03-15T12:00:51Z [Term] id: CMO:0000734 name: slope measurement of phenylephrine-induced contraction namespace: Clinical_Measurement.ontology is_a: CMO:0000720 ! calculated blood vessel contractile force measurement created_by: JSmith creation_date: 2012-03-15T12:03:40Z [Term] id: CMO:0000735 name: fast-slope measurement of phenylephrine-induced contraction namespace: Clinical_Measurement.ontology is_a: CMO:0000734 ! slope measurement of phenylephrine-induced contraction created_by: JSmith creation_date: 2012-03-15T12:05:49Z [Term] id: CMO:0000736 name: slow-slope measurement of phenylephrine-induced contraction namespace: Clinical_Measurement.ontology is_a: CMO:0000734 ! slope measurement of phenylephrine-induced contraction created_by: JSmith creation_date: 2012-03-15T12:06:21Z [Term] id: CMO:0000737 name: acetylcholine response/sensitivity measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000719 ! chemical response/sensitivity measurement created_by: JSmith creation_date: 2012-03-15T12:11:24Z [Term] id: CMO:0000738 name: methacholine response/sensitivity measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000719 ! chemical response/sensitivity measurement created_by: JSmith creation_date: 2012-03-15T12:12:19Z [Term] id: CMO:0000739 name: phenylephrine response/sensitivity measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000719 ! chemical response/sensitivity measurement created_by: JSmith creation_date: 2012-03-15T12:12:47Z [Term] id: CMO:0000740 name: sodium nitroprusside response/sensitivity measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000719 ! chemical response/sensitivity measurement created_by: JSmith creation_date: 2012-03-15T12:13:21Z [Term] id: CMO:0000741 name: water intake rate namespace: Clinical_Measurement.ontology is_a: CMO:0000455 ! drink intake rate created_by: JSmith creation_date: 2012-03-15T08:07:36Z [Term] id: CMO:0000742 name: percent change in heart rate namespace: Clinical_Measurement.ontology is_a: CMO:0000002 ! heart rate created_by: JSmith creation_date: 2012-03-20T04:21:00Z [Term] id: CMO:0000743 name: change in calculated blood pressure namespace: Clinical_Measurement.ontology def: "Calculation of a difference between representations of blood pressure in a treated vs untreated state or over time, after the original values have been normalized or adjusted by a mathematical process or computation. Blood pressure is the pressure, or force per area, exerted by circulating blood against the walls of the blood vessels. The pressure is dependent on the energy of the heart action, elasticity of the vessel walls and volume and viscosity of the blood." [Berne and Levy:Berne and Levy Physiology\, 6th Ed, Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed] is_a: CMO:0000008 ! calculated blood pressure created_by: JSmith creation_date: 2012-03-20T04:31:30Z [Term] id: CMO:0000744 name: change in developed blood pressure namespace: Clinical_Measurement.ontology def: "A calculated measurement of the difference in developed blood pressure between a treated state and a control state. Developed pressure is systolic minus diastolic pressure when measured in an isolated organ or vessel under conditions where perfusion pressure or flow can be controlled." [PGA:Cardiac_protocol] is_a: CMO:0000010 ! developed blood pressure is_a: CMO:0000743 ! change in calculated blood pressure created_by: JSmith creation_date: 2012-03-20T04:31:52Z [Term] id: CMO:0000745 name: percent change in developed blood pressure namespace: Clinical_Measurement.ontology def: "A calculated measurement of the difference in developed blood pressure between a treated state and a control state, expressed as a percentage. Developed pressure is systolic minus diastolic pressure when measured in an isolated organ or vessel under conditions where perfusion pressure or flow can be controlled." [PGA:Cardiac_protocol] is_a: CMO:0000744 ! change in developed blood pressure created_by: JSmith creation_date: 2012-03-20T04:32:19Z [Term] id: CMO:0000746 name: change in systolic blood pressure namespace: Clinical_Measurement.ontology def: "Calculated measurement of a difference in the maximum arterial blood pressure, that is the pressure at the point of maximal contraction of the heart, between two points in time or two conditions." [Mosby:Mosby's Dental Dictionary\, 2nd Ed, RGD:MS] is_a: CMO:0000004 ! systolic blood pressure is_a: CMO:0000008 ! calculated blood pressure created_by: JSmith creation_date: 2012-03-20T04:34:31Z [Term] id: CMO:0000747 name: percent change in systolic blood pressure namespace: Clinical_Measurement.ontology def: "The relative difference in the maximum arterial blood pressure, that is the pressure at the point of maximal contraction of the heart, between two points in time or two conditions expressed as a percentage." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000746 ! change in systolic blood pressure created_by: JSmith creation_date: 2012-03-20T04:35:00Z [Term] id: CMO:0000748 name: change in arterial blood flow rate namespace: Clinical_Measurement.ontology is_a: CMO:0000198 ! arterial blood flow rate created_by: JSmith creation_date: 2012-03-20T04:37:30Z [Term] id: CMO:0000749 name: percent change in arterial blood flow rate namespace: Clinical_Measurement.ontology is_a: CMO:0000748 ! change in arterial blood flow rate created_by: JSmith creation_date: 2012-03-20T04:38:02Z [Term] id: CMO:0000750 name: absolute change in arterial blood flow rate namespace: Clinical_Measurement.ontology comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000748 ! change in arterial blood flow rate created_by: JSmith creation_date: 2012-03-20T04:38:35Z [Term] id: CMO:0000751 name: percent change in left ventricle developed pressure namespace: Clinical_Measurement.ontology def: "A calculated measurement of the difference in developed pressure measured in the heart left ventricle between a treated state and a control state, expressed as a percentage. Developed pressure is systolic minus diastolic pressure when measured in an isolated organ or vessel under conditions where perfusion pressure or flow can be controlled." [PGA:Cardiac_protocol] is_a: CMO:0000745 ! percent change in developed blood pressure is_a: CMO:0000752 ! change in left ventricle developed pressure created_by: JSmith creation_date: 2012-03-21T01:08:08Z [Term] id: CMO:0000752 name: change in left ventricle developed pressure namespace: Clinical_Measurement.ontology def: "A calculated measurement of the difference in developed pressure measured in the heart left ventricle between a treated state and a control state. Developed pressure is systolic minus diastolic pressure when measured in an isolated organ or vessel under conditions where perfusion pressure or flow can be controlled." [PGA:Cardiac_protocol] is_a: CMO:0000018 ! left ventricle developed pressure is_a: CMO:0000744 ! change in developed blood pressure created_by: JSmith creation_date: 2012-03-21T01:09:30Z [Term] id: CMO:0000753 name: change in left ventricle systolic blood pressure namespace: Clinical_Measurement.ontology def: "Difference in the pressure within the heart left ventricle at the point of maximal contraction, when the blood is forced from the left ventricle into the aorta, between two points in time or two conditions." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000007 ! left ventricle systolic blood pressure is_a: CMO:0000746 ! change in systolic blood pressure created_by: JSmith creation_date: 2012-03-21T01:13:41Z [Term] id: CMO:0000754 name: percent change in left ventricle systolic blood pressure namespace: Clinical_Measurement.ontology def: "The relative difference in the pressure within the heart left ventricle at the point of maximal contraction, when the blood is forced from the left ventricle into the aorta, between two points in time or two conditions expressed as a percentage." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000747 ! percent change in systolic blood pressure is_a: CMO:0000753 ! change in left ventricle systolic blood pressure created_by: JSmith creation_date: 2012-03-21T01:14:31Z [Term] id: CMO:0000755 name: urine component excretion rate measurement namespace: Clinical_Measurement.ontology def: "the amount of a particular constituent of urine, such as an ion or salt, excreted into the urine per unit time" [RGD:JRS] is_a: CMO:0000256 ! urine measurement created_by: JSmith creation_date: 2012-03-28T09:35:07Z [Term] id: CMO:0000756 name: urine total protein excretion rate namespace: Clinical_Measurement.ontology is_a: CMO:0000759 ! urine protein excretion rate created_by: JSmith creation_date: 2012-03-28T09:39:03Z [Term] id: CMO:0000757 name: urine albumin excretion rate namespace: Clinical_Measurement.ontology def: "The amount of albumin excreted into the urine within a specified period of time. If the level of albumin in the urine is above normal but not high enough to be detectable with routine protein testing it is referred to as \"microalbumin\"." [Mosby:Mosbys Manual of Diagnostic and Laboratory Tests 4th Ed] synonym: "urine microalbumin excretion rate" RELATED [] is_a: CMO:0000759 ! urine protein excretion rate created_by: JSmith creation_date: 2012-03-28T09:39:31Z [Term] id: CMO:0000758 name: urine electrolyte excretion rate namespace: Clinical_Measurement.ontology def: "The amount of an electrolyte, that is, a substance that dissociates into ions, excreted in the urine per unit time" [Dorland:Dorland's Illustrated Medical Dictionary\\\, 31st Ed.] is_a: CMO:0000755 ! urine component excretion rate measurement is_a: CMO:0000769 ! urine electrolyte measurement created_by: JSmith creation_date: 2012-03-28T09:40:42Z [Term] id: CMO:0000759 name: urine protein excretion rate namespace: Clinical_Measurement.ontology def: "The amount of protein excreted in urine per unit time" [RGD:JRS] is_a: CMO:0000755 ! urine component excretion rate measurement is_a: CMO:0000770 ! urine protein measurement created_by: JSmith creation_date: 2012-03-28T09:41:01Z [Term] id: CMO:0000760 name: urine sodium excretion rate namespace: Clinical_Measurement.ontology is_a: CMO:0000758 ! urine electrolyte excretion rate created_by: JSmith creation_date: 2012-03-28T09:43:36Z [Term] id: CMO:0000761 name: urine potassium excretion rate namespace: Clinical_Measurement.ontology is_a: CMO:0000758 ! urine electrolyte excretion rate created_by: JSmith creation_date: 2012-03-28T09:44:01Z [Term] id: CMO:0000762 name: urine chloride excretion rate namespace: Clinical_Measurement.ontology is_a: CMO:0000758 ! urine electrolyte excretion rate created_by: JSmith creation_date: 2012-03-28T09:44:27Z [Term] id: CMO:0000763 name: urine calcium excretion rate namespace: Clinical_Measurement.ontology is_a: CMO:0000758 ! urine electrolyte excretion rate created_by: JSmith creation_date: 2012-03-28T09:44:54Z [Term] id: CMO:0000764 name: urine creatinine excretion rate namespace: Clinical_Measurement.ontology def: "The amount of creatinine excreted in the urine per unit time" [RGD:JRS] is_a: CMO:0000755 ! urine component excretion rate measurement is_a: CMO:0000766 ! urine creatinine measurement created_by: JSmith creation_date: 2012-03-28T10:03:34Z [Term] id: CMO:0000765 name: creatinine clearance namespace: Clinical_Measurement.ontology def: "The clearance rate of creatinine, that is, the volume of plasma that is cleared of creatinine by the kidneys per unit time. Creatinine clearance is calculated using the level of creatinine in a sample of urine, usually one collected over a period of 24 hours, the corresponding plasma creatinine level, and the volume of urine excreted. It is used as an approximation of the glomerular filtration rate (GFR)." [CMDT:Medical Diagnosis & Treatment] is_a: CMO:0000766 ! urine creatinine measurement is_a: CMO:0000768 ! plasma creatinine measurement created_by: JSmith creation_date: 2012-03-28T10:49:24Z [Term] id: CMO:0000766 name: urine creatinine measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000256 ! urine measurement created_by: JSmith creation_date: 2012-03-28T11:08:03Z [Term] id: CMO:0000767 name: blood creatinine measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000023 ! blood chemistry measurement created_by: JSmith creation_date: 2012-03-28T11:15:22Z [Term] id: CMO:0000768 name: plasma creatinine measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000767 ! blood creatinine measurement created_by: JSmith creation_date: 2012-03-28T11:16:24Z [Term] id: CMO:0000769 name: urine electrolyte measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000256 ! urine measurement created_by: JSmith creation_date: 2012-03-28T11:19:32Z [Term] id: CMO:0000770 name: urine protein measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000256 ! urine measurement created_by: JSmith creation_date: 2012-03-28T11:21:06Z [Term] id: CMO:0000771 name: drink intake measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000426 ! consumption measurement created_by: JSmith creation_date: 2012-03-28T01:37:12Z [Term] id: CMO:0000772 name: food intake measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000426 ! consumption measurement created_by: JSmith creation_date: 2012-03-28T01:37:36Z [Term] id: CMO:0000773 name: drink intake volume namespace: Clinical_Measurement.ontology is_a: CMO:0000771 ! drink intake measurement created_by: JSmith creation_date: 2012-03-28T01:39:39Z [Term] id: CMO:0000774 name: water intake volume namespace: Clinical_Measurement.ontology is_a: CMO:0000773 ! drink intake volume created_by: JSmith creation_date: 2012-03-28T01:40:47Z [Term] id: CMO:0000775 name: heart effluent lactate dehydrogenase activity level normalized to heart weight namespace: Clinical_Measurement.ontology def: "activity level of LDH in effluent expressed relative to the weight of the heart; calculated as LDH activity divided by heart wet weight" [JRS:] is_a: CMO:0000676 ! heart effluent lactate dehydrogenase activity level created_by: JSmith creation_date: 2012-03-30T07:52:39Z [Term] id: CMO:0000776 name: heart left ventricle weight namespace: Clinical_Measurement.ontology is_a: CMO:0000688 ! heart ventricle weight is_a: CMO:0000951 ! heart left ventricle morphological measurement created_by: JSmith creation_date: 2012-06-07T11:37:18Z [Term] id: CMO:0000777 name: heart right ventricle weight namespace: Clinical_Measurement.ontology is_a: CMO:0000688 ! heart ventricle weight is_a: CMO:0000952 ! heart right ventricle morphological measurement created_by: JSmith creation_date: 2012-06-07T11:38:49Z [Term] id: CMO:0000778 name: mean pulmonary arterial blood pressure namespace: Clinical_Measurement.ontology def: "The average blood pressure within the pulmonary artery over a specified period of time, or technically over a complete cycle of one heartbeat." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "mean pulmonary artery (PA) pressure" RELATED [] is_a: CMO:0000009 ! mean arterial blood pressure is_a: CMO:0000782 ! pulmonary arterial blood pressure measurement created_by: JSmith creation_date: 2012-06-07T12:01:20Z [Term] id: CMO:0000779 name: blood leptin level namespace: Clinical_Measurement.ontology is_a: CMO:0000286 ! blood peptide hormone level created_by: JSmith creation_date: 2012-06-07T12:07:03Z [Term] id: CMO:0000780 name: serum leptin level namespace: Clinical_Measurement.ontology is_a: CMO:0000779 ! blood leptin level created_by: JSmith creation_date: 2012-06-07T12:07:33Z [Term] id: CMO:0000781 name: plasma leptin level namespace: Clinical_Measurement.ontology is_a: CMO:0000779 ! blood leptin level created_by: JSmith creation_date: 2012-06-07T12:09:57Z [Term] id: CMO:0000782 name: pulmonary arterial blood pressure measurement namespace: Clinical_Measurement.ontology def: "Measurement of blood pressure in the pulmonary artery." [RGD:JRS] synonym: "pulmonary artery (PA) blood pressure measurement" RELATED [] synonym: "pulmonary artery pressure" RELATED [] xref: XX: is_a: CMO:0000003 ! blood pressure measurement created_by: JSmith creation_date: 2012-06-07T02:24:23Z [Term] id: CMO:0000783 name: endocrine/exocrine system measurement namespace: Clinical_Measurement.ontology def: "Measurements involving organs or structures which release their products into the blood or lymph (endocrine) or through a duct opening on an internal or external surface of the body (exocrine)." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-06-13T01:56:27Z [Term] id: CMO:0000784 name: exocrine gland measurement namespace: Clinical_Measurement.ontology def: "Measurements involving an exocrine gland or its product(s). An exocrine gland is one which discharges its secretions through a duct opening on an internal or external surface of the body." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000783 ! endocrine/exocrine system measurement created_by: JSmith creation_date: 2012-06-13T02:06:49Z [Term] id: CMO:0000785 name: exocrine gland fluid/secretion measurement namespace: Clinical_Measurement.ontology def: "Measurement involving a fluid or other secretion produced by an exocrine gland, that is, one which discharges its secretions through a duct opening on an internal or external surface of the body." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed.] is_a: CMO:0000784 ! exocrine gland measurement created_by: JSmith creation_date: 2012-06-13T02:14:03Z [Term] id: CMO:0000786 name: mammary gland measurement namespace: Clinical_Measurement.ontology def: "Measurement involving the mammary gland, the milk-producing gland in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat." [Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0000784 ! exocrine gland measurement created_by: JSmith creation_date: 2012-06-13T02:16:55Z [Term] id: CMO:0000787 name: milk measurement namespace: Clinical_Measurement.ontology def: "Measurement of the constituents or properties of milk, a colloidal emulsion of water, protein, fats and carbohydrates produced by the mammary glands of female mammals." [PT:, RGD:JRS] is_a: CMO:0000785 ! exocrine gland fluid/secretion measurement is_a: CMO:0000786 ! mammary gland measurement created_by: JSmith creation_date: 2012-06-13T02:36:03Z [Term] id: CMO:0000788 name: milk fat measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount or composition of fat in milk" [RGD:JRS] is_a: CMO:0000787 ! milk measurement created_by: JSmith creation_date: 2012-06-13T02:53:18Z [Term] id: CMO:0000789 name: milk protein measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount or composition of protein in milk." [RGD:JRS] is_a: CMO:0000787 ! milk measurement created_by: JSmith creation_date: 2012-06-13T02:55:20Z [Term] id: CMO:0000790 name: milk solids content namespace: Clinical_Measurement.ontology def: "The amount of fat, protein, lactose, and minerals in milk." [RGD:\:JRS, Website:http\://extension.missouri.edu/p/G3110] is_a: CMO:0000787 ! milk measurement created_by: JSmith creation_date: 2012-06-13T02:56:57Z [Term] id: CMO:0000791 name: milk somatic cell measurement namespace: Clinical_Measurement.ontology def: "Measurement of the number or composition of somatic cells in milk." [RGD:JRS] is_a: CMO:0000787 ! milk measurement created_by: JSmith creation_date: 2012-06-13T02:58:57Z [Term] id: CMO:0000792 name: milk somatic cell count namespace: Clinical_Measurement.ontology def: "The number of somatic cells (leukocytes and epithelial cells) present in milk; a high count is an indicator of mastitis." [PT:1000072] is_a: CMO:0000791 ! milk somatic cell measurement created_by: JSmith creation_date: 2012-06-13T03:00:28Z [Term] id: CMO:0000793 name: milk somatic cell score namespace: Clinical_Measurement.ontology def: "Transformation of the number of somatic cells (leukocytes and epithelial cells) present in milk (ln(SCC/100,000)+3)." [PT:1000072] is_a: CMO:0000791 ! milk somatic cell measurement created_by: JSmith creation_date: 2012-06-13T03:01:45Z [Term] id: CMO:0000794 name: milk protein content namespace: Clinical_Measurement.ontology def: "The amount in milk of macromolecules consisting of long sequences of amino acids in peptide linkage." [PT:1000165, Stedman:Stedman's Medical Dictionary] is_a: CMO:0000789 ! milk protein measurement created_by: JSmith creation_date: 2012-06-13T03:07:39Z [Term] id: CMO:0000795 name: milk protein percentage namespace: Clinical_Measurement.ontology def: "The amount in milk of macromolecules consisting of long sequences of amino acids in peptide linkage, expressed as a percentage of total milk amount." [PT:1000165, Stedman:Stedman's Medical Dictionary] is_a: CMO:0000797 ! calculated milk protein content measurement created_by: JSmith creation_date: 2012-06-13T03:13:36Z [Term] id: CMO:0000796 name: milk protein yield namespace: Clinical_Measurement.ontology def: "The total amount of milk protein produced over a specific period of time." [PT:0010028] is_a: CMO:0000789 ! milk protein measurement created_by: JSmith creation_date: 2012-06-13T03:15:40Z [Term] id: CMO:0000797 name: calculated milk protein content measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000794 ! milk protein content created_by: JSmith creation_date: 2012-06-15T01:06:23Z [Term] id: CMO:0000798 name: milk casein content namespace: Clinical_Measurement.ontology def: "Measurement of the amount of casein, the predominant phosphoprotein in milk." [PT:0010280] is_a: CMO:0000794 ! milk protein content created_by: JSmith creation_date: 2012-06-15T01:09:27Z [Term] id: CMO:0000799 name: calculated milk casein content namespace: Clinical_Measurement.ontology def: "The measured amount of casein, the predominant phosphoprotein in milk expressed as a normalized or otherwise mathematically adjusted value." [RGD:JRS] is_a: CMO:0000797 ! calculated milk protein content measurement is_a: CMO:0000798 ! milk casein content created_by: JSmith creation_date: 2012-06-15T01:11:31Z [Term] id: CMO:0000800 name: milk casein index namespace: Clinical_Measurement.ontology def: "The amount of casein, the predominant phosphoprotein in milk expressed as [(alpha-S1 CN % + alpha-S2 CN % + beta-CN % + kappa-CN %)/(sum of all casein and whey protein %)] x 100." [PMID:21605784] is_a: CMO:0000799 ! calculated milk casein content created_by: JSmith creation_date: 2012-06-15T01:20:39Z [Term] id: CMO:0000801 name: milk casein percentage namespace: Clinical_Measurement.ontology def: "The amount of casein, the predominant phosphoprotein in milk, expressed as a percentage of total milk protein." [PT:0010280] is_a: CMO:0000795 ! milk protein percentage is_a: CMO:0000799 ! calculated milk casein content created_by: JSmith creation_date: 2012-06-15T01:22:13Z [Term] id: CMO:0000802 name: milk alpha-casein content namespace: Clinical_Measurement.ontology def: "The amount in milk of the alpha fraction of the casein phosphoprotein." [PT:0000002] is_a: CMO:0000798 ! milk casein content created_by: JSmith creation_date: 2012-06-15T05:08:22Z [Term] id: CMO:0000803 name: milk beta-casein content namespace: Clinical_Measurement.ontology def: "The amount in milk of the beta fraction of the casein phosphoprotein." [PT:0010284] is_a: CMO:0000798 ! milk casein content created_by: JSmith creation_date: 2012-06-15T05:09:53Z [Term] id: CMO:0000804 name: milk kappa-casein content namespace: Clinical_Measurement.ontology def: "The amount in milk of kappa-casein, a casein which plays a crucial role in micellar structure; its concentration determines micellar size." [PT:0010283] is_a: CMO:0000798 ! milk casein content created_by: JSmith creation_date: 2012-06-15T05:11:37Z [Term] id: CMO:0000805 name: milk alpha-casein percentage namespace: Clinical_Measurement.ontology def: "The amount in milk of the alpha fraction of the casein phosphoprotein, expressed as a percentage of total casein content or total milk protein." [PT:0000002] is_a: CMO:0000801 ! milk casein percentage created_by: JSmith creation_date: 2012-06-15T05:13:05Z [Term] id: CMO:0000806 name: milk beta-casein percentage namespace: Clinical_Measurement.ontology def: "The amount in milk of the beta fraction of the casein phosphoprotein, expressed as a percentage of total casein or total milk protein." [PT:0010284] is_a: CMO:0000801 ! milk casein percentage created_by: JSmith creation_date: 2012-06-15T05:14:12Z [Term] id: CMO:0000807 name: milk kappa-casein percentage namespace: Clinical_Measurement.ontology def: "The amount in milk of kappa-casein, a casein which plays a crucial role in micellar structure, expressed as a percentage of total milk protein." [PT:0010283] is_a: CMO:0000801 ! milk casein percentage created_by: JSmith creation_date: 2012-06-15T05:16:07Z [Term] id: CMO:0000808 name: milk whey protein content namespace: Clinical_Measurement.ontology def: "The combined alpha-lactalbumin and beta-lactoglobulin content in milk." [PMID:20655450] is_a: CMO:0000794 ! milk protein content created_by: JSmith creation_date: 2012-06-15T05:25:14Z [Term] id: CMO:0000809 name: milk alpha-lactalbumin content namespace: Clinical_Measurement.ontology def: "The amount in milk of alpha-lactalbumin, an enzyme that catalyzes lactose synthesis in mammary epithelial cells." [PT:0010003] is_a: CMO:0000808 ! milk whey protein content created_by: JSmith creation_date: 2012-06-15T05:26:47Z [Term] id: CMO:0000810 name: milk beta-lactoglobulin content namespace: Clinical_Measurement.ontology def: "The amount in milk of beta-lactoglobulin, which may bind retinol; this milk constituent is allergenic." [PT:0010266] is_a: CMO:0000808 ! milk whey protein content created_by: JSmith creation_date: 2012-06-15T05:28:17Z [Term] id: CMO:0000811 name: calculated milk whey protein content namespace: Clinical_Measurement.ontology def: "the combined alpha-lactalbumin and beta-lactoglobulin content in milk, expressed as a value which has been normalized or otherwise mathmatically adjusted." [PMID:20655450, RGD:JRS] is_a: CMO:0000797 ! calculated milk protein content measurement is_a: CMO:0000808 ! milk whey protein content created_by: JSmith creation_date: 2012-06-15T05:29:55Z [Term] id: CMO:0000812 name: milk alpha-lactalbumin percentage namespace: Clinical_Measurement.ontology def: "The amount in milk of alpha-lactalbumin, an enzyme that catalyzes lactose synthesis in mammary epithelial cells, expressed as a percentage of total milk protein." [PT:0010003] is_a: CMO:0000795 ! milk protein percentage is_a: CMO:0000811 ! calculated milk whey protein content created_by: JSmith creation_date: 2012-06-15T05:33:49Z [Term] id: CMO:0000813 name: milk beta-lactoglobulin percentage namespace: Clinical_Measurement.ontology def: "The amount in milk of beta-lactoglobulin, which may bind retinol, expressed as a percentage of total whey protein or total protein." [PT:0010266] is_a: CMO:0000795 ! milk protein percentage is_a: CMO:0000811 ! calculated milk whey protein content created_by: JSmith creation_date: 2012-06-15T05:34:46Z [Term] id: CMO:0000814 name: milk fat yield namespace: Clinical_Measurement.ontology def: "The total amount of milk fat produced over a specific period of time." [PT:0010027] is_a: CMO:0000788 ! milk fat measurement created_by: JSmith creation_date: 2012-06-15T05:45:51Z [Term] id: CMO:0000815 name: milk fat-to-protein ratio namespace: Clinical_Measurement.ontology def: "The ratio of fat yield to protein yield in milk." [PMID:20213510] is_a: CMO:0000796 ! milk protein yield is_a: CMO:0000797 ! calculated milk protein content measurement is_a: CMO:0000814 ! milk fat yield is_a: CMO:0000825 ! calculated milk fat content measurement created_by: JSmith creation_date: 2012-06-15T05:47:54Z [Term] id: CMO:0000816 name: milk fat percentage namespace: Clinical_Measurement.ontology def: "The amount of fat in milk, expressed as a percentage of total milk amount." [PT:1000161] is_a: CMO:0000825 ! calculated milk fat content measurement created_by: JSmith creation_date: 2012-06-15T05:52:05Z [Term] id: CMO:0000817 name: milk fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the absolute amount or proportion of saturated and/or unsaturated straight chain monocarboxylic (fatty) acids in milk." [RGD:JRS] is_a: CMO:0000788 ! milk fat measurement created_by: JSmith creation_date: 2012-06-15T05:53:29Z [Term] id: CMO:0000818 name: milk unsaturated fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the absolute amount or proportion of straight chain monocarboxylic acids with one or more double or triple carbon-carbon bonds found in milk fat." [RGD:JRS, RGD:MS] is_a: CMO:0000817 ! milk fatty acid measurement created_by: JSmith creation_date: 2012-06-15T05:57:21Z [Term] id: CMO:0000819 name: milk saturated fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the absolute amount or proportion of straight chain monocarboxylic acids without double bonds in their chains found in milk fat." [RGD:JRS, RGD:MS] is_a: CMO:0000817 ! milk fatty acid measurement created_by: JSmith creation_date: 2012-06-15T05:59:17Z [Term] id: CMO:0000820 name: milk monounsaturated fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of straight chain monocarboxylic acids with only one double or triple carbon-carbon bond found in milk fat." [RGD:JRS] is_a: CMO:0000818 ! milk unsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-15T06:11:12Z [Term] id: CMO:0000821 name: milk polyunsaturated fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of straight chain monocarboxylic acids with two or more double or triple carbon-carbon bonds found in milk fat." [RGD:JRS] is_a: CMO:0000818 ! milk unsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-15T06:14:04Z [Term] id: CMO:0000822 name: milk omega-3 fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of omega-3 fatty acids in milk fat. Omega-3 fatty acids are unsaturated fatty acids in which the first unsaturated bond is in the third (n-3) position from the omega carbon." [RGD:JRS] is_a: CMO:0000818 ! milk unsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-15T06:15:56Z [Term] id: CMO:0000823 name: milk omega-6 fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of omega-6 fatty acids in milk fat. Omega-6 fatty acids are unsaturated fatty acids in which the first unsaturated bond is in the sixth (n-6) position from the omega carbon." [RGD:JRS] is_a: CMO:0000818 ! milk unsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-15T06:19:00Z [Term] id: CMO:0000824 name: milk trans fatty acid measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of unsaturated fatty acids containing at least one double bond in the trans configuration in milk fat." [RGD:JRS] is_a: CMO:0000818 ! milk unsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-15T06:20:45Z [Term] id: CMO:0000825 name: calculated milk fat content measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000826 ! milk fat content created_by: JSmith creation_date: 2012-06-18T12:55:37Z [Term] id: CMO:0000826 name: milk fat content namespace: Clinical_Measurement.ontology def: "The amount or concentration of fat in milk." [RGD:JRS] is_a: CMO:0000788 ! milk fat measurement created_by: JSmith creation_date: 2012-06-19T04:31:22Z [Term] id: CMO:0000827 name: milk fatty acid C12:1(n-3) percentage namespace: Clinical_Measurement.ontology def: "the amount in milk fat of an unsaturated, omega-3 fatty acid with a twelve-carbon backbone and one double bond, expressed as a percentage of total fatty acid amount" [PT:0000011] synonym: "milk lauroleic acid percentage" EXACT [] xref: CHEBI:38375 is_a: CMO:0000820 ! milk monounsaturated fatty acid measurement is_a: CMO:0000822 ! milk omega-3 fatty acid measurement created_by: JSmith creation_date: 2012-06-19T05:18:28Z [Term] id: CMO:0000828 name: milk fatty acid cis-9-C14:1 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of an unsaturated fatty acid with a fourteen-carbon backbone and a cis double bond at C-9, expressed as a percentage of total fatty acid amount." [PT:0010326] synonym: "milk myristoleic acid percentage" EXACT [] xref: CHEBI:27781 is_a: CMO:0000820 ! milk monounsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-19T05:20:43Z [Term] id: CMO:0000829 name: milk fatty acid cis-9-C16:1 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of an unsaturated fatty acid with a sixteen-carbon backbone and a cis double bond at C-9, expressed as a percentage of total fatty acid amount." [PT:0010372] synonym: "milk palmitoleic acid percentage" EXACT [] xref: CHEBI:28716 is_a: CMO:0000820 ! milk monounsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-19T05:21:33Z [Term] id: CMO:0000830 name: milk fatty acid cis-9-C18:1 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-9, expressed as a percentage of total fatty acid amount." [PT:0010371] synonym: "milk oleic acid percentage" EXACT [] xref: CHEBI:16196 is_a: CMO:0000820 ! milk monounsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-19T05:22:59Z [Term] id: CMO:0000831 name: milk fatty acid trans-11-C18:1 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-11." [PT:0010329] synonym: "milk trans-vaccenic acid percentage" EXACT [] synonym: "milk vaccenic acid percentage" RELATED [] xref: CHEBI:28727 is_a: CMO:0000820 ! milk monounsaturated fatty acid measurement is_a: CMO:0000824 ! milk trans fatty acid measurement created_by: JSmith creation_date: 2012-06-19T05:24:43Z [Term] id: CMO:0000832 name: milk conjugated linoleic acid percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of any/all isomers of linoleic acid in which the double bonds are conjugated, i.e. double bonds alternate with single bonds, expressed as a percentage of total fatty acid amount." [MeSH:D044243, PT:0010324] synonym: "milk CLA percentage" EXACT [] xref: CHEBI:61159 is_a: CMO:0000821 ! milk polyunsaturated fatty acid measurement created_by: JSmith creation_date: 2012-06-19T05:26:29Z [Term] id: CMO:0000833 name: milk fatty acid cis-9,cis-12-C18:2 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of an unsaturated, omega-6 fatty acid with an eighteen-carbon backbone, expressed as a percentage of total fatty acid amount." [PT:0010325] synonym: "milk linoleic acid percentage" EXACT [] xref: CHEBI:17351 is_a: CMO:0000821 ! milk polyunsaturated fatty acid measurement is_a: CMO:0000823 ! milk omega-6 fatty acid measurement created_by: JSmith creation_date: 2012-06-19T05:36:10Z [Term] id: CMO:0000834 name: milk fatty acid C10:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a ten-carbon backbone, expressed as a percentage of total fatty acid amount." [PT:0010312] synonym: "milk capric acid percentage" EXACT [] xref: CHEBI:30813 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:07:10Z [Term] id: CMO:0000835 name: milk fatty acid C12:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a twelve-carbon backbone, expressed as a percentage of total fatty acid amount." [PT:0010314] synonym: "milk lauric acid percentage" EXACT [] xref: CHEBI:30805 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:20:45Z [Term] id: CMO:0000836 name: milk fatty acid C14:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a fourteen-carbon backbone, expressed as a percentage of total fatty acid amount." [PT:0010315] synonym: "milk myristic acid percentage" EXACT [] xref: CHEBI:28875 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:22:30Z [Term] id: CMO:0000837 name: milk fatty acid C15:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a fifteen-carbon backbone, expressed as a percentage of total fatty acid amount." [PT:0000009] synonym: "milk pentadecanoic acid percentage" RELATED [] synonym: "milk pentadecylic acid percentage" RELATED [] xref: CHEBI:42504 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:24:12Z [Term] id: CMO:0000838 name: milk fatty acid C16:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a sixteen-carbon backbone, expressed as a percentage of total fatty acid amount." [PT:0010316] synonym: "milk palmitic acid percentage" EXACT [] xref: CHEBI:15756 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:26:42Z [Term] id: CMO:0000839 name: milk fatty acid C18:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with an eighteen-carbon backbone, expressed as a percentage of total fatty acid content." [PT:0010318] synonym: "milk stearic acid percentage" EXACT [] xref: CHEBI:28842 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:28:06Z [Term] id: CMO:0000840 name: milk fatty acid C20:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a twenty-carbon backbone, expressed as a percentage of total fatty acid amount." [PT:0010319] synonym: "milk arachidic acid percentage" RELATED [] synonym: "milk eicosanoic acid percentage" RELATED [] xref: CHEBI:28822 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:30:01Z [Term] id: CMO:0000841 name: milk fatty acid C24:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a twenty-four-carbon backbone, expressed as a percentage of total fatty acid content." [PT:0000010] synonym: "milk lignoceric acid percentage" RELATED [] synonym: "milk tetracosanoic acid percentage" RELATED [] xref: CHEBI:28866 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:32:16Z [Term] id: CMO:0000842 name: milk fatty acid C6:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with a six-carbon backbone, expressed as a percentage of total fatty acid content." [PT:0010308] synonym: "milk caproic acid percentage" EXACT [] xref: CHEBI:30776 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:34:23Z [Term] id: CMO:0000843 name: milk fatty acid C8:0 percentage namespace: Clinical_Measurement.ontology def: "The amount in milk fat of a saturated fatty acid with an eight-carbon backbone, expressed as a percentage of total fatty acid content." [PT:0010310] synonym: "milk caprylic acid percentage" EXACT [] xref: CHEBI:28837 is_a: CMO:0000819 ! milk saturated fatty acid measurement created_by: JSmith creation_date: 2012-06-21T05:36:15Z [Term] id: CMO:0000844 name: milk vitamin measurement namespace: Clinical_Measurement.ontology def: "Measurement in milk of the amount of an organic substance which occurs in small amounts in food and is necessary in trace amounts for the normal metabolic functioning of the body." [Dorland:Dorland's Illustrated Medical Dictionary\\\, 31st Ed] is_a: CMO:0000787 ! milk measurement created_by: JSmith creation_date: 2012-06-21T05:44:41Z [Term] id: CMO:0000845 name: milk beta carotene content namespace: Clinical_Measurement.ontology def: "The proportion or amount in milk of a carotenoid that is the most common precursor to vitamin A." [Taber:Taber's Medical Dictionary] is_a: CMO:0000844 ! milk vitamin measurement created_by: JSmith creation_date: 2012-06-21T05:54:18Z [Term] id: CMO:0000846 name: both lungs dry weight namespace: Clinical_Measurement.ontology def: "The weight together, after desiccation, of both lungs, the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Mosby:Mosby's Dental Dictionary\, 2nd Ed.] is_a: CMO:0000098 ! lung dry weight created_by: JSmith creation_date: 2012-06-22T01:21:49Z [Term] id: CMO:0000847 name: prostate gland weight namespace: Clinical_Measurement.ontology def: "The weight of the prostate gland, the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen." [Gale:Gale Encyclopedia of Medicine] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000651 ! prostate gland morphological measurement created_by: JSmith creation_date: 2012-06-22T02:13:43Z [Term] id: CMO:0000848 name: prostate gland dry weight namespace: Clinical_Measurement.ontology def: "The weight, after desiccation, of the prostate gland. The prostate is the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen." [Gale:Gale Encyclopedia of Medicine] is_a: CMO:0000847 ! prostate gland weight created_by: JSmith creation_date: 2012-06-22T02:21:11Z [Term] id: CMO:0000849 name: ventral prostate gland weight namespace: Clinical_Measurement.ontology def: "The weight of the ventral lobe of the prostate gland. The prostate is the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen." [Gale:Gale Encyclopedia of Medicine] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000847 ! prostate gland weight created_by: JSmith creation_date: 2012-06-22T03:07:35Z [Term] id: CMO:0000850 name: ventral prostate gland wet weight namespace: Clinical_Measurement.ontology def: "The weight of the ventral lobe of the prostate gland after removal from the body but without desiccation. The prostate is the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen." [Gale:Gale Encyclopedia of Medicine] is_a: CMO:0000849 ! ventral prostate gland weight created_by: JSmith creation_date: 2012-06-22T03:10:37Z [Term] id: CMO:0000851 name: ventral prostate gland dry weight namespace: Clinical_Measurement.ontology def: "The weight of the ventral lobe of the prostate gland after desiccation. The prostate is the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen." [Gale:Gale Encyclopedia of Medicine] is_a: CMO:0000849 ! ventral prostate gland weight created_by: JSmith creation_date: 2012-06-22T03:18:32Z [Term] id: CMO:0000852 name: pituitary gland dry weight namespace: Clinical_Measurement.ontology def: "The weight of the pituitary gland after desiccation. The pituitary gland is the small, oval endocrine gland attached to the base of the vertebrate brain and consisting of an anterior and posterior lobe, the secretions of which control the other endocrine glands and influence growth, metabolism, and maturation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000615 ! pituitary gland weight created_by: JSmith creation_date: 2012-06-22T04:32:47Z [Term] id: CMO:0000853 name: pituitary gland wet weight namespace: Clinical_Measurement.ontology def: "The weight of the pituitary gland after removal from the body but without desiccation. The pituitary gland is the small, oval endocrine gland attached to the base of the vertebrate brain and consisting of an anterior and posterior lobe, the secretions of which control the other endocrine glands and influence growth, metabolism, and maturation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000615 ! pituitary gland weight created_by: JSmith creation_date: 2012-06-22T04:34:15Z [Term] id: CMO:0000854 name: thymus dry weight namespace: Clinical_Measurement.ontology def: "The weight of the thymus after desiccation. The thymus is the lymphoid organ which is the site of the proliferation, differentiation and maturation of T lymphocytes, and of the production of hormones such as thymopoietin and thymosin which control these processes." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000610 ! thymus weight created_by: JSmith creation_date: 2012-06-22T06:02:56Z [Term] id: CMO:0000855 name: thymus wet weight namespace: Clinical_Measurement.ontology def: "The weight of the thymus after removal from the body but without desiccation. The thymus is the lymphoid organ which is the site of the proliferation, differentiation and maturation of T lymphocytes, and of the production of hormones such as thymopoietin and thymosin which control these processes." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000610 ! thymus weight created_by: JSmith creation_date: 2012-06-22T06:03:12Z [Term] id: CMO:0000856 name: testis dry weight namespace: Clinical_Measurement.ontology def: "The weight after desiccation of one or both of the testes, the paired egg-shaped glands normally situated in the scrotum, in which the spermatozoa develop." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000151 ! testis weight created_by: JSmith creation_date: 2012-06-22T06:06:14Z [Term] id: CMO:0000857 name: both testes dry weight namespace: Clinical_Measurement.ontology is_a: CMO:0000856 ! testis dry weight created_by: JSmith creation_date: 2012-06-22T06:07:11Z [Term] id: CMO:0000858 name: lung morphological measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the physical form or structure of the lung(s), the organ component of the respiratory system responsible for the exchange of gases between the environment and the blood." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000068 ! organ morphological measurement created_by: JSmith creation_date: 2012-06-26T10:36:43Z [Term] id: CMO:0000859 name: organ tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of an organ lesion which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000677 ! organ lesion measurement created_by: JSmith creation_date: 2012-06-26T11:34:46Z [Term] id: CMO:0000860 name: organ non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of an organ lesion which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dictionary:Multiple Dictionaries] is_a: CMO:0000677 ! organ lesion measurement created_by: JSmith creation_date: 2012-06-26T11:46:40Z [Term] id: CMO:0000861 name: heart non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a heart lesion which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dictionary:Multiple Dictionaries] is_a: CMO:0000678 ! heart lesion measurement is_a: CMO:0000860 ! organ non-tumorous lesion measurement created_by: JSmith creation_date: 2012-06-26T12:53:39Z [Term] id: CMO:0000862 name: testis lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion of the testes, the male reproductive glands that produce spermatozoa and secrete androgens. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dictionary:Multiple Dictionaries] is_a: CMO:0000677 ! organ lesion measurement created_by: JSmith creation_date: 2012-06-26T12:59:03Z [Term] id: CMO:0000863 name: testis non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion of the testes, the male reproductive glands that produce spermatozoa and secrete androgens which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dictionary:Multiple Dictionaries] is_a: CMO:0000860 ! organ non-tumorous lesion measurement is_a: CMO:0000862 ! testis lesion measurement created_by: JSmith creation_date: 2012-06-26T01:16:01Z [Term] id: CMO:0000864 name: testis tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion of the testes, the male reproductive glands that produce spermatozoa and secrete androgens, which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dictionary:Multiple Dictionaries] is_a: CMO:0000859 ! organ tumorous lesion measurement is_a: CMO:0000862 ! testis lesion measurement created_by: JSmith creation_date: 2012-06-26T01:19:21Z [Term] id: CMO:0000865 name: heart tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion of the heart which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive." [Dictionary:Multiple Dictionaries] is_a: CMO:0000678 ! heart lesion measurement is_a: CMO:0000859 ! organ tumorous lesion measurement created_by: JSmith creation_date: 2012-06-26T01:22:44Z [Term] id: CMO:0000866 name: mammary gland tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion of the mammary gland which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive." [Dictionary:Multiple Dictionaries] is_a: CMO:0000859 ! organ tumorous lesion measurement created_by: JSmith creation_date: 2012-06-26T01:39:25Z [Term] id: CMO:0000867 name: calculated abdominal fat pad weight namespace: Clinical_Measurement.ontology is_a: CMO:0000088 ! abdominal fat pad weight created_by: JSmith creation_date: 2012-07-02T10:07:14Z [Term] id: CMO:0000868 name: adipocyte volume namespace: Clinical_Measurement.ontology def: "The volume of a single isolated fat cell, a connective tissue cell specialized for the synthesis and storage of fat; such cells consist of a large cytoplasmic vesicle filled with globules of triglycerides with the nucleus displaced to one side and the cytoplasm seen as a thin line around the fat vesicle." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, RGD:JRS] comment: This is not to be used for measurement of a tissue. For tissue-level measurements use terms from the "body fat" branches of the ontology. is_a: CMO:0000456 ! adipocyte measurement created_by: JSmith creation_date: 2012-07-02T11:26:03Z [Term] id: CMO:0000869 name: adipocyte glucose uptake measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of glucose transported into a sample of fat cells. Glucose is the monosaccharide sugar which is the principal circulating sugar in the blood and the major energy source of the body. Fat cells are connective tissue cells specialized for the synthesis and storage of fat; such cells consist of a large cytoplasmic vesicle filled with globules of triglycerides with the nucleus displaced to one side and the cytoplasm seen as a thin line around the fat vesicle." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000456 ! adipocyte measurement created_by: JSmith creation_date: 2012-07-02T11:37:48Z [Term] id: CMO:0000870 name: adipocyte maximal glucose uptake namespace: Clinical_Measurement.ontology def: "Measurement of the maximum, that is, the maximally stimulated, amount of glucose that can be transported into a fat cell. Glucose is the monosaccharide sugar which is the principal circulating sugar in the blood and the major energy source of the body. Fat cells are connective tissue cells specialized for the synthesis and storage of fat; such cells consist of a large cytoplasmic vesicle filled with globules of triglycerides with the nucleus displaced to one side and the cytoplasm seen as a thin line around the fat vesicle." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "adipocyte maximum glucose uptake" EXACT [] is_a: CMO:0000869 ! adipocyte glucose uptake measurement created_by: JSmith creation_date: 2012-07-02T11:42:40Z [Term] id: CMO:0000871 name: adipocyte basal glucose uptake namespace: Clinical_Measurement.ontology def: "Measurement of the unstimulated, baseline or lowest possible amount of glucose transported into a fat cell. Glucose is the monosaccharide sugar which is the principal circulating sugar in the blood and the major energy source of the body. Fat cells are connective tissue cells specialized for the synthesis and storage of fat; such cells consist of a large cytoplasmic vesicle filled with globules of triglycerides with the nucleus displaced to one side and the cytoplasm seen as a thin line around the fat vesicle." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "adipocyte baseline glucose uptake" RELATED [] is_a: CMO:0000869 ! adipocyte glucose uptake measurement created_by: JSmith creation_date: 2012-07-02T11:48:08Z [Term] id: CMO:0000872 name: calculated adipocyte glucose uptake measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000869 ! adipocyte glucose uptake measurement created_by: JSmith creation_date: 2012-07-02T11:52:20Z [Term] id: CMO:0000873 name: absolute change in adipocyte glucose uptake namespace: Clinical_Measurement.ontology def: "The difference in the amount of glucose transported into a fat cell between two conditions, for example between the basal or baseline state and a stimulated state, such as occurs with administration of insulin." [Dictionary:Multiple dictionaries] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. synonym: "incremental glucose uptake" RELATED [] is_a: CMO:0000872 ! calculated adipocyte glucose uptake measurement created_by: JSmith creation_date: 2012-07-02T11:53:42Z [Term] id: CMO:0000874 name: adipocyte maximal glucose uptake to basal glucose uptake ratio namespace: Clinical_Measurement.ontology def: "The relationship between the maximum and minimum amounts of glucose which are transported into a fat cell, usually expressed as a decimal fraction." [RGD:JRS] is_a: CMO:0000872 ! calculated adipocyte glucose uptake measurement created_by: JSmith creation_date: 2012-07-02T11:55:35Z [Term] id: CMO:0000875 name: adipocyte free fatty acid secretion measurement namespace: Clinical_Measurement.ontology def: "Measurement of the amount of free fatty acids, i.e. those not bound to other molecules or moieties, secreted from a fat cell. Free fatty acid secretion can be used as a measure of lipolysis in adipocytes." [Dictionary:Multiple dictionaries] synonym: "adipocyte free fatty acid release measurement" EXACT [] synonym: "adipocyte NEFA release measurement" RELATED [] synonym: "adipocyte NEFA secretion measurement" RELATED [] synonym: "adipocyte non-esterified fatty acid release measurement" RELATED [] synonym: "adipocyte non-esterified fatty acid secretion measurement" RELATED [] is_a: CMO:0000456 ! adipocyte measurement created_by: JSmith creation_date: 2012-07-02T12:15:05Z [Term] id: CMO:0000876 name: adipocyte basal free fatty acid secretion namespace: Clinical_Measurement.ontology def: "Measurement of the unstimulated, baseline or lowest possible amount of free or non-esterified fatty acid released/secreted from a fat cell." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "adipocyte basal free fatty acid release" EXACT [] synonym: "adipocyte basal NEFA release" RELATED [] synonym: "adipocyte basal NEFA secretion" RELATED [] synonym: "adipocyte basal non-esterified fatty acid release" RELATED [] synonym: "adipocyte basal non-esterified fatty acid secretion" RELATED [] synonym: "adipocyte baseline free fatty acid secretion" EXACT [] is_a: CMO:0000875 ! adipocyte free fatty acid secretion measurement created_by: JSmith creation_date: 2012-07-03T09:09:24Z [Term] id: CMO:0000877 name: adipocyte maximal free fatty acid secretion namespace: Clinical_Measurement.ontology def: "Measurement of the maximum, that is, the maximally stimulated, amount of free or non-esterified fatty acid that can be released/secreted from a fat cell." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "adipocyte absolute fatty acid secretion" RELATED [] synonym: "adipocyte absolute NEFA secretion" RELATED [] synonym: "adipocyte maximal free fatty acid release" EXACT [] synonym: "adipocyte maximal NEFA release" RELATED [] synonym: "adipocyte maximal NEFA secretion" RELATED [] synonym: "adipocyte maximal non-esterified fatty acid release" RELATED [] synonym: "adipocyte maximal non-esterified fatty acid secretion" RELATED [] synonym: "adipocyte maximum free fatty acid secretion" EXACT [] is_a: CMO:0000875 ! adipocyte free fatty acid secretion measurement created_by: JSmith creation_date: 2012-07-03T09:09:33Z [Term] id: CMO:0000878 name: calculated adipocyte free fatty acid secretion measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000875 ! adipocyte free fatty acid secretion measurement created_by: JSmith creation_date: 2012-07-03T09:12:05Z [Term] id: CMO:0000879 name: absolute change in adipocyte free fatty acid secretion namespace: Clinical_Measurement.ontology def: "The difference in the amount of free or non-esterified fatty acid released/secreted from a fat cell between two conditions, for example between the basal or baseline state and a stimulated state, such as occurs with administration of a hormone which stimulates lipolysis." [Dictionary:Multiple dictionaries] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. synonym: "absolute change in adipocyte free fatty acid release" EXACT [] synonym: "absolute change in adipocyte NEFA release" RELATED [] synonym: "absolute change in adipocyte NEFA secretion" RELATED [] synonym: "absolute change in adipocyte non-esterified fatty acid release" RELATED [] synonym: "absolute change in adipocyte non-esterified fatty acid secretion" RELATED [] synonym: "adipocyte incremental free fatty acid secretion" RELATED [] synonym: "adipocyte incremental NEFA secretion" RELATED [] is_a: CMO:0000878 ! calculated adipocyte free fatty acid secretion measurement created_by: JSmith creation_date: 2012-07-03T09:13:23Z [Term] id: CMO:0000880 name: adipocyte maximal free fatty acid secretion to basal free fatty acid secretion ratio namespace: Clinical_Measurement.ontology def: "The relationship between the maximum and minimum amounts of free or non-esterified fatty acid released/secreted from a fat cell, usually expressed as a decimal fraction." [RGD:JRS] synonym: "adipocyte maximal NEFA secretion to basal NEFA secretion ratio" RELATED [] synonym: "adipocyte maximal non-esterified fatty acid secretion to basal non-esterified fatty acid secretion ratio" RELATED [] is_a: CMO:0000878 ! calculated adipocyte free fatty acid secretion measurement created_by: JSmith creation_date: 2012-07-03T09:37:02Z [Term] id: CMO:0000881 name: prostate lesion measurement namespace: Clinical_Measurement.ontology def: "Any measurement of one or more lesion(s) in the prostate gland, the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Gale:Gale Encyclopedia of Medicine] is_a: CMO:0000677 ! organ lesion measurement created_by: JSmith creation_date: 2012-07-03T09:48:21Z [Term] id: CMO:0000882 name: prostate tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of one or more prostate lesion(s) which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000859 ! organ tumorous lesion measurement is_a: CMO:0000881 ! prostate lesion measurement created_by: JSmith creation_date: 2012-07-03T09:59:56Z [Term] id: CMO:0000883 name: percentage of study population displaying prostate tumorous lesions at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display prostate tumorous lesions at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "prostate tumorous lesion frequency" RELATED [] synonym: "prostate tumorous lesion prevalence" RELATED [] is_a: CMO:0000882 ! prostate tumorous lesion measurement is_a: CMO:0000934 ! prostate tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-03T10:02:25Z [Term] id: CMO:0000884 name: prostate tumorous lesion number namespace: Clinical_Measurement.ontology def: "The number of tumorous lesions in the prostate gland, the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000882 ! prostate tumorous lesion measurement created_by: JSmith creation_date: 2012-07-03T10:05:30Z [Term] id: CMO:0000885 name: prostate tumorous lesion size measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the size of an individual tumorous lesion in the prostate, or of the amount of the prostate occupied by tumorous lesions. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000882 ! prostate tumorous lesion measurement created_by: JSmith creation_date: 2012-07-03T10:16:43Z [Term] id: CMO:0000886 name: prostate tumorous lesion area measurement namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the prostate, or a measurement of the total area occupied by tumorous lesions in a cross-section of the prostate. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000885 ! prostate tumorous lesion size measurement created_by: JSmith creation_date: 2012-07-03T10:19:36Z [Term] id: CMO:0000887 name: area of prostate occupied by tumorous lesions namespace: Clinical_Measurement.ontology def: "A measurement of the total extent of the two-dimensional surface of the prostate occupied by tumorous lesions, or a measurement of the total extent of a two-dimensional cross-section through the prostate occupied by tumorous lesions. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000886 ! prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T10:21:30Z [Term] id: CMO:0000888 name: area of individual prostate tumorous lesion namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the prostate. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000886 ! prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T10:22:21Z [Term] id: CMO:0000889 name: calculated prostate tumorous lesion area measurement namespace: Clinical_Measurement.ontology def: "Measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the prostate, or a measurement of the total area occupied by tumorous lesions in a cross-section of the prostate when such a measurement has been normalized or adjusted by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000886 ! prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T10:24:43Z [Term] id: CMO:0000890 name: area of prostate occupied by tumorous lesions as percentage of total prostate area namespace: Clinical_Measurement.ontology def: "A calculated measurement of the area of the prostate gland occupied by tumorous lesions compared to the total area of the prostate gland, expressed as a percentage. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, RGD:JRS] is_a: CMO:0000887 ! area of prostate occupied by tumorous lesions is_a: CMO:0000889 ! calculated prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T10:25:25Z [Term] id: CMO:0000891 name: ventral prostate tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of one or more tumorous lesion(s) of the ventral lobe of the prostate. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000882 ! prostate tumorous lesion measurement created_by: JSmith creation_date: 2012-07-03T11:36:15Z [Term] id: CMO:0000892 name: ventral prostate tumorous lesion number namespace: Clinical_Measurement.ontology def: "The number of tumorous lesions in the ventral lobe of the prostate gland. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000884 ! prostate tumorous lesion number is_a: CMO:0000891 ! ventral prostate tumorous lesion measurement created_by: JSmith creation_date: 2012-07-03T11:54:05Z [Term] id: CMO:0000893 name: percentage of study population displaying ventral prostate tumorous lesions at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display tumorous lesions of the ventral lobe of the prostate compared to the total number of individuals in the study population, expressed as a percentage. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "ventral prostate tumorous lesion frequency" RELATED [] synonym: "ventral prostate tumorous lesion prevalence" RELATED [] is_a: CMO:0000883 ! percentage of study population displaying prostate tumorous lesions at a point in time is_a: CMO:0000891 ! ventral prostate tumorous lesion measurement created_by: JSmith creation_date: 2012-07-03T11:55:14Z [Term] id: CMO:0000894 name: ventral prostate tumorous lesion size measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the size of an individual tumorous lesion in the ventral lobe of the prostate, or of the amount of the ventral lobe of the prostate occupied by tumorous lesions. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000891 ! ventral prostate tumorous lesion measurement created_by: JSmith creation_date: 2012-07-03T01:22:13Z [Term] id: CMO:0000895 name: ventral prostate tumorous lesion area measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the area of an individual tumorous lesion in the ventral lobe of the prostate, or of the area of the ventral lobe of the prostate occupied by tumorous lesions. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000894 ! ventral prostate tumorous lesion size measurement created_by: JSmith creation_date: 2012-07-03T01:23:54Z [Term] id: CMO:0000896 name: area of individual ventral prostate tumorous lesion namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the ventral prostate. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000888 ! area of individual prostate tumorous lesion is_a: CMO:0000895 ! ventral prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T01:25:23Z [Term] id: CMO:0000897 name: area of ventral prostate occupied by tumorous lesions namespace: Clinical_Measurement.ontology def: "A measurement of the total extent of the two-dimensional surface of the ventral prostate occupied by tumorous lesions, or a measurement of the total extent of a two-dimensional cross-section through the ventral prostate occupied by tumorous lesions. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000887 ! area of prostate occupied by tumorous lesions is_a: CMO:0000895 ! ventral prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T01:25:38Z [Term] id: CMO:0000898 name: calculated ventral prostate tumorous lesion area measurement namespace: Clinical_Measurement.ontology def: "Measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the ventral prostate, or a measurement of the total area occupied by tumorous lesions in a cross-section of the ventral prostate when such a measurement has been normalized or adjusted by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000889 ! calculated prostate tumorous lesion area measurement is_a: CMO:0000895 ! ventral prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T01:26:24Z [Term] id: CMO:0000899 name: area of ventral prostate occupied by tumorous lesions as percentage of total ventral prostate area namespace: Clinical_Measurement.ontology def: "The area of the ventral lobe of the prostate gland occupied by tumorous lesions compared to the total area of the ventral lobe of the prostate gland, expressed as a percentage. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000897 ! area of ventral prostate occupied by tumorous lesions is_a: CMO:0000898 ! calculated ventral prostate tumorous lesion area measurement created_by: JSmith creation_date: 2012-07-03T01:28:03Z [Term] id: CMO:0000900 name: single testis weight as percentage of body weight namespace: Clinical_Measurement.ontology def: "The weight of one of the testes, the paired egg-shaped glands normally situated in the scrotum, in which the spermatozoa develop, expressed as a percentage of the total body weight of the organism." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000153 ! testis weight as percentage of body weight created_by: JSmith creation_date: 2012-07-09T05:02:55Z [Term] id: CMO:0000901 name: both testes weight as percentage of body weight namespace: Clinical_Measurement.ontology def: "The weight of both testes, the paired egg-shaped glands normally situated in the scrotum, in which the spermatozoa develop, expressed as a percentage of the total body weight of the organism." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000153 ! testis weight as percentage of body weight created_by: JSmith creation_date: 2012-07-09T05:03:46Z [Term] id: CMO:0000902 name: prostate tumor measurement namespace: Clinical_Measurement.ontology def: "Measurement of an abnormal growth of tissue in the prostate gland resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000341 ! tumor measurement is_a: CMO:0000882 ! prostate tumorous lesion measurement created_by: JSmith creation_date: 2012-07-09T05:46:21Z [Term] id: CMO:0000903 name: urinary bladder morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the urinary bladder, the elastic, muscular sac in which urine collects before excretion." [Dictionary:American Heritage Dictionary of the English Language] is_a: CMO:0000091 ! renal/urinary morphological measurement created_by: JSmith creation_date: 2012-07-11T10:08:53Z [Term] id: CMO:0000904 name: ureter morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the ureter, one or both of the long, narrow ducts that convey urine from the kidneys to the urinary bladder." [Dictionary:American Heritage Dictionary of the English Language] is_a: CMO:0000091 ! renal/urinary morphological measurement created_by: JSmith creation_date: 2012-07-11T10:17:11Z [Term] id: CMO:0000905 name: urethra morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the urethra, the canal through which urine is discharged from the bladder in most mammals and through which semen is discharged in the male." [Dictionary:American Heritage Dictionary of the English Language] is_a: CMO:0000091 ! renal/urinary morphological measurement created_by: JSmith creation_date: 2012-07-11T10:19:31Z [Term] id: CMO:0000906 name: kidney measurement namespace: Clinical_Measurement.ontology def: "Any measurement, morphological or physiological, involving the kidney or any part thereof." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000080 ! renal/urinary measurement is_a: CMO:0000669 ! organ measurement created_by: JSmith creation_date: 2012-07-11T10:34:14Z [Term] id: CMO:0000907 name: renal blood flow rate namespace: Clinical_Measurement.ontology def: "Renal blood flow (RBF) is the volume of blood delivered to or exiting from the kidneys per unit time." [Wikipedia:http\://en.wikipedia.org/wiki/Renal_blood_flow] is_a: CMO:0000196 ! blood flow rate is_a: CMO:0000906 ! kidney measurement created_by: JSmith creation_date: 2012-07-11T10:38:08Z [Term] id: CMO:0000908 name: renal arterial blood flow rate namespace: Clinical_Measurement.ontology def: "Arterial renal blood flow (RBFa) is the volume of blood delivered to the kidneys per unit time via the renal arteries." [Wikipedia:http\://en.wikipedia.org/wiki/Renal_blood_flow] is_a: CMO:0000198 ! arterial blood flow rate is_a: CMO:0000907 ! renal blood flow rate created_by: JSmith creation_date: 2012-07-11T10:44:48Z [Term] id: CMO:0000909 name: renal venous blood flow rate namespace: Clinical_Measurement.ontology def: "Venous renal blood flow (RBFv) is the volume of blood exiting from the kidneys per unit time via the renal veins." [Wikipedia:http\://en.wikipedia.org/wiki/Renal_blood_flow] is_a: CMO:0000199 ! venous blood flow rate is_a: CMO:0000907 ! renal blood flow rate created_by: JSmith creation_date: 2012-07-11T10:48:22Z [Term] id: CMO:0000910 name: brain lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion of the brain, the the portion of the central nervous system enclosed within the cranium which is composed of gray matter and white matter and is the primary center for the regulation and control of bodily activities, receiving and interpreting sensory impulses, and transmitting information to the muscles and body organs. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000677 ! organ lesion measurement is_a: CMO:0000911 ! brain measurement created_by: JSmith creation_date: 2012-07-11T11:07:42Z [Term] id: CMO:0000911 name: brain measurement namespace: Clinical_Measurement.ontology def: "Any measurement of all or part of the brain, the portion of the central nervous system enclosed within the cranium which is composed of gray matter and white matter and is the primary center for the regulation and control of bodily activities, receiving and interpreting sensory impulses, and transmitting information to the muscles and body organs." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000669 ! organ measurement created_by: JSmith creation_date: 2012-07-11T11:08:16Z [Term] id: CMO:0000912 name: brain non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a brain lesion which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dictionary:Multiple dictionaries] is_a: CMO:0000860 ! organ non-tumorous lesion measurement is_a: CMO:0000910 ! brain lesion measurement created_by: JSmith creation_date: 2012-07-11T11:20:13Z [Term] id: CMO:0000913 name: brain tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of an organ lesion which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dictionary:Multiple dictionaries] is_a: CMO:0000859 ! organ tumorous lesion measurement is_a: CMO:0000910 ! brain lesion measurement created_by: JSmith creation_date: 2012-07-11T11:22:45Z [Term] id: CMO:0000914 name: heart right ventricle weight to body weight ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of the right ventricle, the lower chamber of the right side of the heart, which pumps venous blood through the pulmonary trunk and arteries to the capillaries of the lung, is divided by the total weight of the body and presented as a ratio thus normalizing it to body weight." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0001124 ! calculated heart right ventricle weight created_by: JSmith creation_date: 2012-07-11T12:08:49Z [Term] id: CMO:0000915 name: heart right ventricle weight as a percentage of body weight namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of the right ventricle, the lower chamber of the right side of the heart, which pumps venous blood through the pulmonary trunk and arteries to the capillaries of the lung, is presented as percentage of the total weight of the body thus normalizing it to body weight." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0001124 ! calculated heart right ventricle weight created_by: JSmith creation_date: 2012-07-11T12:09:38Z [Term] id: CMO:0000916 name: musculoskeletal system measurement namespace: Clinical_Measurement.ontology def: "Measurement of the bodily system that consists of the muscles, bones, joints, and related structures, such as the tendons and connective tissue and which supports and protects the body, functions in the movement of body parts and organs, produces blood cells, and stores minerals." [Dictionary:The American Heritage Medical Dictionary, Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-07-12T10:30:15Z [Term] id: CMO:0000917 name: joint measurement namespace: Clinical_Measurement.ontology def: "measurement of one or more of the articulations between bones which may be immovable, slightly movable or freely movable." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000916 ! musculoskeletal system measurement created_by: JSmith creation_date: 2012-07-12T10:36:29Z [Term] id: CMO:0000918 name: joint inflammation measurement namespace: Clinical_Measurement.ontology def: "Measurement of inflammation of one or more joints. Inflammation is a protective tissue response to injury or destruction of tissues often characterized by pain, heat, redness, swelling, and loss of function and histologically involving vasodilation, increased vascular permiability and blood flow, exudation of fluids, and leukocytic migration into the inflammatory focus." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000917 ! joint measurement created_by: JSmith creation_date: 2012-07-12T10:56:40Z [Term] id: CMO:0000919 name: joint inflammation composite score namespace: Clinical_Measurement.ontology def: "A measurement of joint inflammation which is derived from a combination of multiple measurements and/or objective or subjective severity scores according to a specified formula or set of criteria." [Dictionary:Mondofacto Online Medical Dictionary, RGD:JRS] is_a: CMO:0000918 ! joint inflammation measurement created_by: JSmith creation_date: 2012-07-12T11:10:23Z [Term] id: CMO:0000920 name: platelet aggregation measurement namespace: Clinical_Measurement.ontology def: "Measurement of the ability of platelets to aggregate in response to a known platelet aggregating factor such as collagen, ADP or thrombin." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] synonym: "platelet aggregation test" RELATED [] is_a: CMO:0000206 ! in vitro coagulation measurement is_a: CMO:0000923 ! platelet function measurement created_by: JSmith creation_date: 2012-07-12T11:47:19Z [Term] id: CMO:0000921 name: platelet measurement namespace: Clinical_Measurement.ontology def: "Any measurement of platelets, the disk-shaped structures found in the blood of mammals which play a vital role in blood coagulation. Platelets lack nuclei and DNA but contain active enzymes and mitochondria." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000036 ! blood cell measurement created_by: JSmith creation_date: 2012-07-12T01:22:42Z [Term] id: CMO:0000922 name: platelet intracellular calcium level namespace: Clinical_Measurement.ontology def: "Measurement of the amount or concentration of calcium within platelets." [RGD:JRS] is_a: CMO:0000921 ! platelet measurement created_by: JSmith creation_date: 2012-07-12T01:29:59Z [Term] id: CMO:0000923 name: platelet function measurement namespace: Clinical_Measurement.ontology def: "Any measurement which is used to assess the ability of platelets to become activated, aggregate and promote clotting." [Website:labtestsonline.org] is_a: CMO:0000921 ! platelet measurement created_by: JSmith creation_date: 2012-07-12T01:37:06Z [Term] id: CMO:0000924 name: cerebrovascular lesion measurement namespace: Clinical_Measurement.ontology def: "A non-tumorous, that is non-neoplastic, lesion of the brain which involves or is caused by a component of the vascular system and blood supply of the brain. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, Mosby:Mosby's Medical Dictionary\, 8th Ed] synonym: "stroke measurement" RELATED [] is_a: CMO:0000912 ! brain non-tumorous lesion measurement created_by: JSmith creation_date: 2012-07-16T10:52:36Z [Term] id: CMO:0000925 name: percentage of study population displaying cerebrovascular lesions at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display non-tumorous cerebrovascular lesions at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage. A non-tumorous cerebrovascular lesion is a non-neoplastic, localized, pathological change in the structure of the brain which involves or is caused by a component of the vascular system and/or blood supply of the brain, due to injury or disease; especially one that is circumscribed and well defined." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, Mosby:Mosby's Medical Dictionary\, 8th Ed] synonym: "cerebrovascular lesion prevalence" RELATED [] synonym: "stroke prevalence" RELATED [] is_a: CMO:0000924 ! cerebrovascular lesion measurement is_a: CMO:0000931 ! cerebrovascular non-tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T11:08:03Z [Term] id: CMO:0000926 name: disease incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "Any measurement in which the number of individuals in a study population that display a disease at a point in time or develop a disease within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] comment: Epidemiologically incidence specifically refers to "the rate at which a certain event occurs, as the number of new cases of a specific disease occurring during a certain period in a population at risk" (Dorland), but in popular usage it can also be used as a measure of the number of individuals in a population which have a particular condition, i.e. as a synonym for prevalence. is_a: CMO:0001149 ! disease population measurement created_by: JSmith creation_date: 2012-07-16T11:32:39Z [Term] id: CMO:0000927 name: tumor incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population displaying at a point in time one or more tumors--that is, abnormal growth(s) of tissue resulting from uncontrolled, progressive multiplication of cells which serve no physiological function-- of a particular organ or developing such growths within a determined period of time, are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000341 ! tumor measurement is_a: CMO:0000928 ! organ tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T11:44:50Z [Term] id: CMO:0000928 name: organ tumorous lesion incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display one or more tumorous lesion(s) of a particular organ at a point in time or develop such lesions within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. A tumorous lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined, but which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000926 ! disease incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:05:30Z [Term] id: CMO:0000929 name: organ non-tumorous lesion incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display one or more non-tumorous lesion(s) of a particular organ at a point in time or develop such lesions within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. A non-tumorous lesion is a localized pathological change in structure of an organ or tissue due to injury or disease, which is not neoplastic in origin; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000926 ! disease incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:07:23Z [Term] id: CMO:0000930 name: brain non-tumorous lesion incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display one or more non-tumorous lesion(s) of the brain at a point in time or develop such lesions within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. A non-tumorous lesion is a localized pathological change in structure of an organ or tissue due to injury or disease, which is not neoplastic in origin; especially one that is circumscribed and well defined. Examples of non-tumorous lesions of the brain would include infarctions, hemorrhages, etc." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000929 ! organ non-tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:14:20Z [Term] id: CMO:0000931 name: cerebrovascular non-tumorous lesion incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display one or more non-tumorous cerebrovascular lesion(s) at a point in time or develop such lesions within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. A non-tumorous cerebrovascular lesion is a non-neoplastic, localized, pathological change in the structure of the brain which involves or is caused by a component of the vascular system and/or blood supply of the brain, due to injury or disease; especially one that is circumscribed and well defined." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000930 ! brain non-tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:22:19Z [Term] id: CMO:0000932 name: percentage of study population developing cerebrovascular lesions during a period of time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which develop new instances of non-tumorous cerebrovascular lesions during a certain period compared to the total number of individuals in the study population, expressed as a percentage. A non-tumorous cerebrovascular lesion is a non-neoplastic, localized, pathological change in the structure of the brain which involves or is caused by a component of the vascular system and/or blood supply of the brain, due to injury or disease; especially one that is circumscribed and well defined." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "cerebrovascular lesions incidence" RELATED [] synonym: "stroke incidence" RELATED [] is_a: CMO:0000924 ! cerebrovascular lesion measurement is_a: CMO:0000931 ! cerebrovascular non-tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:32:41Z [Term] id: CMO:0000933 name: percentage of study population developing prostate tumorous lesions during a period of time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which develop new instances of prostate tumorous lesions during a certain period compared to the total number of individuals in the study population, expressed as a percentage. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "prostate tumorous lesion incidence" RELATED [] is_a: CMO:0000882 ! prostate tumorous lesion measurement is_a: CMO:0000934 ! prostate tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:38:45Z [Term] id: CMO:0000934 name: prostate tumorous lesion incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display one or more prostate tumorous lesion(s) at a point in time or develop such lesions within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000928 ! organ tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:41:46Z [Term] id: CMO:0000935 name: prostate tumor incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population displaying at a point in time one or more prostate tumors--that is, abnormal growth(s) of the tissue of the prostate gland, the gland surrounding the male urethra just below the base of the bladder which secretes a fluid that constitutes a major portion of the semen, resulting from uncontrolled, progressive multiplication of cells which serve no physiological function--or developing such growths within a determined period of time, are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000902 ! prostate tumor measurement is_a: CMO:0000927 ! tumor incidence/prevalence measurement is_a: CMO:0000934 ! prostate tumorous lesion incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T12:50:43Z [Term] id: CMO:0000936 name: renal agenesis incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display renal agenesis, the failure to develop one or both kidneys, at a point in time or the number of new cases of renal agenesis which appear within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000926 ! disease incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T02:54:29Z [Term] id: CMO:0000937 name: unilateral renal agenesis incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display unilateral renal agenesis, the failure to develop one of the kidneys, at a point in time or the number of new cases of unilateral renal agenesis which appear within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000936 ! renal agenesis incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T02:56:46Z [Term] id: CMO:0000938 name: bilateral renal agenesis incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population that display bilateral renal agenesis, the failure to develop both kidneys resulting in a complete lack of kidneys in the individual, at a point in time or the number of new cases of bilateral renal agenesis which appear within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000936 ! renal agenesis incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T02:59:41Z [Term] id: CMO:0000939 name: percentage of study population displaying unilateral renal agenesis at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display unilateral renal agenesis, the failure to develop one of the kidneys, at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "unilateral renal agenesis prevalence" RELATED [] is_a: CMO:0000937 ! unilateral renal agenesis incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T03:10:28Z [Term] id: CMO:0000940 name: percentage of study population developing unilateral renal agenesis during a period of time namespace: Clinical_Measurement.ontology def: "The number of new cases of unilateral renal agenesis, the failure to develop one of the kidneys, appearing in a study population during a certain period compared to the total number of individuals in the study population, expressed as a percentage." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "unilateral renal agenesis incidence" RELATED [] is_a: CMO:0000937 ! unilateral renal agenesis incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T03:11:54Z [Term] id: CMO:0000941 name: percentage of study population displaying bilateral renal agenesis at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display bilateral renal agenesis, the failure to develop both kidneys resulting in a complete lack of kidneys in the individual, at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "bilateral renal agenesis prevalence" RELATED [] is_a: CMO:0000938 ! bilateral renal agenesis incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T03:30:35Z [Term] id: CMO:0000942 name: percentage of study population developing bilateral renal agenesis during a period of time namespace: Clinical_Measurement.ontology def: "The number of new cases of bilateral renal agenesis, the failure to develop both kidneys resulting in a complete lack of kidneys in the individual, appearing in a study population during a certain period compared to the total number of individuals in the study population, expressed as a percentage." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "bilateral renal agenesis incidence" RELATED [] is_a: CMO:0000938 ! bilateral renal agenesis incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T03:31:53Z [Term] id: CMO:0000943 name: percentage of study population developing ventral prostate tumorous lesions during a period of time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which develop new instances of tumorous lesions of the ventral prostate during a certain period compared to the total number of individuals in the study population, expressed as a percentage. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "ventral prostate tumorous lesion incidence" RELATED [] is_a: CMO:0000933 ! percentage of study population developing prostate tumorous lesions during a period of time created_by: JSmith creation_date: 2012-07-16T03:41:22Z [Term] id: CMO:0000944 name: percentage of study population displaying prostate tumors at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display tumors of the prostate gland compared to the total number of individuals in the study population, expressed as a percentage. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "prostate tumor prevalence" RELATED [] is_a: CMO:0000935 ! prostate tumor incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T03:57:50Z [Term] id: CMO:0000945 name: percentage of study population developing prostate tumors during a period of time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which develop new instances of prostate tumors during a certain period compared to the total number of individuals in the study population, expressed as a percentage. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "prostate tumor incidence" RELATED [] is_a: CMO:0000935 ! prostate tumor incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T03:59:12Z [Term] id: CMO:0000946 name: mammary tumor incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population displaying one or more tumors of the mammary gland at a point in time or developing such growths within a determined period of time, are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000347 ! mammary tumor measurement is_a: CMO:0000927 ! tumor incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T04:15:50Z [Term] id: CMO:0000947 name: percentage of study population displaying mammary tumors at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display tumors of the mammary gland compared to the total number of individuals in the study population, expressed as a percentage. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "mammary tumor prevalence" RELATED [] is_a: CMO:0000946 ! mammary tumor incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T04:16:31Z [Term] id: CMO:0000948 name: percentage of study population developing mammary tumors during a period of time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which develop new instances of mammary tumors during a certain period compared to the total number of individuals in the study population, expressed as a percentage. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "mammary tumor incidence" RELATED [] is_a: CMO:0000946 ! mammary tumor incidence/prevalence measurement created_by: JSmith creation_date: 2012-07-16T04:18:28Z [Term] id: CMO:0000949 name: calculated urine protein level namespace: Clinical_Measurement.ontology def: "Any measurement of urine protein which has been normalized or adjusted by a mathematical process or computation." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000591 ! urine protein level created_by: JSmith creation_date: 2012-07-18T01:58:49Z [Term] id: CMO:0000950 name: urine protein level to body weight ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of the amount of protein in a specific volume of urine is divided by the total weight of the body and presented as a ratio thus normalizing it to body weight." [RGD:JRS] is_a: CMO:0000949 ! calculated urine protein level created_by: JSmith creation_date: 2012-07-18T02:07:44Z [Term] id: CMO:0000951 name: heart left ventricle morphological measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the physical form or structure of the left ventricle of the heart. The left ventricle is the lower chamber of the left side of the heart, which pumps oxygenated blood out through the aorta to all the tissues of the body." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000339 ! heart ventricle morphological measurement created_by: JSmith creation_date: 2012-07-18T04:24:26Z [Term] id: CMO:0000952 name: heart right ventricle morphological measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the physical form or structure of the right ventricle of the heart. The right ventricle is the lower chamber of the right side of the heart, which pumps venous blood through the pulmonary trunk and arteries to the capillaries of the lung." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000339 ! heart ventricle morphological measurement created_by: JSmith creation_date: 2012-07-18T04:30:51Z [Term] id: CMO:0000953 name: body movement measurement namespace: Clinical_Measurement.ontology def: "Any measurement of a change of place or position of all or part of the body of an organism." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-07-19T05:25:31Z [Term] id: CMO:0000954 name: voluntary body movement measurement namespace: Clinical_Measurement.ontology def: "Measurement of a movement of all or part of the body which is originated, undertaken, controlled, or accomplished as a result of an organism's free will or choice." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000953 ! body movement measurement created_by: JSmith creation_date: 2012-07-19T05:28:44Z [Term] id: CMO:0000955 name: voluntary locomotion measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the movement of an organism from one place or position to another (especially such a movement accomplished by the action of appendages such as flagella, limbs, or wings) which originated with or was undertaken, controlled, or accomplished as a result of that organism's free will or choice." [Dictionary:The American Heritage Science Dictionary, Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000954 ! voluntary body movement measurement created_by: JSmith creation_date: 2012-07-23T07:06:29Z [Term] id: CMO:0000956 name: measurement of voluntary locomotion in an experimental apparatus namespace: Clinical_Measurement.ontology def: "Any measurement of the movement of an organism from one place to another in a piece of technical equipment or machinery, or in an appliance or device designed for a particular purpose (especially such a movement accomplished by the action of appendages such as flagella, limbs, or wings) originated, undertaken, controlled, or accomplished as a result of free will or choice." [Dictionary:The American Heritage Science Dictionary, Dictionary:The Online Compact Oxford English Dictionary, Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000955 ! voluntary locomotion measurement created_by: JSmith creation_date: 2012-07-23T07:53:10Z [Term] id: CMO:0000957 name: measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "Any measurement of the movement of an organism from one place to another into, out of or within a distinct and specified area of an experimental apparatus (especially such a movement accomplished by the action of appendages such as flagella, limbs, or wings) originated, undertaken, controlled, or accomplished as a result of free will or choice." [Dictionary:The American Heritage Science Dictionary, Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000956 ! measurement of voluntary locomotion in an experimental apparatus created_by: JSmith creation_date: 2012-07-24T01:33:53Z [Term] id: CMO:0000958 name: amount of experiment time spent in a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "The total amount of time in an experiment that an organism or experimental subject spends in a distinct and specified area of an experimental apparatus." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, RGD:JRS] is_a: CMO:0000957 ! measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus created_by: JSmith creation_date: 2012-07-24T01:35:22Z [Term] id: CMO:0000959 name: percentage of experiment time spent in a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "The proportion of the total amount of time that an organism or experimental subject spends in an experimental apparatus which is spent in a distinct and specified area of that apparatus, expressed as a percentage." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0000957 ! measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus created_by: JSmith creation_date: 2012-07-24T01:37:12Z [Term] id: CMO:0000960 name: number of entries into a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "The total number of times during an experiment that an organism or experimental subject enters into a distinct and specified area of an experimental apparatus." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, RGD:JRS] is_a: CMO:0000957 ! measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus created_by: JSmith creation_date: 2012-07-24T01:37:34Z [Term] id: CMO:0000961 name: percentage of entries into a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "The proportion of the total number of entries into any area of an experimental apparatus in which an organism or experimental subject enters a distinct and specified area of the apparatus, expressed as a percentage." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0000957 ! measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus created_by: JSmith creation_date: 2012-07-24T01:37:54Z [Term] id: CMO:0000962 name: blood vessel lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a localized pathological change in structure of a blood vessel due to injury or disease; especially one that is circumscribed and well defined." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000077 ! blood vessel measurement created_by: JSmith creation_date: 2012-07-26T10:04:12Z [Term] id: CMO:0000963 name: calculated blood vessel diameter measurement namespace: Clinical_Measurement.ontology def: "A measurement of blood vessel diameter which has been normalized or adjusted by a mathematical process or computation." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000179 ! blood vessel diameter created_by: JSmith creation_date: 2012-07-26T12:15:46Z [Term] id: CMO:0000964 name: blood vessel wall thickness namespace: Clinical_Measurement.ontology is_a: CMO:0000077 ! blood vessel measurement created_by: JSmith creation_date: 2012-07-26T12:18:48Z [Term] id: CMO:0000965 name: calculated blood vessel wall thickness measurement namespace: Clinical_Measurement.ontology def: "A measurement of the depth of the wall of a blood vessel which has been normalized or adjusted by a mathematical process or computation" [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000964 ! blood vessel wall thickness created_by: JSmith creation_date: 2012-07-26T12:20:54Z [Term] id: CMO:0000966 name: artery wall thickness namespace: Clinical_Measurement.ontology def: "A measurement of the depth of the wall of an artery, one of the large blood vessels carrying blood in a direction away from the heart to the tissues." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000964 ! blood vessel wall thickness is_a: CMO:0000974 ! artery measurement created_by: JSmith creation_date: 2012-07-26T12:23:13Z [Term] id: CMO:0000967 name: calculated artery wall thickness measurement namespace: Clinical_Measurement.ontology def: "A measurement of the depth of the wall of an artery which has been normalized or adjusted by a mathematical process or computation. An artery is one of the large blood vessels carrying blood in a direction away from the heart to the tissues." [Mosby:Mosby's Medical Dictionary\, 8th Ed, RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000965 ! calculated blood vessel wall thickness measurement is_a: CMO:0000966 ! artery wall thickness created_by: JSmith creation_date: 2012-07-26T12:27:42Z [Term] id: CMO:0000968 name: artery diameter namespace: Clinical_Measurement.ontology is_a: CMO:0000179 ! blood vessel diameter is_a: CMO:0000974 ! artery measurement created_by: JSmith creation_date: 2012-07-26T12:32:00Z [Term] id: CMO:0000969 name: blood vessel inner diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of a blood vessel, passing through its center and ending on either side at the inner surface of the blood vessel wall." [RGD:JRS] synonym: "blood vessel lumen diameter" EXACT [] is_a: CMO:0000179 ! blood vessel diameter created_by: JSmith creation_date: 2012-07-26T12:39:26Z [Term] id: CMO:0000970 name: blood vessel outer diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of a blood vessel, passing through its center and ending on either side at the outer surface of the blood vessel wall." [RGD:JRS] is_a: CMO:0000179 ! blood vessel diameter created_by: JSmith creation_date: 2012-07-26T12:41:25Z [Term] id: CMO:0000971 name: artery inner diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of an artery, passing through its center and ending on either side at the inner surface of the blood vessel wall." [RGD:JRS] synonym: "artery lumen diameter" EXACT [] is_a: CMO:0000968 ! artery diameter is_a: CMO:0000969 ! blood vessel inner diameter created_by: JSmith creation_date: 2012-07-26T12:43:00Z [Term] id: CMO:0000972 name: artery outer diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of an artery, passing through its center and ending on either side at the outer surface of the blood vessel wall." [RGD:JRS] is_a: CMO:0000968 ! artery diameter is_a: CMO:0000970 ! blood vessel outer diameter created_by: JSmith creation_date: 2012-07-26T12:44:18Z [Term] id: CMO:0000973 name: calculated artery diameter measurement namespace: Clinical_Measurement.ontology def: "Measurement of the length of a line which crosses a transverse view of an artery, passing through its center and ending on either side at either the inner surface or outer surface of the blood vessel wall, which has been normalized or adjusted by a mathematical process or computation." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000963 ! calculated blood vessel diameter measurement is_a: CMO:0000968 ! artery diameter created_by: JSmith creation_date: 2012-07-26T12:48:55Z [Term] id: CMO:0000974 name: artery measurement namespace: Clinical_Measurement.ontology def: "Any measurement of one of the large blood vessels carrying blood in a direction away from the heart to the tissues." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000077 ! blood vessel measurement created_by: JSmith creation_date: 2012-07-26T12:57:08Z [Term] id: CMO:0000975 name: artery lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of any localized pathological change in structure of an artery, one of the large blood vessels carrying blood in a direction away from the heart to the tissues, due to injury or disease; especially one that is circumscribed and well defined." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000962 ! blood vessel lesion measurement is_a: CMO:0000974 ! artery measurement created_by: JSmith creation_date: 2012-07-26T12:59:52Z [Term] id: CMO:0000976 name: calculated artery lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement which has been normalized or adjusted by a mathematical process or computation of any localized pathological change in structure of an artery due to injury or disease; especially one that is circumscribed and well defined." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000975 ! artery lesion measurement created_by: JSmith creation_date: 2012-07-26T02:04:57Z [Term] id: CMO:0000977 name: calculated blood vessel lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement which has been normalized or adjusted by a mathematical process or computation of any localized pathological change in structure of a blood vessel due to injury or disease; especially one that is circumscribed and well defined." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000962 ! blood vessel lesion measurement created_by: JSmith creation_date: 2012-07-26T02:13:01Z [Term] id: CMO:0000978 name: blood vessel wall thickness as percentage of blood vessel inner diameter namespace: Clinical_Measurement.ontology def: "Ratio of the wall thickness (WT) of a blood vessel to inner diameter (ID) of that vessel at that location, expressed as a percentage, i.e. WT/ID x 100. This measurement is often used to assess stenosis, a pathological narrowing of a blood vessel." [RGD:JRS] synonym: "blood vessel stenosis measurement" RELATED [] synonym: "blood vessel wall thickness as percentage of blood vessel lumen diameter" EXACT [] is_a: CMO:0000963 ! calculated blood vessel diameter measurement is_a: CMO:0000965 ! calculated blood vessel wall thickness measurement is_a: CMO:0000977 ! calculated blood vessel lesion measurement created_by: JSmith creation_date: 2012-07-26T02:14:51Z [Term] id: CMO:0000979 name: artery wall thickness as percentage of artery inner diameter namespace: Clinical_Measurement.ontology def: "Ratio of the wall thickness (WT) of an artery to inner diameter (ID) of that artery at that location, expressed as a percentage, i.e. WT/ID x 100. This measurement is often used to assess stenosis, a pathological narrowing of a blood vessel." [RGD:JRS] synonym: "arterial stenosis measurement" RELATED [] synonym: "artery wall thickness as percentage of artery lumen diameter" EXACT [] is_a: CMO:0000967 ! calculated artery wall thickness measurement is_a: CMO:0000976 ! calculated artery lesion measurement is_a: CMO:0000978 ! blood vessel wall thickness as percentage of blood vessel inner diameter is_a: CMO:0000980 ! calculated artery inner diameter measurement created_by: JSmith creation_date: 2012-07-26T02:16:51Z [Term] id: CMO:0000980 name: calculated artery inner diameter measurement namespace: Clinical_Measurement.ontology def: "A measurement of the length of a line which crosses a transverse view of a blood vessel, passing through its center and ending on either side at the inner surface of the blood vessel wall, after that measurement has been normalized or adjusted by a mathematical process or computation." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000971 ! artery inner diameter is_a: CMO:0000973 ! calculated artery diameter measurement created_by: JSmith creation_date: 2012-07-26T02:25:16Z [Term] id: CMO:0000981 name: ventricle contraction measurement namespace: Clinical_Measurement.ontology def: "Any measurement of components of the periodic tightening and loosening of the muscles of a ventricle of the heart." [RGD:JRS] is_a: CMO:0000662 ! heart contraction measurement created_by: JSmith creation_date: 2012-07-26T03:24:53Z [Term] id: CMO:0000982 name: heart left ventricle end-diastolic diameter namespace: Clinical_Measurement.ontology def: "The diameter across the left ventricle of the heart at the end of diastole, that is, when the heart muscle is maximally relaxed, and usually corresponds to its largest diameter." [Wikipedia:http\://en.wikipedia.org/wiki/Ventricle_%28heart%29] synonym: "left ventricular end-diastolic dimension" RELATED [] synonym: "LVDD" RELATED [] synonym: "LVEDD" RELATED [] is_a: CMO:0000951 ! heart left ventricle morphological measurement created_by: JSmith creation_date: 2012-07-27T03:14:05Z [Term] id: CMO:0000983 name: heart left ventricle end-systolic diameter namespace: Clinical_Measurement.ontology def: "The diameter across the left ventricle of the heart at the end of systole, that is, when the heart muscle is maximally contracted, and usually corresponds to its smallest diameter." [Wikipedia:http\://en.wikipedia.org/wiki/Ventricle_%28heart%29] synonym: "left ventricular end-systolic dimension" RELATED [] synonym: "LVESD" RELATED [] synonym: "LVSD" RELATED [] is_a: CMO:0000951 ! heart left ventricle morphological measurement created_by: JSmith creation_date: 2012-07-27T03:32:16Z [Term] id: CMO:0000984 name: calculated heart left ventricle morphological measurement namespace: Clinical_Measurement.ontology def: "A measurement of the physical form or structure of the left ventricle of the heart which has been normalized or adjusted by a mathematical process or computation. The heart left ventricle is the lower chamber of the left side of the heart, which pumps oxygenated blood out through the aorta to all the tissues of the body." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed, RGD:JRS] is_a: CMO:0000951 ! heart left ventricle morphological measurement created_by: JSmith creation_date: 2012-07-27T03:42:40Z [Term] id: CMO:0000985 name: heart left ventricle fractional shortening namespace: Clinical_Measurement.ontology def: "A calculated measurement corresponding to the ratio or percent reduction in left ventricular diameter between end-diastole and end-systole. Can be calculated as the left ventricle end-diastolic diameter (LVDd) minus the left ventricle end-systolic diameter (LVSd) divided by the left ventricle end-diastolic diameter (LVDd) with the quotient multiplied by 100, i.e. FS = [(LVDd-LVSd)/LVDd] x 100" [Wikipedia:http\://en.wikipedia.org/wiki/Ventricle_%28heart%29] is_a: CMO:0000984 ! calculated heart left ventricle morphological measurement created_by: JSmith creation_date: 2012-07-27T03:51:33Z [Term] id: CMO:0000986 name: heart left ventricle ventral wall thickness namespace: Clinical_Measurement.ontology def: "The thickness or depth of the ventral/anterior wall of the left ventricle of the heart. The ventral wall is the portion of the muscle enclosing the ventricle which is farthest from the spine and closest to the chest wall of the organism." [PGA:Ultrasound_protocol, RGD:JRS] synonym: "heart left ventricle anterior wall thickness" RELATED [] is_a: CMO:0000951 ! heart left ventricle morphological measurement is_a: CMO:0000990 ! heart ventral wall thickness created_by: JSmith creation_date: 2012-07-27T04:11:09Z [Term] id: CMO:0000987 name: heart ventricle septal wall thickness namespace: Clinical_Measurement.ontology def: "The thickness or depth of the septal wall of the heart ventricles. The septal wall is the portion of the heart left ventricle ventral/anterior wall and right ventricle dorsal/posterior wall which is shared between the ventricles." [RGD:JRS] synonym: "heart interventricular septum thickness" RELATED [] synonym: "heart ventricle septum thickness" RELATED [] is_a: CMO:0000240 ! heart right ventricle dorsal wall thickness is_a: CMO:0000986 ! heart left ventricle ventral wall thickness created_by: JSmith creation_date: 2012-07-27T05:59:34Z [Term] id: CMO:0000988 name: heart left ventricle relative wall thickness namespace: Clinical_Measurement.ontology def: "A calculated measurement of left ventricular geometry and is calculated by dividing the end-diastolic diameter into 2x the posterior wall thickness, 2x the septal wall thickness or the sum of the posterior and septal wall thicknesses. It represents a measure of the wall thickness normalized to the size of the ventricle lumen." [Website:http\://circ.ahajournals.org/cgi/content/meeting_abstract/120/18_MeetingAbstracts/S883] is_a: CMO:0000984 ! calculated heart left ventricle morphological measurement is_a: CMO:0000993 ! heart ventricle relative wall thickness created_by: JSmith creation_date: 2012-07-27T06:00:34Z [Term] id: CMO:0000989 name: heart left ventricle end-diastolic relative wall thickness namespace: Clinical_Measurement.ontology def: "A calculated measurement of left ventricular geometry and is calculated by dividing the end-diastolic diameter into 2x the posterior wall thickness at end-diastole, 2x the septal wall thickness at end-diastole or the sum of the posterior and septal wall thicknesses at end-diastole. It represents a measure of the wall thickness normalized to the size of the ventricle lumen." [Website:http\://circ.ahajournals.org/cgi/content/meeting_abstract/120/18_MeetingAbstracts/S883] is_a: CMO:0000988 ! heart left ventricle relative wall thickness created_by: JSmith creation_date: 2012-07-27T06:15:29Z [Term] id: CMO:0000990 name: heart ventral wall thickness namespace: Clinical_Measurement.ontology def: "The thickness or depth of the ventral/anterior wall of the heart. The ventral wall is the portion of the heart muscle which is farthest from the spine and closest to the chest wall of the organism." [PGA:Ultrasound_protocol, RGD:JRS] synonym: "heart anterior wall thickness" RELATED [] is_a: CMO:0000236 ! heart wall thickness created_by: JSmith creation_date: 2012-07-30T10:15:23Z [Term] id: CMO:0000991 name: calculated heart wall thickness measurement namespace: Clinical_Measurement.ontology synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000236 ! heart wall thickness created_by: JSmith creation_date: 2012-07-30T10:31:58Z [Term] id: CMO:0000992 name: heart relative wall thickness namespace: Clinical_Measurement.ontology is_a: CMO:0000991 ! calculated heart wall thickness measurement created_by: JSmith creation_date: 2012-07-30T11:04:28Z [Term] id: CMO:0000993 name: heart ventricle relative wall thickness namespace: Clinical_Measurement.ontology is_a: CMO:0000992 ! heart relative wall thickness created_by: JSmith creation_date: 2012-07-30T11:05:55Z [Term] id: CMO:0000994 name: mean velocity of circumferential fiber shortening namespace: Clinical_Measurement.ontology def: "The extent of shortening of the minor internal circumference (at the midpoint of the long axis) between end-diastole and end-systole, divided by the time required for shortening." [PMID:5097436] synonym: "mean circumferential fiber shortening rate" EXACT [] synonym: "mean VCF" RELATED [] is_a: CMO:0000662 ! heart contraction measurement created_by: JSmith creation_date: 2012-07-30T01:25:59Z [Term] id: CMO:0000995 name: alimentary/gastrointestinal measurement namespace: Clinical_Measurement.ontology def: "Any measurement to assess the morphological or physiological state of the alimentary/gastrointestinal tract, that is, the system of organs within multicellular animals that takes in food, digests it to extract energy and nutrients, and expels the remaining waste. The major functions of the alimentary/GI/digestive tract are ingestion, digestion, absorption, and defecation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-07-30T01:37:54Z [Term] id: CMO:0000996 name: heart right ventricle ventral wall thickness namespace: Clinical_Measurement.ontology def: "The thickness or depth of the ventral/anterior wall of the right ventricle of the heart. The ventral wall is the portion of the muscle enclosing the ventricle which is farthest from the spine and closest to the chest wall of the organism." [PGA:Ultrasound_protocol, RGD:JRS] synonym: "heart right ventricle anterior wall thickness" RELATED [] is_a: CMO:0000990 ! heart ventral wall thickness created_by: JSmith creation_date: 2012-07-30T02:57:57Z [Term] id: CMO:0000997 name: defecation measurement namespace: Clinical_Measurement.ontology def: "Any measurement related to the elimination of wastes and undigested food, as feces, from the rectum." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000995 ! alimentary/gastrointestinal measurement created_by: JSmith creation_date: 2012-07-30T03:50:37Z [Term] id: CMO:0000998 name: defecation rate namespace: Clinical_Measurement.ontology def: "The number of times an organism passes feces or the number of pieces of fecal matter excreted within a specified period of time." [RGD:JRS] is_a: CMO:0000997 ! defecation measurement created_by: JSmith creation_date: 2012-07-30T04:03:18Z [Term] id: CMO:0000999 name: urine albumin to low molecular weight protein ratio namespace: Clinical_Measurement.ontology def: "The ratio of the amount of albumin in the urine, or excreted into the urine in a specified period of time to the amount of low molecular weight proteins in the urine, or excreted into the urine in a specified period of time." [PMID:17167120] is_a: CMO:0000949 ! calculated urine protein level created_by: JSmith creation_date: 2012-07-30T05:22:21Z [Term] id: CMO:0001000 name: superficial glomerulus count namespace: Clinical_Measurement.ontology def: "Count of the number of glomeruli located in the superficial layer of the renal cortex, the cortex corticis. Glomeruli are the tufts of capillaries each situated within a Bowman's capsule at the end of a renal tubule in the vertebrate kidney that filter waste products from the blood and thus initiate urine formation." [Dictionary:The American Heritage Medical Dictionary, PMID:3352156] synonym: "superficial glomeruli count" EXACT [] is_a: CMO:0000536 ! glomerulus count created_by: JSmith creation_date: 2012-08-02T01:00:46Z [Term] id: CMO:0001001 name: count of superficial glomeruli directly contacting the kidney surface namespace: Clinical_Measurement.ontology def: "Count of the number of glomeruli located in the superficial layer of the renal cortex, the cortex corticis, and directly in contact with the surface of the kidney, i.e. the renal capsule. Glomeruli are the tufts of capillaries each situated within a Bowman's capsule at the end of a renal tubule in the vertebrate kidney that filter waste products from the blood and thus initiate urine formation." [Dictionary:The American Heritage Medical Dictionary, PMID:6602356] synonym: "surface glomeruli count" RELATED [] is_a: CMO:0001000 ! superficial glomerulus count created_by: JSmith creation_date: 2012-08-02T01:14:28Z [Term] id: CMO:0001002 name: count of superficial glomeruli not directly contacting the kidney surface namespace: Clinical_Measurement.ontology def: "Count of the number of glomeruli located in the superficial layer of the renal cortex, the cortex corticis but without any direct contact with the surface of the kidney, i.e. the renal capsule. Glomeruli are the tufts of capillaries each situated within a Bowman's capsule at the end of a renal tubule in the vertebrate kidney that filter waste products from the blood and thus initiate urine formation." [Dictionary:The American Heritage Medical Dictionary, PMID:6602356] is_a: CMO:0001000 ! superficial glomerulus count created_by: JSmith creation_date: 2012-08-02T01:15:32Z [Term] id: CMO:0001003 name: blood hormone level namespace: Clinical_Measurement.ontology def: "Measurement of the amount in blood of any complex chemical substance produced in one part or organ of the body that initiates or regulates the activity of an organ or a group of cells in another part of the body." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000023 ! blood chemistry measurement created_by: JSmith creation_date: 2012-08-02T03:51:38Z [Term] id: CMO:0001004 name: blood steroid hormone level namespace: Clinical_Measurement.ontology def: "Measurement of the amount in blood of an organic compound the basis of which is a characteristic arrangement of four fused cycloalkane rings, i.e. three cyclohexane rings and one cyclopentane ring, that is produced in one part or organ of the body and initiates or regulates the activity of an organ or a group of cells in another part of the body." [Mosby:Mosby's Medical Dictionary\, 8th Ed, Wikipedia:http\://en.wikipedia.org/wiki/Steroid] is_a: CMO:0001003 ! blood hormone level created_by: JSmith creation_date: 2012-08-02T04:07:52Z [Term] id: CMO:0001005 name: blood monoamine hormone level namespace: Clinical_Measurement.ontology def: "Measurement of the amount in blood of an amine compound containing one amino group and derived from an aromatic amino acid, that is produced in one part or organ of the body and initiates or regulates the activity of an organ or a group of cells in another part of the body." [Dictionary:The American Heritage Medical Dictionary, Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0001003 ! blood hormone level created_by: JSmith creation_date: 2012-08-02T04:35:15Z [Term] id: CMO:0001006 name: blood epinephrine level namespace: Clinical_Measurement.ontology def: "Measurement of the amount of epinephrine, a catecholamine which can act as a neurotransmitter, a stress hormone, a stimulator of the sympathetic nervous system and a vasoconstrictor, in a specified volume of blood." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "blood adrenaline level" EXACT [] is_a: CMO:0001005 ! blood monoamine hormone level created_by: JSmith creation_date: 2012-08-02T04:41:29Z [Term] id: CMO:0001007 name: serum epinephrine level namespace: Clinical_Measurement.ontology def: "The amount of epinephrine, a catecholamine which can act as a neurotransmitter, a stress hormone, a stimulator of the sympathetic nervous system and a vasoconstrictor,\nfound in a specific volume of serum, the clear liquid that separates from blood after it has clotted completely, i.e. blood plasma from which fibrinogen has been removed." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "serum adrenaline level" EXACT [] is_a: CMO:0001006 ! blood epinephrine level created_by: JSmith creation_date: 2012-08-02T05:03:30Z [Term] id: CMO:0001008 name: plasma epinephrine level namespace: Clinical_Measurement.ontology def: "The amount of epinephrine, a catecholamine which can act as a neurotransmitter, a stress hormone, a stimulator of the sympathetic nervous system and a vasoconstrictor,\nfound in a specific volume of plasma, the fluid portion of the blood in which the particulate components are suspended." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "plasma adrenaline level" EXACT [] is_a: CMO:0001006 ! blood epinephrine level created_by: JSmith creation_date: 2012-08-02T05:07:31Z [Term] id: CMO:0001009 name: blood norepinephrine level namespace: Clinical_Measurement.ontology def: "Measurement of the amount of norepinephrine, a catecholamine which can act as a neurotransmitter, a stress hormone and a vasoconstrictor, in a specified volume of blood." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "blood noradrenaline level" EXACT [] is_a: CMO:0001005 ! blood monoamine hormone level created_by: JSmith creation_date: 2012-08-02T05:47:58Z [Term] id: CMO:0001010 name: plasma norepinephrine level namespace: Clinical_Measurement.ontology def: "The amount of norepinephrine, a catecholamine which can act as a neurotransmitter, a stress hormone and a vasoconstrictor, found in a specific volume of plasma, the fluid portion of the blood in which the particulate components are suspended." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "plasma noradrenaline level" EXACT [] is_a: CMO:0001009 ! blood norepinephrine level created_by: JSmith creation_date: 2012-08-02T05:51:48Z [Term] id: CMO:0001011 name: serum norepinephrine level namespace: Clinical_Measurement.ontology def: "The amount of norepinephrine, a catecholamine which can act as a neurotransmitter, a stress hormone and a vasoconstrictor, found in a specific volume of serum, the clear liquid that separates from blood after it has clotted completely, i.e. blood plasma from which fibrinogen has been removed." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "serum noradrenaline level" EXACT [] is_a: CMO:0001009 ! blood norepinephrine level created_by: JSmith creation_date: 2012-08-02T05:53:23Z [Term] id: CMO:0001012 name: infarction volume namespace: Clinical_Measurement.ontology is_a: CMO:0000683 ! infarction size created_by: JSmith creation_date: 2012-08-03T06:03:12Z [Term] id: CMO:0001013 name: brain infarction volume namespace: Clinical_Measurement.ontology def: "Measurement of the size of the three dimensional space occupied by an area of necrotic tissue in the brain resulting from a reduction or obstruction of the oxygen supply to the brain." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "cerebral infarction volume" RELATED [] is_a: CMO:0001012 ! infarction volume is_a: CMO:0001014 ! brain infarction size created_by: JSmith creation_date: 2012-08-03T06:04:09Z [Term] id: CMO:0001014 name: brain infarction size namespace: Clinical_Measurement.ontology def: "Measurement of the size of an area of necrotic tissue in the brain resulting from a reduction or obstruction of the oxygen supply to the brain." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "cerebral infarction size" RELATED [] is_a: CMO:0000681 ! brain infarction measurement is_a: CMO:0000683 ! infarction size created_by: JSmith creation_date: 2012-08-03T06:04:35Z [Term] id: CMO:0001015 name: heart infarction volume namespace: Clinical_Measurement.ontology is_a: CMO:0000684 ! heart infarction size is_a: CMO:0001012 ! infarction volume created_by: JSmith creation_date: 2012-08-03T06:05:33Z [Term] id: CMO:0001016 name: change in diastolic blood pressure namespace: Clinical_Measurement.ontology def: "Measurement of any change or difference in the diastolic blood pressure between two points or two conditions. The diastolic pressure is the minimum arterial pressure within the cardiac cycle, usually at the point at which the heart is in a state of relaxation and expansion. This is the time when the ventricles fill with blood." [Berne and Levy:Berne and Levy Physiology\, 6th Ed] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000005 ! diastolic blood pressure is_a: CMO:0000008 ! calculated blood pressure created_by: JSmith creation_date: 2012-08-03T06:17:05Z [Term] id: CMO:0001017 name: percent change in diastolic blood pressure namespace: Clinical_Measurement.ontology def: "The relative difference in the diastolic blood pressure between two points or two conditions, expressed as a percentage. The diastolic pressure is the minimum arterial pressure within the cardiac cycle, usually at the point at which the heart is in a state of relaxation and expansion. This is the time when the ventricles fill with blood." [Berne and Levy:Berne and Levy Physiology\, 6th Ed] is_a: CMO:0001016 ! change in diastolic blood pressure created_by: JSmith creation_date: 2012-08-03T06:19:27Z [Term] id: CMO:0001018 name: change in cell membrane potential namespace: Clinical_Measurement.ontology def: "Measurement of any change in the difference in electrical polarization or charge between two sides of a cell membrane or cell wall over time or after a change in conditions." [Mosby:Mosby's Medical Dictionary\, 8th Ed] synonym: "change in transmembrane potential" RELATED [] synonym: "depolarization" NARROW [] synonym: "hyperpolarization" NARROW [] is_a: CMO:0000231 ! cell membrane potential created_by: JSmith creation_date: 2012-08-07T04:51:32Z [Term] id: CMO:0001019 name: absolute change in left ventricle systolic blood pressure namespace: Clinical_Measurement.ontology def: "Calculated measurement of a difference in the pressure within the heart left ventricle at the point of maximal contraction, when the blood is forced from the left ventricle into the aorta, between two points in time or two conditions expressed as the result of the subtraction in and of itself without comparison by ratio with another quantity." [Dictionary:Collins Online English Dictionary, Mosby:Mosby's Dental Dictionary\, 2nd Ed] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0000753 ! change in left ventricle systolic blood pressure created_by: JSmith creation_date: 2012-08-13T01:16:23Z [Term] id: CMO:0001020 name: mortality/survival measurement namespace: Clinical_Measurement.ontology def: "Any measurement having to do with quantitative measures of mortality, death, fatality or survival of an individual or study population." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000000 ! clinical measurement created_by: jsmith creation_date: 2012-08-21T11:03:55Z [Term] id: CMO:0001021 name: survival measurement namespace: Clinical_Measurement.ontology def: "Any quantitative measurement of survival of or in an individual or study population." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0001020 ! mortality/survival measurement created_by: jsmith creation_date: 2012-08-21T11:43:12Z [Term] id: CMO:0001022 name: mortality measurement namespace: Clinical_Measurement.ontology def: "Any quantitative measurement of death, mortality or fatality in an individual or study population." [RGD:JRS] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0001020 ! mortality/survival measurement created_by: jsmith creation_date: 2012-08-21T11:43:30Z [Term] id: CMO:0001023 name: ratio of deaths to total study population during a period of time namespace: Clinical_Measurement.ontology def: "A measure of the total number of deaths occurring during a specified period of time within a study population divided by the total number of individuals in the study population." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "death incidence measurement as a ratio" RELATED [] synonym: "death rate" RELATED [] synonym: "mortality rate" RELATED [] is_a: CMO:0001022 ! mortality measurement created_by: jsmith creation_date: 2012-08-21T11:51:52Z [Term] id: CMO:0001024 name: percentage of deaths in a study population during a period of time namespace: Clinical_Measurement.ontology def: "The total number of deaths occurring during a specified period of time within a study population divided by the total number of individuals in the study population, expressed as a percentage." [Wikipedia:http\://en.wikipedia.org/wiki/Mortality_rate] synonym: "death incidence measurement as percent" RELATED [] synonym: "death rate" RELATED [] synonym: "mortality rate" RELATED [] is_a: CMO:0001022 ! mortality measurement created_by: jsmith creation_date: 2012-08-21T12:16:52Z [Term] id: CMO:0001025 name: pituitary tumor measurement namespace: Clinical_Measurement.ontology def: "Measurement of an abnormal growth of tissue in the pituitary gland resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000341 ! tumor measurement is_a: CMO:0001034 ! pituitary tumorous lesion measurement created_by: jsmith creation_date: 2012-08-21T12:51:37Z [Term] id: CMO:0001026 name: time to pituitary tumor formation, post insult namespace: Clinical_Measurement.ontology def: "The amount of time to the first discernible appearance of tumor in the pituitary gland following the administration of a tumor causing agent." [MS:MS] synonym: "pituitary tumor latency measurement" RELATED [] synonym: "pituitary tumor latency period" RELATED [] synonym: "pituitary tumor latent period" RELATED [] is_a: CMO:0001025 ! pituitary tumor measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001027 name: pituitary tumor growth rate namespace: Clinical_Measurement.ontology def: "The change is size between two points in time for a tumor found within the pituitary gland." [MS:MS] is_a: CMO:0001025 ! pituitary tumor measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001028 name: pituitary tumor incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "A measurement in which the number of individuals in a study population displaying one or more tumors of the pituitary gland at a point in time or developing such growths within a determined period of time, are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000927 ! tumor incidence/prevalence measurement is_a: CMO:0001025 ! pituitary tumor measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001029 name: percentage of study population developing pituitary tumors during a period of time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which develop new instances of pituitary gland tumors during a certain period compared to the total number of individuals in the study population, expressed as a percentage. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "pituitary tumor incidence" RELATED [] is_a: CMO:0001028 ! pituitary tumor incidence/prevalence measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001030 name: percentage of study population displaying pituitary tumors at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display tumors of the pituitary gland compared to the total number of individuals in the study population, expressed as a percentage. A tumor is an abnormal growth of tissue resulting from uncontrolled, progressive multiplication of cells and serving no physiological function." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "pituitary tumor prevalence" RELATED [] is_a: CMO:0001028 ! pituitary tumor incidence/prevalence measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001031 name: pituitary tumor number namespace: Clinical_Measurement.ontology def: "The number of tumors found within the pituitary gland." [MS:MS] is_a: CMO:0001025 ! pituitary tumor measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001032 name: pituitary tumor weight namespace: Clinical_Measurement.ontology def: "The weight of a tumor found within a pituitary gland." [MS:MS] is_a: CMO:0001025 ! pituitary tumor measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001033 name: pituitary tumor diameter namespace: Clinical_Measurement.ontology def: "The length of a transverse line moving from side to side through the center of a tumor located in the pituitary gland." [Dorland:Dorland's Illustrated Medical Dictionary] is_a: CMO:0001025 ! pituitary tumor measurement created_by: jsmith creation_date: 2012-08-21T12:56:51Z [Term] id: CMO:0001034 name: pituitary tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a pituitary gland lesion which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. The pituitary gland is the gland located at the base of the brain in vertebrates that produces a number of hormones, including those that regulate growth and reproductive functions. Tumorous lesions include both tumors and hyperplastic lesions composed of histologically normal cells." [Dictionary:Gale Encyclopedia of Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000859 ! organ tumorous lesion measurement created_by: jsmith creation_date: 2012-08-21T04:09:27Z [Term] id: CMO:0001035 name: head temperature namespace: Clinical_Measurement.ontology def: "Temperature measured at the surface of or within the head of an experimental subject. Because the temperature of the head/brain can influence neurological measurements, head temperature is or can be considered to be distinct from core body temperature." [PMID:10595709, RGD:JRS] synonym: "cranial temperature" RELATED [] is_a: CMO:0000015 ! body temperature created_by: jsmith creation_date: 2012-08-23T03:27:50Z [Term] id: CMO:0001036 name: core body temperature namespace: Clinical_Measurement.ontology def: "The temperature of the internal tissues and organs of the body." [Mosby:Mosby's Dental Dictionary\, 2nd Ed] synonym: "core temperature" RELATED [] is_a: CMO:0000015 ! body temperature created_by: jsmith creation_date: 2012-08-23T04:06:16Z [Term] id: CMO:0001037 name: time to first movement outside a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "The latency period spent by an organism or experimental subject in the initial occupied space before moving to a different space in an experimental apparatus." [RGD:JRS, RGD:SL] synonym: "initial amount of time spent in a discrete space in an experimental apparatus before moving to a different space" RELATED [] is_a: CMO:0000957 ! measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus created_by: jsmith creation_date: 2012-08-23T04:24:11Z [Term] id: CMO:0001038 name: stretched-attend posture measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the movement of an experimental subject or organism during which the hind legs remain stationary while the body is stretched forward with head raised." [Website:https\://workspace.stanford.edu/sites/mousebehavior/Wiki%20Pages/Investigate%20-%20stretched%20attend.aspx] synonym: "SAP measurement" RELATED [] is_a: CMO:0000954 ! voluntary body movement measurement created_by: jsmith creation_date: 2012-08-23T04:39:54Z [Term] id: CMO:0001039 name: number of stretched-attend posture movements namespace: Clinical_Measurement.ontology def: "Measurement of the number of times an experimental subject or organism displays a stretched-attend posture movement during an experimental time period. The stretched-attend posture is one during which the hind legs remain stationary while the body is stretched forward with head raised." [Website:https\://workspace.stanford.edu/sites/mousebehavior/Wiki%20Pages/Investigate%20-%20stretched%20attend.aspx] is_a: CMO:0001038 ! stretched-attend posture measurement created_by: jsmith creation_date: 2012-08-23T04:51:04Z [Term] id: CMO:0001040 name: number of prompted entries into a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "The total number of times during an experiment that an organism or experimental subject enters into a distinct and specified area of an experimental apparatus in response to a specific external inducement, enticement or encouragement." [Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0000960 ! number of entries into a discrete space in an experimental apparatus created_by: jsmith creation_date: 2012-08-23T04:56:50Z [Term] id: CMO:0001041 name: number of unprompted entries into a discrete space in an experimental apparatus namespace: Clinical_Measurement.ontology def: "The total number of times during an experiment that an organism or experimental subject enters into a distinct and specified area of an experimental apparatus without external inducement, enticement or encouragement." [Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0000960 ! number of entries into a discrete space in an experimental apparatus created_by: jsmith creation_date: 2012-08-23T04:57:59Z [Term] id: CMO:0001042 name: measurement of voluntary immobility namespace: Clinical_Measurement.ontology def: "Any measurement of a movement or quantifiable behavior which does not involve the movement of the organism from one place to another but which originated with or was undertaken, controlled, or accomplished as a result of that organism's free will or choice." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "measurement of freeze behavior" RELATED [] synonym: "measurement of freezing behavior" RELATED [] is_a: CMO:0000954 ! voluntary body movement measurement created_by: jsmith creation_date: 2012-08-27T10:19:00Z [Term] id: CMO:0001043 name: amount of time spent in voluntary immobility namespace: Clinical_Measurement.ontology def: "Measurement of the total amount of experiment time that an organism or experimental subject spends frozen, that is, not moving from one place or position to another, when such behavior originated with or was undertaken, controlled, or accomplished as a result of that organism's free will or choice." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "amount of time spent frozen" RELATED [] synonym: "amount of time spent in freeze behavior" RELATED [] synonym: "amount of time spent in freezing behavior" RELATED [] is_a: CMO:0001042 ! measurement of voluntary immobility created_by: jsmith creation_date: 2012-08-27T10:27:44Z [Term] id: CMO:0001044 name: percent of time spent in voluntary immobility namespace: Clinical_Measurement.ontology def: "Calculated measurement of the relative amount of experiment time that an organism or experimental subject spends frozen, that is, not moving from one place or position to another, when such behavior originated with or was undertaken, controlled, or accomplished as a result of that organism's free will or choice, expressed as a percentage." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "percent of time spent frozen" RELATED [] synonym: "percent of time spent in freeze behavior" RELATED [] synonym: "percent of time spent in freezing behavior" RELATED [] is_a: CMO:0001042 ! measurement of voluntary immobility created_by: jsmith creation_date: 2012-08-27T10:28:27Z [Term] id: CMO:0001045 name: number of periods of voluntary immobility namespace: Clinical_Measurement.ontology def: "A count of the number of discrete intervals during which an organism or experimental subject is frozen, that is, not moving from one place or position to another, when such behavior originated with or was undertaken, controlled, or accomplished as a result of that organism's free will or choice." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "number of periods frozen" RELATED [] synonym: "number of periods of freeze behavior" RELATED [] synonym: "number of periods of freezing behavior" RELATED [] is_a: CMO:0001042 ! measurement of voluntary immobility created_by: jsmith creation_date: 2012-08-27T10:28:46Z [Term] id: CMO:0001046 name: experimental autoimmune encephalomyelitis incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "Any measurement in which the number of individuals in a study population that display experimental autoimmune encephalomyelitis (EAE) at a point in time or develop EAE within a determined period of time are compared to the total number of individuals in the study population. Often expressed as a percentage but could be expressed as a ratio. EAE is an animal model of brain inflammation in which inflammation is induced through immunization of the animal with central nervous system antigens or by the passive transfer of autoreactive T cells." [Wikipedia:http\://en.wikipedia.org/wiki/Experimental_autoimmune_encephalomyelitis] synonym: "EAE incidence/prevalence measurement" EXACT [] synonym: "experimental allergic encephalomyelitis incidence/prevalence measurement" EXACT [] is_a: CMO:0000926 ! disease incidence/prevalence measurement created_by: jsmith creation_date: 2012-08-27T11:03:49Z [Term] id: CMO:0001047 name: percentage of study population developing experimental autoimmune encephalomyelitis during a period of time namespace: Clinical_Measurement.ontology def: "The number of new cases of experimental autoimmune encephalomyelitis (EAE) appearing in a study population during a certain period compared to the total number of individuals in the study population, expressed as a percentage. EAE is an animal model of brain inflammation in which inflammation is induced through immunization of the animal with central nervous system antigens or by the passive transfer of autoreactive T cells." [Wikipedia:http\://en.wikipedia.org/wiki/Experimental_autoimmune_encephalomyelitis] synonym: "EAE incidence" RELATED [] synonym: "experimental allergic encephalomyelitis incidence" RELATED [] synonym: "experimental autoimmune encephalomyelitis incidence" RELATED [] synonym: "percentage of study population developing experimental allergic encephalomyelitis during a period of time" EXACT [] is_a: CMO:0001046 ! experimental autoimmune encephalomyelitis incidence/prevalence measurement created_by: jsmith creation_date: 2012-08-27T11:11:03Z [Term] id: CMO:0001048 name: percentage of study population displaying experimental autoimmune encephalomyelitis at a point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display experimental autoimmune encephalomyelitis (EAE) at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage. EAE is an animal model of brain inflammation in which inflammation is induced through immunization of the animal with central nervous system antigens or by the passive transfer of autoreactive T cells." [Wikipedia:http\://en.wikipedia.org/wiki/Experimental_autoimmune_encephalomyelitis] synonym: "EAE prevalence" RELATED [] synonym: "experimental allergic encephalomyelitis prevalence" RELATED [] synonym: "experimental autoimmune encephalomyelitis prevalence" RELATED [] synonym: "percentage of study population displaying experimental allergic encephalomyelitis at a point in time" EXACT [] is_a: CMO:0001046 ! experimental autoimmune encephalomyelitis incidence/prevalence measurement created_by: jsmith creation_date: 2012-08-27T11:18:10Z [Term] id: CMO:0001049 name: pancreas measurement namespace: Clinical_Measurement.ontology def: "Any measurement, morphological or physiological, involving the pancreas or any part thereof. The pancreas is the elongated, racemose gland containing both endocrine and exocrine elements which secretes hormones such as insulin and glucagon internally and digestive enzymes externally." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000669 ! organ measurement created_by: jsmith creation_date: 2012-08-28T11:16:36Z [Term] id: CMO:0001050 name: pancreatic islet measurement namespace: Clinical_Measurement.ontology def: "Any measurement, morphological or physiological, involving one or more pancreatic islets, i.e. islets of Langerhans, the endocrine, hormone-producing portion of the pancreas." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] synonym: "endocrine pancreas measurement" RELATED [] synonym: "island of Langerhans measurement" EXACT [] synonym: "islet of Langerhans measurement" EXACT [] is_a: CMO:0001049 ! pancreas measurement is_a: CMO:0001053 ! endocrine gland measurement created_by: jsmith creation_date: 2012-08-28T11:29:21Z [Term] id: CMO:0001051 name: exocrine pancreas measurement namespace: Clinical_Measurement.ontology def: "Any measurement, morphological or physiological, involving the exocrine gland portion of the pancreas, that is, the elongated, racemose gland which secretes digestive enzymes into the intestine." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000784 ! exocrine gland measurement is_a: CMO:0001049 ! pancreas measurement created_by: jsmith creation_date: 2012-08-28T11:33:21Z [Term] id: CMO:0001052 name: pancreatic islet morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of one or more pancreatic islets, i.e. islets of Langerhans, the endocrine, hormone-producing portion of the pancreas." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000332 ! pancreas morphological measurement is_a: CMO:0001050 ! pancreatic islet measurement created_by: jsmith creation_date: 2012-08-28T11:38:12Z [Term] id: CMO:0001053 name: endocrine gland measurement namespace: Clinical_Measurement.ontology def: "Any measurement of an endocrine gland, that is, a ductless gland that produces and secretes hormones directly into the blood or lymph." [Mosby:Mosby's Medical Dictionary\, 8th Ed] is_a: CMO:0000783 ! endocrine/exocrine system measurement created_by: jsmith creation_date: 2012-08-28T11:44:36Z [Term] id: CMO:0001054 name: pancreatic islet area namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through a single pancreatic islet, or a measurement of the total area occupied by pancreatic islets in a cross-section of the pancreas. The pancreatic islets are the irregular microscopic structures scattered throughout the pancreas and comprising its endocrine portion." [Dictionary:Webster's New World College Dictionary\, 4th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001052 ! pancreatic islet morphological measurement created_by: jsmith creation_date: 2012-08-28T11:49:51Z [Term] id: CMO:0001055 name: single pancreatic islet area namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through a single pancreatic islet, one of the irregular microscopic structures scattered throughout the pancreas and comprising its endocrine portion." [Dictionary:Webster's New World College Dictionary\, 4th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "single islet of Langerhans area" EXACT [] is_a: CMO:0001054 ! pancreatic islet area created_by: jsmith creation_date: 2012-08-31T11:24:34Z [Term] id: CMO:0001056 name: total area occupied by pancreatic islets namespace: Clinical_Measurement.ontology def: "A measurement of the total area occupied by pancreatic islets in a cross-section of the pancreas. The pancreatic islets are the irregular microscopic structures scattered throughout the pancreas and comprising its endocrine portion." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "total area occupied by islets of Langerhans" EXACT [] is_a: CMO:0001054 ! pancreatic islet area created_by: jsmith creation_date: 2012-08-31T11:25:32Z [Term] id: CMO:0001057 name: calculated pancreatic islet area namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through a single pancreatic islet, or a measurement of the total area occupied by pancreatic islets in a cross-section of the pancreas\nwhich has been normalized or adjusted by a mathematical process or computation" [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dictionary:Webster's New World College Dictionary\, 4th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "calculated islet of Langerhans area" EXACT [] is_a: CMO:0001054 ! pancreatic islet area created_by: jsmith creation_date: 2012-08-31T11:34:32Z [Term] id: CMO:0001058 name: pancreatic islet area as percentage of total pancreatic area namespace: Clinical_Measurement.ontology def: "A calculated value in which the area of a cross-section of the pancreas which is occupied by pancreatic islets is presented as a percentage of the total area of the pancreas cross-section." [Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0001056 ! total area occupied by pancreatic islets is_a: CMO:0001057 ! calculated pancreatic islet area created_by: jsmith creation_date: 2012-08-31T11:40:57Z [Term] id: CMO:0001059 name: pancreatic islet area to total pancreatic area ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the area of a cross-section of the pancreas which is occupied by pancreatic islets is divided by the total area of the pancreas cross-section and presented as a ratio thus normalizing it to the size of the pancreas." [Dictionary:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001056 ! total area occupied by pancreatic islets is_a: CMO:0001057 ! calculated pancreatic islet area created_by: jsmith creation_date: 2012-08-31T12:21:57Z [Term] id: CMO:0001060 name: pancreatic islet beta cell area namespace: Clinical_Measurement.ontology def: "The area of, that is, the extent of a two-dimensional surface of or plane through, the beta cells in a pancreatic islet. A beta cell is a type of basophilic cell that makes up most of the bulk of the pancreatic islets (i.e. the islets of Langerhans) and secretes insulin." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "islet of Langerhans beta cell area" EXACT [] synonym: "pancreatic islet beta-cell area" EXACT [] is_a: CMO:0001055 ! single pancreatic islet area created_by: jsmith creation_date: 2012-08-31T12:30:49Z [Term] id: CMO:0001061 name: calculated pancreatic islet beta cell area namespace: Clinical_Measurement.ontology def: "Any measurement of beta cell area which has been normalized or adjusted by a mathematical process or computation. A beta cell is a type of basophilic cell that makes up most of the bulk of the pancreatic islets (i.e. the islets of Langerhans) and secretes insulin." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001060 ! pancreatic islet beta cell area created_by: jsmith creation_date: 2012-08-31T12:39:44Z [Term] id: CMO:0001062 name: beta cell area as percentage of total pancreatic islet area namespace: Clinical_Measurement.ontology def: "A calculated value in which the area occupied by beta cells is presented as a percentage of the total area of the pancreatic islet. A beta cell is a type of basophilic cell that makes up most of the bulk of the pancreatic islets (i.e. the islets of Langerhans) and secretes insulin." [Dictionary:The Online American Heritage Dictionary of the English Language, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "beta cell area as percentage of total islet of Langerhans area" EXACT [] is_a: CMO:0001061 ! calculated pancreatic islet beta cell area created_by: jsmith creation_date: 2012-08-31T12:47:28Z [Term] id: CMO:0001063 name: beta cell area to total pancreatic islet area ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the area occupied by beta cells is divided by the total area of the pancreatic islet and presented as a ratio thus normalizing it to the size of the pancreatic islet(s). A beta cell is a type of basophilic cell that makes up most of the bulk of the pancreatic islets (i.e. the islets of Langerhans) and secretes insulin." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "ratio of beta cell area to total islet of Langerhans area" EXACT [] is_a: CMO:0001061 ! calculated pancreatic islet beta cell area created_by: jsmith creation_date: 2012-08-31T12:48:14Z [Term] id: CMO:0001064 name: liver measurement namespace: Clinical_Measurement.ontology def: "Any measurement, morphological or physiological, involving the liver or any part thereof. The liver is the large, dark-red organ located in the cranial portion of the abdomen of vertebrates, just behind or below the diaphragm, the functions of which include storage and filtration of blood; secretion of bile; detoxification of noxious substances; conversion of sugars into glycogen; synthesis and breakdown of fats and temporary storage of fatty acids; and synthesis of serum proteins." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000086 ! liver/biliary measurement is_a: CMO:0000669 ! organ measurement created_by: jsmith creation_date: 2012-09-04T11:02:27Z [Term] id: CMO:0001065 name: liver lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion in the liver, the large, dark-red organ located in the cranial portion of the abdomen of vertebrates, just behind or below the diaphragm, that secretes bile and is active in the formation of certain blood proteins, in the metabolism of carbohydrates, fats, and proteins and in the detoxification of noxious substances. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic lesion measurement" RELATED [] is_a: CMO:0000677 ! organ lesion measurement is_a: CMO:0001064 ! liver measurement created_by: jsmith creation_date: 2012-09-04T11:34:49Z [Term] id: CMO:0001066 name: liver non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a liver lesion which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic non-tumorous lesion measurement" RELATED [] is_a: CMO:0000860 ! organ non-tumorous lesion measurement is_a: CMO:0001065 ! liver lesion measurement created_by: jsmith creation_date: 2012-09-04T11:42:51Z [Term] id: CMO:0001067 name: liver tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a liver lesion which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic tumorous lesion measurement" RELATED [] is_a: CMO:0000859 ! organ tumorous lesion measurement is_a: CMO:0001065 ! liver lesion measurement created_by: jsmith creation_date: 2012-09-04T11:43:18Z [Term] id: CMO:0001068 name: liver tumorous lesion number namespace: Clinical_Measurement.ontology def: "The number of tumorous lesions in or on the surface of the liver, or in a specified section of the liver, the large, highly vascularized organ located in the abdomen of vertebrates that secretes bile and is active in the formation of certain blood proteins, in the metabolism of carbohydrates, fats, and proteins and in the detoxification of noxious substances. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors, preneoplastic lesions, and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic tumorous lesion number" RELATED [] is_a: CMO:0001067 ! liver tumorous lesion measurement created_by: jsmith creation_date: 2012-09-04T01:02:38Z [Term] id: CMO:0001069 name: liver tumorous lesion size measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the size of an individual tumorous lesion in the liver, or of the amount of the liver occupied by tumorous lesions. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic tumorous lesion size measurement" RELATED [] is_a: CMO:0001067 ! liver tumorous lesion measurement created_by: jsmith creation_date: 2012-09-04T01:04:22Z [Term] id: CMO:0001070 name: liver tumorous lesion area measurement namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the liver, or a measurement of the total area occupied by tumorous lesions in a cross-section of the liver. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic tumorous lesion area measurement" RELATED [] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0001069 ! liver tumorous lesion size measurement created_by: jsmith creation_date: 2012-09-04T02:00:48Z [Term] id: CMO:0001071 name: area of individual liver tumorous lesion namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the liver. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001070 ! liver tumorous lesion area measurement created_by: jsmith creation_date: 2012-09-04T02:03:24Z [Term] id: CMO:0001072 name: area of liver occupied by tumorous lesions namespace: Clinical_Measurement.ontology def: "A measurement of the total extent of the two-dimensional surface of the liver occupied by tumorous lesions, or a measurement of the total extent of a two-dimensional cross-section through the liver occupied by tumorous lesions. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001070 ! liver tumorous lesion area measurement created_by: jsmith creation_date: 2012-09-04T02:03:40Z [Term] id: CMO:0001073 name: calculated liver tumorous lesion area measurement namespace: Clinical_Measurement.ontology def: "Measurement of the extent of a two-dimensional surface of or plane through an individual tumorous lesion in the liver, or a measurement of the total area occupied by tumorous lesions in a cross-section of the liver when such a measurement has been normalized or adjusted by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001070 ! liver tumorous lesion area measurement created_by: jsmith creation_date: 2012-09-04T02:03:59Z [Term] id: CMO:0001074 name: area of liver occupied by tumorous lesions as percentage of total liver area namespace: Clinical_Measurement.ontology def: "A calculated measurement of the area of the liver occupied by tumorous lesions compared to the total area of the liver, expressed as a percentage. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed, RGD:JRS] is_a: CMO:0001073 ! calculated liver tumorous lesion area measurement created_by: jsmith creation_date: 2012-09-04T02:04:21Z [Term] id: CMO:0001075 name: liver tumorous lesion area to total liver area ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which area of the liver occupied by tumorous lesions is divided by the total area of the liver and presented as a ratio, fraction or quotient, thus normalizing it to the size of the liver." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic tumorous lesion area to total liver area ratio" RELATED [] is_a: CMO:0001073 ! calculated liver tumorous lesion area measurement created_by: jsmith creation_date: 2012-09-04T02:04:57Z [Term] id: CMO:0001076 name: liver tumorous lesion diameter measurement namespace: Clinical_Measurement.ontology is_a: CMO:0001069 ! liver tumorous lesion size measurement created_by: jsmith creation_date: 2012-09-04T02:22:41Z [Term] id: CMO:0001077 name: liver tumorous lesion volume measurement namespace: Clinical_Measurement.ontology def: "Measurement of the size of the three dimensional space occupied by an individual liver tumorous lesion, or of the total three dimensional space occupied by tumorous lesions in the liver. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic tumorous lesion volume measurement" RELATED [] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0001069 ! liver tumorous lesion size measurement created_by: jsmith creation_date: 2012-09-04T02:23:13Z [Term] id: CMO:0001078 name: volume of individual liver tumorous lesion namespace: Clinical_Measurement.ontology def: "Measurement of the size of the three dimensional space occupied by an individual liver tumorous lesion. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dictionary:The American Heritage Science Dictionary, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "volume of individual hepatic tumorous lesion" RELATED [] is_a: CMO:0001077 ! liver tumorous lesion volume measurement created_by: jsmith creation_date: 2012-09-04T02:55:15Z [Term] id: CMO:0001079 name: volume of liver occupied by tumorous lesions namespace: Clinical_Measurement.ontology def: "Measurement of the size of the total three dimensional space occupied by tumorous lesions in the liver. A tumorous lesion is one which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors and preneoplastic lesions, as well as hyperplastic lesions composed of histologically normal cells." [Dictionary:Dorland's Illustrated Medical Dictionary\, 31st Ed, Dictionary:The American Heritage Science Dictionary] is_a: CMO:0001077 ! liver tumorous lesion volume measurement created_by: jsmith creation_date: 2012-09-04T02:59:34Z [Term] id: CMO:0001080 name: calculated liver tumorous lesion volume measurement namespace: Clinical_Measurement.ontology def: "Measurement of the size of the three dimensional space occupied by an individual liver tumorous lesion, or of the total three dimensional space occupied by tumorous lesions in the liver when such a measurement has been normalized or adjusted by a mathematical process or computation." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "calculated hepatic tumorous lesion volume measurement" RELATED [] is_a: CMO:0001077 ! liver tumorous lesion volume measurement created_by: jsmith creation_date: 2012-09-04T03:01:09Z [Term] id: CMO:0001081 name: volume of liver occupied by tumorous lesions as percentage of total liver volume namespace: Clinical_Measurement.ontology def: "A calculated value in which the volume of the liver occupied by tumorous lesions is compared to the total volume of the liver and expressed as a percentage thus normalizing it to the size of the liver." [Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0001079 ! volume of liver occupied by tumorous lesions is_a: CMO:0001080 ! calculated liver tumorous lesion volume measurement created_by: jsmith creation_date: 2012-09-04T03:04:41Z [Term] id: CMO:0001082 name: liver tumorous lesion volume to total liver volume ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which volume of the liver occupied by tumorous lesions is divided by the total volume of the liver and presented as a ratio, fraction or quotient, thus normalizing it to the size of the liver." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "hepatic tumorous lesion volume to total liver volume ratio" RELATED [] is_a: CMO:0001079 ! volume of liver occupied by tumorous lesions is_a: CMO:0001080 ! calculated liver tumorous lesion volume measurement created_by: jsmith creation_date: 2012-09-04T03:06:12Z [Term] id: CMO:0001083 name: mammary gland morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of the mammary gland, the specialized exocrine gland of the skin of female mammals, which secretes milk for nourishment of the young and which is included in and encased by the mammary organ." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000414 ! mammary organ morphological measurement is_a: CMO:0000786 ! mammary gland measurement created_by: jsmith creation_date: 2012-09-04T04:40:53Z [Term] id: CMO:0001084 name: mammary gland terminal end bud count namespace: Clinical_Measurement.ontology def: "Measurement of the number of mammary gland terminal end buds in a specified sample. Terminal end buds are the highly proliferative structures found at the tips of mammary ducts as they elongate into the mammary fat pad during mammary gland development." [Wikipedia:http\://en.wikipedia.org/wiki/Mammary_gland_development] is_a: CMO:0001083 ! mammary gland morphological measurement created_by: jsmith creation_date: 2012-09-04T04:45:52Z [Term] id: CMO:0001085 name: natural killer cell count namespace: Clinical_Measurement.ontology def: "The number of natural killer (NK) cells in a specified volume of blood. NK cells are cells capable of mediating cytotoxic reactions without themselves being specifically sensitized against the target and are critical to the innate immune system." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] comment: This term is not to be used for the number of natural killer T (NKT) cells which are a subclass of T cells. synonym: "NK cell count" EXACT [] is_a: CMO:0000031 ! lymphocyte count created_by: jsmith creation_date: 2012-09-04T06:12:08Z [Term] id: CMO:0001086 name: natural killer T cell count namespace: Clinical_Measurement.ontology def: "The number of natural killer T (NKT) cells in a specified volume of blood. NKT cells are a specialized population of T cells that express both a semi-invariant T cell receptor (TCR alpha beta) and surface antigens typically associated with natural killer cells." [Website:http\://www.rndsystems.com/molecule_group.aspx?g=2851&r=4&g2=695] comment: This term is not to be used for natural killer (NK) cells. synonym: "NKT cell count" EXACT [] is_a: CMO:0000110 ! T lymphocyte count created_by: jsmith creation_date: 2012-09-04T06:28:02Z [Term] id: CMO:0001087 name: CD4+ T helper cell count namespace: Clinical_Measurement.ontology def: "The number of CD4-positive T helper lymphocytes in a specified volume of blood. Th cells are differentiated T lymphocytes which express the CD4 (also known as the T4 antigen) on their surface and cooperate with other lymphocytes, e.g. with B lymphocytes in the synthesis of antibody to many antigens; they play an integral role in immunoregulation" [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "helper T cell count" RELATED [] synonym: "Th cell count" RELATED [] is_a: CMO:0000596 ! CD4 cell count created_by: jsmith creation_date: 2012-09-04T06:54:22Z [Term] id: CMO:0001088 name: liver fibrotic lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a liver lesion resulting from a process of fibrosis, the proliferation of fibroblasts and fibrous tissue, usually in response to an injury, inflammation or infection. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "liver fibrosis measurement" RELATED [] is_a: CMO:0001066 ! liver non-tumorous lesion measurement created_by: JSmith creation_date: 2012-09-06T01:12:37Z [Term] id: CMO:0001089 name: liver fibrotic lesion size measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the size of an individual fibrotic lesion in the liver, or of the amount of the liver occupied by fibrotic lesions. A fibrotic lesion is a localized pathological change in structure of an organ or tissue due to injury or disease, especially one that is circumscribed and well defined, resulting from a process of fibrosis, the proliferation of fibroblasts and fibrous tissue, usually in response to an injury, inflammation or infection." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "liver fibrosis size measurement" RELATED [] is_a: CMO:0001088 ! liver fibrotic lesion measurement created_by: JSmith creation_date: 2012-09-06T01:18:20Z [Term] id: CMO:0001090 name: liver fibrotic lesion area measurement namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through an individual fibrotic lesion in the liver, or a measurement of the total area occupied by fibrotic lesions in a cross-section of the liver. A fibrotic lesion is a localized pathological change in structure of an organ or tissue due to injury or disease, especially one that is circumscribed and well defined, resulting from a process of fibrosis, the proliferation of fibroblasts and fibrous tissue, usually in response to an injury, inflammation or infection." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "liver fibrosis area measurement" RELATED [] is_a: CMO:0001089 ! liver fibrotic lesion size measurement created_by: JSmith creation_date: 2012-09-06T01:20:23Z [Term] id: CMO:0001091 name: area of individual liver fibrotic lesion namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through an individual fibrotic lesion in the liver. A fibrotic lesion is a localized pathological change in structure of an organ or tissue due to injury or disease, especially one that is circumscribed and well defined, resulting from a process of fibrosis, the proliferation of fibroblasts and fibrous tissue, usually in response to an injury, inflammation or infection." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001090 ! liver fibrotic lesion area measurement created_by: JSmith creation_date: 2012-09-06T01:22:34Z [Term] id: CMO:0001092 name: area of liver occupied by fibrotic lesions namespace: Clinical_Measurement.ontology def: "A measurement of the total extent of the two-dimensional surface of the liver occupied by fibrotic lesions, or a measurement of the total extent of a two-dimensional cross-section through the liver occupied by fibrotic lesions. A fibrotic lesion is a localized pathological change in structure of an organ or tissue due to injury or disease, especially one that is circumscribed and well defined, resulting from a process of fibrosis, the proliferation of fibroblasts and fibrous tissue, usually in response to an injury, inflammation or infection." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "area of liver occupied by fibrosis" RELATED [] is_a: CMO:0001090 ! liver fibrotic lesion area measurement created_by: JSmith creation_date: 2012-09-06T01:25:01Z [Term] id: CMO:0001093 name: calculated liver fibrotic lesion area measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the extent of a two-dimensional surface of or plane through an individual fibrotic lesion in the liver, or a measurement of the total area occupied by fibrotic lesions in a cross-section of the liver when such a measurement has been normalized or adjusted by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "calculated liver fibrosis area measurement" RELATED [] is_a: CMO:0001090 ! liver fibrotic lesion area measurement created_by: JSmith creation_date: 2012-09-06T01:26:35Z [Term] id: CMO:0001094 name: area of liver occupied by fibrotic lesions as percentage of total liver area namespace: Clinical_Measurement.ontology def: "A calculated measurement of the area of the liver occupied by fibrotic lesions compared to the total area of the liver, expressed as a percentage. A fibrotic lesion is a localized pathological change in structure of an organ or tissue due to injury or disease, especially one that is circumscribed and well defined, resulting from a process of fibrosis, the proliferation of fibroblasts and fibrous tissue, usually in response to an injury, inflammation or infection." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dictionary:The Online American Heritage Dictionary of the English Language, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "area of liver occupied by fibrosis as percentage of total liver area" RELATED [] is_a: CMO:0001092 ! area of liver occupied by fibrotic lesions is_a: CMO:0001093 ! calculated liver fibrotic lesion area measurement created_by: JSmith creation_date: 2012-09-06T01:29:10Z [Term] id: CMO:0001095 name: liver fibrotic lesion area to total liver area ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which area of the liver occupied by fibrotic lesions is divided by the total area of the liver and presented as a ratio, fraction or quotient, thus normalizing it to the size of the liver." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "liver fibrosis area to total liver area ratio" RELATED [] is_a: CMO:0001092 ! area of liver occupied by fibrotic lesions is_a: CMO:0001093 ! calculated liver fibrotic lesion area measurement created_by: JSmith creation_date: 2012-09-06T01:31:40Z [Term] id: CMO:0001096 name: apoptotic cell measurement namespace: Clinical_Measurement.ontology synonym: "Not4Curation " RELATED curation_status [] is_a: CMO:0000227 ! cell measurement created_by: JSmith creation_date: 2012-09-12T05:23:02Z [Term] id: CMO:0001097 name: calculated apoptotic cell measurement namespace: Clinical_Measurement.ontology synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0001096 ! apoptotic cell measurement created_by: JSmith creation_date: 2012-09-12T05:42:06Z [Term] id: CMO:0001098 name: number of TUNEL-positive cells as percentage of total number of cells namespace: Clinical_Measurement.ontology synonym: "number of apoptotic cells as percentage of total number of cells" RELATED [] is_a: CMO:0001097 ! calculated apoptotic cell measurement created_by: JSmith creation_date: 2012-09-12T05:43:33Z [Term] id: CMO:0001099 name: urine protein excretion rate to body weight ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000759 ! urine protein excretion rate created_by: JSmith creation_date: 2012-09-12T05:56:55Z [Term] id: CMO:0001100 name: RT6.1 cell count namespace: Clinical_Measurement.ontology synonym: "RT6.1 positive T cell count" EXACT [] synonym: "RT6.1 T lymphocyte count" EXACT [] synonym: "RT6.1+ cell count" EXACT [] synonym: "RT6.1+ T cell count" EXACT [] is_a: CMO:0000110 ! T lymphocyte count created_by: JSmith creation_date: 2012-09-12T06:00:56Z [Term] id: CMO:0001101 name: RT6.2 cell count namespace: Clinical_Measurement.ontology synonym: "RT6.2 positive T cell count" EXACT [] synonym: "RT6.2 T lymphocyte count" EXACT [] synonym: "RT6.2+ cell count" EXACT [] synonym: "RT6.2+ T cell count" EXACT [] is_a: CMO:0000110 ! T lymphocyte count created_by: JSmith creation_date: 2012-09-12T06:03:46Z [Term] id: CMO:0001102 name: activated T lymphocyte count namespace: Clinical_Measurement.ontology synonym: "activated T cell count" EXACT [] is_a: CMO:0000110 ! T lymphocyte count created_by: JSmith creation_date: 2012-09-12T06:05:32Z [Term] id: CMO:0001103 name: Th1 cell count namespace: Clinical_Measurement.ontology synonym: "TH1 cell count" EXACT [] synonym: "type 1 helper T cell count" RELATED [] is_a: CMO:0001087 ! CD4+ T helper cell count created_by: JSmith creation_date: 2012-09-12T06:07:31Z [Term] id: CMO:0001104 name: Th2 cell count namespace: Clinical_Measurement.ontology synonym: "TH2 cell count" EXACT [] synonym: "type 2 helper T cell count" RELATED [] is_a: CMO:0001087 ! CD4+ T helper cell count created_by: JSmith creation_date: 2012-09-12T06:12:41Z [Term] id: CMO:0001105 name: Th1 cell to Th2 cell ratio namespace: Clinical_Measurement.ontology synonym: "TH1 cell to TH2 cell ratio" EXACT [] synonym: "type 1 helper T cell to type 2 helper T cell ratio" RELATED [] is_a: CMO:0001103 ! Th1 cell count is_a: CMO:0001104 ! Th2 cell count created_by: JSmith creation_date: 2012-09-12T06:13:40Z [Term] id: CMO:0001106 name: Th1 cell to Th2 cell ratio as percentage namespace: Clinical_Measurement.ontology synonym: "TH1 cell to TH2 cell ratio as percentage" EXACT [] synonym: "type 1 helper T cell to type 2 helper T cell ratio as percentage" RELATED [] is_a: CMO:0001103 ! Th1 cell count is_a: CMO:0001104 ! Th2 cell count created_by: JSmith creation_date: 2012-09-12T06:15:56Z [Term] id: CMO:0001107 name: disease process measurement namespace: Clinical_Measurement.ontology def: "Any measurement that deals with the process or development of a disease state, for example, the onset, progression or severity of the disease or its symptoms." [RGD:JRS] is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-09-13T11:52:30Z [Term] id: CMO:0001108 name: disease onset/diagnosis measurement namespace: Clinical_Measurement.ontology def: "Any measurement which expresses a quantity related to the beginning, early stages or development of a disease, or to the official determination of a disease as the cause of the observed symptom(s)." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine] is_a: CMO:0001107 ! disease process measurement created_by: JSmith creation_date: 2012-09-13T11:55:24Z [Term] id: CMO:0001109 name: disease severity measurement namespace: Clinical_Measurement.ontology is_a: CMO:0001107 ! disease process measurement created_by: JSmith creation_date: 2012-09-13T11:55:56Z [Term] id: CMO:0001110 name: disease progression measurement namespace: Clinical_Measurement.ontology is_a: CMO:0001107 ! disease process measurement created_by: JSmith creation_date: 2012-09-13T11:56:15Z [Term] id: CMO:0001111 name: diabetes mellitus onset/diagnosis measurement namespace: Clinical_Measurement.ontology def: "Any measurement which expresses a quantity related to the beginning, early stages or development of diabetes mellitus, or to the official determination of diabetes mellitus as the cause of the observed symptom(s). Diabetes mellitus is a chronic syndrome of impaired carbohydrate, protein, and fat metabolism owing to insufficient secretion of insulin or to target tissue insulin resistance and resulting in hyperglycemia due to decreased glucose tolerance." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001108 ! disease onset/diagnosis measurement created_by: JSmith creation_date: 2012-09-13T11:56:37Z [Term] id: CMO:0001112 name: age at onset/diagnosis of diabetes mellitus namespace: Clinical_Measurement.ontology def: "A measurement of the chronological age, that is, the length of time since birth, of the individual when the symptoms of diabetes mellitus first appeared, or when an official diagnosis of diabetes mellitus was first determined. Diabetes mellitus is a chronic syndrome of impaired carbohydrate, protein, and fat metabolism owing to insufficient secretion of insulin or to target tissue insulin resistance and resulting in hyperglycemia due to decreased glucose tolerance." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0001111 ! diabetes mellitus onset/diagnosis measurement created_by: JSmith creation_date: 2012-09-13T11:57:04Z [Term] id: CMO:0001113 name: diabetes mellitus incidence/prevalence measurement namespace: Clinical_Measurement.ontology def: "Any measurement which expresses either the total number of cases of diabetes mellitus in a population at a given point in time or the rate of occurrence of new cases of diabetes mellitus, that is, the proportion of the population which develop the condition within a period of time." [Wikipedia:http\://en.wikipedia.org/wiki/Incidence_%28epidemiology%29#Incidence_vs._prevalence] synonym: "Not4Curation" RELATED curation_status [] is_a: CMO:0000926 ! disease incidence/prevalence measurement created_by: JSmith creation_date: 2012-09-13T12:07:45Z [Term] id: CMO:0001114 name: percentage of study population developing diabetes mellitus during a period of time namespace: Clinical_Measurement.ontology def: "The number of new cases of diabetes mellitus appearing in a study population during a specified period compared to the total number of individuals in the study population, expressed as a percentage. Diabetes mellitus is a chronic syndrome of impaired carbohydrate, protein, and fat metabolism owing to insufficient secretion of insulin or to target tissue insulin resistance and resulting in hyperglycemia due to decreased glucose tolerance." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "diabetes incidence" RELATED [] synonym: "diabetes mellitus incidence" RELATED [] is_a: CMO:0001113 ! diabetes mellitus incidence/prevalence measurement created_by: JSmith creation_date: 2012-09-13T12:08:54Z [Term] id: CMO:0001115 name: percentage of study population displaying diabetes mellitus at a given point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display diabetes mellitus at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage. Diabetes mellitus is a chronic syndrome of impaired carbohydrate, protein, and fat metabolism owing to insufficient secretion of insulin or to target tissue insulin resistance and resulting in hyperglycemia due to decreased glucose tolerance." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "diabetes mellitus prevalence" RELATED [] synonym: "diabetes prevalence" RELATED [] is_a: CMO:0001113 ! diabetes mellitus incidence/prevalence measurement created_by: JSmith creation_date: 2012-09-13T12:09:46Z [Term] id: CMO:0001116 name: calculated apoptotic body measurement namespace: Clinical_Measurement.ontology def: "Measurement of an apoptotic body which has been normalized or adjusted by a mathematical process or computation. An apoptotic body is a small sealed membrane vesicle that is produced from cells undergoing cell death by apoptosis." [COPE:Cytokines & Cells Encyclopedia] is_a: CMO:0001097 ! calculated apoptotic cell measurement created_by: JSmith creation_date: 2012-09-13T02:34:25Z [Term] id: CMO:0001117 name: liver enzyme measurement namespace: Clinical_Measurement.ontology is_a: CMO:0001064 ! liver measurement created_by: JSmith creation_date: 2012-09-13T03:56:46Z [Term] id: CMO:0001118 name: liver ornithine decarboxylase activity namespace: Clinical_Measurement.ontology is_a: CMO:0001117 ! liver enzyme measurement created_by: JSmith creation_date: 2012-09-13T03:57:41Z [Term] id: CMO:0001119 name: R73 cell count namespace: Clinical_Measurement.ontology synonym: "R73+ cell count" EXACT [] synonym: "T cell receptor alpha/beta positive cell count" RELATED [] synonym: "TCR alpha/beta positive cell count" RELATED [] is_a: CMO:0000110 ! T lymphocyte count created_by: JSmith creation_date: 2012-09-13T05:27:15Z [Term] id: CMO:0001120 name: R73 cell to total mononuclear cell ratio namespace: Clinical_Measurement.ontology is_a: CMO:0001119 ! R73 cell count created_by: JSmith creation_date: 2012-09-13T05:30:11Z [Term] id: CMO:0001121 name: CD4 cell to R73 cell ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000596 ! CD4 cell count is_a: CMO:0001119 ! R73 cell count created_by: JSmith creation_date: 2012-09-13T05:31:49Z [Term] id: CMO:0001122 name: CD8 cell to R73 cell ratio namespace: Clinical_Measurement.ontology is_a: CMO:0000597 ! CD8 cell count is_a: CMO:0001119 ! R73 cell count created_by: JSmith creation_date: 2012-09-13T05:33:08Z [Term] id: CMO:0001123 name: calculated heart left ventricle weight namespace: Clinical_Measurement.ontology is_a: CMO:0000073 ! calculated heart weight is_a: CMO:0000776 ! heart left ventricle weight is_a: CMO:0000984 ! calculated heart left ventricle morphological measurement created_by: JSmith creation_date: 2012-09-13T06:09:33Z [Term] id: CMO:0001124 name: calculated heart right ventricle weight namespace: Clinical_Measurement.ontology is_a: CMO:0000073 ! calculated heart weight is_a: CMO:0000777 ! heart right ventricle weight is_a: CMO:0001125 ! calculated heart right ventricle morphological measurement created_by: JSmith creation_date: 2012-09-13T06:11:08Z [Term] id: CMO:0001125 name: calculated heart right ventricle morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0000952 ! heart right ventricle morphological measurement created_by: JSmith creation_date: 2012-09-13T06:14:55Z [Term] id: CMO:0001126 name: cerebral artery inner diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of a cerebral artery, passing through its center and ending on either side at the inner surface of the blood vessel wall. The cerebral arteries are those which supply blood to the brain, more specifically, to the cerebrum." [Mosby:Mosby's Medical Dictionary\, 8th Ed, RGD:JRS] synonym: "cerebral artery lumen diameter" RELATED [] is_a: CMO:0000971 ! artery inner diameter created_by: JSmith creation_date: 2012-10-03T05:31:53Z [Term] id: CMO:0001127 name: anterior cerebral artery inner diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of an anterior cerebral artery, passing through its center and ending on either side at the inner surface of the blood vessel wall. The anterior cerebral artery (ACA) is one of a pair of arteries that supply oxygenated blood to the most medial portions of the frontal lobes and superior medial parietal lobes of the brain." [RGD:JRS, Wikipedia:http\://en.wikipedia.org/wiki/Anterior_cerebral_artery] synonym: "ACA inner diameter" RELATED [] synonym: "anterior cerebral artery lumen diameter" RELATED [] is_a: CMO:0001126 ! cerebral artery inner diameter created_by: JSmith creation_date: 2012-10-03T05:39:47Z [Term] id: CMO:0001128 name: middle cerebral artery inner diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of a middle cerebral artery, passing through its center and ending on either side at the inner surface of the blood vessel wall. The middle cerebral arteries are the largest of the cerebral arteries and supply blood to the lateral cerebral cortex, anterior temporal lobes and insular cortices of the brain." [RGD:JRS, Wikipedia:http\://en.wikipedia.org/wiki/Middle_cerebral_artery] synonym: "MCA inner diameter" RELATED [] synonym: "middle cerebral artery lumen diameter" RELATED [] is_a: CMO:0001126 ! cerebral artery inner diameter created_by: JSmith creation_date: 2012-10-03T05:48:00Z [Term] id: CMO:0001129 name: posterior cerebral artery inner diameter namespace: Clinical_Measurement.ontology def: "The length of a line which crosses a transverse view of a posterior cerebral artery, passing through its center and ending on either side at the inner surface of the blood vessel wall. The posterior cerebral artery (PCA) is one of a pair of blood vessels that supply blood to the posterior aspect, i.e. the occipital lobe, of the brain." [RGD:JRS, Wikipedia:http\://en.wikipedia.org/wiki/Posterior_cerebral_artery] synonym: "PCA inner diameter" RELATED [] synonym: "posterior cerebral artery lumen diameter" RELATED [] is_a: CMO:0001126 ! cerebral artery inner diameter created_by: JSmith creation_date: 2012-10-03T05:59:18Z [Term] id: CMO:0001130 name: kidney lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion in kidney, he organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dictionary:The American Heritage Medical Dictionary, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000677 ! organ lesion measurement is_a: CMO:0000906 ! kidney measurement created_by: JSmith creation_date: 2012-10-08T02:59:36Z [Term] id: CMO:0001131 name: kidney non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion in the kidney, he organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dictionary:The American Heritage Medical Dictionary, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000860 ! organ non-tumorous lesion measurement is_a: CMO:0001130 ! kidney lesion measurement created_by: JSmith creation_date: 2012-10-08T03:01:39Z [Term] id: CMO:0001132 name: kidney tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion in the kidney, he organ which functions to maintain proper water and electrolyte balance, regulate acid-base concentration, and filter the blood of metabolic wastes, which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors, preneoplastic lesions, and hyperplastic lesions composed of histologically normal cells." [Dictionary:The American Heritage Medical Dictionary, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000859 ! organ tumorous lesion measurement is_a: CMO:0001130 ! kidney lesion measurement created_by: JSmith creation_date: 2012-10-08T03:03:01Z [Term] id: CMO:0001133 name: kidney glomerulosclerotic lesion measurement namespace: Clinical_Measurement.ontology def: "Any measurement of lesions resulting from fibrosis, scarring or hyaline deposits within a kidney glomerulus, a tuft of capillaries situated within a Bowman's capsule at the end of a renal tubule in the vertebrate kidney, that filters waste products from the blood and thus initiates urine formation." [Dictionary:The American Heritage Medical Dictionary] synonym: "kidney glomerulosclerosis measurement" RELATED [] synonym: "renal glomerulosclerosis measurement" RELATED [] synonym: "renal glomerulosclerotic lesion measurement" RELATED [] is_a: CMO:0001131 ! kidney non-tumorous lesion measurement created_by: JSmith creation_date: 2012-10-08T03:09:04Z [Term] id: CMO:0001134 name: calculated kidney glomerulosclerotic lesion measurement namespace: Clinical_Measurement.ontology def: "A measurement of lesions resulting from fibrosis, scarring or hyaline deposits within one or more kidney glomeruli which has been normalized, adjusted or derived by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dictionary:The American Heritage Medical Dictionary] synonym: "calculated kidney glomerulosclerosis measurement" RELATED [] synonym: "calculated renal glomerulosclerosis measurement" RELATED [] synonym: "calculated renal glomerulosclerotic lesion measurement" RELATED [] is_a: CMO:0001133 ! kidney glomerulosclerotic lesion measurement created_by: JSmith creation_date: 2012-10-08T03:43:25Z [Term] id: CMO:0001135 name: index of glomerular damage namespace: Clinical_Measurement.ontology def: "A measurement of lesions resulting from fibrosis, scarring or hyaline deposits within kidney glomeruli which is derived from a combination of multiple measurements and/or objective or subjective severity scores according to a specified formula or set of criteria." [Dictionary:Mondofacto Online Medical Dictionary, Dictionary:The American Heritage Medical Dictionary] synonym: "glomerular damage composite score" RELATED [] synonym: "glomerulosclerosis composite score" RELATED [] synonym: "glomerulosclerosis damage index" RELATED [] is_a: CMO:0001134 ! calculated kidney glomerulosclerotic lesion measurement created_by: JSmith creation_date: 2012-10-08T03:45:56Z [Term] id: CMO:0001136 name: percentage of study population developing type 1 diabetes mellitus during a period of time namespace: Clinical_Measurement.ontology def: "The number of new cases of type 1 diabetes mellitus (T1DM) appearing in a study population during a specified period compared to the total number of individuals in the study population, expressed as a percentage. T1DM is a form of diabetes mellitus which results from the autoimmune destruction of beta cells of the pancreatic islets of Langerhans." [Wikipedia:http\://en.wikipedia.org/wiki/Diabetes_mellitus_type_1] synonym: "diabetes mellitus type I incidence" RELATED [] synonym: "IDDM incidence" RELATED [] synonym: "insulin-dependent diabetes incidence" RELATED [] synonym: "juvenile diabetes incidence" RELATED [] synonym: "T1D incidence" RELATED [] synonym: "T1DM incidence" RELATED [] synonym: "type 1 diabetes mellitus incidence" RELATED [] is_a: CMO:0001114 ! percentage of study population developing diabetes mellitus during a period of time created_by: JSmith creation_date: 2012-10-09T10:55:37Z [Term] id: CMO:0001137 name: percentage of study population developing type 2 diabetes mellitus during a period of time namespace: Clinical_Measurement.ontology def: "The number of new cases of type 2 diabetes mellitus appearing in a study population during a specified period compared to the total number of individuals in the study population, expressed as a percentage. T2DM is a form of diabetes often, although not universally, associated with obesity, insulin resistance, hyperlipidemia(s) and cardiovascular symptoms such as hypertension." [Wikipedia:http\://en.wikipedia.org/wiki/Diabetes_mellitus_type_2] synonym: "adult-onset diabetes mellitus incidence" RELATED [] synonym: "diabetes mellitus type II incidence" RELATED [] synonym: "NIDDM incidence" RELATED [] synonym: "non-insulin-dependent diabetes mellitus incidence" RELATED [] synonym: "T2D incidence" RELATED [] synonym: "T2DM incidence" RELATED [] synonym: "type 2 diabetes mellitus incidence" RELATED [] is_a: CMO:0001114 ! percentage of study population developing diabetes mellitus during a period of time created_by: JSmith creation_date: 2012-10-09T10:59:15Z [Term] id: CMO:0001138 name: percentage of study population displaying type 1 diabetes mellitus at a given point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display type 1 diabetes mellitus (T1DM) at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage. T1DM is a form of diabetes mellitus which results from the autoimmune destruction of beta cells of the pancreatic islets of Langerhans." [Wikipedia:http\://en.wikipedia.org/wiki/Diabetes_mellitus_type_1] synonym: "diabetes mellitus type I prevalence" RELATED [] synonym: "IDDM prevalence" RELATED [] synonym: "insulin-dependent diabetes prevalence" RELATED [] synonym: "juvenile diabetes prevalence" RELATED [] synonym: "T1D prevalence" RELATED [] synonym: "T1DM prevalence" RELATED [] synonym: "type 1 diabetes mellitus prevalence" RELATED [] is_a: CMO:0001115 ! percentage of study population displaying diabetes mellitus at a given point in time created_by: JSmith creation_date: 2012-10-09T11:03:00Z [Term] id: CMO:0001139 name: percentage of study population displaying type 2 diabetes mellitus at a given point in time namespace: Clinical_Measurement.ontology def: "The number of individuals in a study population which display type 2 diabetes mellitus (T2DM) at a certain point in time compared to the total number of individuals in the study population, expressed as a percentage. T2DM is a form of diabetes often, although not universally, associated with obesity, insulin resistance, hyperlipidemia(s) and cardiovascular symptoms such as hypertension." [Wikipedia:http\://en.wikipedia.org/wiki/Diabetes_mellitus_type_2] synonym: "adult-onset diabetes mellitus prevalence" RELATED [] synonym: "diabetes mellitus type II prevalence" RELATED [] synonym: "NIDDM prevalence" RELATED [] synonym: "non-insulin-dependent diabetes mellitus prevalence" RELATED [] synonym: "T2D prevalence" RELATED [] synonym: "T2DM prevalence" RELATED [] synonym: "type 2 diabetes mellitus prevalence" RELATED [] is_a: CMO:0001115 ! percentage of study population displaying diabetes mellitus at a given point in time created_by: JSmith creation_date: 2012-10-09T11:04:39Z [Term] id: CMO:0001140 name: age at onset/diagnosis of type 1 diabetes mellitus namespace: Clinical_Measurement.ontology def: "A measurement of the chronological age, that is, the length of time since birth, of the individual when the symptoms of type 1 diabetes mellitus (T1DM) first appeared, or when an official diagnosis of T1DM was first determined. T1DM is a form of diabetes mellitus which results from the autoimmune destruction of beta cells of the pancreatic islets of Langerhans." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Wikipedia:http\://en.wikipedia.org/wiki/Diabetes_mellitus_type_1] synonym: "age at onset/diagnosis of diabetes mellitus type I" EXACT [] synonym: "age at onset/diagnosis of IDDM" RELATED [] synonym: "age at onset/diagnosis of insulin-dependent diabetes" RELATED [] synonym: "age at onset/diagnosis of juvenile diabetes" RELATED [] synonym: "age at onset/diagnosis of T1D" EXACT [] synonym: "age at onset/diagnosis of T1DM" EXACT [] is_a: CMO:0001112 ! age at onset/diagnosis of diabetes mellitus created_by: JSmith creation_date: 2012-10-09T11:42:58Z [Term] id: CMO:0001141 name: age at onset/diagnosis of type 2 diabetes mellitus namespace: Clinical_Measurement.ontology def: "A measurement of the chronological age, that is, the length of time since birth, of the individual when the symptoms of type 2 diabetes mellitus (T2DM) first appeared, or when an official diagnosis of T2DM was first determined. T2DM is a form of diabetes often, although not universally, associated with obesity, insulin resistance, hyperlipidemia(s) and cardiovascular symptoms such as hypertension." [Dictionary:McGraw-Hill Concise Dictionary of Modern Medicine, Wikipedia:http\://en.wikipedia.org/wiki/Diabetes_mellitus_type_2] synonym: "age at onset/diagnosis of adult-onset diabetes mellitus" RELATED [] synonym: "age at onset/diagnosis of diabetes mellitus type II" EXACT [] synonym: "age at onset/diagnosis of NIDDM" RELATED [] synonym: "age at onset/diagnosis of non-insulin-dependent diabetes mellitus" RELATED [] synonym: "age at onset/diagnosis of T2D" EXACT [] synonym: "age at onset/diagnosis of T2DM" EXACT [] is_a: CMO:0001112 ! age at onset/diagnosis of diabetes mellitus created_by: JSmith creation_date: 2012-10-09T11:51:34Z [Term] id: CMO:0001142 name: pancreatic protein measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the protein content or composition of the pancreas, the elongated, racemose gland containing both endocrine and exocrine elements which secretes hormones such as insulin and glucagon internally and digestive enzymes externally. Proteins are complex organic compounds containing carbon, hydrogen, oxygen, nitrogen, and sulfur consisting of alpha-amino acids joined by peptide linkages." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed, Dorland:Dorland's Illustrated Medical Dictionary\\\, 31st Ed] is_a: CMO:0001049 ! pancreas measurement created_by: JSmith creation_date: 2012-10-09T12:45:10Z [Term] id: CMO:0001143 name: calculated pancreatic protein measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the protein content or composition of the pancreas which has been normalized, adjusted or derived by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed] is_a: CMO:0001142 ! pancreatic protein measurement created_by: JSmith creation_date: 2012-10-09T01:06:57Z [Term] id: CMO:0001144 name: pancreatic insulin to total pancreatic protein ratio namespace: Clinical_Measurement.ontology def: "The ratio of the amount of insulin, the polypeptide hormone secreted by the islets of Langerhans which helps regulate the metabolism of carbohydrates and fats, in the pancreas to the total amount of protein in the pancreas." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0001143 ! calculated pancreatic protein measurement created_by: JSmith creation_date: 2012-10-09T01:09:30Z [Term] id: CMO:0001145 name: calculated intramuscular fat morphological measurement namespace: Clinical_Measurement.ontology def: "A measurement which has been normalized, adjusted or derived by a mathematical process or computation, of the physical form or structure of the small deposits of fat located within and throughout skeletal muscle." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Wikipedia:http\://en.wikipedia.org/wiki/Intramuscular_fat] is_a: CMO:0000208 ! intramuscular fat morphological measurement is_a: CMO:0001146 ! calculated skeletal muscle morphological measurement created_by: JSmith creation_date: 2012-10-09T06:45:38Z [Term] id: CMO:0001146 name: calculated skeletal muscle morphological measurement namespace: Clinical_Measurement.ontology is_a: CMO:0001147 ! skeletal muscle morphological measurement created_by: JSmith creation_date: 2012-10-09T06:46:33Z [Term] id: CMO:0001147 name: skeletal muscle morphological measurement namespace: Clinical_Measurement.ontology def: "Any measurement of the physical form or structure of skeletal muscles, the striated muscles attached to bones." [Dictionary:The American Heritage Medical Dictionary, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000127 ! muscle morphological measurement created_by: JSmith creation_date: 2012-10-10T03:52:11Z [Term] id: CMO:0001148 name: skeletal muscle weight namespace: Clinical_Measurement.ontology def: "The weight of all or part of a skeletal muscle, one of the striated muscles attached to bones." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] is_a: CMO:0000131 ! muscle weight is_a: CMO:0001147 ! skeletal muscle morphological measurement created_by: JSmith creation_date: 2012-10-10T04:01:31Z [Term] id: CMO:0001149 name: disease population measurement namespace: Clinical_Measurement.ontology def: "Any measurement which deals with a disease in terms of population, geography or demographics." [RGD:JRS] synonym: "disease demographics measurement" RELATED [] is_a: CMO:0000000 ! clinical measurement created_by: JSmith creation_date: 2012-10-11T04:57:17Z [Term] id: CMO:0001150 name: pancreas lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion in the pancreas, the elongated, racemose gland containing both endocrine and exocrine elements which secretes hormones such as insulin and glucagon internally and digestive enzymes externally. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed, Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "pancreatic lesion measurement" EXACT [] is_a: CMO:0000677 ! organ lesion measurement is_a: CMO:0001049 ! pancreas measurement created_by: JSmith creation_date: 2012-10-11T05:09:02Z [Term] id: CMO:0001151 name: pancreas non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a pancreas lesion which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "pancreatic non-tumorous lesion measurement" EXACT [] is_a: CMO:0000860 ! organ non-tumorous lesion measurement is_a: CMO:0001150 ! pancreas lesion measurement created_by: JSmith creation_date: 2012-10-11T05:14:19Z [Term] id: CMO:0001152 name: pancreas tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a pancreas lesion which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors, preneoplastic lesions, and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "pancreatic tumorous lesion measurement" EXACT [] is_a: CMO:0000859 ! organ tumorous lesion measurement is_a: CMO:0001150 ! pancreas lesion measurement created_by: JSmith creation_date: 2012-10-11T05:16:01Z [Term] id: CMO:0001153 name: pancreatic islet lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a lesion involving one or more pancreatic islets, i.e. islets of Langerhans, the endocrine, hormone-producing portion of the pancreas. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "islet of Langerhans lesion measurement" EXACT [] is_a: CMO:0001050 ! pancreatic islet measurement is_a: CMO:0001150 ! pancreas lesion measurement created_by: JSmith creation_date: 2012-10-11T05:18:27Z [Term] id: CMO:0001154 name: pancreatic islet non-tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a pancreatic islet lesion which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "islet of Langerhans non-tumorous lesion measurement" EXACT [] is_a: CMO:0001151 ! pancreas non-tumorous lesion measurement is_a: CMO:0001153 ! pancreatic islet lesion measurement created_by: JSmith creation_date: 2012-10-11T05:21:52Z [Term] id: CMO:0001155 name: pancreatic islet tumorous lesion measurement namespace: Clinical_Measurement.ontology def: "Measurement of a pancreatic islet lesion which is or has the potential to become a tumor, that is, a neoplasm or new growth of tissue in which cell multiplication is more or less uncontrolled and progressive. Tumorous lesions include tumors, preneoplastic lesions, and hyperplastic lesions composed of histologically normal cells." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "islet of Langerhans tumorous lesion measurement" EXACT [] is_a: CMO:0001152 ! pancreas tumorous lesion measurement is_a: CMO:0001153 ! pancreatic islet lesion measurement created_by: JSmith creation_date: 2012-10-11T05:23:53Z [Term] id: CMO:0001156 name: pancreatic islet damage composite score namespace: Clinical_Measurement.ontology def: "A measurement of the extent of pancreatic islet damage (e.g. fibrosis) which is derived from a combination of multiple measurements and/or objective or subjective severity scores according to a specified formula or set of criteria." [Dictionary:Mondofacto Online Medical Dictionary] synonym: "islet of Langerhans damage composite score" EXACT [] synonym: "pancreatic islet lesion composite score" RELATED [] is_a: CMO:0001154 ! pancreatic islet non-tumorous lesion measurement created_by: JSmith creation_date: 2012-10-11T05:26:41Z [Term] id: CMO:0001157 name: pancreatic islet non-tumorous lesion count namespace: Clinical_Measurement.ontology def: "The number of pancreatic islets which display lesions in a particular sample." [Dictionary:The American Heritage Medical Dictionary] synonym: "number of damaged pancreatic islets" RELATED [] is_a: CMO:0001154 ! pancreatic islet non-tumorous lesion measurement created_by: JSmith creation_date: 2012-10-11T05:36:07Z [Term] id: CMO:0001158 name: muscle measurement namespace: Clinical_Measurement.ontology def: "Any measurement, morphological or physiological of a muscle or a group of muscles. Muscles are organs or tissues composed of bundles of fibers that have the power to contract and hence to produce movement." [Dictionary:Saunders Comprehensive Veterinary Dictionary\, 3rd Ed] is_a: CMO:0000916 ! musculoskeletal system measurement created_by: JSmith creation_date: 2012-10-12T05:28:37Z [Term] id: CMO:0001159 name: skeletal system measurement namespace: Clinical_Measurement.ontology def: "Any measurement, morphological or physiological, of all or part of the skeletal system, the body's framework of bones which give support and shape to the body, protect delicate internal organs, provide sites of attachment for muscles to make motion possible, manufacture blood cells and store minerals." [Dictionary:Miller-Keane Encyclopedia and Dictionary of Medicine\, Nursing\, and Allied Health\, 7th Ed] synonym: "skeleton measurement" RELATED [] is_a: CMO:0000916 ! musculoskeletal system measurement created_by: JSmith creation_date: 2012-10-12T05:38:14Z [Term] id: CMO:0001160 name: intramuscular fat area to skeletal muscle area ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the area of intramuscular fat is divided by a specified area of skeletal muscle and presented as a ratio, fraction or quotient, thus normalizing it to muscle area." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "intramuscular adipose area to muscle area ratio" RELATED [] synonym: "intramuscular adipose area to skeletal muscle area ratio" RELATED [] is_a: CMO:0001163 ! calculated intramuscular fat area created_by: JSmith creation_date: 2012-10-12T06:44:37Z [Term] id: CMO:0001161 name: intramuscular fat area to body weight ratio namespace: Clinical_Measurement.ontology def: "A calculated value in which the weight of intramuscular fat is divided by the total weight of the body and presented as a ratio, fraction or quotient, thus normalizing it to body weight." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "intramuscular adipose area to body weight ratio" RELATED [] is_a: CMO:0001163 ! calculated intramuscular fat area created_by: JSmith creation_date: 2012-10-12T06:50:48Z [Term] id: CMO:0001162 name: intramuscular fat area namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through a single deposit of intramuscular fat or a measurement of the total area occupied by intramuscular fat in a cross-section of skeletal muscle." [Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0000208 ! intramuscular fat morphological measurement created_by: JSmith creation_date: 2012-10-15T11:02:10Z [Term] id: CMO:0001163 name: calculated intramuscular fat area namespace: Clinical_Measurement.ontology def: "A measurement of the extent of a two-dimensional surface of or plane through a single deposit of intramuscular fat or a measurement of the total area occupied by intramuscular fat in a cross-section of skeletal muscle, which has been normalized, adjusted or derived by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Dictionary:The Online American Heritage Dictionary of the English Language] is_a: CMO:0001145 ! calculated intramuscular fat morphological measurement is_a: CMO:0001162 ! intramuscular fat area created_by: JSmith creation_date: 2012-10-15T11:08:36Z [Term] id: CMO:0001164 name: calculated intramuscular fat weight namespace: Clinical_Measurement.ontology def: "A measurement of the amount, by weight, of the small deposits of fat located within a specified amount of skeletal muscle, which has been normalized, adjusted or derived by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Wikipedia:http\://en.wikipedia.org/wiki/Intramuscular_fat] is_a: CMO:0000193 ! intramuscular fat weight is_a: CMO:0001145 ! calculated intramuscular fat morphological measurement created_by: JSmith creation_date: 2012-10-15T11:15:32Z [Term] id: CMO:0001165 name: kidney glomerulus morphological measurement namespace: Clinical_Measurement.ontology def: "Measurement of the physical form or structure of one or more glomeruli in the kidney. Glomeruli are the tufts of capillaries each situated within a Bowman's capsule at the end of a renal tubule in the vertebrate kidney that filter waste products from the blood and thus initiate urine formation." [Dictionary:The American Heritage Medical Dictionary] is_a: CMO:0000087 ! kidney morphological measurement created_by: JSmith creation_date: 2012-10-15T11:45:27Z [Term] id: CMO:0001166 name: kidney glomerulus diameter namespace: Clinical_Measurement.ontology def: "The length of a straight line passing through the center of a kidney glomerulus and connecting opposite points on its circumference." [Dorland:Dorland's Illustrated Medical Dictionary\, 31st Ed] synonym: "kidney glomerular diameter" EXACT [] is_a: CMO:0001165 ! kidney glomerulus morphological measurement created_by: JSmith creation_date: 2012-10-15T11:48:00Z [Term] id: CMO:0001167 name: calculated renal blood flow rate namespace: Clinical_Measurement.ontology def: "A measurement of the volume of blood delivered to or exiting from the kidneys per unit time, which has been normalized, adjusted or derived by a mathematical process or computation." [Dictionary:Merriam-Webster's Online Dictionary\, 11th Ed, Wikipedia:http\://en.wikipedia.org/wiki/Renal_blood_flow] is_a: CMO:0000907 ! renal blood flow rate created_by: JSmith creation_date: 2012-10-15T11:55:42Z [Term] id: CMO:0001168 name: absolute change in renal blood flow rate namespace: Clinical_Measurement.ontology def: "The difference in the volume of blood delivered to or exiting from the kidneys per unit time between two points in time or two conditions expressed as the result of the subtraction in and of itself without comparison by ratio with another quantity." [Website:http\://www.psychwiki.com/wiki/What_is_absolute_change%3F, Wikipedia:http\://en.wikipedia.org/wiki/Renal_blood_flow] comment: The term "absolute change" refers to the subtraction of one value from another, as opposed to a dissimilarity of two values expressed as a ratio or as a percentage. In this context it is not intended to necessarily imply the difference expressed as an absolute value |n|, that is, the numeric value of the difference without regard to its sign. is_a: CMO:0001167 ! calculated renal blood flow rate created_by: JSmith creation_date: 2012-10-15T11:59:32Z [Term] id: PT:0000001 name: livestock product trait namespace: Product.ontology alt_id: PT:1000701 def: "any measurable or observable characteristic of a product produced by or obtained from the body of an agricultural animal or bird maintained for use and profit" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: ID:0000001 ! linked ontologies [Term] id: PT:0000002 name: milk alpha-casein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of the alpha fraction of the casein phosphoprotein" [VTO:CP "Cari Park, Iowa State University Curator"] is_a: PT:0010280 ! milk casein content created_by: caripark creation_date: 2011-10-21T11:11:08Z [Term] id: PT:0000003 name: egg yolk color namespace: Product.ontology def: "any measurable or observable characteristic related to the visually perceived hue of the nutrient store of the egg that is surround by a vitelline membrane" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001889 is_a: PT:1000697 ! egg yolk morphology trait is_a: VT:0010001 ! egg color trait created_by: caripark creation_date: 2011-10-21T11:23:46Z [Term] id: PT:0000004 name: drumstick bone weight namespace: Product.ontology def: "any measurable or observable characteristic related to relative heaviness of the skeletal tissue in the lower hindlimb of a bird, consisting of the tibia and the surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000075 ! drumstick composition trait created_by: caripark creation_date: 2011-10-21T11:25:56Z [Term] id: PT:0000005 name: shoulder external fat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the adipose trimmed from the outside of the cut of meat from the upper portion of the front leg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000025 ! shoulder fat weight created_by: caripark creation_date: 2011-10-21T11:38:12Z [Term] id: PT:0000006 name: dressed carcass width namespace: Product.ontology def: "any measurable or observable characteristic related to the distance from side to side of the body of an animal following slaughter and removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: PT:0000048 ! dressed carcass size trait created_by: caripark creation_date: 2011-10-21T03:40:24Z [Term] id: PT:0000007 name: meat fatty acid C20:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C20H40O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat arachidic acid content" EXACT [] synonym: "meat arachidic acid percentage" RELATED [] synonym: "meat eicosanoic acid content" EXACT [] synonym: "meat eicosanoic acid percentage" RELATED [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2011-10-21T03:49:20Z [Term] id: PT:0000008 name: meat fatty acid cis-5,8,11,14-C20:4 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an omega-6 unsaturated fatty acid (C20H32O2), with four carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat arachidonic acid content" EXACT [] synonym: "meat arachidonic acid percentage" RELATED [] is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2011-10-21T03:56:04Z [Term] id: PT:0000009 name: milk fatty acid C15:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a fifteen-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_sheep synonym: "milk pentadecanoic acid content" EXACT [] synonym: "milk pentadecylic acid content" EXACT [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2011-10-25T09:52:43Z [Term] id: PT:0000010 name: milk fatty acid C24:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a twenty-four-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_sheep synonym: "milk tetracosanoic acid content" EXACT [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2011-10-25T09:57:49Z [Term] id: PT:0000011 name: milk fatty acid C12:1(n-3) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated, omega-3 fatty acid with a twelve-carbon backbone and one double bond" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_sheep synonym: "milk lauroleic acid content" EXACT [] is_a: PT:0010322 ! milk omega-3 fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T10:45:50Z [Term] id: PT:0000012 name: meat monounsaturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in meat; the carbon chain has only one double or triple carbon-carbon bond" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig is_a: PT:0010462 ! meat unsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T11:08:12Z [Term] id: PT:0000013 name: meat fatty acid cis-9-C14:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an omega-5, monounsaturated fatty acid (C14H26O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat myristoleic acid content" EXACT [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T11:16:29Z [Term] id: PT:0000014 name: meat fatty acid C20:5(n-3) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an omega-3, unsaturated fatty acid (C20H30O2), with five carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat eicosapentaenoic acid content" EXACT [] synonym: "meat fatty acid C20:5 n-3 content" EXACT [] is_a: PT:0000036 ! meat omega-3 polyunsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T01:32:41Z [Term] id: PT:0000015 name: loin weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the back of certain species" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000040 ! loin size trait created_by: caripark creation_date: 2011-10-25T01:43:31Z [Term] id: PT:0000016 name: meat fatty acid C22:4 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an unsaturated fatty acid (C22H36O2), with four carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat docosatetraenoic acid content" EXACT [] is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T03:37:47Z [Term] id: PT:0000017 name: meat fatty acid C22:5 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an unsaturated fatty acid (C22H34O2), with five carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat docosapentaenoic acid content" EXACT [] is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T03:37:47Z [Term] id: PT:0000018 name: meat fatty acid C22:6 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an unsaturated fatty acid (C22H32O2), with six carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat docosahexaenoic acid content" EXACT [] is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T03:37:47Z [Term] id: PT:0000019 name: meat fatty acid C20:3 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an unsaturated fatty acid (C20H34O2), with three carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat dihomo-gamma-linolenic acid content" NARROW [] synonym: "meat homolonolenic acid content" NARROW [] is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T03:55:56Z [Term] id: PT:0000020 name: meat polyunsaturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in meat; the carbon chain has two or more double or triple carbon-carbon bonds" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig is_a: PT:0010462 ! meat unsaturated fatty acid content created_by: caripark creation_date: 2011-10-25T03:59:36Z [Term] id: PT:0000021 name: dressed carcass muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the movement-producing contractile tissue of an animal, following slaughter and removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000053 ! dressed carcass muscle content created_by: caripark creation_date: 2011-10-26T08:32:17Z [Term] id: PT:0000022 name: dressed carcass bone weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the skeletal tissue of an animal following slaughter and removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000050 ! dressed carcass bone content created_by: caripark creation_date: 2011-10-26T08:32:17Z [Term] id: PT:0000023 name: loin external fat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the fat trimmed from the surface of the loin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000028 ! loin fat weight created_by: caripark creation_date: 2011-10-26T08:33:39Z [Term] id: PT:0000024 name: loin muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the muscles in the cut of meat from the back of certain species" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep synonym: "longissimus dorsi weight" NARROW [] synonym: "longissimus muscle weight" NARROW [] is_a: PT:0000067 ! loin composition trait created_by: caripark creation_date: 2011-10-26T08:36:13Z [Term] id: PT:0000025 name: shoulder fat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the adipose tissue in the cut of meat from the upper portion of the front leg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000072 ! shoulder composition trait created_by: caripark creation_date: 2011-10-26T09:17:58Z [Term] id: PT:0000026 name: egg organoleptic trait namespace: Product.ontology def: "any measurable or observable characteristic related to qualities of the egg (an ovum in combination with its nutrient stores and protective outer coverings) that involve perception by the senses" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0002070 is_a: PT:0010446 ! egg trait created_by: caripark creation_date: 2011-10-26T10:05:48Z [Term] id: PT:0000027 name: dressed carcass fat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the adipose tissue of an animal following slaughter and removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000051 ! dressed carcass fat content created_by: caripark creation_date: 2011-10-26T10:24:42Z [Term] id: PT:0000028 name: loin fat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the adipose tissue in the cut of meat from the back of certain species" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000067 ! loin composition trait created_by: caripark creation_date: 2011-10-26T10:37:29Z [Term] id: PT:0000029 name: shoulder bone weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the skeletal tissue in the cut of meat from the upper portion of the front leg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000072 ! shoulder composition trait created_by: caripark creation_date: 2011-10-26T10:41:54Z [Term] id: PT:0000030 name: meat water content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of moisture in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat moisture content" EXACT [] xref: ATOL:0001668 is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2011-10-26T10:43:27Z [Term] id: PT:0000031 name: milk fatty acid cis-10-C17:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a seventeen-carbon backbone and a cis double bond at C-10" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_sheep synonym: "milk cis-10-heptadecenoic acid content" EXACT [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2011-10-26T10:57:39Z [Term] id: PT:0000032 name: milk fatty acid cis-11-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_sheep synonym: "milk cis-11-octadecenoic acid content" EXACT [] synonym: "milk cis-vaccenic acid content" EXACT [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2011-10-26T11:12:58Z [Term] id: PT:0000033 name: thigh bone weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the skeletal tissue in the part of a bird consisting of the femur and surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000084 ! thigh composition trait created_by: caripark creation_date: 2011-10-26T11:29:03Z [Term] id: PT:0000034 name: meat fatty acid cis-11-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat cis-vaccenic acid content" EXACT [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2011-11-09T03:23:17Z [Term] id: PT:0000035 name: meat fatty acid cis-10-C17:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of a monounsaturated fatty acid with a seventeen-carbon backbone and a cis double bond at C-10" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat cis-10-heptadecenoic acid content" EXACT [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2011-11-09T03:27:14Z [Term] id: PT:0000036 name: meat omega-3 polyunsaturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of polyunsaturated fatty acids in which the first unsaturated bond is in the third position from the omega carbon" [MeSH:D015525 "fatty acids, omega-3"] subset: slim_pig is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2011-11-09T03:42:47Z [Term] id: PT:0000037 name: meat fatty acid C15:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C15H30O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "meat pentadecanoic acid content" EXACT [] synonym: "meat pentadecylic acid content" EXACT [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2011-11-09T03:47:48Z [Term] id: PT:0000038 name: meat conjugated linoleic acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of any/all isomers of linoleic acid in which the double bonds are conjugated (double bonds alternate with single bonds); found especially in meat and dairy products derived from ruminants" [MeSH:D044243 "linoleic acids, conjugated", VTO:INRA "INRA curator"] subset: slim_pig is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2011-11-09T04:02:50Z [Term] id: PT:0000039 name: ham fat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the adipose tissue in the cut of meat from the hind leg of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] is_a: PT:0000064 ! ham composition trait created_by: caripark creation_date: 2011-11-09T04:08:36Z [Term] id: PT:0000040 name: loin size trait namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the cut of meat from the back of certain species" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000065 ! loin trait created_by: caripark creation_date: 2011-11-17T02:25:40Z [Term] id: PT:0000041 name: rib weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of beef spanning the sixth through twelfth ribs" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle is_a: PT:0000059 ! rib trait created_by: caripark creation_date: 2011-11-18T09:17:39Z [Term] id: PT:0000042 name: ham size trait namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the cut of meat from the hind leg of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000063 ! ham trait created_by: caripark creation_date: 2011-11-18T09:51:03Z [Term] id: PT:0000043 name: ham fat thickness namespace: Product.ontology def: "any measurable or observable characteristic related to the distance from one side to the other of the external layer of fat on the ham" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000064 ! ham composition trait created_by: caripark creation_date: 2011-11-18T10:27:05Z [Term] id: PT:0000044 name: egg odor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the perceived intensity of the smell of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000026 ! egg organoleptic trait created_by: caripark creation_date: 2011-11-18T11:16:13Z [Term] id: PT:0000045 name: egg shell stiffness namespace: Product.ontology def: "any measurable or observable characteristic related to the degree of elasticity or flexibility of the outermost protective covering of the egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0002122 is_a: PT:0010099 ! egg physiology trait created_by: caripark creation_date: 2011-11-18T12:40:55Z [Term] id: PT:0000046 name: meat estrone content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of this estrogenic hormone, C18H22O2, in muscle or its associated fat" [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] subset: slim_pig is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2011-11-18T01:29:14Z [Term] id: PT:0000047 name: meat glucose-6-phosphate content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of an ester of glucose with phosphate attached to carbon atom 6" [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] subset: slim_pig is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2011-11-18T01:37:51Z [Term] id: PT:0000048 name: dressed carcass size trait namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0010450 ! dressed carcass trait created_by: caripark creation_date: 2011-12-14T01:14:43Z [Term] id: PT:0000049 name: dressed carcass composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010450 ! dressed carcass trait created_by: caripark creation_date: 2011-12-14T01:21:48Z [Term] id: PT:0000050 name: dressed carcass bone content namespace: Product.ontology def: "any measurable or observable characteristic related to the propoortion or amount of skeletal tissue in the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000049 ! dressed carcass composition trait created_by: caripark creation_date: 2011-12-14T01:26:59Z [Term] id: PT:0000051 name: dressed carcass fat content namespace: Product.ontology def: "any measurable or observable characteristic related to the propoortion or amount of adipose tissue in the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000049 ! dressed carcass composition trait created_by: caripark creation_date: 2011-12-14T02:01:27Z [Term] id: PT:0000052 name: dressed carcass bone percentage namespace: Product.ontology def: "any measurable or observable characteristic related to relative heaviness of the skeletal tissue in the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000050 ! dressed carcass bone content created_by: caripark creation_date: 2011-12-14T01:30:18Z [Term] id: PT:0000053 name: dressed carcass muscle content namespace: Product.ontology def: "any measurable or observable characteristic related to the propoortion or amount of muscle tissue in the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000049 ! dressed carcass composition trait created_by: caripark creation_date: 2011-12-14T01:56:46Z [Term] id: PT:0000054 name: dressed carcass fat percentage namespace: Product.ontology def: "any measurable or observable characteristic related to relative heaviness of the adipose tissue in the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000051 ! dressed carcass fat content created_by: caripark creation_date: 2011-12-14T02:02:51Z [Term] id: PT:0000055 name: dressed carcass muscle percentage namespace: Product.ontology def: "any measurable or observable characteristic related to relative heaviness of the muscle tissue in the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000053 ! dressed carcass muscle content created_by: caripark creation_date: 2011-12-14T01:58:56Z [Term] id: PT:0000056 name: dressed carcass subdivision trait namespace: Product.ontology def: "any measurable or observable characteristic related to an anatomical structure which is a subpart of the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0010450 ! dressed carcass trait created_by: caripark creation_date: 2011-12-14T02:30:18Z [Term] id: PT:0000057 name: rib thickness namespace: Product.ontology def: "any measurable or observable characteristic related to the thickness of the muscle layer in the cut of beef spanning the sixth through twelfth ribs" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle is_a: PT:0000059 ! rib trait created_by: caripark creation_date: 2011-12-14T02:38:21Z [Term] id: PT:0000058 name: drumstick trait namespace: Product.ontology def: "any measurable or observable characteristic related to the lower hindlimb of a bird, consisting of the tibia and the surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-14T02:52:58Z [Term] id: PT:0000059 name: rib trait namespace: Product.ontology def: "any measurable or observable characteristic related to the cut of beef spanning the sixth through twelfth ribs" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-14T02:55:20Z [Term] id: PT:0000060 name: drumstick percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the lower hindlimb of a bird, consisting of the tibia and the surrounding muscle and skin, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000074 ! drumstick size is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2011-12-14T02:56:47Z [Term] id: PT:0000061 name: belly trait namespace: Product.ontology def: "any measurable or observable characteristic related to the cut of meat obtained from the underside of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-14T03:40:16Z [Term] id: PT:0000062 name: shoulder trait namespace: Product.ontology def: "any measurable or observable characteristic related to the cut of meat from the upper portion of the front leg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-14T03:44:57Z [Term] id: PT:0000063 name: ham trait namespace: Product.ontology def: "any measurable or observable characteristic related to the cut of meat from the hind leg of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-15T09:38:14Z [Term] id: PT:0000064 name: ham composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the cut of meat from the hind leg of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000063 ! ham trait is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2011-12-15T09:40:25Z [Term] id: PT:0000065 name: loin trait namespace: Product.ontology def: "any measurable or observable characteristic related to the cut of meat from the back of certain species" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-15T10:07:54Z [Term] id: PT:0000066 name: loin percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the back of certain species, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep synonym: "loin yield" EXACT [] is_a: PT:0000040 ! loin size trait created_by: caripark creation_date: 2011-12-15T10:09:40Z [Term] id: PT:0000067 name: loin composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the cut of meat from the back of certain species" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000065 ! loin trait created_by: caripark creation_date: 2011-12-15T10:16:16Z [Term] id: PT:0000068 name: belly size trait namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the cut of meat obtained from the underside of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000061 ! belly trait created_by: caripark creation_date: 2011-12-15T10:17:52Z [Term] id: PT:0000069 name: belly composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the cut of meat obtained from the underside of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000061 ! belly trait created_by: caripark creation_date: 2011-12-15T10:18:04Z [Term] id: PT:0000070 name: ham percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the hind leg of the pig, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000042 ! ham size trait is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2011-12-15T10:30:50Z [Term] id: PT:0000071 name: shoulder size namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the cut of meat from the upper portion of the front leg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000062 ! shoulder trait created_by: caripark creation_date: 2011-12-15T10:34:15Z [Term] id: PT:0000072 name: shoulder composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the cut of meat from the upper portion of the front leg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000062 ! shoulder trait created_by: caripark creation_date: 2011-12-15T10:34:15Z [Term] id: PT:0000073 name: shoulder percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the upper portion of the front leg, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep synonym: "shoulder yield" EXACT [] is_a: PT:0000071 ! shoulder size created_by: caripark creation_date: 2011-12-15T10:37:16Z [Term] id: PT:0000074 name: drumstick size namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the lower hindlimb of a bird, consisting of the tibia and the surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000058 ! drumstick trait created_by: caripark creation_date: 2011-12-15T10:38:27Z [Term] id: PT:0000075 name: drumstick composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the lower hindlimb of a bird, consisting of the tibia and the surrounding meat and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000058 ! drumstick trait is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2011-12-15T10:38:27Z [Term] id: PT:0000076 name: ham fat percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the adipose tissue in the cut of meat from the hind leg of the pig, expressed as a percentage of ham weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000064 ! ham composition trait created_by: caripark creation_date: 2011-12-15T10:43:23Z [Term] id: PT:0000077 name: belly percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat obtained from the underside of the pig, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000068 ! belly size trait created_by: caripark creation_date: 2011-12-15T10:45:16Z [Term] id: PT:0000078 name: belly muscle percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the muscle tissue in the cut of meat obtained from the underside of the pig, expressed as a percentage of belly weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "belly meat percentage" RELATED [] is_a: PT:0000069 ! belly composition trait created_by: caripark creation_date: 2011-12-15T10:45:48Z [Term] id: PT:0000079 name: shoulder bone percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the skeletal tissue in the cut of meat from the upper portion of the front leg, expressed as a percentage of shoulder weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000072 ! shoulder composition trait created_by: caripark creation_date: 2011-12-15T10:57:18Z [Term] id: PT:0000080 name: shoulder fat percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the adipose tissue in the cut of meat from the upper portion of the front leg, expressed as a percentage of shoulder weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000072 ! shoulder composition trait created_by: caripark creation_date: 2011-12-15T10:57:18Z [Term] id: PT:0000081 name: shoulder muscle percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the upper portion of the front leg, with fat and bone removed, expressed as a percentage of shoulder weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000072 ! shoulder composition trait created_by: caripark creation_date: 2011-12-15T10:57:18Z [Term] id: PT:0000082 name: thigh trait namespace: Product.ontology def: "any measurable or observable characteristic related to the part of a bird consisting of the femur and surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-15T11:02:16Z [Term] id: PT:0000083 name: thigh muscle percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the muscle tissue surrounding the femur of a bird, expressed as a percentage of thigh weight or carcass/body weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000084 ! thigh composition trait created_by: caripark creation_date: 2011-12-15T11:04:46Z [Term] id: PT:0000084 name: thigh composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the part of a bird consisting of the femur and surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000082 ! thigh trait is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2011-12-15T11:05:39Z [Term] id: PT:0000085 name: leg trait namespace: Product.ontology def: "any measurable or observable characteristic related to the cut(s) of meat comprising the hind limb(s)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-15T11:41:23Z [Term] id: PT:0000086 name: leg weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut(s) of meat comprising the hind limb(s)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000089 ! leg size trait created_by: caripark creation_date: 2011-12-15T11:42:50Z [Term] id: PT:0000087 name: leg percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut(s) of meat comprising the hind limb(s), expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000089 ! leg size trait created_by: caripark creation_date: 2011-12-15T11:42:50Z [Term] id: PT:0000088 name: leg muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of muscle tissue in the cut(s) of meat comprising the hind limb(s)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2011-12-15T11:42:50Z [Term] id: PT:0000089 name: leg size trait namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the cut(s) of meat comprising the hind limb(s)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000085 ! leg trait created_by: caripark creation_date: 2011-12-15T11:44:53Z [Term] id: PT:0000090 name: breast trait (poultry) namespace: Product.ontology def: "any measurable or observable characteristic related to the pectoralis major and pectoralis minor" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2011-12-15T11:45:35Z [Term] id: PT:0000091 name: total breast muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the combined pectoralis major and pectoralis minor" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn synonym: "breast weight" EXACT [] is_a: PT:0000090 ! breast trait (poultry) created_by: caripark creation_date: 2011-12-15T12:04:35Z [Term] id: PT:0000092 name: total breast muscle percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the combined pectoralis major and pectoralis minor, expressed as a percentage of carcass/body weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000090 ! breast trait (poultry) created_by: caripark creation_date: 2011-12-15T12:04:35Z [Term] id: PT:0000093 name: pectoralis major weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the larger muscle of the breast" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn synonym: "fillet weight" EXACT [] is_a: PT:0000090 ! breast trait (poultry) created_by: caripark creation_date: 2011-12-15T12:04:35Z [Term] id: PT:0000094 name: pectoralis minor weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the smaller muscle of the breast" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn synonym: "tender weight" EXACT [] synonym: "tenderloin weight" EXACT [] is_a: PT:0000090 ! breast trait (poultry) created_by: caripark creation_date: 2011-12-15T12:04:35Z [Term] id: PT:0000095 name: pectoralis major percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the larger muscle of the breast, expressed as a percentage of carcass/body weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000090 ! breast trait (poultry) created_by: caripark creation_date: 2011-12-15T03:13:15Z [Term] id: PT:0000096 name: pectoralis minor percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the smaller muscle of the breast, expressed as a percentage of carcass/body weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000090 ! breast trait (poultry) created_by: caripark creation_date: 2011-12-15T03:13:15Z [Term] id: PT:0000097 name: leg composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the qualitative or quantitative makeup of the cut(s) of meat comprising the hind limb(s)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000085 ! leg trait created_by: caripark creation_date: 2011-12-20T12:24:01Z [Term] id: PT:0000098 name: intramuscular fat content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of fat-storing cells/tissue present within skeletal muscle" [PMID:17705816] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep synonym: "marbling" NARROW [] xref: VT:0010044 is_a: PT:0010452 ! meat lipid content created_by: caripark creation_date: 2012-03-27T03:06:14Z [Term] id: PT:0000099 name: intermuscular fat content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of fat-storing tissue present between the muscles" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: VT:1000465 is_a: PT:0010452 ! meat lipid content created_by: caripark creation_date: 2012-03-27T03:14:26Z [Term] id: PT:0000100 name: meat fatty acid C10:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C10H20O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat capric acid content" EXACT [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2012-03-29T11:03:37Z [Term] id: PT:0000101 name: meat fatty acid cis-10-C15:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of a monounsaturated fatty acid with a fifteen-carbon backbone and a cis double bond at C-10" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat cis-10-pentadecenoic acid content" EXACT [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2012-03-29T11:09:45Z [Term] id: PT:0000102 name: meat fatty acid C12:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C12H24O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat dodecanoic acid content" EXACT [] synonym: "meat lauric acid content" EXACT [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2012-03-29T11:14:07Z [Term] id: PT:0000103 name: wing trait namespace: Product.ontology def: "any measurable or observable characteristic related to the forelimb of a bird, consisting of the humerus, radius, ulna, and metacarpus, and all associated muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2012-03-29T12:48:52Z [Term] id: PT:0000104 name: wing percentage namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the forelimb of a bird, consisting of the humerus, radius, ulna, and metacarpus, and all associated muscle and skin, expressed as a percentage of carcass weight" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000103 ! wing trait created_by: caripark creation_date: 2012-03-29T12:49:33Z [Term] id: PT:0000105 name: meat physiochemical trait namespace: Product.ontology def: "any measurable or observable characteristic related to both physiological and chemical properties of meat (muscle and associated fat and connective tissue, post-exsanguination)" [ATOL:0000065, ISBN:9780702027888 "Saunders Comprehensive Veterinary Dictionary"] xref: ATOL:0000065 is_a: PT:0010447 ! meat trait created_by: caripark creation_date: 2012-10-17T03:11:23Z [Term] id: PT:0000106 name: meat conductivity namespace: Product.ontology def: "any measurable or observable characteristic related to the ability of meat to conduct electrical current" [VT:1000436] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: ATOL:0000066 is_a: PT:0000105 ! meat physiochemical trait created_by: caripark creation_date: 2012-10-17T03:14:31Z [Term] id: PT:0000107 name: meat temperature namespace: Product.ontology def: "any measurable or observable characteristic related to the degree of hotness or coldness of meat" [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: ATOL:0000067 is_a: PT:0000105 ! meat physiochemical trait created_by: caripark creation_date: 2012-10-17T03:18:35Z [Term] id: ID:0000001 name: linked ontologies created_by: caripark creation_date: 2012-10-17T03:24:49Z [Term] id: PT:0004047 name: milk composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the amounts of proteins, minerals, nutrients, gases, or other substances in milk" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010448 ! milk trait [Term] id: PT:0010003 name: milk alpha-lactalbumin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of alpha-lactalbumin, an enzyme that catalyzes lactose synthesis in mammary epithelial cells" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk alpha-lactalbumin concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2009-11-30T11:04:47Z [Term] id: PT:0010007 name: total milk volume trait namespace: Product.ontology def: "any measurable or observable characteristic related to the total volume of milk produced by the mammary gland" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_obsolete: true created_by: caripark creation_date: 2009-11-30T12:14:20Z [Term] id: PT:0010008 name: stripping milk volume trait namespace: Product.ontology def: "any measurable or observable characteristic related to the volume of milk obtained following machine milking, when the udder is manipulated to release milk trapped below the level of the teat" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_obsolete: true created_by: caripark creation_date: 2009-11-30T12:21:38Z [Term] id: PT:0010009 name: residual milk volume trait namespace: Product.ontology def: "any measurable or observable characteristic related to the volume of milk remaining in the mammary gland following machine milking and hand or machine stripping" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_obsolete: true created_by: caripark creation_date: 2009-11-30T12:21:38Z [Term] id: PT:0010015 name: egg specific gravity trait namespace: Product.ontology def: "any measurable or observable characteristic related to the ratio of the weight of an egg to the weight of an equal volume of water" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_obsolete: true created_by: caripark creation_date: 2009-12-03T11:08:53Z [Term] id: PT:0010020 name: milk structure trait namespace: Product.ontology def: "any measurable or observable characteristic related to the physical makeup or arrangement of milk" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk structural trait" EXACT [] is_a: PT:0010448 ! milk trait created_by: caripark creation_date: 2010-05-27T09:37:59Z [Term] id: PT:0010026 name: dressed carcass yield namespace: Product.ontology def: "any measurable or observable characteristic related to the yield obtained after processing to remove the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] comment: Parts removed during processing vary by species:\nCattle: head, hide, digestive tract, internal organs, legs (from knee/hock down)\nPig: head, hair, toenails, digestive tract, internal organs\nChicken: head, neck, feathers, digestive tract, internal organs, feet\nSheep: head, hide, digestive tract, internal organs, hooves (from epiphyseal plate of metacarpal or break/spool joint down) subset: slim_cattle subset: slim_pig subset: slim_sheep is_obsolete: true created_by: caripark creation_date: 2009-12-14T12:47:38Z [Term] id: PT:0010027 name: milk fat yield namespace: Product.ontology def: "any measurable or observable characteristic related to the total amount of milk fat produced" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2009-12-14T04:00:02Z [Term] id: PT:0010028 name: milk protein yield namespace: Product.ontology def: "any measurable or observable characteristic related to the total amount of milk protein produced" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2009-12-14T04:02:02Z [Term] id: PT:0010029 name: milk alpha-lactalbumin yield namespace: Product.ontology def: "any measurable or observable characteristic related to the total amount in milk of alpha-lactalbumin, an enzyme that catalyzes lactose synthesis in mammary epithelial cells" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_a: PT:0010028 ! milk protein yield created_by: caripark creation_date: 2009-12-15T08:42:38Z [Term] id: PT:0010099 name: egg physiology trait namespace: Product.ontology def: "any measurable or observable characteristic related to the function of or processes in an ovum in combination with its nutrient stores and protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0010446 ! egg trait created_by: caripark creation_date: 2010-03-19T11:07:06Z [Term] id: PT:0010256 name: colostrum trait namespace: Product.ontology def: "any measurable or observable characteristic related to the first secretion of the mammary gland before milk production; provides energy and passive immunity to newborn offspring" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0000001 ! livestock product trait created_by: caripark creation_date: 2010-05-19T03:36:39Z [Term] id: PT:0010257 name: colostrum immunoglobulin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of proteins that function as a primary mechanism for protection against disease present in the first secretion of the mammary gland before milk production" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010256 ! colostrum trait created_by: caripark creation_date: 2010-05-19T03:47:57Z [Term] id: PT:0010261 name: milk fat composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the amounts of proteins, minerals, nutrients, gases, or other substances in milk fat" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-19T04:15:04Z [Term] id: PT:0010264 name: colostrum yield namespace: Product.ontology def: "any measurable or observable characteristic related to the amount of colostrum produced, the first secretion of the mammary gland before milk production" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2010-05-20T03:30:45Z [Term] id: PT:0010265 name: colostrum somatic cell count namespace: Product.ontology def: "any measurable or observable characteristic related to the number of somatic cells (leukocytes and epithelial cells) present in colostrum" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010256 ! colostrum trait created_by: caripark creation_date: 2010-05-20T03:34:56Z [Term] id: PT:0010266 name: milk beta-lactoglobulin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of beta-lactoglobulin, which may bind retinol; this milk constituent is allergenic" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk beta-lactoglobulin concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-20T04:06:39Z [Term] id: PT:0010267 name: milk whey acidic protein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of whey acidic protein (WAP), a major protein of whey in rodents and rabbits (as well as marsupials), which belongs to the four disulfide core family" [VTO:INRA "INRA curator"] subset: slim_pig synonym: "milk WAP content" RELATED [] synonym: "milk whey acidic protein concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-20T04:09:37Z [Term] id: PT:0010268 name: milk lactoferrin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of lactoferrin, a globular multifunctional protein with antimicrobial activity; part of innate defense" [VTO:INRA "INRA curator"] subset: slim_cattle synonym: "milk lactoferrin concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-20T04:09:37Z [Term] id: PT:0010269 name: colostrum hormone content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone" [MGI:MP "Definition from the Mammalian Phenotype ontology", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "colostrum hormone concentration" RELATED [] is_a: PT:0010256 ! colostrum trait created_by: caripark creation_date: 2010-05-21T09:27:13Z [Term] id: PT:0010270 name: colostrum steroid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of members of the hormone family that includes estrogens, progesterone, glucocorticoids, and androgens" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "colostrum steroid concentration" RELATED [] is_a: PT:0010269 ! colostrum hormone content created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: PT:0010271 name: colostrum leptin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of the peptide hormone secreted by white adipocytes and believed to regulate food intake and energy balance" [MGI:MP "Definition from the Mammalian Phenotype ontology", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "colostrum leptin concentration" RELATED [] is_a: PT:0010269 ! colostrum hormone content created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: PT:0010272 name: colostrum prolactin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of the hormone that stimulates milk secretion" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "colostrum prolactin concentration" RELATED [] is_a: PT:0010269 ! colostrum hormone content created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: PT:0010273 name: colostrum growth factor content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of any factors which promote cell proliferation" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "colostrum growth factor concentration" RELATED [] is_a: PT:0010269 ! colostrum hormone content created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: PT:0010274 name: milk dry matter content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of dry weight (mass of solids) in milk" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-21T10:43:34Z [Term] id: PT:0010275 name: milk hormone content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone" [MGI:MP "Definition from the Mammalian Phenotype ontology", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "hormones in milk" RELATED [] synonym: "milk hormone concentration" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-21T11:21:36Z [Term] id: PT:0010276 name: milk steroid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of members of the hormone family that includes estrogens, progesterone, glucocorticoids, and androgens" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk steroid concentration" RELATED [] is_a: PT:0010275 ! milk hormone content created_by: caripark creation_date: 2010-05-21T11:26:27Z [Term] id: PT:0010277 name: milk leptin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of the peptide hormone secreted by white adipocytes and believed to regulate food intake and energy balance" [MGI:MP "Definition from the Mammalian Phenotype ontology", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk leptin concentration" RELATED [] is_a: PT:0010275 ! milk hormone content created_by: caripark creation_date: 2010-05-21T11:26:27Z [Term] id: PT:0010279 name: milk growth factor content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of any factors which promote cell proliferation" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk growth factor concentration" RELATED [] is_a: PT:0010275 ! milk hormone content created_by: caripark creation_date: 2010-05-21T11:26:27Z [Term] id: PT:0010280 name: milk casein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of casein, the predominant phosphoprotein in milk" [VTO:INRA "INRA curator"] comment: accounts for nearly 80% of the protein in cow's milk and cheese synonym: "milk casein concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-21T12:20:10Z [Term] id: PT:0010281 name: milk alpha-S1-casein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of the most abundant casein in the milk of ruminants and rabbits" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk alpha-S1-casein concentration" RELATED [] is_a: PT:0000002 ! milk alpha-casein content created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: PT:0010282 name: milk alpha-S2-casein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of alpa-S2-casein, a minor form of casein" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk alpha-S2-casein concentration" RELATED [] is_a: PT:0000002 ! milk alpha-casein content created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: PT:0010283 name: milk kappa-casein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of kappa-casein, a casein which plays a crucial role in micellar structure; its concentration determines micellar size" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk kappa-casein concentration" RELATED [] is_a: PT:0010280 ! milk casein content created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: PT:0010284 name: milk beta-casein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of the beta fraction of the casein phosphoprotein in milk" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk beta-casein concentration" RELATED [] is_a: PT:0010280 ! milk casein content created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: PT:0010285 name: milk nitrogen content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of this element in milk" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk nitrogen" RELATED [] synonym: "milk nitrogen concentration" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-21T02:13:16Z [Term] id: PT:0010286 name: milk lactose yield namespace: Product.ontology def: "any measurable or observable characteristic related to the total amount in milk of lactose, which is the major sugar found in colostrum and milk; it is composed of a molecule of glucose and a molecule of galactose" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "lactose yield" EXACT [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-21T02:22:29Z [Term] id: PT:0010287 name: milk lactose content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of lactose, the major sugar found in colostrum and milk; it is composed of one molecule of glucose and one molecule of galactose" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk lactose concentration" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-21T02:24:28Z [Term] id: PT:0010288 name: milk mineral content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of any inorganic substance that has importance in body functions" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk mineral concentration" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-21T02:44:27Z [Term] id: PT:0010289 name: milk mineral yield namespace: Product.ontology def: "any measurable or observable characteristic related to the total amount in milk of any inorganic substance that has importance in body functions" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-21T02:55:44Z [Term] id: PT:0010290 name: milk calcium content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this metallic element" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk calcium concentration" RELATED [] is_a: PT:0010288 ! milk mineral content created_by: caripark creation_date: 2010-05-21T02:58:45Z [Term] id: PT:0010291 name: milk potassium content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this metallic element" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk potassium concentration" RELATED [] is_a: PT:0010288 ! milk mineral content created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: PT:0010292 name: milk sodium content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this metallic element" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk sodium concentration" RELATED [] is_a: PT:0010288 ! milk mineral content created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: PT:0010293 name: milk phosphorus content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this nonmetallic element which occurs naturally in phosphates" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk phosphorus concentration" RELATED [] is_a: PT:0010288 ! milk mineral content created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: PT:0010294 name: milk chloride content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of any binary compound of chlorine" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk chloride concentration" RELATED [] is_a: PT:0010288 ! milk mineral content created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: PT:0010295 name: milk magnesium content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this metallic element" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk magnesium concentration" RELATED [] is_a: PT:0010288 ! milk mineral content created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: PT:0010296 name: milk flavor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the subjective scoring scale ranging from no flavor to intense flavor" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010410 ! milk organoleptic trait created_by: caripark creation_date: 2010-05-21T03:35:40Z [Term] id: PT:0010297 name: milk odor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the milk scoring scale ranging from no odor to intense odor" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010410 ! milk organoleptic trait created_by: caripark creation_date: 2010-05-21T03:35:40Z [Term] id: PT:0010298 name: milk texture trait namespace: Product.ontology def: "any measurable or observable characteristic related to the arrangement of the components that form the physical structure of milk" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010020 ! milk structure trait is_a: PT:0010410 ! milk organoleptic trait created_by: caripark creation_date: 2010-05-21T03:35:40Z [Term] id: PT:0010299 name: milk color namespace: Product.ontology def: "any measurable or observable characteristic related to the color of milk" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010410 ! milk organoleptic trait created_by: caripark creation_date: 2010-05-21T03:41:11Z [Term] id: PT:0010300 name: milk color redness namespace: Product.ontology def: "any measurable or observable characteristic related to the objective reflective measure of milk color along the red to green color scale; typically measured by a colorimeter" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010299 ! milk color created_by: caripark creation_date: 2010-05-24T08:29:41Z [Term] id: PT:0010301 name: milk color reflectivity namespace: Product.ontology def: "any measurable or observable characteristic related to the objective milk color variable for lightness/darkness, based on the amount of light reflected off the surface of the milk; typically measured by a colorimeter" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010299 ! milk color created_by: caripark creation_date: 2010-05-24T08:29:41Z [Term] id: PT:0010302 name: milk color yellowness namespace: Product.ontology def: "any measurable or observable characteristic related to the objective reflective measure of milk color along the yellow to blue color scale; typically measured by a colorimeter" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010299 ! milk color created_by: caripark creation_date: 2010-05-24T08:29:41Z [Term] id: PT:0010303 name: milk fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in milk fat; they are saturated and unsaturated" [MeSH:D005227 "fatty acids"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-24T09:11:45Z [Term] id: PT:0010304 name: milk saturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in milk fat; the carbon chain contains only single carbon-carbon bonds" [MeSH:D005227 "fatty acids"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010303 ! milk fatty acid content created_by: caripark creation_date: 2010-05-24T09:17:14Z [Term] id: PT:0010305 name: milk unsaturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in milk fat; the carbon chain has one or more double or triple carbon-carbon bonds" [MeSH:D005231 "fatty acids, unsaturated"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010303 ! milk fatty acid content created_by: caripark creation_date: 2010-05-24T09:18:07Z [Term] id: PT:0010306 name: milk fatty acid C4:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a four-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk butyric acid concentration" EXACT [] synonym: "milk butyric acid content" RELATED [] synonym: "milk butyric acid percentage" RELATED [] synonym: "milk fatty acid C4:0 concentration" RELATED [] synonym: "milk fatty acid C4:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010307 name: milk fatty acid C5:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a five-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C5:0 concentration" RELATED [] synonym: "milk fatty acid C5:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010308 name: milk fatty acid C6:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a six-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk caproic acid concentration" EXACT [] synonym: "milk caproic acid content" RELATED [] synonym: "milk caproic acid percentage" RELATED [] synonym: "milk fatty acid C6:0 concentration" RELATED [] synonym: "milk fatty acid C6:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010309 name: milk fatty acid C7:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a seven-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C7:0 concentration" RELATED [] synonym: "milk fatty acid C7:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010310 name: milk fatty acid C8:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with an eight-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk caprylic acid concentration" EXACT [] synonym: "milk caprylic acid content" RELATED [] synonym: "milk caprylic acid percentage" RELATED [] synonym: "milk fatty acid C8:0 concentration" RELATED [] synonym: "milk fatty acid C8:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010311 name: milk fatty acid C9:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a nine-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C9:0 concentration" RELATED [] synonym: "milk fatty acid C9:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010312 name: milk fatty acid C10:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a ten-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk capric acid concentration" EXACT [] synonym: "milk capric acid content" RELATED [] synonym: "milk capric acid percentage" RELATED [] synonym: "milk fatty acid C10:0 concentration" RELATED [] synonym: "milk fatty acid C10:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010313 name: milk fatty acid C11:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with an eleven-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C11:0 concentration" RELATED [] synonym: "milk fatty acid C11:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010314 name: milk fatty acid C12:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a twelve-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C12:0 concentration" RELATED [] synonym: "milk fatty acid C12:0 percentage" RELATED [] synonym: "milk lauric acid concentration" EXACT [] synonym: "milk lauric acid content" RELATED [] synonym: "milk lauric acid percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: PT:0010315 name: milk fatty acid C14:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a fourteen-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C14:0 concentration" RELATED [] synonym: "milk fatty acid C14:0 percentage" RELATED [] synonym: "milk myristic acid concentration" EXACT [] synonym: "milk myristic acid content" RELATED [] synonym: "milk myristic acid percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:13:36Z [Term] id: PT:0010316 name: milk fatty acid C16:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a sixteen-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C16:0 concentration" RELATED [] synonym: "milk fatty acid C16:0 percentage" RELATED [] synonym: "milk palmitic acid concentration" EXACT [] synonym: "milk palmitic acid content" RELATED [] synonym: "milk palmitic acid percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: PT:0010317 name: milk fatty acid C17:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a seventeen-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C17:0 concentration" RELATED [] synonym: "milk fatty acid C17:0 percentage" RELATED [] synonym: "milk margaric acid concentration" EXACT [] synonym: "milk margaric acid content" RELATED [] synonym: "milk margaric acid percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: PT:0010318 name: milk fatty acid C18:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with an eighteen-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C18:0 concentration" RELATED [] synonym: "milk fatty acid C18:0 percentage" RELATED [] synonym: "milk stearic acid concentration" EXACT [] synonym: "milk stearic acid content" RELATED [] synonym: "milk stearic acid percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: PT:0010319 name: milk fatty acid C20:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a twenty-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk arachidic acid content" EXACT [] synonym: "milk eicosanoic acid content" EXACT [] synonym: "milk fatty acid C20:0 concentration" RELATED [] synonym: "milk fatty acid C20:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: PT:0010320 name: milk fatty acid C22:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of a saturated fatty acid with a twenty-two-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C22:0 concentration" RELATED [] synonym: "milk fatty acid C22:0 percentage" RELATED [] is_a: PT:0010304 ! milk saturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: PT:0010321 name: milk trans fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of unsaturated fatty acids containing at least one double bond in the trans configuration" [MeSH:D044242 "trans fatty acids", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk trans fatty acid concentration" RELATED [] synonym: "milk trans fatty acid percentage" RELATED [] is_a: PT:0010305 ! milk unsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: PT:0010322 name: milk omega-3 fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of unsaturated fatty acids in which the first unsaturated bond is in the third position from the omega carbon (C18:3, n-3; C20:5, n-3; C22:6, n-3)" [MeSH:D015525 "fatty acids, omega-3", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk omega-3 fatty acid concentration" RELATED [] synonym: "milk omega-3 fatty acid percentage" RELATED [] is_a: PT:0010305 ! milk unsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: PT:0010323 name: milk omega-6 fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of unsaturated fatty acids in which the first unsaturated bond is in the sixth position from the omega carbon (C18:2, n-6; C18:3, n-6; C20:2, n-6; C20:3, n-6; C20:4, n-6; C22:2, n-6; C22:4, n-6; C22:5, n-6)" [MeSH:D043371 "fatty acids, omega-6", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk omega-6 fatty acid concentration" RELATED [] synonym: "milk omega-6 fatty acid percentage" RELATED [] is_a: PT:0010305 ! milk unsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: PT:0010324 name: milk conjugated linoleic acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of any/all isomers of linoleic acid in which the double bonds are conjugated (double bonds alternate with single bonds); found especially in meat and dairy products derived from ruminants" [MeSH:D044243 "linoleic acids, conjugated", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk CLA concentration" EXACT [] synonym: "milk CLA content" RELATED [] synonym: "milk CLA percentage" RELATED [] synonym: "milk conjugated linoleic acid concentration" RELATED [] synonym: "milk conjugated linoleic acid percentage" RELATED [] is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: PT:0010325 name: milk fatty acid cis-9,cis-12-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated, omega-6 fatty acid with an eighteen-carbon backbone" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C18:2(n-6) concentration" EXACT [] synonym: "milk fatty acid C18:2(n-6) content" RELATED [] synonym: "milk fatty acid C18:2(n-6) percentage" RELATED [] synonym: "milk fatty acid cis-9,cis-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,cis-12-C18:2 percentage" RELATED [] synonym: "milk linoleic acid concentration" EXACT [] synonym: "milk linoleic acid content" RELATED [] synonym: "milk linoleic acid percentage" RELATED [] is_a: PT:0010323 ! milk omega-6 fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T11:11:14Z [Term] id: PT:0010326 name: milk fatty acid cis-9-C14:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a fourteen-carbon backbone and a cis double bond at C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9-C14:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C14:1 percentage" RELATED [] synonym: "milk myristoleic acid concentration" EXACT [] synonym: "milk myristoleic acid content" RELATED [] synonym: "milk myristoleic acid percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T11:19:21Z [Term] id: PT:0010327 name: milk fatty acid cis-11-C16:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a sixteen-carbon backbone and a cis double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-11-C16:1 concentration" RELATED [] synonym: "milk fatty acid cis-11-C16:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010328 name: milk fatty acid cis-9-C17:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a seventeen-carbon backbone and a cis double bond at C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9-C17:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C17:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010329 name: milk fatty acid trans-11-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-11-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-11-C18:1 percentage" RELATED [] synonym: "milk vaccenic acid concentration" EXACT [] synonym: "milk vaccenic acid content" RELATED [] synonym: "milk vaccenic acid percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010330 name: milk fatty acid trans-4-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-4" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-4-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-4-C18:1 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010331 name: milk fatty acid trans-5-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-5" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-5-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-5-C18:1 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010332 name: milk fatty acid trans-6-8-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at either C-6 or C-8" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-6-8-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-6-8-C18:1 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010333 name: milk fatty acid trans-9-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-9-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-9-C18:1 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010334 name: milk fatty acid trans-10-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-10" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-10-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-10-C18:1 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010335 name: milk fatty acid trans-13-14-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at either C-13 or C-14" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-13-14-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-13-14-C18:1 percentage" RELATED [] synonym: "milk fatty acid trans-13/14-C18:1 concentration" EXACT [] synonym: "milk fatty acid trans-13/14-C18:1 content" RELATED [] synonym: "milk fatty acid trans-13/14-C18:1 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: PT:0010336 name: milk fatty acid cis-14/trans-16-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and either a cis double bond at C-14 or a trans double bond at C-16" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-14/trans-16-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-14/trans-16-C18:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: PT:0010337 name: milk fatty acid cis-11-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-11-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-11-C18:1 percentage" RELATED [] is_obsolete: true created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: PT:0010338 name: milk fatty acid cis-12-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-12" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-12-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-12-C18:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: PT:0010339 name: milk fatty acid cis-13-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-13" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-13-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-13-C18:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: PT:0010340 name: milk fatty acid cis-15-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-15" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-15-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-15-C18:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: PT:0010341 name: milk fatty acid cis-9,trans-13-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-9, and a trans double bond at C-13" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9,trans-13-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,trans-13-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: PT:0010342 name: milk fatty acid cis-9,trans-12-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-9, and a trans double bond at C-12" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9,trans-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,trans-12-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: PT:0010343 name: milk fatty acid trans-9,cis-12-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-12, and a trans double bond at C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-9,cis-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,cis-12-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: PT:0010344 name: milk fatty acid trans-9,trans-12-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-9 and C-12" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-9,trans-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,trans-12-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: PT:0010345 name: milk fatty acid trans-9,trans-14-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-9 and C-14" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-9,trans-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,trans-14-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: PT:0010346 name: milk fatty acid trans-11,cis-15-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-11, and a cis double bond at C-15" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-11,cis-15-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,cis-15-C18:2 percentage" RELATED [] is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: PT:0010347 name: milk fatty acid trans-11,trans-15-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-11 and C-15" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-11,trans-15-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,trans-15-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: PT:0010348 name: milk fatty acid cis-9,cis-11-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and cis double bonds at C-9 and C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9,cis-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,cis-11-C18:2 percentage" RELATED [] is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: PT:0010349 name: milk fatty acid cis-9,trans-11-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-9, and a trans double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9,trans-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,trans-11-C18:2 percentage" RELATED [] synonym: "milk rumenic acid concentration" EXACT [] synonym: "milk rumenic acid content" RELATED [] synonym: "milk rumenic acid percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: PT:0010350 name: milk fatty acid cis-12,trans-14-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-12, and a trans double bond at C-14" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-12,trans-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-12,trans-14-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: PT:0010351 name: milk fatty acid trans-7,cis-9-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-7, and a cis double bond at C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-7,cis-9-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-7,cis-9-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: PT:0010352 name: milk fatty acid trans-8,cis-10-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-8, and a cis double bond at C-10" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-8,cis-10-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-8,cis-10-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: PT:0010353 name: milk fatty acid trans-9,cis-11-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-9, and a cis double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-9,cis-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,cis-11-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: PT:0010354 name: milk fatty acid trans-10,cis-12-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-10, and a cis double bond at C-12" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-10,cis-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-10,cis-12-C18:2 percentage" RELATED [] is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: PT:0010355 name: milk fatty acid trans-11,cis-13-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-11, and a cis double bond at C-13" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-11,cis-13-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,cis-13-C18:2 percentage" RELATED [] is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010356 name: milk fatty acid trans-12,cis-14-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-12, and a cis double bond at C-14" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-12,cis-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-12,cis-14-C18:2 percentage" RELATED [] is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010357 name: milk fatty acid trans-7,trans-9-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-7 and C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-7,trans-9-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-7,trans-9-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010358 name: milk fatty acid trans-8,trans-10-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-8 and C-10" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-8,trans-10-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-8,trans-10-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010359 name: milk fatty acid trans-9,trans-11-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-9 and C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-9,trans-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,trans-11-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010360 name: milk fatty acid trans-10,trans-12-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-10 and C-12" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-10,trans-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-10,trans-12-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010361 name: milk fatty acid trans-11,trans-13-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-11 and C-13" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-11,trans-13-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,trans-13-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010362 name: milk fatty acid trans-12,trans-14-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-12 and C-14" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid trans-12,trans-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-12,trans-14-C18:2 percentage" RELATED [] is_a: PT:0010321 ! milk trans fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: PT:0010363 name: milk fatty acid cis-8-C20:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a twenty-carbon backbone and cis double bond at C-8" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-8-C20:1 concentration" RELATED [] synonym: "milk fatty acid cis-8-C20:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: PT:0010364 name: milk fatty acid cis-11-C20:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a twenty-carbon backbone and cis double bond at C-11" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-11-C20:1 concentration" RELATED [] synonym: "milk fatty acid cis-11-C20:1 percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: PT:0010365 name: milk fatty acid C20:4(n-6) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated, omega-6 fatty acid with a twenty-carbon backbone and four double bonds" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk arachidonic acid content" RELATED [] synonym: "milk fatty acid C20:4 n-6 concentration" EXACT [] synonym: "milk fatty acid C20:4 n-6 content" RELATED [] synonym: "milk fatty acid C20:4 n-6 percentage" RELATED [] synonym: "milk fatty acid C20:4(n-6) concentration" RELATED [] synonym: "milk fatty acid C20:4(n-6) percentage" RELATED [] is_a: PT:0010323 ! milk omega-6 fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: PT:0010366 name: milk fatty acid C20:5(n-3) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated, omega-3 fatty acid with a twenty-carbon backbone and five double bonds" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C20:5 n-3 concentration" EXACT [] synonym: "milk fatty acid C20:5 n-3 content" RELATED [] synonym: "milk fatty acid C20:5 n-3 percentage" RELATED [] synonym: "milk fatty acid C20:5(n-3) concentration" RELATED [] synonym: "milk fatty acid C20:5(n-3) percentage" RELATED [] is_a: PT:0010322 ! milk omega-3 fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: PT:0010367 name: milk fatty acid C22:5(n-3) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated, omega-3 fatty acid with a twenty-two-carbon backbone and five double bonds" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C22:5 n-3 concentration" EXACT [] synonym: "milk fatty acid C22:5 n-3 content" RELATED [] synonym: "milk fatty acid C22:5 n-3 percentage" RELATED [] synonym: "milk fatty acid C22:5(n-3) concentration" RELATED [] synonym: "milk fatty acid C22:5(n-3) percentage" RELATED [] is_a: PT:0010322 ! milk omega-3 fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:43:23Z [Term] id: PT:0010368 name: milk fatty acid C22:6(n-3) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated, omega-3 fatty acid with a twenty-two-carbon backbone and six double bonds" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C22:6 n-3 concentration" EXACT [] synonym: "milk fatty acid C22:6 n-3 content" EXACT [] synonym: "milk fatty acid C22:6 n-3 percentage" RELATED [] synonym: "milk fatty acid C22:6(n-3) concentration" RELATED [] synonym: "milk fatty acid C22:6(n-3) percentage" RELATED [] is_a: PT:0010322 ! milk omega-3 fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:43:23Z [Term] id: PT:0010369 name: milk fatty acid C18:3(n-3) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated, omega-3 fatty acid with an eighteen-carbon backbone and three double bonds" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C18:3 n-3 concentration" EXACT [] synonym: "milk fatty acid C18:3 n-3 content" RELATED [] synonym: "milk fatty acid C18:3 n-3 percentage" RELATED [] synonym: "milk fatty acid C18:3(n-3) concentration" RELATED [] synonym: "milk fatty acid C18:3(n-3) percentage" RELATED [] synonym: "milk linolenic acid concentration" EXACT [] synonym: "milk linolenic acid content" RELATED [] synonym: "milk linolenic acid percentage" RELATED [] is_a: PT:0010322 ! milk omega-3 fatty acid content is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:43:23Z [Term] id: PT:0010370 name: milk fatty acid C20:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a twenty-carbon backbone and two double bonds" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid C20:2 concentration" RELATED [] synonym: "milk fatty acid C20:2 percentage" RELATED [] is_a: PT:0010374 ! milk polyunsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:51:22Z [Term] id: PT:0010371 name: milk fatty acid cis-9-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C18:1 percentage" RELATED [] synonym: "milk oleic acid concentration" EXACT [] synonym: "milk oleic acid content" RELATED [] synonym: "milk oleic acid percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:54:00Z [Term] id: PT:0010372 name: milk fatty acid cis-9-C16:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk fat of an unsaturated fatty acid with a sixteen-carbon backbone and a cis double bond at C-9" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fatty acid cis-9-C16:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C16:1 percentage" RELATED [] synonym: "milk palmitoleic acid concentration" EXACT [] synonym: "milk palmitoleic acid content" RELATED [] synonym: "milk palmitoleic acid percentage" RELATED [] is_a: PT:0010373 ! milk monounsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:54:00Z [Term] id: PT:0010373 name: milk monounsaturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in milk fat; the carbon chain has only one double or triple carbon-carbon bond" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010305 ! milk unsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:59:27Z [Term] id: PT:0010374 name: milk polyunsaturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in milk fat; the carbon chain has two or more double or triple carbon-carbon bonds" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010305 ! milk unsaturated fatty acid content created_by: caripark creation_date: 2010-05-24T03:59:27Z [Term] id: PT:0010375 name: milk total calcium content namespace: Product.ontology def: "any measurable or observable characteristic related to the total amount in milk of this metallic element" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2010-05-26T10:26:16Z [Term] id: PT:0010376 name: milk soluble calcium content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of calcium not linked to casein micelles; may be in an associated form (with citrate, inorganic phosphate, or chloride) or a free/ionic form" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk soluble calcium concentration" RELATED [] is_a: PT:0010290 ! milk calcium content created_by: caripark creation_date: 2010-05-26T10:52:07Z [Term] id: PT:0010377 name: milk free calcium content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of unlinked/unassociated calcium in ionic form" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk free calcium concentration" RELATED [] synonym: "milk ionic calcium concentration" EXACT [] synonym: "milk ionic calcium content" RELATED [] is_a: PT:0010376 ! milk soluble calcium content created_by: caripark creation_date: 2010-05-26T10:52:07Z [Term] id: PT:0010378 name: milk colloidal calcium content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of the calcium linked to casein micelles" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk colloidal calcium concentration" RELATED [] is_a: PT:0010290 ! milk calcium content created_by: caripark creation_date: 2010-05-26T10:52:07Z [Term] id: PT:0010379 name: milk epithelial cell count namespace: Product.ontology def: "any measurable or observable characteristic related to the number of cells originating from the mammary epithelium present in milk" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_a: PT:1000072 ! milk somatic cell count created_by: caripark creation_date: 2010-05-26T12:26:48Z [Term] id: PT:0010380 name: milk beta carotene content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of a carotenoid that is the most common precursor to vitamin A" [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk beta carotene concentration" RELATED [] synonym: "milk beta-carotene concentration" RELATED [] synonym: "milk beta-carotene content" EXACT [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:12:38Z [Term] id: PT:0010382 name: milk triglyceride content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this molecule, glycerol esterified at each of its three hydroxyl groups by a fatty acid" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk triacylglycerol concentration" EXACT [] synonym: "milk triacylglycerol content" RELATED [] synonym: "milk triglyceride concentration" RELATED [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:25:32Z [Term] id: PT:0010383 name: milk cholesterol content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of these precursors to steroid hormones and bile salts; also components of plasma membranes" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk cholesterol concentration" RELATED [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:28:32Z [Term] id: PT:0010384 name: milk cholesterol ester content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of a compound formed by the combination of cholesterol and a fatty acid" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk cholesterol ester concentration" RELATED [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: PT:0010385 name: milk diacylglycerol content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of glycerol with two esterified acyl moieties" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk diacylglycerol concentration" RELATED [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: PT:0010386 name: milk monoacylglycerol content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of glycerol with an acyl moiety esterified to position 1 or 2; an intermediate in the degradation and synthesis of lipids" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk monoacylglycerol concentration" RELATED [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: PT:0010387 name: milk phospholipid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of the fat derivatives in which one fatty acid has been replaced by a phosphate group" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk phospholipid concentration" RELATED [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: PT:0010388 name: milk polyphenol content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of compounds containing more than one phenol group" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk polyphenol concentration" RELATED [] is_a: PT:0010261 ! milk fat composition trait created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: PT:0010389 name: milk butyrophilin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of one of the three predominant proteins in the milk fat globule membrane" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk BTN concentration" EXACT [] synonym: "milk BTN content" RELATED [] synonym: "milk butyrophilin concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T02:42:38Z [Term] id: PT:0010390 name: milk xanthine oxidoreductase content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of one of the three predominant proteins in the milk fat globule membrane" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk xanthine oxidoreductase concentration" RELATED [] synonym: "milk XOR concentration" EXACT [] synonym: "milk XOR content" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T02:42:38Z [Term] id: PT:0010391 name: milk adipophilin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of one of the three predominant proteins in the milk fat globule membrane" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk adipophilin concentration" RELATED [] synonym: "milk ADPH concentration" EXACT [] synonym: "milk ADPH content" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T02:42:38Z [Term] id: PT:0010392 name: milk mucin 1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of a cell-surface associated mucin protein" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk MUC1 concentration" EXACT [] synonym: "milk MUC1 content" RELATED [] synonym: "milk mucin 1 concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T02:55:09Z [Term] id: PT:0010393 name: milk CD36 molecule content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this integral membrane protein" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk CD36 molecule concentration" RELATED [] synonym: "milk cluster of differentiation concentration" EXACT [] synonym: "milk cluster of differentiation content" RELATED [] synonym: "milk thrombospondin receptor concentration" EXACT [] synonym: "milk thrombospondin receptor content" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T03:16:10Z [Term] id: PT:0010394 name: milk casein micelle size namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of the supramolecular structure formed by the association of different caseins in suspension in milk" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_a: PT:0010020 ! milk structure trait created_by: caripark creation_date: 2010-05-27T09:53:05Z [Term] id: PT:0010395 name: miik fat globule size namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of native droplets in milk, surrounded by a specific biological membrane" [VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_a: PT:0010020 ! milk structure trait created_by: caripark creation_date: 2010-05-27T09:55:44Z [Term] id: PT:0010396 name: milk stomatin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this integral membrane protein" [VTO:INRA "INRA curator"] subset: slim_cattle synonym: "milk stomatin concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T03:24:19Z [Term] id: PT:0010397 name: milk fat globule-EGF factor 8 protein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of this integrin-binding protein found in milk fat globules" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle synonym: "milk fat globule-EGF factor 8 protein concentration" RELATED [] synonym: "milk lactadherin concentration" EXACT [] synonym: "milk lactadherin content" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T03:31:59Z [Term] id: PT:0010398 name: milk plasmin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of a fibrinolytic enzyme derived from the precursor plasminogen" [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk plasmin concentration" RELATED [] is_a: PT:1000165 ! milk protein content created_by: caripark creation_date: 2010-05-26T03:55:58Z [Term] id: PT:0010399 name: milk urea content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of the chief end product of nitrogen metabolism in mammals" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig synonym: "milk urea concentration" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-26T03:59:27Z [Term] id: PT:0010400 name: milk ammonia content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of an alkaline gas formed by decomposition of nitrogen-containing substances such as proteins and amino acids" [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2010-05-26T03:59:27Z [Term] id: PT:0010401 name: milk fat globule diameter trait namespace: Product.ontology def: "any measurable or observable characteristic related to the distance across the center of native droplets in milk, surrounded by a specific biological membrane" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_obsolete: true created_by: caripark creation_date: 2010-05-27T10:02:26Z [Term] id: PT:0010402 name: milk fat globule surface area trait namespace: Product.ontology def: "any measurable or observable characteristic related to the amount of exposed area on the surface of native droplets in milk, surrounded by a specific biological membrane" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_obsolete: true created_by: caripark creation_date: 2010-05-27T10:02:26Z [Term] id: PT:0010403 name: milk technological trait namespace: Product.ontology def: "any measurable or observable characteristic related to the ability of milk to undergo processing into other dairy products" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010448 ! milk trait created_by: caripark creation_date: 2010-05-27T02:22:17Z [Term] id: PT:0010404 name: milk coagulation time namespace: Product.ontology def: "any measurable or observable characteristic related to the time between the introduction of rennet or lactic acid in the milk and the development of the first particles of coagulated milk" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010403 ! milk technological trait created_by: caripark creation_date: 2010-05-27T02:23:54Z [Term] id: PT:0010405 name: coagulated milk firmness namespace: Product.ontology def: "any measurable or observable characteristic related to the hardness of milk after it has become a soft semisolid" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle synonym: "curd firmness" EXACT [] is_a: PT:0010403 ! milk technological trait created_by: caripark creation_date: 2010-05-27T02:23:54Z [Term] id: PT:0010406 name: milk churning time namespace: Product.ontology def: "any measurable or observable characteristic related to the time required to obtain butter from milk" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010403 ! milk technological trait created_by: caripark creation_date: 2010-05-27T02:23:54Z [Term] id: PT:0010407 name: milk heat stability namespace: Product.ontology def: "any measurable or observable characteristic related to the property of milk to resist coagulating when heated to a high temperature" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010403 ! milk technological trait created_by: caripark creation_date: 2010-05-27T02:23:54Z [Term] id: PT:0010408 name: milk pH namespace: Product.ontology def: "any measurable or observable characteristic related to the relative acidity or alkalinity of milk, as measured by the concentration of hydrogen ion" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010403 ! milk technological trait created_by: caripark creation_date: 2010-05-27T02:23:54Z [Term] id: PT:0010409 name: milk viscocity namespace: Product.ontology def: "any measurable or observable characteristic related to the resistance of milk to being deformed by either shear stress or extensional stress" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010298 ! milk texture trait created_by: caripark creation_date: 2010-05-27T02:44:23Z [Term] id: PT:0010410 name: milk organoleptic trait namespace: Product.ontology def: "any measurable or observable characteristic related to qualities of milk that involve perception by the senses" [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010448 ! milk trait created_by: caripark creation_date: 2010-05-27T04:15:35Z [Term] id: PT:0010411 name: brown flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk aromatics that are brown and create a rounded, full-bodied impression" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010412 name: butyric acid flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk aromatic that is sour, cheesy, and slightly buttery, reminiscent of baby vomit" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010413 name: cardboard flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk aromatics associated with cardboard or paper packaging" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010414 name: cooked flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the combination of brown flavor notes and aromatics associated with heated milk" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010415 name: overall dairy flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the general term for the aromatics associated with products made from cow's milk" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010416 name: dairy fat flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk aromatics associated with dairy fat" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010417 name: dairy sweet flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk aromatics associated with fresh dairy products" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010418 name: feed flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the slightly nutty, grainy milk aromatics associated with silage, dry alfalfa, and/or various grains" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010419 name: fermented flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the combination of milk sour aromatics associated with somewhat fermented dairy/cheesy notes that may include sauerkraut or green vegetation such as soured hay or decomposed grass" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010420 name: flat flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the milk aromatic characterized by lack of flavor/richness; watery" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-27T04:32:32Z [Term] id: PT:0010421 name: floral flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the sweet, light, slightly perfuming milk aromatics associated with flowers" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010422 name: grainy flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the brown aromatics that are musty, dusty, or malty; may include sweet, sour, and slightly fermented" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010423 name: green flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk aromatics associated with green vegetation that may include green, bitter notes" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010424 name: lack of freshness flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk flavor in which the overall rounded dairy notes, commonly associated with fresh milk, are altered; a combination of changes in amount or interaction of such attributes as sweet, bitter, sour, dairy fat, butyric acid, and/or brown flavors" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010425 name: light-oxidized flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk flavor caused by light-catalyzed oxidation; characterized by aromatics that may be described as burnt feathers, slightly sour burnt protein, tallow, and/or medicinal; may include increased astringency or metallic mouth feel" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010426 name: malt flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the milk aromatic described as brown sweet, musty, and somewhat grainy" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010427 name: medicinal flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for milk aromatics characteristic of antiseptic-like products" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010428 name: metallic flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the chemical-feeling factor on the tongue described as flat; associated with iron, copper, and/or silver spoons" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:16:45Z [Term] id: PT:0010429 name: dusty flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the dry, dirt-like aromatic associated with dry brown soil" [VTO:INRA "INRA curator"] subset: slim_cattle synonym: "musty/dusty flavor intensity in milk" EXACT [] is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010430 name: earthy flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the humus-like aromatics that may or may not include damp soil, decaying vegetation, or cellar-like characteristics" [VTO:INRA "INRA curator"] subset: slim_cattle synonym: "musty/earthy flavor intensity in milk" EXACT [] is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010431 name: oily flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the light aromatics associated with vegetable oil" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010432 name: plastic flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for an aromatic associated with plastic polyethylene containers or food stored in plastic" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010433 name: sweet flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the basic taste sensation of which sucrose in water is typical" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010434 name: vanilla flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the brown, sweet aromatics and character commonly associated with vanilla" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010435 name: sour aromatics flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the slightly pungent aromatic similar to those found in slightly fermented products, such as sour cream, buttermilk, and yogurt" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010436 name: sour flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the fundamental taste factor of which citric acid in water is typical" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010437 name: nutty flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for a non-specific, slightly sweet, brown, nut-like impression" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010438 name: bitter flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the fundamental taste factor of which caffeine in water is typical" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010439 name: astringent flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the dry and puckering mouth feel associated with an alum solution in the mouth" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:42:05Z [Term] id: PT:0010440 name: rancid flavor intensity in milk namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity score for the milk flavor linked to fat degradation in a fat-rich product" [VTO:INRA "INRA curator"] subset: slim_cattle is_a: PT:0010296 ! milk flavor intensity created_by: caripark creation_date: 2010-05-28T12:57:43Z [Term] id: PT:0010441 name: colostrum immunoglobulin A content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of the principal immunoglobulin in exocrine secretions" [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010257 ! colostrum immunoglobulin content created_by: caripark creation_date: 2010-07-22T03:19:50Z [Term] id: PT:0010442 name: colostrum immunoglobulin G content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of the major antibody for antitoxins, viruses, and bacteria; also activates complement" [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010257 ! colostrum immunoglobulin content created_by: caripark creation_date: 2010-07-22T03:19:50Z [Term] id: PT:0010443 name: colostrum immunoglobulin M content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in colostrum of an immunoglobulin formed during the early period of an immune response; also stimulates complement activity" [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0010257 ! colostrum immunoglobulin content created_by: caripark creation_date: 2010-07-22T03:19:50Z [Term] id: PT:0010444 name: meat organoleptic trait namespace: Product.ontology def: "any measurable or observable characteristic related to qualities of meat (muscle and associated fat and connective tissue, post-exsanguination) that involve perception by the senses" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0010447 ! meat trait created_by: caripark creation_date: 2010-08-10T12:43:21Z [Term] id: PT:0010445 name: meat structure trait namespace: Product.ontology def: "any measurable or observable characteristic related to the physical makeup or arrangement of meat (muscle and associated fat and connective tissue, post-exsanguination)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: PT:0010447 ! meat trait created_by: caripark creation_date: 2010-08-10T12:43:21Z [Term] id: PT:0010446 name: egg trait namespace: Product.ontology def: "any measurable or observable characteristic related to the ovum in combination with its nutrient stores and protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001852 is_a: PT:0000001 ! livestock product trait created_by: caripark creation_date: 2010-08-10T01:15:25Z [Term] id: PT:0010447 name: meat trait namespace: Product.ontology def: "any measurable or observable characteristic related to muscle and associated fat and connective tissue, post-exsanguination" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000001 ! livestock product trait created_by: caripark creation_date: 2010-08-10T01:17:58Z [Term] id: PT:0010448 name: milk trait namespace: Product.ontology def: "any measurable or observable characteristic related to this secretion of the mammary glands for the nourishment of young" [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep is_a: PT:0000001 ! livestock product trait created_by: caripark creation_date: 2010-08-10T01:19:32Z [Term] id: PT:0010449 name: retail product yield namespace: Product.ontology def: "any measurable or observable characteristic related to the total weight of trimmed retail cuts obtained from a carcass" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle is_a: PT:0000049 ! dressed carcass composition trait created_by: caripark creation_date: 2010-08-11T02:46:50Z [Term] id: PT:0010450 name: dressed carcass trait namespace: Product.ontology def: "any measurable or observable characteristic related to the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] comment: Parts removed during processing vary by species:\nCattle: head, hide, digestive tract, internal organs, legs (from knee/hock down)\nPig: head, hair, toenails, digestive tract, internal organs\nChicken: head, neck, feathers, digestive tract, internal organs, feet\nSheep: head, hide, digestive tract, internal organs, hooves (from epiphyseal plate of metacarpal or break/spool joint down) subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0000001 ! livestock product trait created_by: caripark creation_date: 2010-08-11T03:06:20Z [Term] id: PT:0010451 name: milk volume trait namespace: Product.ontology def: "any measurable or observable characteristic related to the amount of milk produced by the mammary gland" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] subset: slim_cattle is_obsolete: true created_by: mgi creation_date: 2010-01-21T04:32:49Z [Term] id: PT:0010452 name: meat lipid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: ATOL:0001663 is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010453 name: meat protein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of macromolecules consisting of long chains of amino acids in peptide linkage" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig xref: ATOL:0001547 is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010454 name: meat androstenone content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of the testicular steroid androstenone detected in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010455 name: meat free fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of organic, monobasic acids derived from hydrocarbons and unbound to other molecules; they are saturated and unsaturated" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010456 name: meat indole content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of this tryptophan degradation product detected in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010457 name: meat lactate content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in meat of the compound produced from pyruvate by lactate dehydrogenase" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010458 name: meat nitrogen content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of this element present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010459 name: meat skatole content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of this tryptophan degradation product detected in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2010-08-19T03:05:40Z [Term] id: PT:0010460 name: meat cholesterol content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of cholesterol present in the lipid extracted from meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0010452 ! meat lipid content created_by: caripark creation_date: 2010-08-19T03:21:27Z [Term] id: PT:0010461 name: meat saturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in meat; the carbon chain contains only single carbon-carbon bonds" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig is_a: PT:0010455 ! meat free fatty acid content created_by: caripark creation_date: 2010-08-20T08:41:48Z [Term] id: PT:0010462 name: meat unsaturated fatty acid content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of organic, monobasic acids derived from hydrocarbons present in meat; the carbon chain has one or more double or triple carbon-carbon bonds" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig is_a: PT:0010455 ! meat free fatty acid content created_by: caripark creation_date: 2010-08-20T08:41:48Z [Term] id: PT:0010463 name: meat fatty acid C14:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C14H28O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat fatty acid C14:0 concentration" RELATED [] synonym: "meat fatty acid C14:0 percentage" RELATED [] synonym: "meat myristic acid content" EXACT [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:00:02Z [Term] id: PT:0010464 name: meat fatty acid C16:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C16H32O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat fatty acid C16:0 concentration" RELATED [] synonym: "meat fatty acid C16:0 percentage" RELATED [] synonym: "meat palmitic acid content" EXACT [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:00:02Z [Term] id: PT:0010465 name: meat fatty acid C17:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C17H34O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat fatty acid C17:0 concentration" RELATED [] synonym: "meat fatty acid C17:0 percentage" RELATED [] synonym: "meat heptadecanoic acid content" EXACT [] synonym: "meat margaric acid content" EXACT [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:00:02Z [Term] id: PT:0010466 name: meat fatty acid C18:0 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a saturated fatty acid (C18H36O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat fatty acid C18:0 concentration" RELATED [] synonym: "meat fatty acid C18:0 percentage" RELATED [] synonym: "meat stearic acid content" EXACT [] is_a: PT:0010461 ! meat saturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:00:02Z [Term] id: PT:0010467 name: meat fatty acid C18:3(n-3) content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an omega-3, polyunsaturated fatty acid (C18H30O2), with three carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat fatty acid C18:3 n-3 concentration" RELATED [] synonym: "meat fatty acid C18:3 n-3 content" EXACT [] synonym: "meat fatty acid C18:3 n-3 percentage" RELATED [] synonym: "meat linolenic acid content" EXACT [] is_a: PT:0000036 ! meat omega-3 polyunsaturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:16:29Z [Term] id: PT:0010468 name: meat fatty acid C20:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an unsaturated fatty acid (C20H36O2), with two carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat fatty acid C20:2 concentration" RELATED [] synonym: "muscle eicosadienoic acid content" EXACT [] synonym: "muscle fatty acid C20:2 percentage" RELATED [] is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:16:29Z [Term] id: PT:0010469 name: meat fatty acid C20:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a monounsaturated fatty acid (C20H38O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat eicosenoic acid content" EXACT [] synonym: "meat fatty acid C20:1 concentration" RELATED [] synonym: "meat fatty acid C20:1 percentage" RELATED [] synonym: "meat gadoleic acid content" NARROW [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:16:29Z [Term] id: PT:0010470 name: meat fatty acid cis-9,cis-12-C18:2 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an omega-6 unsaturated fatty acid (C18H32O2), with two carbon-carbon double bonds, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat fatty acid cis-9,cis-12-C18:2 concentration" RELATED [] synonym: "meat fatty acid cis-9,cis-12-C18:2 percentage" RELATED [] synonym: "meat linoleic acid content" EXACT [] is_a: PT:0000020 ! meat polyunsaturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:16:29Z [Term] id: PT:0010471 name: meat fatty acid cis-9-C16:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of an omega-7, monounsaturated fatty acid (C16H30O2) present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat fatty acid cis-9-C16:1 concentration" RELATED [] synonym: "meat fatty acid cis-9-C18:1 percentage" RELATED [] synonym: "meat palmitoleic acid content" EXACT [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:16:29Z [Term] id: PT:0010472 name: meat fatty acid cis-9-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a monounsaturated, omega-9 fatty acid (C18H34O2), present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat fatty acid cis-9-C18:1 percentage" RELATED [] synonym: "meat fatty cid cis-9-C18:1 concentration" RELATED [] synonym: "meat oleic acid content" EXACT [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:16:29Z [Term] id: PT:0010473 name: meat fatty acid trans-11-C18:1 content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of a monounsaturated fatty acid (C18H34O2), with a trans double bond at C-11 position, present in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "meat 7-octadecenoic acid content" EXACT [] synonym: "meat fatty acid trans-11-C18:1 concentration" RELATED [] synonym: "meat fatty acid trans-11-C18:1 percentage" RELATED [] synonym: "meat trans-vaccenic acid content" EXACT [] synonym: "meat vaccenic acid content" EXACT [] is_a: PT:0000012 ! meat monounsaturated fatty acid content created_by: caripark creation_date: 2010-08-20T09:16:29Z [Term] id: PT:1000015 name: egg morphology trait namespace: Product.ontology def: "any measurable or observable characteristic related to the shape, structure, color or pattern of an ovum in combination with its nutrient stores and protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0010446 ! egg trait created_by: caripark creation_date: 2008-11-10T10:20:24Z [Term] id: PT:1000072 name: milk somatic cell count namespace: Product.ontology def: "any measurable or observable characteristic related to the number of somatic cells (leukocytes and epithelial cells) present in milk; a high count is an indicator of mastitis" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig synonym: "somatic cell score" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2008-11-10T01:29:25Z [Term] id: PT:1000104 name: meat color namespace: Product.ontology def: "any measurable or observable characteristic related to the color of meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: ATOL:0001017 is_a: PT:0010444 ! meat organoleptic trait created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: PT:1000106 name: meat odor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the meat scoring scale ranging from no odor to intense odor" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig xref: ATOL:0001046 is_a: PT:0010444 ! meat organoleptic trait created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: PT:1000109 name: meat texture trait namespace: Product.ontology def: "any measurable or observable characteristic related to the arrangement of the components that form the physical structure of meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: ATOL:0001054 is_a: PT:0010444 ! meat organoleptic trait is_a: PT:0010445 ! meat structure trait created_by: caripark creation_date: 2008-11-10T01:40:23Z [Term] id: PT:1000114 name: dressed carcass weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the body of an animal following slaughter and removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] comment: Parts removed during processing vary by species:\nCattle: head, hide, digestive tract, internal organs, legs (from knee/hock down)\nPig: head, hair, toenails, digestive tract, internal organs\nChicken: head, neck, feathers, digestive tract, internal organs, feet\nSheep: head, hide, digestive tract, internal organs, hooves (from epiphyseal plate of metacarpal or break/spool joint down) subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: ATOL:0001057 is_a: PT:0000048 ! dressed carcass size trait created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: PT:1000155 name: milk yield trait namespace: Product.ontology def: "any measurable or observable characteristic related to the amount of milk obtained over a given period of time from a lactating mammal" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle synonym: "machine milk" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-10T02:40:37Z [Term] id: PT:1000161 name: milk fat content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of fat in milk" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk fat concentration" RELATED [] synonym: "milk fat percentage" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2008-11-10T02:43:21Z [Term] id: PT:1000165 name: milk protein content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount in milk of macromolecules consisting of long sequences of amino acids in peptide linkage" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "milk protein concentration" RELATED [] synonym: "milk protein percentage" RELATED [] is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2008-11-10T02:45:00Z [Term] id: PT:1000225 name: drumstick weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the lower hindlimb of a bird, consisting of the tibia and the surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000074 ! drumstick size is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: PT:1000234 name: thigh muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the muscle tissue surrounding the femur of a bird" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000084 ! thigh composition trait is_a: PT:0000088 ! leg muscle weight created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: PT:1000235 name: thigh weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the part of a bird consisting of the femur and surrounding muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000082 ! thigh trait is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: PT:1000237 name: wing weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the forelimb of a bird, consisting of the humerus, radius, ulna, and metacarpus, and all associated muscle and skin" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000103 ! wing trait created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: PT:1000239 name: drumstick muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the muscle tissue surrounding the tibia of a bird" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000075 ! drumstick composition trait is_a: PT:0000088 ! leg muscle weight created_by: caripark creation_date: 2008-11-10T03:56:45Z [Term] id: PT:1000253 name: egg albumen height namespace: Product.ontology def: "any measurable or observable characteristic related to the height of the inner thick albumen (egg white) when an egg is broken onto a flat surface" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:1000695 ! egg albumen morphology trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000254 name: egg albumen weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the nutritive and protective gelatinous substance (egg white) surrounding the yolk of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001882 is_a: PT:1000577 ! egg weight is_a: PT:1000695 ! egg albumen morphology trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000255 name: egg shell color namespace: Product.ontology def: "any measurable or observable characteristic related to the visually perceived hue of the outermost protective covering of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001885 is_a: PT:1000696 ! egg shell morphology trait is_a: VT:0010001 ! egg color trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000257 name: egg shape namespace: Product.ontology def: "any measurable or observable characteristic related to the external form of the ovum in combination with its nutrient stores and protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:1000015 ! egg morphology trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000258 name: egg shell strength namespace: Product.ontology def: "any measurable or observable characteristic related to a measure of the force required to fracture the hard outermost covering of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0002119 is_a: PT:0010099 ! egg physiology trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000259 name: egg shell thickness namespace: Product.ontology def: "any measurable or observable characteristic related to the thickness of the outermost protective covering of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0002121 is_a: PT:1000696 ! egg shell morphology trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000260 name: egg shell weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the rinsed and dried outermost protective covering of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001881 is_a: PT:1000577 ! egg weight is_a: PT:1000696 ! egg shell morphology trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000263 name: long length of egg trait namespace: Product.ontology def: "any measurable or observable characteristic related to the length of egg from end to end" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_obsolete: true created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000264 name: egg width namespace: Product.ontology def: "any measurable or observable characteristic related to the diameter of an ovum in combination with its protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001877 is_a: PT:1000257 ! egg shape is_a: PT:1000772 ! egg size created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000266 name: egg yolk weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the nutrient store of the egg that is surround by a vitelline membrane" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001883 is_a: PT:1000577 ! egg weight is_a: PT:1000697 ! egg yolk morphology trait created_by: caripark creation_date: 2008-11-11T09:55:05Z [Term] id: PT:1000269 name: white meat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the breast (pectoralis major and pectoralis minor) and wing meat; back muscle weight may or may not be included" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:0000049 ! dressed carcass composition trait created_by: caripark creation_date: 2008-11-11T10:15:31Z [Term] id: PT:1000270 name: egg shell redness namespace: Product.ontology def: "any measurable or observable characteristic related to the chromatic component of egg shell color from green to red" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001886 is_a: PT:1000255 ! egg shell color created_by: caripark creation_date: 2008-11-11T10:15:31Z [Term] id: PT:1000271 name: egg shell reflectivity namespace: Product.ontology def: "any measurable or observable characteristic related to the luminance or lightness component of egg shell color" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn synonym: "egg shell lightness" RELATED [] xref: ATOL:0001887 is_a: PT:1000255 ! egg shell color created_by: caripark creation_date: 2008-11-11T10:15:31Z [Term] id: PT:1000272 name: egg shell yellowness namespace: Product.ontology def: "any measurable or observable characteristic related to the chromatic component of egg shell color from blue to yellow" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001888 is_a: PT:1000255 ! egg shell color created_by: caripark creation_date: 2008-11-11T10:15:31Z [Term] id: PT:1000408 name: belly weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat obtained from the underside of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000068 ! belly size trait created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: PT:1000411 name: dressed carcass length namespace: Product.ontology def: "any measurable or observable characteristic related to the distance from end to end of the carcass, following removal of the head; often measured between the first or second cervical vertebra or the first rib and the pelvis" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig xref: ATOL:0001543 is_a: PT:0000048 ! dressed carcass size trait created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: PT:1000422 name: shoulder weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the upper portion of the front leg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000071 ! shoulder size created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: PT:1000426 name: trimmed wholesale product weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the major wholesale cuts, trimmed of fat" [VTO:CP "Cari Park, Iowa State University Curator"] comment: In the pig, there are four major wholesale cuts: ham, loin, Boston butt, and picnic shoulder. subset: slim_pig is_a: PT:0000049 ! dressed carcass composition trait created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: PT:1000529 name: meat androstenone flavor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of a perceived urine-like flavor in the meat or fat of some uncastrated male pigs" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000539 ! meat flavor intensity created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: PT:1000533 name: meat skatole flavor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of a perceived manure-like flavor in the meat or fat of some uncastrated male pigs" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000539 ! meat flavor intensity created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: PT:1000539 name: meat flavor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the meat scoring scale ranging from no flavor to intense flavor" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep synonym: "flavor score" EXACT [] synonym: "taste intensity" EXACT [] xref: ATOL:0001002 is_a: PT:0010444 ! meat organoleptic trait created_by: caripark creation_date: 2008-11-11T03:29:36Z [Term] id: PT:1000546 name: meat color redness namespace: Product.ontology def: "any measurable or observable characteristic related to the objective reflective measure of meat color along the red to green color scale; typically measured by a colorimeter" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat color a" EXACT [] is_a: PT:1000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: PT:1000547 name: meat color yellowness namespace: Product.ontology def: "any measurable or observable characteristic related to the objective reflective measure of meat color along the yellow to blue color scale; typically measured by a colorimeter" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "meat color b" EXACT [] is_a: PT:1000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: PT:1000548 name: meat color reflectivity namespace: Product.ontology def: "any measurable or observable characteristic related to the objective meat color variable for lightness/darkness, based on the amount of light reflected off the surface of the meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "light reflection" EXACT [] synonym: "meat color L" EXACT [] synonym: "meat color lightness" EXACT [] synonym: "reflectance value" EXACT [] is_a: PT:1000104 ! meat color created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: PT:1000550 name: meat hematin content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of heme in which iron is in the ferric state in meat; provides pigmentation" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "haematin pigmentation" EXACT [] synonym: "hematin pigmentation" EXACT [] synonym: "meat hematin concentration" RELATED [] xref: ATOL:0000023 is_a: PT:1000104 ! meat color is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2008-11-11T03:33:19Z [Term] id: PT:1000560 name: ham external fat weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the fat trimmed from the surface of the ham" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig xref: VTO:CP "Cari Park, Iowa State University Curator" is_a: PT:0000039 ! ham fat weight created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: PT:1000561 name: ham muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the ham with bone, skin, and fat removed" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "ham meat weight" EXACT [] is_a: PT:0000064 ! ham composition trait is_a: PT:0000088 ! leg muscle weight created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: PT:1000563 name: ham weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the hind leg of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000042 ! ham size trait is_a: PT:0000097 ! leg composition trait created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: PT:1000577 name: egg weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of an ovum in combination with its nutrient stores and protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:1000772 ! egg size created_by: caripark creation_date: 2008-12-17T08:24:20Z [Term] id: PT:1000587 name: pork odor intensity (lean) namespace: Product.ontology def: "any measurable or observable characteristic related to the subjective score describing the perceived intensity of the smell of cooked pork that has been trimmed of fat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "smell intensity (meat)" EXACT [] is_a: PT:1000592 ! pork odor intensity created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: PT:1000588 name: pork odor intensity (fat) namespace: Product.ontology def: "any measurable or observable characteristic related to the subjective score describing the perceived intensity of the smell of cooked fat removed from a cut of pork" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "smell intensity (fat)" EXACT [] is_a: PT:1000592 ! pork odor intensity created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: PT:1000592 name: pork odor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the subjective score describing the perceived intensity of the smell of cooked pork" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000106 ! meat odor intensity created_by: caripark creation_date: 2008-11-11T04:05:30Z [Term] id: PT:1000602 name: meat chewiness trait namespace: Product.ontology def: "any measurable or observable characteristic related to the evaluation of the total number of chews required to sufficiently break up meat before swallowing" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "chew score" EXACT [] synonym: "chewiness score" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: PT:1000603 name: meat cooking loss trait namespace: Product.ontology def: "any measurable or observable characteristic related to the decrease in the weight of a cut of meat during cooking, mostly due to moisture loss" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: PT:1000605 name: meat drip loss trait namespace: Product.ontology def: "any measurable or observable characteristic related to the fluid lost from fresh, uncooked meat due to passive exudation" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "purge" EXACT [] synonym: "purge loss" EXACT [] is_obsolete: true created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: PT:1000608 name: meat firmness namespace: Product.ontology def: "any measurable or observable characteristic related to the subjective evaluation of loin firmness following chilling of a carcass" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig xref: ATOL:0001667 is_a: PT:1000109 ! meat texture trait created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: PT:1000609 name: meat juiciness namespace: Product.ontology def: "any measurable or observable characteristic related to the evaluation of the amount of liquid released by a piece of meat during chewing" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig synonym: "juiciness score" EXACT [] is_a: PT:0010444 ! meat organoleptic trait created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: PT:1000618 name: meat tenderness namespace: Product.ontology def: "any measurable or observable characteristic related to the ease with which meat is broken down during mastication or mechanical processing" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig subset: slim_sheep synonym: "tenderness score" EXACT [] xref: ATOL:0001670 is_a: PT:1000109 ! meat texture trait created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: PT:1000619 name: meat water holding capacity namespace: Product.ontology def: "any measurable or observable characteristic related to the ability of meat to retain water during cutting, heating, grinding, pressing, and storage" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig xref: ATOL:0001671 is_a: PT:0010445 ! meat structure trait is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: PT:1000685 name: meat pH namespace: Product.ontology def: "any measurable or observable characteristic related to the relative acidity or alkalinity of meat, as measured by the concentration of hydrogen ion" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep xref: ATOL:0001684 is_a: PT:0000105 ! meat physiochemical trait created_by: caripark creation_date: 2009-04-01T03:49:05Z [Term] id: PT:1000695 name: egg albumen morphology trait namespace: Product.ontology def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the nutritive and protective gelatinous substance surrounding the yolk of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn synonym: "egg white morphology" RELATED [] is_a: PT:1000015 ! egg morphology trait created_by: caripark creation_date: 2009-04-03T11:33:39Z [Term] id: PT:1000696 name: egg shell morphology trait namespace: Product.ontology def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the outermost protective covering of an egg" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:1000015 ! egg morphology trait created_by: caripark creation_date: 2009-04-03T11:33:39Z [Term] id: PT:1000697 name: egg yolk morphology trait namespace: Product.ontology def: "any measurable or observable characteristic related to the shape, structure, color or pattern of the nutrient store of the egg that is surround by a vitelline membrane" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:1000015 ! egg morphology trait created_by: caripark creation_date: 2009-04-03T11:33:39Z [Term] id: PT:1000699 name: egg yolk diameter namespace: Product.ontology def: "any measurable or observable characteristic related to the distance across the yolk when an egg is broken onto a flat surface" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001879 is_a: PT:1000697 ! egg yolk morphology trait created_by: caripark creation_date: 2009-04-03T11:37:29Z [Term] id: PT:1000700 name: egg yolk height namespace: Product.ontology def: "any measurable or observable characteristic related to the vertical dimension at the highest point of the yolk when an egg is broken onto a flat surface" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:1000697 ! egg yolk morphology trait created_by: caripark creation_date: 2009-04-03T11:37:29Z [Term] id: PT:1000709 name: shoulder muscle weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the upper portion of the front leg, with fat and bone removed" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig subset: slim_sheep is_a: PT:0000072 ! shoulder composition trait created_by: caripark creation_date: 2009-04-28T01:47:10Z [Term] id: PT:1000714 name: dressed carcass subdivision size namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions of an anatomical structure which is a subpart of the body of an organism following removal of the head, digestive tract, internal organs, and possibly the hide and/or feet" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_obsolete: true created_by: caripark creation_date: 2009-05-04T03:19:20Z [Term] id: PT:1000719 name: ham bone weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the bone in the ham" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000064 ! ham composition trait created_by: caripark creation_date: 2009-05-06T09:06:13Z [Term] id: PT:1000722 name: milk energy yield namespace: Product.ontology def: "any measurable or observable characteristic related to the total energy content of milk; may be based on a combination of fat, protein, lactose, ash, and water content" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig is_a: PT:0004047 ! milk composition trait created_by: caripark creation_date: 2009-05-06T11:33:11Z [Term] id: PT:1000729 name: carcass temperature namespace: Product.ontology def: "any measurable or observable characteristic related to the temperature of the dead body; may be measured either before or after processing to remove specific parts" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_obsolete: true created_by: caripark creation_date: 2009-05-07T09:43:03Z [Term] id: PT:1000742 name: sarcomere length namespace: Product.ontology def: "any measurable or observable characteristic related to the length of the segment of a myofibril between two Z lines" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig xref: ATOL:0001690 is_a: PT:0010445 ! meat structure trait created_by: caripark creation_date: 2009-05-07T02:45:53Z [Term] id: PT:1000744 name: neck weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat from the dorsal side of the pig, anterior to the third rib" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2009-05-07T03:37:37Z [Term] id: PT:1000745 name: jowl weight namespace: Product.ontology def: "any measurable or observable characteristic related to the relative heaviness of the cut of meat obtained from the cheek of the pig" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:0000056 ! dressed carcass subdivision trait created_by: caripark creation_date: 2009-05-07T03:46:46Z [Term] id: PT:1000759 name: pork flavor intensity (fat) namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of the distinctive flavor of pork in fat trimmed from a cut of cooked meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000766 ! pork flavor intensity created_by: caripark creation_date: 2009-05-20T10:48:06Z [Term] id: PT:1000760 name: pork flavor intensity (lean) namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of the distinctive flavor of pork in cooked meat that has been trimmed of fat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000766 ! pork flavor intensity created_by: caripark creation_date: 2009-05-20T10:48:06Z [Term] id: PT:1000765 name: beef flavor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of the distinctive flavor of beef in cooked meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle is_a: PT:1000539 ! meat flavor intensity created_by: caripark creation_date: 2009-06-15T10:04:26Z [Term] id: PT:1000766 name: pork flavor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of the distinctive flavor of pork in cooked meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000539 ! meat flavor intensity created_by: caripark creation_date: 2009-06-15T10:05:22Z [Term] id: PT:1000767 name: beef odor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the subjective score describing the perceived intensity of the smell of cooked beef" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle is_a: PT:1000106 ! meat odor intensity created_by: caripark creation_date: 2009-06-15T10:11:46Z [Term] id: PT:1000768 name: meat androstenone odor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of a perceived urine-like odor in the meat or fat of some uncastrated male pigs" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000106 ! meat odor intensity created_by: caripark creation_date: 2009-06-15T10:13:11Z [Term] id: PT:1000769 name: meat skatole odor intensity namespace: Product.ontology def: "any measurable or observable characteristic related to the intensity of a perceived manure-like odor in the meat or fat of some uncastrated male pigs" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_pig is_a: PT:1000106 ! meat odor intensity created_by: caripark creation_date: 2009-06-15T10:14:09Z [Term] id: PT:1000770 name: meat composition trait namespace: Product.ontology def: "any measurable or observable characteristic related to the amounts of proteins, minerals, nutrients, gases, or other substances in meat (muscle and associated fat and connective tissue, post-exsanguination)" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_chkn subset: slim_pig subset: slim_sheep is_a: PT:0010447 ! meat trait created_by: caripark creation_date: 2009-06-15T10:53:50Z [Term] id: PT:1000771 name: meat mineral content namespace: Product.ontology def: "any measurable or observable characteristic related to the proportion or amount of any or all inorganic substance(s) in meat" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_cattle subset: slim_pig xref: ATOL:0001695 is_a: PT:1000770 ! meat composition trait created_by: caripark creation_date: 2009-06-15T10:55:23Z [Term] id: PT:1000772 name: egg size namespace: Product.ontology def: "any measurable or observable characteristic related to the physical dimensions or proportions of the ovum in combination with its nutrient stores and protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn is_a: PT:1000015 ! egg morphology trait created_by: caripark creation_date: 2009-06-25T11:24:30Z [Term] id: PT:1000773 name: egg length namespace: Product.ontology def: "any measurable or observable characteristic related to the length from end to end of the ovum in combination with its nutrient stores and protective outer coverings" [VTO:CP "Cari Park, Iowa State University Curator"] subset: slim_chkn xref: ATOL:0001876 is_a: PT:1000257 ! egg shape is_a: PT:1000772 ! egg size created_by: caripark creation_date: 2009-06-25T11:25:10Z [Term] id: VT:0000001 name: vertebrate trait namespace: Trait.ontology def: "Any measurable or observable characteristic of a vertebrate organism." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: ID:0000001 ! linked ontologies [Term] id: VT:0000002 name: head size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0011496] is_a: VT:0000432 ! head morphology trait [Term] id: VT:0000003 name: adipose morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fat-storing cells/tissue." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "fat morphology trait" EXACT [] is_a: VT:0001248 ! connective tissue morphology trait [Term] id: VT:0000004 name: forelimb conformation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the assessment of the overall structure and proportions of the anterior or superior jointed appendages of an animal, used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "conformation of the forelimbs" EXACT [] is_a: VT:1000738 ! limb conformation trait created_by: mshimoyama creation_date: 2011-06-24T09:14:34Z [Term] id: VT:0000005 name: right atrium size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the right upper chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "right atrial size trait" RELATED [] is_a: VT:0000019 ! right atrium morphology trait is_a: VT:0003140 ! heart atrium size trait [Term] id: VT:0000006 name: esophagus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the part of the digestive canal through which food passes from the pharynx to the stomach." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "oesophagus size trait" EXACT [] is_a: VT:0000467 ! esophagus morphology trait created_by: mshimoyama creation_date: 2011-06-13T01:45:38Z [Term] id: VT:0000007 name: mammary gland growth trait namespace: Trait.ontology is_a: VT:0000628 ! mammary gland development trait created_by: mshimoyama creation_date: 2011-06-14T02:37:51Z [Term] id: VT:0000008 name: atrium appendage configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the small trabeculated chamber projecting from the atrium proper." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "atrial appendage configuration" RELATED [] is_a: VT:0000024 ! atrium appendage morphology trait [Term] id: VT:0000009 name: red blood cell quantity namespace: Trait.ontology def: "OBSOLETED: Replace with VT:00001586, erythrocyte quantity." [VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true created_by: mshimoyama creation_date: 2011-06-14T03:01:56Z [Term] id: VT:0000010 name: abdominal fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue in the cavity bounded by the abdominal walls, the diaphragm, and the pelvis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000010] synonym: "abdominal fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait [Term] id: VT:0000011 name: cloaca septation extent namespace: Trait.ontology def: "The degree to which the separation of the single opening of the digestive, urinary, and reproductive tracts (cloaca) into multiple isolated openings during development has reached its end point." [PMID:15223334] synonym: "cloaca septation completeness" RELATED [] is_a: VT:0003125 ! cloaca septation trait created_by: mshimoyama creation_date: 2011-06-16T08:52:54Z [Term] id: VT:0000012 name: left atrium size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the left upper chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "left atrial size trait" RELATED [] is_a: VT:0000020 ! left atrium morphology trait is_a: VT:0003140 ! heart atrium size trait [Term] id: VT:0000013 name: adipose distribution trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the placement of fat-storing cells/tissue on the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MP:0000013] synonym: "adipose tissue distribution" EXACT [] synonym: "fat distribution" EXACT [] is_a: VT:0000003 ! adipose morphology trait [Term] id: VT:0000014 name: tracheal-esophageal septation extent namespace: Trait.ontology def: "The degree to which the separation of the trachea and esophagus during development has reached its end point." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "tracheal-esophageal septation completeness" RELATED [] is_a: VT:0003117 ! tracheal-esophageal septation trait created_by: mshimoyama creation_date: 2011-06-16T08:59:13Z [Term] id: VT:0000016 name: hindlimb conformation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the assessment of the overall structure and proportions of the posterior or inferior jointed appendages of an animal, used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "conformation of the hindlimbs" EXACT [] is_a: VT:1000738 ! limb conformation trait created_by: mshimoyama creation_date: 2011-06-24T09:14:51Z [Term] id: VT:0000017 name: outer ear size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of any of the components of the auricles or external acoustic meatus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002177] synonym: "ear size trait" RELATED [] is_a: VT:0002177 ! outer ear morphology trait [Term] id: VT:0000018 name: ventricle membranous septum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the membranous portion of the wall between the lower chambers of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0007082 ! ventricle septum morphology trait [Term] id: VT:0000019 name: right atrium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the right upper chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "right atrial morphology trait" RELATED [] is_a: VT:0003105 ! heart atrium morphology trait [Term] id: VT:0000020 name: left atrium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the left upper chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "left atrial morphology trait" RELATED [] is_a: VT:0003105 ! heart atrium morphology trait [Term] id: VT:0000021 name: outer ear prominence namespace: Trait.ontology def: "The physical distance from the outer edge of the outer ear to the head." [MP:0000021] is_a: VT:0002177 ! outer ear morphology trait [Term] id: VT:0000022 name: outer ear shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of any of the components of the auricles or external acoustic meatus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000022] is_a: VT:0002177 ! outer ear morphology trait [Term] id: VT:0000023 name: ear orientation trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the location or placement of the outer ears in relation to each other or to the skull.\nreplace with VT:0010274" [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0000024 name: atrium appendage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the small trabeculated chamber projecting from the atrium proper." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "atrial appendage morphology trait" RELATED [] is_a: VT:0003105 ! heart atrium morphology trait [Term] id: VT:0000025 name: atrioventricular valve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the valves that gate the flow of blood from the atria into the ventricles." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000285 ! heart valve morphology trait [Term] id: VT:0000026 name: inner ear morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the labyrinth, including the semicircular canals, vestibule and cochlea." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000026] is_a: VT:0002102 ! ear morphology trait [Term] id: VT:0000027 name: head width namespace: Trait.ontology def: "The distance from side to side across the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0011496] is_a: VT:0000002 ! head size trait [Term] id: VT:0000028 name: pars superior vestibularis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the part of the vestibular ganglion that receives fibers from the maculae of the utricle and the sacculae and the ampullae of the anterior and lateral semicircular ducts." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000028] is_a: VT:0000026 ! inner ear morphology trait is_a: VT:0002856 ! vestibular ganglion morphology trait [Term] id: VT:0000029 name: malleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the largest of the three auditory ossicles, which resembles a club." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000029] is_a: VT:0005105 ! auditory ossicle morphology trait [Term] id: VT:0000030 name: tympanic ring morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bony ring at the ear canal to which the tympanic membrane is attached." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000030] is_a: VT:0000049 ! middle ear morphology trait [Term] id: VT:0000031 name: cochlea morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000031] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0000032 name: total urine protein amount namespace: Trait.ontology is_a: VT:0005160 ! urine protein amount created_by: mshimoyama creation_date: 2011-06-21T01:05:20Z [Term] id: VT:0000033 name: mitral valve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the valve between the left atrium and the left ventricle of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000025 ! atrioventricular valve morphology trait [Term] id: VT:0000034 name: vestibule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cavity between the semicircular canals and the cochlea of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000034] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0000035 name: membranous labyrinth morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the complex arrangement of communicating canaliculi and sacs suspended within the cavity of the bony labyrinth of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000035] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0000036 name: tricuspid valve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the valve between the right atrium and the right ventricle of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000025 ! atrioventricular valve morphology trait [Term] id: VT:0000037 name: lateral semicircular canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the lateral long bony tube of the labyrinth that is involved in the sense of balance." [MP:0000037] synonym: "horizontal semicircular canal morphology trait" EXACT [] is_a: VT:0002428 ! semicircular canal morphology trait [Term] id: VT:0000038 name: head length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0011496] is_a: VT:0000002 ! head size trait [Term] id: VT:0000039 name: otic capsule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cartilage or bony capsule surrounding the inner ear mechanism." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000039] synonym: "periotic capsule morphology trait" EXACT [] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0000040 name: aortic valve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the valve between the left ventricle and the ascending aorta." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002746 ! semilunar valve morphology trait [Term] id: VT:0000041 name: endolymphatic duct size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the small membranous canal, connecting with both saccule and utricle of the membranous labyrinth, passing through the aqueduct of vestibule, and terminating in the endolymphatic sac." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0006011] is_a: VT:0006011 ! endolymphatic duct morphology trait [Term] id: VT:0000042 name: organ of Corti morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the highly specialized epithelium in the floor of the ductus cochlearis; also referred to a spiral organ (organum spirale), or acoustic papilla." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000042] synonym: "spiral organ morphology trait" EXACT [] is_a: VT:0003169 ! scala media morphology trait [Term] id: VT:0000043 name: total urine molecular amount namespace: Trait.ontology def: "OBSOLETE." [XX:] is_obsolete: true created_by: mshimoyama creation_date: 2011-06-21T01:06:30Z [Term] id: VT:0000044 name: pulmonary valve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the valve between the right ventricle and the pulmonary trunk." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002746 ! semilunar valve morphology trait [Term] id: VT:0000045 name: hair cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the sensory epithelial cells of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000045] is_a: VT:0000026 ! inner ear morphology trait is_a: VT:0000972 ! mechanoreceptor morphology trait [Term] id: VT:0000046 name: sulcus ampullaris morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the transverse groove on the membranous ampulla of each semicircular duct, where the nerve enters the ampullary crest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000046] synonym: "ampullary groove morphology trait" EXACT [] synonym: "ampullary sulcus morphology trait" EXACT [] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0000047 name: head circumference namespace: Trait.ontology def: "The distance around the widest part of the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0011496] is_a: VT:0000002 ! head size trait [Term] id: VT:0000048 name: stria vascularis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the stratified, secretory epithelium which lines the upper part of the cochlear spiral ligament and maintains K+ homeostasis in the endolymph; stria vascularis normally consists of marginal, intermediate, and basal cells: basal and marginal cell tight junctions preclude paracellular diffusion into and out of the intrastrial space while basal and intermediate cells secrete into this space K+ derived from fibrocytes through gap junctions." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000048] synonym: "psalterial cord morphology trait" EXACT [] synonym: "stria vascularis ductus cochlearis morphology trait" EXACT [] synonym: "vascular stripe morphology trait" EXACT [] is_a: VT:0003169 ! scala media morphology trait [Term] id: VT:0000049 name: middle ear morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the components of the tympanic cavity or its ossicles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000049] is_a: VT:0002102 ! ear morphology trait [Term] id: VT:0000050 name: pancreas/salivary gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the pancreas or salivary glands." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:1000776 ! alimentary system trait created_by: dmunzenmaier creation_date: 2010-03-03T10:23:31Z [Term] id: VT:0000051 name: testes physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the male reproductive glands." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "testicular physiology trait" EXACT [] synonym: "testis physiology trait" EXACT [] xref: ATOL:0000025 is_a: VT:0003698 ! male reproductive system physiology trait is_a: VT:0005647 ! sex gland physiology trait [Term] id: VT:0000052 name: ear unfolding initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of opening and spreading out of the outer ear." [MP:0000052] synonym: "onset of ear unfolding" EXACT [] is_a: VT:0015029 ! outer ear development trait [Term] id: VT:0000053 name: total milk casein amount namespace: Trait.ontology is_a: VT:0010280 ! milk casein amount created_by: mshimoyama creation_date: 2011-06-21T01:08:09Z [Term] id: VT:0000054 name: ear emergence initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of the growth of the outer ear." [MP:0000054] synonym: "onset of ear elevation" EXACT [] synonym: "onset of ear emergence" EXACT [] synonym: "onset of ear extroversion" EXACT [] is_a: VT:0015029 ! outer ear development trait [Term] id: VT:0000055 name: total milk mineral amount namespace: Trait.ontology is_a: VT:0010288 ! milk mineral amount created_by: mshimoyama creation_date: 2011-06-22T12:27:36Z [Term] id: VT:0000056 name: urine trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the fluid and dissolved substances excreted by the kidneys." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0001491 is_a: VT:0000516 ! urinary system morphology trait created_by: mshimoyama creation_date: 2011-06-22T01:25:52Z [Term] id: VT:0000057 name: ossification trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of bone formation or conversion of membranous tissue or cartilage into bone." [MGI:GO "Definition from the Gene Ontology"] synonym: "bone formation" EXACT [] synonym: "osteogenesis" EXACT [] xref: GO:0001503 "ossification" is_a: VT:0010005 ! bone development trait [Term] id: VT:0000058 name: heart muscle compact layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the outer, dense layer of the myocardium." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "myocardial compact layer morphology trait" EXACT [] is_a: VT:0005329 ! heart muscle morphology trait [Term] id: VT:0000059 name: osteoclast development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of this multinucleated cell, which normally functions in the absorption and removal of osseous tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "osteoclast formation" EXACT [] synonym: "osteophage formation" EXACT [] is_a: VT:0010005 ! bone development trait [Term] id: VT:0000060 name: ossification initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of the formation of bone or conversion of membranous tissue or cartilage into bone." [MGI:GO "Definition from the Gene Ontology", PMID:9144284, RGD:MS] synonym: "onset of osteogenesis" EXACT [] is_a: VT:0000057 ! ossification trait [Term] id: VT:0000061 name: cardiomyocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the striated muscle cells comprising the myocardium; depending on the species, cells may be mono-, bi-, or multinucleated." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac myocyte morphology trait" EXACT [] synonym: "heart muscle cell morphology trait" EXACT [] synonym: "myocardial cell morphology trait" EXACT [] is_a: VT:0004087 ! muscle cell morphology trait is_a: VT:0005329 ! heart muscle morphology trait [Term] id: VT:0000062 name: heart muscle trabeculae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the supporting bundles of muscular fibers lining the walls of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac muscle trabeculae morphology trait" EXACT [] synonym: "myocardial trabeculae morphology trait" EXACT [] synonym: "trabeculae carneae morphology trait" EXACT [] is_a: VT:0005329 ! heart muscle morphology trait [Term] id: VT:0000063 name: ventricle papillary muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the group of myocardial bundles which terminate in the chordae tendineae that attach to the cusps of the atrioventricular valves; each ventricle has an anterior and a posterior papillary muscle; the right ventricle sometimes has a septal papillary muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "musculus papillaris morphology trait" EXACT [] synonym: "ventricular papillary muscle morphology trait" EXACT [] xref: MP:0004058 is_a: VT:0005294 ! heart ventricle morphology trait is_a: VT:0005329 ! heart muscle morphology trait [Term] id: VT:0000064 name: secondary bone resorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of osteoclasts to degrade the organic and inorganic phases of bone by absorption." [PMID:10709991, PMID:1997203] is_a: VT:0001541 ! osteoclast physiology trait [Term] id: VT:0000065 name: medullary cavity morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the marrow cavity in the shaft of a long bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10709991] synonym: "bone marrow cavity morphology trait" EXACT [] synonym: "marrow cavity morphology trait" EXACT [] synonym: "medullary canal morphology trait" EXACT [] is_a: VT:0004214 ! long bone diaphysis morphology trait [Term] id: VT:0000066 name: pancreas/salivary gland physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the pancreas or salivary glands." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:1000776 ! alimentary system trait created_by: dmunzenmaier creation_date: 2010-03-03T02:05:34Z [Term] id: VT:0000067 name: blood morphology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the fluid that circulates through the heart, arteries, veins, and capillaries, carrying oxygen and nutritive materials and removing waste products and carbon dioxide." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_obsolete: true created_by: mshimoyama creation_date: 2011-06-22T01:26:32Z [Term] id: VT:0000068 name: blood mineral amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of any inorganic element or compound that has importance in body functions." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "blood mineral content" RELATED [] is_a: VT:0000192 ! mineral amount is_a: VT:0015078 ! blood homeostasis trait created_by: mshimoyama creation_date: 2011-06-22T02:18:24Z [Term] id: VT:0000069 name: embryo trait namespace: Trait.ontology def: "Any measurable or observable characteristic or state of the developing organism before birth." [Dorland:Dorlands Illustrated Medical Dictionary] is_a: VT:0010454 ! organism trait created_by: mshimoyama creation_date: 2011-06-24T09:32:45Z [Term] id: VT:0000070 name: bone physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in a portion of osseous tissue forming a part of the skeleton; consists of a dense outer layer surrounded by the periosteum, and an inner spongy substance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010064 ! connective tissue physiology trait created_by: mshimoyama creation_date: 2011-06-24T10:56:09Z [Term] id: VT:0000071 name: axial skeleton cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the craniofacial, vertebral, rib, or sternal bones." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:10572046] synonym: "axial skeleton cell number" EXACT [] is_a: VT:0002114 ! axial skeleton morphology trait [Term] id: VT:0000072 name: bone elasticity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of bone to recover size and shape after deformation in any way." [PMID:7298519, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000070 ! bone physiology trait created_by: mshimoyama creation_date: 2011-06-24T10:57:35Z [Term] id: VT:0000073 name: lifetime offspring quantity namespace: Trait.ontology def: "The proportion or number of offspring born over the reproductive life of a female organism." [RGD:MS] synonym: "total number of offspring " EXACT [] is_a: VT:1000189 ! offspring quantity created_by: mshimoyama creation_date: 2011-06-24T12:27:14Z [Term] id: VT:0000074 name: neurocranium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bones of the skull enclosing the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000074] is_a: VT:0000438 ! skull morphology trait [Term] id: VT:0000075 name: blood-brain barrier morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the group of barriers and transport systems in the brain capillary endothelium that controls the entrance of substances into the brain extracellular space from the blood." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0000076 name: calvaria morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the upper dome-like portion of the skull." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cranial vault morphology trait" EXACT [] is_a: VT:0000074 ! neurocranium morphology trait [Term] id: VT:0000077 name: interparietal bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone of the cranium that lies above and anterior to the occipital bone in some mammals." [MP:0000077] is_a: VT:0000076 ! calvaria morphology trait [Term] id: VT:0000078 name: supraoccipital bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone on the dorsal side of the great foramen of the skull, usually forming a part of the occipital in the adult, but distinct in the young." [MP:0000078] is_a: VT:0005269 ! occipital bone morphology trait [Term] id: VT:0000079 name: basilar bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the basilar process of the occipital bone in the base of the cranium, frequently forming a direct part of the occipital in the adult, but usually distinct in the young." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000079] synonym: "basioccipital bone morphology trait" EXACT [] is_a: VT:0005269 ! occipital bone morphology trait [Term] id: VT:0000080 name: exoccipital bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone or region on the lateral sides of the great foramen of the skull, which often forms a part of the occipital in the adult, but is usually distinct in the young." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000080] is_a: VT:0005269 ! occipital bone morphology trait [Term] id: VT:0000081 name: cranial suture closure initiation namespace: Trait.ontology def: "The start of fusion of the bones of the skull." [PMID:7597092] is_a: VT:0003420 ! intramembranous ossification initiation trait [Term] id: VT:0000084 name: fontanelle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the membranous interval at the margins of cranial bones in neonates." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000084] synonym: "fontanel morphology trait" EXACT [] is_a: VT:0003935 ! craniofacial development trait is_a: VT:0010005 ! bone development trait [Term] id: VT:0000085 name: blood-cerebrospinal fluid barrier morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the group of barriers and transport systems in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0000087 name: capillary morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the minute blood vessels that connect arterioles and venules." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: MP:0003658 is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0000098 name: vomer bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the triangular flat bone of the nasal septum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000098] is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0000100 name: ethmoid bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone lying between the orbital plates of the frontal bone and anterior to the sphenoid bone; it enters into the formation of the anterior cranial fossa, the orbits, and the nasal cavity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005246 ! orbit morphology trait is_a: VT:0005273 ! cranial base morphology trait [Term] id: VT:0000102 name: nasal bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of either of two rectangular bone plates forming the bridge of the nose." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000102] is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0000104 name: sphenoid bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the most irregularly shaped bone of the base of the skull." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000104] is_a: VT:0005246 ! orbit morphology trait is_a: VT:0005273 ! cranial base morphology trait [Term] id: VT:0000106 name: basisphenoid morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the part of the base of the cranium between the basioccipital and the presphenoid, which usually ossifies separately in the embryo or in the young, and becomes a part of the sphenoid in the adult; in many animals it persists as a separate bone between the basioccipital bone and the presphenoid bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000106] synonym: "basisphenoid bone morphology trait" EXACT [] is_a: VT:0000104 ! sphenoid bone morphology trait [Term] id: VT:0000107 name: frontal bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone forming the forehead and roof of the eye orbit." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000107] is_a: VT:0000076 ! calvaria morphology trait is_a: VT:0005246 ! orbit morphology trait is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0000109 name: parietal bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the curved bone forming part of the vault of the cranium." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000109] is_a: VT:0000076 ! calvaria morphology trait [Term] id: VT:0000116 name: tooth development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the bone-like structures embedded in the jaw." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003935 ! craniofacial development trait [Term] id: VT:0000117 name: tooth primordium development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cells that give rise to the teeth." [MP:0000117] synonym: "tooth anlage development trait" EXACT [] is_a: VT:0000116 ! tooth development trait [Term] id: VT:0000119 name: tooth eruption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the passage of a tooth through the alveolar process and perforation of the gums." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0000120 name: bite alignment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the patterned arrangement of the upper and lower teeth with respect to each other or arrangement of the upper and lower jaws with respect to each other." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MP:0000120] is_a: VT:0000438 ! skull morphology trait is_a: VT:0100006 ! anatomical relation trait [Term] id: VT:0000121 name: cardiovascular system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the heart or blood vessels during their formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0100015 ! circulatory system development trait [Term] id: VT:0000122 name: blood vessel development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the tubular channels through which the blood circulates." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "vascular development trait" RELATED [] is_a: VT:0000121 ! cardiovascular system development trait [Term] id: VT:0000124 name: tooth quantity namespace: Trait.ontology def: "The proportion or number of the hard structures of the upper and lower jaws used in mastication." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "tooth number" EXACT [] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0000125 name: heart tube morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the early embryonic heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000267 ! heart development trait [Term] id: VT:0000126 name: tooth strength trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of teeth to withstand the application of force without yielding or breaking." [PMID:10742104] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0000128 name: molar growth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the increase in size of the most posterior teeth, located on either side of the jaw and characterized by a large crown and broad chewing surface." [MP:0002689] is_a: VT:0000116 ! tooth development trait [Term] id: VT:0000130 name: cancellous bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of bone that has a lattice-like or spongy structure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "spongy bone morphology trait" EXACT [] synonym: "spongy spongiosa morphology trait" EXACT [] synonym: "spongy substance morphology trait" EXACT [] synonym: "substantia trabecularis morphology trait" EXACT [] synonym: "trabecular bone morphology trait" EXACT [] is_a: VT:0010003 ! bone morphology trait [Term] id: VT:0000131 name: long bone epiphysis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the head of a long bone which, during development and growth, is separated from the shaft by the epiphyseal plate." [MeSH:D004838 "epiphyses", PMID:10742104] synonym: "epiphysis morphology trait" EXACT [] is_a: VT:0003723 ! long bone morphology trait [Term] id: VT:0000132 name: epiphysis width namespace: Trait.ontology def: "The distance from side to side of the part of the head of a long bone which, during development and growth, is separated from the shaft by the epiphyseal plate." [MeSH:D004838 "epiphyses", PMID:10709991] is_a: VT:0000131 ! long bone epiphysis morphology trait [Term] id: VT:0000133 name: long bone metaphysis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the conical section of bone between the epiphysis and diaphysis of the long bones." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10709991] synonym: "metaphysis morphology trait" EXACT [] is_a: VT:0003723 ! long bone morphology trait [Term] id: VT:0000134 name: cortical bone thickness namespace: Trait.ontology def: "The distance between the surfaces of the superficial layer of compact bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10581033] is_a: VT:0003796 ! cortical bone morphology trait [Term] id: VT:0000135 name: outflow tract morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the path through which blood exits the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002127 ! cardiovascular system morphology trait [Term] id: VT:0000136 name: microglial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small, migratory, phagocytic, interstitial cells derived from myeloid progenitor cells and found in the parenchyma of the central nervous system; microglia are scavengers, engulfing dead cells and other debris, and in Alzheimer's disease, microglia are found associated with dying nerve cells and amyloid plaques." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000952 ! central nervous system glial cell morphology trait is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0000137 name: vertebra morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bony segments of the spinal column." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010086 ! vertebral column morphology trait [Term] id: VT:0000138 name: vertebra quantity namespace: Trait.ontology def: "The proportion or number of bony segments of the spinal column." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "vertebra number" EXACT [] synonym: "vertebrae number" EXACT [] is_a: VT:0000137 ! vertebra morphology trait [Term] id: VT:0000139 name: transverse process morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bony protrusion on either side of the arch of a thoracic vertebrae." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10804168, PMID:10804169] is_a: VT:0003047 ! thoracic vertebra morphology trait [Term] id: VT:0000140 name: pedicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of part of the posteriorlateral vertebral arch of a thoracic vertebra." [PMID:10804168, PMID:10804169] is_a: VT:0003047 ! thoracic vertebra morphology trait [Term] id: VT:0000141 name: vertebral body morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the main portion of the vertebra, anterior to the vertebral canal." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10572046] is_a: VT:0000137 ! vertebra morphology trait [Term] id: VT:0000142 name: outer ear thickness namespace: Trait.ontology def: "The distance between the exterior surface and the interior surface of the outer ear." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000017 ! outer ear size trait [Term] id: VT:0000149 name: scapula morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of either or both of the large, flat bones of the shoulder girdle." [MP:0000149] synonym: "shoulder blade morphology trait" EXACT [] is_a: VT:0010089 ! shoulder girdle morphology trait [Term] id: VT:0000150 name: rib morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the elongated, curved bones forming the bony wall of the chest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9778510] is_a: VT:0004134 ! thorax morphology trait is_a: VT:0010092 ! thoracic cage morphology trait [Term] id: VT:0000151 name: atrioventricular canal partitioning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which the right and left sides of the heart become separated." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000267 ! heart development trait [Term] id: VT:0000152 name: proximal rib morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the rib structures near the spine; ribs do not contact vertebrae." [PMID:10804168, PMID:10804169] is_a: VT:0000150 ! rib morphology trait [Term] id: VT:0000153 name: blood circulatory physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable functional characteristic related to the function of or processes in the blood or vasculature." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_obsolete: true [Term] id: VT:0000154 name: lymph circulatory physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable functional characteristic related to the function of or processes in the flow of lymph through its vasculature or of the lymph or vasculature itself." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_obsolete: true [Term] id: VT:0000155 name: rib attachment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the attachment of ribs to the vertebral column or to the sternum." [PMID:7925010] is_a: VT:0000150 ! rib morphology trait [Term] id: VT:0000157 name: sternum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the long, flat bone of the chest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7925010] is_a: VT:0004134 ! thorax morphology trait is_a: VT:0010092 ! thoracic cage morphology trait [Term] id: VT:0000159 name: xiphoid process morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the posterior/inferior tip of the sternum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9294190] is_a: VT:0000157 ! sternum morphology trait [Term] id: VT:0000163 name: cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nonvascular, resilient, flexible connective tissue found primarily in joints, walls of the thorax, and tubular structures, but which also comprises most of the skeleton in early fetal life; some species have skeletons that are completely composed of cartilage which is never ossified." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001248 ! connective tissue morphology trait [Term] id: VT:0000164 name: cartilage development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the nonvascular, resilient, flexible connective tissue found primarily in joints, walls of the thorax, and tubular structures, but which also comprises most of the skeleton in early fetal life. Some aquatic vertebrates have skeletons comprised entirely of cartilage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010065 ! connective tissue development trait [Term] id: VT:0000165 name: hypertrophic chondrocyte zone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the layer of the epiphyseal plate where no cell division occurs and chondrocytes begin to terminally differentiate." [http://www.wheelessonline.com "Wheeless' Textbook of Orthopaedics"] synonym: "hypertrophic cell zone morphology trait" EXACT [] synonym: "maturation zone morphology trait" EXACT [] is_a: VT:0003055 ! epiphyseal plate morphology trait [Term] id: VT:0000166 name: chondrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of non-dividing cartilage cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9144284] synonym: "cartilage cell morphology trait" EXACT [] is_a: VT:0000163 ! cartilage morphology trait [Term] id: VT:0000167 name: chondrocyte quantity namespace: Trait.ontology def: "The proportion or number of non-dividing cartilage cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10742104] synonym: "cartilage cell number" EXACT [] synonym: "chondrocyte number" EXACT [] is_a: VT:0000166 ! chondrocyte morphology trait [Term] id: VT:0000170 name: blood vessel physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the tubular channels through which the blood circulates." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0001544 ! cardiovascular system physiology trait [Term] id: VT:0000171 name: blood physiology trait namespace: Trait.ontology def: "Any measurable functional characteristic related to the function of or processes in the fluid that circulates through the heart, arteries, veins, and capillaries, carrying oxygen and nutritive materials and removing waste products and carbon dioxide." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0001544 ! cardiovascular system physiology trait [Term] id: VT:0000172 name: bone marrow cell quantity namespace: Trait.ontology def: "The proportion or number of cells that make up the core cavities of bones." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0002398 ! bone marrow cell morphology trait [Term] id: VT:0000173 name: lymph vessel physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the lymph vessels." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0001790 ! immune system physiology trait is_a: VT:0010040 ! lymphatic system physiology trait [Term] id: VT:0000174 name: lymph physiology trait namespace: Trait.ontology def: "Any measurable functional characteristic related to the function of or processes in the fluid which is collected from the tissues throughout the body, flows in the lymphatic vessels, and is eventually added to the venous blood circulation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001790 ! immune system physiology trait is_a: VT:0010040 ! lymphatic system physiology trait [Term] id: VT:0000175 name: hemodynamics trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the circulation of blood throughout the body, including both the movement and the forces created by the movement." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000171 ! blood physiology trait [Term] id: VT:0000179 name: blood molecular composition trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the proportions of proteins, minerals, nutrients, gases, or other substances in the blood.\nconsider: VT:0015078" [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "blood chemistry" RELATED [] is_obsolete: true [Term] id: VT:0000180 name: blood cholesterol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood cholesterol level" RELATED [] synonym: "circulating cholesterol level" RELATED [] is_a: VT:0003947 ! cholesterol amount is_a: VT:0003949 ! blood lipid amount [Term] id: VT:0000181 name: blood LDL cholesterol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of low density lipoprotein, which normally transports cholesterol to tissues other than the liver." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "circulating LDL cholesterol amount" EXACT [] synonym: "circulating LDL cholesterol level" RELATED [] synonym: "LDL cholesterol level" BROAD [] synonym: "LDL level" RELATED [] is_a: VT:0000180 ! blood cholesterol amount [Term] id: VT:0000182 name: blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the movement of blood within a vessel or tissue." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000175 ! hemodynamics trait [Term] id: VT:0000183 name: blood pressure trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the hydrostatic force exerted by the blood perpendicular to the blood-tissue surface." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000175 ! hemodynamics trait [Term] id: VT:0000184 name: blood HDL cholesterol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of high density lipoprotein; this molecule transports cholesterol to the liver for excretion in bile." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "circulating HDL cholesterol amount" EXACT [] synonym: "circulating HDL cholesterol level" RELATED [] synonym: "HDL cholesterol level" RELATED [] synonym: "HDL level" RELATED [] is_a: VT:0000180 ! blood cholesterol amount [Term] id: VT:0000185 name: blood flow velocity namespace: Trait.ontology def: "OBSOLETE. The speed at which blood moves through the vessels." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_obsolete: true [Term] id: VT:0000186 name: blood shear trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the mechanical force exerted by the blood parallel to the blood-tissue surface." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000175 ! hemodynamics trait [Term] id: VT:0000187 name: triglyceride amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of this molecule, glycerol esterified at each of its three hydroxyl groups by a fatty acid; triglyceride is an important molecule for storage of fatty acids in adipose tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "triacylglycerol level" EXACT [] synonym: "triglyceride level" EXACT [] is_a: VT:0001547 ! lipid amount [Term] id: VT:0000188 name: blood glucose amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the monosaccharide that is the end product of carbohydrate digestion; D-glucose serves as a primary energy source for living organisms." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "blood glucose level" RELATED [] xref: ATOL:0000097 is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0000189 name: blood vessel distensibilty trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the blood vessels (tubular channels through which the blood circulates) to stretch." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000170 ! blood vessel physiology trait [Term] id: VT:0000190 name: blood vessel permeability trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of gases, liquids, or solutes to pass through the blood vessel wall." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000170 ! blood vessel physiology trait [Term] id: VT:0000192 name: mineral amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of any inorganic element or compound that has importance in body functions." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0005636 ! mineral homeostasis trait [Term] id: VT:0000194 name: blood vessel proliferation trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the process of increasing the number of blood vessels within a given area or volume of tissue.\nconsider: VT:0010299, VT:0010300" [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_obsolete: true [Term] id: VT:0000195 name: blood vessel reactivity trait namespace: Trait.ontology def: "Any measurable characteristic related to the ability of a blood vessel to change diameter in response to a chemical or mechanical signal." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000170 ! blood vessel physiology trait [Term] id: VT:0000197 name: vasodilation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of a blood vessel to increase its diameter in response to a chemical or mechanical signal." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000195 ! blood vessel reactivity trait [Term] id: VT:0000198 name: vasoconstriction trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of a blood vessel to reduce its diameter in response to a chemical or mechanical signal." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000195 ! blood vessel reactivity trait [Term] id: VT:0000199 name: blood albumin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this most abundant of the plasma proteins." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "albumin level" RELATED [] synonym: "circulating albumin level" RELATED [] is_a: VT:0005416 ! blood protein amount [Term] id: VT:0000202 name: blood alkaline phosphatase amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this enzyme, which hydrolyzes orthophosphoric monoesters." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "alkaline phosphatase activity" RELATED [] synonym: "alkaline phosphatase level" RELATED [] synonym: "AP level" RELATED [] synonym: "circulating alkaline phosphatase level" RELATED [] synonym: "circulating ALP levels" RELATED [] is_a: VT:0001570 ! blood enzyme amount [Term] id: VT:0000203 name: blood aspartate transaminase amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this enzyme, which catalyzes the reversible transfer of an amine group from l-glutamic acid to oxaloacetic acid, forming alpha-ketoglutaric acid and l-aspartic acid; aids in diagnosis of viral hepatitis and myocardial infarction." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "aspartate aminotransferase level" RELATED [] synonym: "aspartate transaminase level" RELATED [] synonym: "AST level" RELATED [] is_a: VT:0001570 ! blood enzyme amount [Term] id: VT:0000217 name: leukocyte quantity namespace: Trait.ontology def: "The proportion or number of nucleated cells of the myeloid or lymphoid lineages, found in blood or other tissue." [CL:0000738 "leukocyte", MeSH:D007962] synonym: "leukocyte cell number" EXACT [] synonym: "leukocyte count " EXACT [] synonym: "leukocyte number" EXACT [] synonym: "WBC number" EXACT [] synonym: "white blood cell count" EXACT [] synonym: "white blood cell number" EXACT [] is_a: VT:0000237 ! blood cell quantity is_a: VT:0008246 ! leukocyte morphology trait is_a: VT:0010191 ! immune system cell quantity [Term] id: VT:0000222 name: neutrophil quantity namespace: Trait.ontology def: "The proportion or number of the granular leukocytes that have a three- to five-lobed nucleus and a cytoplasm containing inconspicuous granules." [RGD:MS] synonym: "neutrophil cell number" EXACT [] synonym: "neutrophil count" EXACT [] synonym: "neutrophil number" EXACT [] is_a: VT:0000334 ! granulocyte quantity is_a: VT:0005065 ! neutrophil morphology trait [Term] id: VT:0000223 name: monocyte quantity namespace: Trait.ontology def: "The proportion or number of large, phagocytic mononuclear leukocytes produced in the vertebrate bone marrow and released into the blood." [MeSH:D009000 "monocytes", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "monocyte cell number" EXACT [] synonym: "monocyte count" EXACT [] is_a: VT:0000217 ! leukocyte quantity is_a: VT:0002620 ! monocyte morphology trait [Term] id: VT:0000228 name: thrombopoiesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to development of the non-nucleated cells of the blood (platelets, thrombocytes) involved in blood coagulation." [MP:0000288] synonym: "platelet development trait" NARROW [] synonym: "thrombocyte development trait" NARROW [] is_a: VT:0002123 ! hematopoiesis trait [Term] id: VT:0000229 name: megakaryocyte development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of these very large bone marrow cells which release mature platelets." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000228 ! thrombopoiesis trait is_a: VT:0010180 ! bone marrow cell development trait [Term] id: VT:0000231 name: heart excitatory physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes involved in generation and conduction of electrical impulses in the heart." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] synonym: "cardiac excitatory physiology trait" EXACT [] is_a: VT:0010301 ! heart physiology trait [Term] id: VT:0000237 name: blood cell quantity namespace: Trait.ontology def: "The proportion or numbers of the various types of blood cells." [MP:0002429] synonym: "blood cell number" EXACT [] synonym: "hematopoietic cell number" EXACT [] synonym: "hemopoietic cell number" EXACT [] is_a: VT:0002429 ! blood cell morphology trait [Term] id: VT:0000239 name: myeloid progenitor cell quantity namespace: Trait.ontology def: "The proportion or number of precursors of the myeloid cell types." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator", PMID:10673499] synonym: "myeloid progenitor number" EXACT [] is_a: VT:0000172 ! bone marrow cell quantity is_a: VT:0002123 ! hematopoiesis trait [Term] id: VT:0000240 name: hematopoiesis location trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical site where formation and development of blood cells occurs." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MP:0000240] is_a: VT:0002123 ! hematopoiesis trait [Term] id: VT:0000242 name: heart electrical impulse generation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the generation of action potentials in cardiac muscle." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000231 ! heart excitatory physiology trait [Term] id: VT:0000244 name: cardiac output amount namespace: Trait.ontology def: "The proportion, quantity, or volume of blood that is ejected from the heart into the aorta." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000182 ! blood flow trait [Term] id: VT:0000245 name: erythropoiesis trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the formation of red blood cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "erythrocytopoiesis" EXACT [] is_a: VT:0002123 ! hematopoiesis trait [Term] id: VT:0000248 name: erythrocyte size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cells in the blood that carry oxygen, red blood cells" [MP:0002447] synonym: "red blood cell size trait" EXACT [] is_a: VT:0002447 ! erythrocyte morphology trait [Term] id: VT:0000254 name: cerebrospinal fluid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the serum-like fluid that circulates through the ventricles of the brain, the cavity of the spinal cord, and the subarachnoid space, functioning in shock absorption." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0000255 name: regional blood flow trait namespace: Trait.ontology def: "Any measurable functional characteristic related to blood flow in a specific region of the body, tissue, or organ." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000182 ! blood flow trait [Term] id: VT:0000259 name: capillary permeability trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of gases, liquids, or solutes to pass through the capillary wall." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000190 ! blood vessel permeability trait [Term] id: VT:0000260 name: hemostasis trait namespace: Trait.ontology def: "Any measurable functional characteristic related to the process of prevention of blood loss." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000171 ! blood physiology trait [Term] id: VT:0000261 name: arterial blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood flow in the arteries." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000182 ! blood flow trait [Term] id: VT:0000262 name: venous blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood flow in the veins." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000182 ! blood flow trait [Term] id: VT:0000263 name: capillary blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood flow in the capillaries." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000182 ! blood flow trait [Term] id: VT:0000266 name: heart morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ that pumps blood through the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac morphology trait" EXACT [] xref: MP:0000266 is_a: VT:0002127 ! cardiovascular system morphology trait [Term] id: VT:0000267 name: heart development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the organ that pumps blood through the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac development trait" EXACT [] xref: GO:0007507 "heart development" xref: MP:0000267 is_a: VT:0000121 ! cardiovascular system development trait [Term] id: VT:0000268 name: vibrissa quantity namespace: Trait.ontology def: "The proportion or number of stiff hairs projecting from the face, which act as touch receptors." [MeSH:D014738 "vibrissae", MP:0009003] synonym: "vibrissa number" RELATED [] synonym: "vibrissae number" RELATED [] is_a: VT:0002098 ! vibrissa morphology trait [Term] id: VT:0000269 name: heart tube looping morphogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristics pertaining to the process by which the embryonic heart tube bends to transform from a straight tube into the final folded configuration of the adult heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac looping morphogenesis" RELATED [] is_a: VT:0000267 ! heart development trait [Term] id: VT:0000272 name: aorta morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the main trunk of the systemic arteries." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: MP:0000272 is_a: VT:0002191 ! artery morphology trait [Term] id: VT:0000276 name: right ventricle cell size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cells in the right lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "right ventricular cell size trait" RELATED [] is_a: VT:0002754 ! right ventricle size trait [Term] id: VT:0000277 name: heart shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac shape" EXACT [] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0000285 name: heart valve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the membranous folds of the heart that prevent reflux of fluid." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac valve morphology trait" RELATED [] xref: MP:0000285 is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0000288 name: pericardium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fibroserous membrane covering the heart and beginning of the great vessels." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "pericardial morphology trait" EXACT [] xref: GO:0007513 "pericardial cell differentiation" is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0000307 name: blood-inner ear barrier physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier." [MP:0004999] is_a: VT:0003878 ! ear physiology trait [Term] id: VT:0000315 name: urine hemoglobin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of the oxygen-carrying protein of erythrocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:12594949] synonym: "urine hemoglobin level" EXACT [] is_a: VT:0005160 ! urine protein amount [Term] id: VT:0000319 name: endolymph physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes involved in the production (volume) or ionic homeostasis of the fluid contained within the membranous labyrinth of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003878 ! ear physiology trait [Term] id: VT:0000330 name: endolymph production trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the secretion of the fluid that is normally contained within the membranous labyrinth of the inner ear." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000319 ! endolymph physiology trait [Term] id: VT:0000334 name: granulocyte quantity namespace: Trait.ontology def: "The proportion or number of leukocytes that have abundant granules in the cytoplasm, including basophils, neutrophils, and eosinophils." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "granulocyte number" EXACT [] is_a: VT:0000217 ! leukocyte quantity is_a: VT:0002441 ! granulocyte morphology trait [Term] id: VT:0000336 name: mast cell quantity namespace: Trait.ontology def: "The proportion or number of the cells that are found in almost all tissues, containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation." [MeSH:D008407 "mast cells"] is_a: VT:0000217 ! leukocyte quantity is_a: VT:0000359 ! mast cell morphology trait [Term] id: VT:0000340 name: perilymph physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the fluid contained within the osseous labyrinth, surrounding and protecting the membranous labyrinth." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003878 ! ear physiology trait [Term] id: VT:0000341 name: bile color namespace: Trait.ontology def: "The visually perceived hue of the fluid secreted by the liver through the bile duct, determined by relative levels of bile pigments." [PMID:12429862, RGD:DHM "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0005085 ! gall bladder physiology trait [Term] id: VT:0000344 name: Cajal-Retzius cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the distinct population of large, bipolar cells, distributed in a continuous band along the marginal zone of the cortex extending to the molecular layer of the dentate gyrus." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0000792 ! cortical marginal zone morphology trait is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0000348 name: aerobic fitness trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the metabolic ability to do physical work." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:cur "Rat Genome Database submission"] is_a: VT:1000152 ! wellness/fitness trait [Term] id: VT:0000353 name: vestibular system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the sensory system responsible for the sense of head position and movement of the body through space." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003878 ! ear physiology trait is_a: VT:0015097 ! equilibrioception system physiology trait [Term] id: VT:0000357 name: limb quantity namespace: Trait.ontology def: "The proportion or number of the projecting, paired, jointed appendages of an animal body used especially for movement and grasping but sometimes modified into sensory or sexual organ." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "limb number" EXACT [] is_a: VT:0002109 ! limb morphology trait [Term] id: VT:0000359 name: mast cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a cell that is found in almost all tissues, containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation." [ISBN:068340007X, MeSH:D008407 "mast cells"] is_a: VT:0008246 ! leukocyte morphology trait [Term] id: VT:0000361 name: mast cell protease storage trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the amounts of proteolytic enzymes stored in mast cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "storage of mast-cell proteases" EXACT [] is_a: VT:0000359 ! mast cell morphology trait [Term] id: VT:0000362 name: mast cell histamine storage trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the amounts of histamine stored in mast cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "histamine storage" BROAD [] synonym: "storage of histamine" BROAD [] is_a: VT:0000359 ! mast cell morphology trait [Term] id: VT:0000363 name: cochlear microphonics trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the bioelectric potentials produced by the hair cells of the organ of Corti in response to sound; the cochlear microphonic (CM) is an electric response dominated by OHC receptor potentials from the basal turn of the cochlea and provides a measure of transducer function in OHCs; in an active ear, CM waveforms show post-stimulus ringing (i.e. a cochlear echo) whereas in a passive ear system, CM decays at the cessation of the tone burst." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004412 ! cochlear potential trait is_a: VT:0004434 ! cochlear outer hair cell physiology trait [Term] id: VT:0000365 name: hearing electrophysiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes involved in auditory function as it relates to electrical phenomena." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002104 ! hearing physiology trait [Term] id: VT:0000366 name: brainstem auditory evoked potential namespace: Trait.ontology def: "The electrical activity generated in response to short tone bursts; may be used to evaluate sensorineural hearing function." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "ABRs" RELATED [] synonym: "BAEPs" RELATED [] synonym: "brainstem evoked responses" RELATED [] is_a: VT:0000365 ! hearing electrophysiology trait [Term] id: VT:0000367 name: coat/hair morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010007 ! skin adnexa morphology trait [Term] id: VT:0000374 name: cochlear frequency tuning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the frequency resolution of the cochlea, normally determined by the passive mechanical properties of the basilar membrane and active feedback from the outer hair cells which detect and amplify sound-induced basilar membrane motions." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "cochlear tuning" RELATED [] synonym: "frequency resolution of the cochlea" RELATED [] is_a: VT:0000365 ! hearing electrophysiology trait is_a: VT:0000483 ! sensorineural hearing physiology trait [Term] id: VT:0000379 name: hair follicle quantity namespace: Trait.ontology def: "The proportion or number of the tubular invaginations of the epidermis from which the hair shaft develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "hair follicle number" EXACT [] is_a: VT:0002076 ! hair follicle morphology trait [Term] id: VT:0000383 name: hair follicle orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement in relation to each other or the body of the tubular invaginations of the epidermis from which the hair shafts develop." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002076 ! hair follicle morphology trait [Term] id: VT:0000384 name: hair follicle organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the tubular invaginations of the epidermis from which the hair shaft develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002076 ! hair follicle morphology trait [Term] id: VT:0000385 name: hair follicle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the tubular invaginations of the epidermis from which the hair shaft develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002076 ! hair follicle morphology trait [Term] id: VT:0000386 name: hair follicle root sheath morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epidermally derived layer surrounding the hair follicle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002076 ! hair follicle morphology trait [Term] id: VT:0000413 name: phalanx quantity namespace: Trait.ontology def: "The proportion or number of the long bones in any of the digits." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "phalanx number" EXACT [] is_a: VT:0005306 ! phalanx morphology trait [Term] id: VT:0000414 name: hair retention trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to maintain the fine, keratinized filamentous growths arising from the epidermis of mammals without noticeable loss." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:4000007 ! coat/hair physiology trait [Term] id: VT:0000416 name: hair amount namespace: Trait.ontology def: "The proportion or quantity of the fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "coat density" RELATED [] is_a: VT:0000367 ! coat/hair morphology trait [Term] id: VT:0000417 name: hair length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000367 ! coat/hair morphology trait [Term] id: VT:0000424 name: hair growth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the increase in length of the fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:4000007 ! coat/hair physiology trait [Term] id: VT:0000425 name: eyelash retention trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to maintain the stiff hairs projecting from the margin of the eyelid without noticeable loss." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cilia retention" EXACT [] is_a: VT:4000007 ! coat/hair physiology trait [Term] id: VT:0000427 name: hair cycle trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the cyclical phases of growth (anagen), regression (catagen), and quiescence (telogen) in the life of a hair." [BioON:Biology Online] is_a: VT:4000007 ! coat/hair physiology trait [Term] id: VT:0000428 name: craniofacial morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the region of the body that includes the front part of the head from the chin to the top of the forehead, where the mouth, eyes, nose, and other features are located, and the part of the skull enclosing the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000428] is_a: VT:0000432 ! head morphology trait [Term] id: VT:0000430 name: palatine process morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the medially directed shelves of the maxillae that, with the horizontal plate of the palatine bone, form the bony palate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004538] synonym: "maxillary palatial process morphology trait" EXACT [] synonym: "maxillary shelf morphology trait" EXACT [] synonym: "palatal process morphology trait" EXACT [] is_a: VT:0000455 ! maxilla morphology trait [Term] id: VT:0000431 name: palatine shelf morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the outgrowth of the palatine bone; normally fuses with maxillary shelf to form secondary palate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7914451] synonym: "horizontal plate morphology trait" RELATED [] synonym: "palatal shelf morphology trait" EXACT [] synonym: "palatine palatal process morphology trait" EXACT [] is_a: VT:0005249 ! palatine bone morphology trait [Term] id: VT:0000432 name: head morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000432] is_a: VT:0005382 ! head trait [Term] id: VT:0000438 name: skull morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bones surrounding the brain and bones of the lower face and jaws." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000438] synonym: "cranium morphology trait" EXACT [] is_a: VT:0002116 ! craniofacial bone morphology trait [Term] id: VT:0000443 name: snout morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the flesh covered anterior facial part that contains the nose, jaws, teeth, and mouth that projects from the head." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "muzzle morphology trait" EXACT [] is_a: VT:0003743 ! facial morphology trait is_a: VT:0015066 ! surface structure morphology trait [Term] id: VT:0000444 name: snout shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the flesh covered anterior facial part that contains the nose, jaws, teeth and mouth that projects from the head." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000443 ! snout morphology trait [Term] id: VT:0000446 name: snout length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the anterior facial part of the muzzle." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000002 ! head size trait is_a: VT:0000444 ! snout shape trait [Term] id: VT:0000449 name: nasal bridge width namespace: Trait.ontology def: "The distance from side to side across the upper part of the ridge of the nose." [RGD:MS] is_a: VT:0002233 ! nose morphology trait [Term] id: VT:0000452 name: mouth morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the oral cavity." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0003744 ! orofacial morphology trait [Term] id: VT:0000454 name: jaw morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bony framework of the mouth where the teeth are held." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000454] is_a: VT:0000438 ! skull morphology trait [Term] id: VT:0000455 name: maxilla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the upper bony framework of the mouth where the superior teeth are held." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000455] synonym: "upper jaw morphology trait" EXACT [] is_a: VT:0000454 ! jaw morphology trait is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0000458 name: mandible morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the lower bony framework of the mouth where the inferior teeth are held." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000458] synonym: "lower jaw morphology trait" EXACT [] is_a: VT:0000454 ! jaw morphology trait is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0000461 name: presacral vertebra quantity namespace: Trait.ontology def: "The proportion or number of bony segments of the spinal column anterior/superior to the sacrum/sacral vertebrae." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "presacral vertebra number" EXACT [] synonym: "presacral vertebrae number" EXACT [] is_a: VT:0000138 ! vertebra quantity [Term] id: VT:0000462 name: gastrointestinal system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the components of the system that converts ingested food to nutrients and energy." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "digestive system morphology trait" RELATED [] is_a: VT:1000776 ! alimentary system trait [Term] id: VT:0000466 name: esophageal epithelium cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the epithelial layer of the esophagus." [MS:RGD, PMID:9563851] is_a: VT:0000468 ! esophageal epithelium morphology trait [Term] id: VT:0000467 name: esophagus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the part of the digestive canal through which food passes from the pharynx to the stomach." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "oesophagus morphology trait" EXACT [] xref: ATOL:0001062 is_a: VT:0000462 ! gastrointestinal system morphology trait [Term] id: VT:0000468 name: esophageal epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the epithelial layer of the esophagus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0000467 ! esophagus morphology trait [Term] id: VT:0000469 name: esophageal squamous epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the scaly epithelial layer of the esophagus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator", PMID:10227294] is_a: VT:0000468 ! esophageal epithelium morphology trait [Term] id: VT:0000470 name: stomach morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the sac-like structure of the digestive canal between the esophagus and the small intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abomasum morphology trait" RELATED [] xref: ATOL:0000243 is_a: VT:0000462 ! gastrointestinal system morphology trait [Term] id: VT:0000471 name: stomach epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the epithelial layer of the stomach." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0000470 ! stomach morphology trait [Term] id: VT:0000472 name: stomach squamous epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the scaly epithelial layer of the stomach." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000471 ! stomach epithelium morphology trait [Term] id: VT:0000473 name: stomach glandular epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the gland-containing epithelial layer of the stomach." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000471 ! stomach epithelium morphology trait [Term] id: VT:0000474 name: foregut morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cephalic portion of the primitive digestive tube of the embryo." [PMID:8837770] is_a: VT:0003119 ! gastrointestinal system development trait [Term] id: VT:0000476 name: cochlear nerve fiber response trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the electrophysiological recordings from a single or several auditory nerve fiber(s)." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "auditory nerve fiber response" RELATED [] is_a: VT:0000365 ! hearing electrophysiology trait is_a: VT:0000483 ! sensorineural hearing physiology trait is_a: VT:0003477 ! nerve fiber response trait [Term] id: VT:0000477 name: intestine morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the digestive tube passing from the stomach to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000477 is_a: VT:0000462 ! gastrointestinal system morphology trait [Term] id: VT:0000478 name: intestine development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the digestive tube passing from the stomach to the anus during its formation and differentiation." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003119 ! gastrointestinal system development trait [Term] id: VT:0000479 name: intestinal cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells comprising the intestine." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "enterocyte morphology trait" EXACT [] is_a: VT:0000477 ! intestine morphology trait [Term] id: VT:0000481 name: intestinal cell quantity namespace: Trait.ontology def: "The proportion or number of cells comprising the intestine." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "enterocyte number" EXACT [] synonym: "intestinal cell number" EXACT [] is_a: VT:0000479 ! intestinal cell morphology trait [Term] id: VT:0000482 name: fibula length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the lateral and smaller bone of the lower/hind limb." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_a: VT:0002187 ! fibula morphology trait [Term] id: VT:0000483 name: sensorineural hearing physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes involved in the form of hearing due to processes occurring in the auditory division of cranial nerve VIII or the inner ear." [MP:0006329] synonym: "sensorineural hearing function" RELATED [] is_a: VT:0002104 ! hearing physiology trait [Term] id: VT:0000484 name: pulmonary artery morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the artery that conveys unaerated blood to the lungs." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: MP:0000484 is_a: VT:0002191 ! artery morphology trait [Term] id: VT:0000485 name: otoacoustic response trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the acoustic energy produced by the cochlea in the presence or absence of sound stimulation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "otoacoustic emissions" RELATED [] is_a: VT:0002104 ! hearing physiology trait [Term] id: VT:0000488 name: intestinal epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cellular avascular layer of the digestive tube passing from the stomach to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000511 ! intestinal mucosa morphology trait [Term] id: VT:0000489 name: large intestine morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the distal portion of the digestive tube that extends from the ileocecal valve to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000250 is_a: VT:0000477 ! intestine morphology trait [Term] id: VT:0000490 name: crypt of Lieberkuhn morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the tubular intestinal glands found in the mucosal membranes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000511 ! intestinal mucosa morphology trait is_a: VT:4000012 ! mucous gland morphology trait [Term] id: VT:0000492 name: rectum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the terminal portion of the intestinal tube adjacent to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000281 is_a: VT:0000489 ! large intestine morphology trait [Term] id: VT:0000494 name: cecum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the large sac at the ileum and large intestine junction." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000287 is_a: VT:0000489 ! large intestine morphology trait [Term] id: VT:0000495 name: colon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the portion of the large intestine between the cecum and the rectum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000305 is_a: VT:0000489 ! large intestine morphology trait [Term] id: VT:0000496 name: small intestine morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the upper portion of the digestive tract, between the stomach and the large intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] xref: ATOL:0000306 is_a: VT:0000477 ! intestine morphology trait [Term] id: VT:0000497 name: small intestine orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the small intestinal tract in relation to other organs or to the body." [PMID:9144284] is_a: VT:0000496 ! small intestine morphology trait is_a: VT:0003283 ! digestive organ orientation trait [Term] id: VT:0000501 name: digestive secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a physiologically active substance (usually but not exclusively in liquid form) from a cell or a gland of the digestive system." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0001664 ! digestion trait [Term] id: VT:0000509 name: digestive mucosecretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a physiologically active substance (usually but not exclusively in liquid form) from the mucous membrane of the digestive system." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "mucosecretion" EXACT [] is_a: VT:0000501 ! digestive secretion trait [Term] id: VT:0000511 name: intestinal mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mucous lining of the intestine; this consists of epithelium, lamina propria, and a layer of smooth muscle cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000477 ! intestine morphology trait [Term] id: VT:0000516 name: urinary system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the organs involved in the production or excretion of urine." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "excretory system morphology trait" EXACT [] synonym: "urinary organ morphology trait" NARROW [] is_a: VT:1000777 ! urinary system trait [Term] id: VT:0000521 name: kidney cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outer area of the kidney, which contains the glomeruli and the capsules that enclose them, as well as the proximal and distal convoluted tubules." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0000524 name: kidney tubule quantity namespace: Trait.ontology def: "The proportion or number of loops of Henle, proximal and distal convoluted tubules, and collecting ducts in the kidney." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:MS] synonym: "renal tubule number" EXACT [] is_a: VT:0002703 ! kidney tubule morphology trait [Term] id: VT:0000526 name: kidney pyramid size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the pyramidal masses; contain part of the secreting tubules and collecting tubules." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9144284] synonym: "inner medullary pyramid size trait" EXACT [] synonym: "malpighian pyramid size trait" EXACT [] synonym: "medullary pyramid size trait" EXACT [] is_a: VT:0004192 ! kidney pyramid morphology trait [Term] id: VT:0000527 name: kidney development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "renal development trait" EXACT [] xref: GO:0001822 "kidney development" is_a: VT:0003942 ! urinary system development trait [Term] id: VT:0000528 name: kidney development initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of the induction and/or differentiation of the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7926784] synonym: "onset of renal development trait" EXACT [] is_a: VT:0000527 ! kidney development trait [Term] id: VT:0000530 name: kidney blood vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the network of vessels that convey blood in the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "kidney vascular morphology trait" RELATED [] synonym: "kidney vasculature" EXACT [] synonym: "renal vasculature" RELATED [] xref: MP:0000530 is_a: VT:0001614 ! blood vessel morphology trait is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0000534 name: ureter morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tube that conducts the urine from the renal pelvis to the bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000516 ! urinary system morphology trait [Term] id: VT:0000535 name: ureter luminal epithelial cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the luminal epithelium of the tube that conducts the urine from the renal pelvis to the bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10419685, RGD:MS] is_a: VT:0000534 ! ureter morphology trait [Term] id: VT:0000537 name: urethra morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the canal leading from the bladder, discharging the urine externally." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000516 ! urinary system morphology trait [Term] id: VT:0000538 name: urinary bladder morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the distensible musculomembranous bag for holding urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000516 ! urinary system morphology trait [Term] id: VT:0000539 name: urinary bladder size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the distensible musculomembranous bag for holding urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000538 ! urinary bladder morphology trait [Term] id: VT:0000540 name: urinary bladder epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cellular avascular layer of the distensible musculomembranous bag for holding urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000538 ! urinary bladder morphology trait [Term] id: VT:0000541 name: urinary bladder transitional epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the transitional epithelial layer (stratified epithelium with large, polyploid superfical cells that are dome-shaped when relaxed, but broad and flattened when distended) of the distensible musculomembranous bag for holding urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0000540 ! urinary bladder epithelium morphology trait [Term] id: VT:0000544 name: urinary bladder transitional epithelium thickness namespace: Trait.ontology def: "The distance between the surfaces of the transitional epithelial layer (stratified epithelium with large, polyploid superfical cells that are dome-shaped when relaxed, but broad and flattened when distended) of the distensible musculomembranous bag for holding urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10227294, RGD:MS] is_a: VT:0000541 ! urinary bladder transitional epithelium morphology trait [Term] id: VT:0000548 name: limb length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the projecting, paired, jointed appendages of the body used for movement and grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "leg length" RELATED [] is_a: VT:0002109 ! limb morphology trait [Term] id: VT:0000550 name: forelimb morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior/superior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0002109 ! limb morphology trait [Term] id: VT:0000552 name: radius morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bone situated on the lateral side of the ulna in the forelimb." [ISBN:0-914294-08-3 "Gray's Anatomy"] is_a: VT:0010104 ! forelimb long bone morphology trait [Term] id: VT:0000554 name: carpus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nodular bones of the joint between the radius and ulna of the forelimb and the metacarpal bones." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:978-0028454405 "Greene, EC Anatomy of the Rat"] comment: Note that the bony structure of the human carpals are different. synonym: "carpal bone morphology trait" EXACT [] synonym: "wrist bone morphology trait" EXACT [] is_a: VT:0000550 ! forelimb morphology trait is_a: VT:0002115 ! skeleton extremities morphology trait [Term] id: VT:0000556 name: hindlimb morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior/inferior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0002109 ! limb morphology trait [Term] id: VT:0000558 name: tibia morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010105 ! hindlimb long bone morphology trait [Term] id: VT:0000559 name: femur morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010105 ! hindlimb long bone morphology trait [Term] id: VT:0000571 name: interdigital webbing trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the presence of a fold of skin, or web, between the fingers or toes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true [Term] id: VT:0000572 name: autopod morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the distal elements of the developing limb of vertebrates that will give rise to the pedal or prehensile appendages (e.g. hand, foot, paw, phalanges and/or digits)." [PMID:12560810] is_a: VT:0006279 ! limb development trait [Term] id: VT:0000573 name: hind paw size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical dimensions of the rear feet." [PMID:9845363] is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait [Term] id: VT:0000574 name: foot pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the body of fat on the foot." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait [Term] id: VT:0000579 name: nail morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the thin, horny, translucent plates covering the dorsal surface of the distal end of each terminal phalanx of the digits." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010007 ! skin adnexa morphology trait [Term] id: VT:0000580 name: nail shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of any of the thin, horny, translucent plates covering the dorsal surface of the distal end of each terminal phalanx of the digits." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000579 ! nail morphology trait [Term] id: VT:0000583 name: nail length namespace: Trait.ontology def: "The distance from point to point along the longest axis of any of the thin, horny, translucent plates covering the dorsal surface of the distal end of each terminal phalanx of the digits." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "fingernail length" NARROW [] synonym: "toenail length" NARROW [] is_a: VT:0000579 ! nail morphology trait [Term] id: VT:0000588 name: tail diameter namespace: Trait.ontology def: "The distance across the appendage at the caudal end of the vertebral column." [MP:0002111] is_a: VT:0003456 ! tail size trait [Term] id: VT:0000596 name: liver development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003943 ! hepatobiliary system development trait [Term] id: VT:0000598 name: liver morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0001120 is_a: VT:0002138 ! hepatobiliary system morphology trait [Term] id: VT:0000599 name: liver size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000598 ! liver morphology trait [Term] id: VT:0000602 name: sinusoidal space size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cavities in the liver." [PMID:7854452] is_a: VT:0000598 ! liver morphology trait [Term] id: VT:0000603 name: liver pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "liver color" RELATED [] is_a: VT:0000598 ! liver morphology trait [Term] id: VT:0000606 name: hepatocyte quantity namespace: Trait.ontology def: "The proportion or number of the main structural components of the liver; these are specialized epithelial cells normally organized into interconnected plates called lobules." [PMID:7854452] synonym: "hepatocyte cell number" EXACT [] synonym: "hepatocyte count" EXACT [] synonym: "hepatocyte number" EXACT [] is_a: VT:0000607 ! hepatocyte morphology trait [Term] id: VT:0000607 name: hepatocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the main structural component of the liver; these are specialized epithelial cells normally organized into interconnected plates called lobules." [PMID:7854452] synonym: "liver cell morphology trait" EXACT [] is_a: VT:0000598 ! liver morphology trait [Term] id: VT:0000608 name: hepatocyte organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the main structural component of the liver; these are specialized epithelial cells normally organized into interconnected plates called lobules." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:7854452] is_a: VT:0000607 ! hepatocyte morphology trait [Term] id: VT:0000609 name: liver physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in this bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "liver function" EXACT [] is_a: VT:0002139 ! hepatobiliary system physiology trait [Term] id: VT:0000613 name: salivary gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the saliva-secreting glands of the oral cavity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10906459] is_a: VT:0000050 ! pancreas/salivary gland morphology trait is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0000615 name: palatine gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the salivary gland of the hard palate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:11002344] is_a: VT:0003791 ! minor salivary gland morphology trait [Term] id: VT:0000616 name: palatine gland ductal branching morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the branches and distal tips of the vesicles of the palatine gland." [PMID:11002344] is_a: VT:0000615 ! palatine gland morphology trait is_a: VT:0000620 ! salivary duct morphology trait [Term] id: VT:0000617 name: salivary gland mucosal cell quantity namespace: Trait.ontology def: "The proportion or number of cells that form mucus in the salivary glands." [RGD:MS] synonym: "salivary gland mucosal cell number" EXACT [] is_a: VT:0000615 ! palatine gland morphology trait [Term] id: VT:0000619 name: salivary gland epithelial cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the epithelium of the salivary gland." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000613 ! salivary gland morphology trait [Term] id: VT:0000620 name: salivary duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the tubular canals that carry saliva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10906459] is_a: VT:0000613 ! salivary gland morphology trait [Term] id: VT:0000623 name: salivation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to he flow, secretion, or amount of saliva." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "sialoschesis" EXACT [] is_a: VT:0005310 ! salivary gland physiology trait [Term] id: VT:0000627 name: mammary gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the milk-producing glands in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] xref: ATOL:0000308 is_a: VT:0001119 ! female reproductive system morphology trait is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0000628 name: mammary gland development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the milk-secreting gland in female mammals during early embryogenesis or during sexual maturity or reproduction." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] is_a: VT:0003936 ! reproductive system development trait is_a: VT:0015037 ! gland development trait [Term] id: VT:0000631 name: neuroendocrine gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organized aggregations of cells that function as secretory or excretory organs and that release hormones in response to neural stimuli." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0000632 name: pineal gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small, flattened body located in the depression between the superior colliculi which produces melatonin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "corpus pineale morphology trait" EXACT [] synonym: "epiphysis cerebri morphology trait" EXACT [] synonym: "glandula pinealis morphology trait" EXACT [] synonym: "pineal body morphology trait" EXACT [] is_a: VT:0000631 ! neuroendocrine gland morphology trait is_a: VT:0000840 ! epithalamus morphology trait [Term] id: VT:0000633 name: pituitary gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the compound gland suspended from the base of the hypothalamus, which secretes somatotropins, prolactin, TSH (thyroid-stimulating hormone), gonadotropins, and adrenal corticotropin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "hypophysis morphology trait" EXACT [] is_a: VT:0000631 ! neuroendocrine gland morphology trait is_a: VT:0000830 ! diencephalon morphology trait [Term] id: VT:0000638 name: cochlear hair cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the sensory epithelial cells of the cochlea during their formation and differentiation." [MP:0004589] is_a: VT:0003938 ! ear development trait [Term] id: VT:0000639 name: adrenal gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the endocrine glands located above the kidney responsible for hormone and epinephrine secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10731669] is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0000643 name: adrenal central medulla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the inner portion of the adrenal gland, consisting mainly of chromaffin cells which are responsible for secretion of epinephrine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000643, PMID:10357937] is_a: VT:0000639 ! adrenal gland morphology trait [Term] id: VT:0000646 name: adrenocortical cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells of the adrenal gland." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10357937] is_a: VT:0000639 ! adrenal gland morphology trait [Term] id: VT:0000647 name: sebaceous gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the holocrine glands of the dermis that secrete sebum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0002163 ! gland morphology trait is_a: VT:0010007 ! skin adnexa morphology trait [Term] id: VT:0000652 name: sebaceous gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the holocrine glands of the dermis that secrete sebum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000647 ! sebaceous gland morphology trait [Term] id: VT:0000653 name: sex gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0000655 name: sex gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction." [PMID:10811912] is_a: VT:0000653 ! sex gland morphology trait is_a: VT:0002160 ! reproductive system morphology trait [Term] id: VT:0000659 name: prostate size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the prostate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10906459] synonym: "prostate gland size trait" EXACT [] is_a: VT:0000655 ! sex gland size trait is_a: VT:0001158 ! prostate morphology trait [Term] id: VT:0000660 name: lateral prostate size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lateral lobe of the prostate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10906459] is_a: VT:0000659 ! prostate size trait [Term] id: VT:0000661 name: ventral prostate size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the ventral lobe of the prostate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10906459] is_a: VT:0000659 ! prostate size trait [Term] id: VT:0000662 name: mammary ductal tree branching trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the development of the channels that secrete milk and direct milk to the nipple." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000628 ! mammary gland development trait [Term] id: VT:0000665 name: coagulating gland ductal branching trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the branches and distal tips of the vesicles of the coagulating gland." [PMID:11002344] is_a: VT:0001163 ! coagulating gland morphology trait [Term] id: VT:0000666 name: prostate duct quantity namespace: Trait.ontology def: "The proportion or number of minute canals that pass the prostatic secretions to the urethra." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10906459] is_a: VT:0001158 ! prostate morphology trait [Term] id: VT:0000674 name: sweat gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the coiled glands of the skin that secrete sweat." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002163 ! gland morphology trait is_a: VT:0010007 ! skin adnexa morphology trait [Term] id: VT:0000675 name: palmar eccrine gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, or pattern of the sweat glands of the palm." [MP:0000675] is_a: VT:0000674 ! sweat gland morphology trait is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait [Term] id: VT:0000678 name: parathyroid gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one of the two small, paired endocrine glands, usually found embedded in the connective tissue capsule on the posterior surface of the thyroid gland; they secrete parathyroid hormone (PTH) that regulates calcium and phosphorus metabolism." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0000681 name: thyroid gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the endocrine gland located in the front and to the sides of the upper part of the trachea and which secretes thyroid hormone and calcitonin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0000685 name: immune system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organs or cells associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "lymphoid system morphology trait" RELATED [] synonym: "lymphopoietic system morphology trait" RELATED [] is_a: VT:1000783 ! immune system trait [Term] id: VT:0000689 name: spleen morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organ that functions to filter blood and to store red corpuscles and platelets." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "spleen structure" EXACT [] synonym: "splenic morphology trait" EXACT [] is_a: VT:0002722 ! immune system organ morphology trait is_a: VT:0010250 ! hematopoietic system morphology trait [Term] id: VT:0000696 name: Peyer's patch morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the protruding lymphoid tissue located on the mucosa of the small intestine that is composed of densely packed B cell follicles." [MeSH:D010581 "Peyer's patches", PMID:15841100] is_a: VT:0002378 ! gut-associated lymphoid tissue morphology trait [Term] id: VT:0000700 name: lymph node quantity namespace: Trait.ontology def: "The proportion or number of the oval or bean shaped bodies located along the lymphatic system that consist of densely packed lymphocytes, lymph fluid and connective tissue; the sites where acquired immune responses are launched." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0000701 name: lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the oval or bean shaped bodies located along the lymphatic system that consist of densely packed lymphocytes, lymph fluid and connective tissue; the sites where acquired immune responses are launched." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002221 ! immune system organ size trait is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0000703 name: thymus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the primary lymphoid organ that is required for maturation of T cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10367900] synonym: "thymic morphology trait" EXACT [] synonym: "thymus structure" EXACT [] is_a: VT:0002722 ! immune system organ morphology trait is_a: VT:0010250 ! hematopoietic system morphology trait [Term] id: VT:0000704 name: thymus development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the primary lymphoid organ that is required for maturation of T cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "development trait of the thymus" EXACT [] is_a: VT:0002450 ! immune system organ development trait is_a: VT:0010255 ! hematopoietic system development trait [Term] id: VT:0000712 name: vestibular hair cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the hair cells in the sensory epithelium of the maculae and cristae of the membranous labyrinth of the inner ear." [MP:0004588] is_a: VT:0003938 ! ear development trait [Term] id: VT:0000713 name: Reichert's cartilage development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cartilage found in the mesenchyme of the second pharyngeal arch in the embryo from which develop the stapes, styloid process, lesser horn and upper part of the body of the hyoid bone; its proximal end gives rise to the stylohyoid ligament." [MP:0004915] is_a: VT:0015047 ! head development trait [Term] id: VT:0000715 name: thymocyte quantity namespace: Trait.ontology def: "The proportion or number of immature T cells located in the thymus." [RGD:MS] synonym: "thymocyte number" EXACT [] is_a: VT:0000703 ! thymus morphology trait is_a: VT:0006387 ! T cell quantity [Term] id: VT:0000716 name: immune system cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "immune cell morphology trait" EXACT [] is_a: VT:0000685 ! immune system morphology trait [Term] id: VT:0000717 name: lymphocyte quantity namespace: Trait.ontology def: "The proportion or number of the cells involved in adaptive immune reactions of the body, including B cells, T cells and natural killer cells." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "immune cell number" BROAD [] synonym: "lymphocyte cell number" EXACT [] synonym: "lymphocyte number" EXACT [] is_a: VT:0000217 ! leukocyte quantity is_a: VT:0002619 ! lymphocyte morphology trait [Term] id: VT:0000729 name: skeletal myogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to embryonic formation or differentiation of skeletal muscle cells or fibers." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000733 ! muscular system development trait [Term] id: VT:0000733 name: muscular system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] xref: ATOL:0000318 is_a: VT:0005369 ! muscular system trait [Term] id: VT:0000736 name: skeletal myogenesis initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of formation and/or differentiation of skeletal muscle." [PMID:7926784] synonym: "onset of muscle development trait" RELATED [] synonym: "onset of skeletal myogenesis" EXACT [] xref: ATOL:0000319 is_a: VT:0000729 ! skeletal myogenesis trait [Term] id: VT:0000737 name: myotome development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the part of the somite that develops into the skeletal musculature." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7588068] xref: ATOL:0000320 is_a: VT:0000729 ! skeletal myogenesis trait [Term] id: VT:0000740 name: smooth muscle contractility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the unstriated, involuntary muscle tissue of the internal organs, blood vessels, hair follicles, etc. to shorten or to develop increased tension." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010111 ! smooth muscle physiology trait [Term] id: VT:0000741 name: detrusor smooth muscle contractility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the non-striated, involuntary muscle tissue surrounding the urinary bladder to shorten or to develop increased tension." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000740 ! smooth muscle contractility trait [Term] id: VT:0000742 name: ileal smooth muscle contractility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the non-striated, involuntary muscle tissue of the portion of the small intestine that extends from the jejunum to the colon to shorten or to develop increased tension." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0004005 ! intestinal smooth muscle contractility trait [Term] id: VT:0000759 name: skeletal muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002108 ! muscular system morphology trait [Term] id: VT:0000761 name: diaphragm thickness namespace: Trait.ontology def: "The distance between the surfaces of the thin musculomebranous barrier that separates the abdominal and thoracic cavities." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "diaphragm muscle thickness" EXACT [] is_a: VT:0010115 ! diaphragm size trait [Term] id: VT:0000762 name: tongue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mobile mass of muscular tissue and surrounding epithelial tissue occupying the cavity of the mouth and forming part of the floor." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000462 ! gastrointestinal system morphology trait [Term] id: VT:0000763 name: filiform papillae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the keratinized projections on the dorsal surface of the tongue." [PMID:9420327] is_a: VT:0000764 ! tongue epithelium morphology trait [Term] id: VT:0000764 name: tongue epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the epithelial layer of the tongue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000762 ! tongue morphology trait [Term] id: VT:0000765 name: tongue squamous epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the scaly epithelial layer of the tongue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000764 ! tongue epithelium morphology trait [Term] id: VT:0000767 name: smooth muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the unstriated, involuntary muscle tissue of the internal organs, blood vessels, and other body structures not under willful control." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002108 ! muscular system morphology trait [Term] id: VT:0000768 name: common crus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the united, nonampullary ends of the superior and posterior semicircular ducts of the inner ear." [MP:0004922] is_a: VT:0002428 ! semicircular canal morphology trait [Term] id: VT:0000771 name: brain size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the brain." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0000776 name: inferior colliculus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired inferior eminence of the mesencephalic tectum that is involved in preliminary visual processing, and control of eye movements." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000776] is_a: VT:0000899 ! corpora quadrigemina morphology trait [Term] id: VT:0000777 name: inferior colliculus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the paired inferior eminence of the mesencephalic tectum that is involved in preliminary visual processing, and control of eye movements." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000776] is_a: VT:0000776 ! inferior colliculus morphology trait is_a: VT:0000900 ! corpora quadrigemina size trait [Term] id: VT:0000778 name: nervous system tract morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the bundles of myelinated nerve fibers following a defined path through the brain and/or spinal cord." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0000779 name: cochlea basement membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes." [MP:0004598] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0000780 name: corpus callosum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres; it consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000780] is_a: VT:0002199 ! brain commissure morphology trait is_a: VT:0015105 ! cerebrum morphology trait [Term] id: VT:0000781 name: corpus callosum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the commissural plate interconnecting the cortical hemispheres of the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000780] is_a: VT:0000780 ! corpus callosum morphology trait [Term] id: VT:0000783 name: forebrain morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube from which the diencephalon and telencephalon are derived." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000783] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0000784 name: forebrain cell quantity namespace: Trait.ontology def: "The proportion or numbers of cells in the anterior primitive cerebral vesicle; most rostral of three primary vesicles of the embryonic neural tube." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000783] synonym: "forebrain cell number" EXACT [] is_a: VT:0000783 ! forebrain morphology trait [Term] id: VT:0000785 name: telencephalon cell quantity namespace: Trait.ontology def: "The proportion or number of cells in cerebral cortex and basal ganglia." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cerebrum cell number" EXACT [] is_a: VT:0000787 ! telencephalon morphology trait [Term] id: VT:0000786 name: neuroepithelial layer differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which relatively unspecialized cells acquire the specialized features of the epithelial cell layer that lines the neural tube and develops into the nervous system and neural crest cells." [MP:0000786, PMID:9362461] is_a: VT:0000913 ! brain development trait is_a: VT:0004261 ! embryonic neuroepithelium morphology trait [Term] id: VT:0000787 name: telencephalon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired anteriolateral division of the prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000787] is_a: VT:0000783 ! forebrain morphology trait [Term] id: VT:0000788 name: cerebral cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the grey matter on the surface of the cerebral hemisphere that develops from the telencephalon and folds into gyri; it is responsible for intellectual faculties and higher mental functions." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000788] synonym: "pallium morphology trait" RELATED [] is_a: VT:0015105 ! cerebrum morphology trait [Term] id: VT:0000789 name: cerebral cortex thickness namespace: Trait.ontology def: "The distance between the surfaces of the mantle covering the surface of the cerebral hemispheres." [MP:0000789] synonym: "neocortex thickness" EXACT [] is_a: VT:0000788 ! cerebral cortex morphology trait [Term] id: VT:0000791 name: cerebral cortex layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the layers of the gray cellular mantle covering the surface of the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000788 ! cerebral cortex morphology trait [Term] id: VT:0000792 name: cortical marginal zone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the developing superficial cortical layer located just under the pia matter." [MP:0000792] is_a: VT:0000934 ! telencephalon development trait [Term] id: VT:0000794 name: parietal lobe morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the upper central part of the cerebral hemisphere." [MP:0000794] is_a: VT:0015105 ! cerebrum morphology trait [Term] id: VT:0000795 name: postcentral gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the parietal lobe that receives general sensation from the body." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000794 ! parietal lobe morphology trait [Term] id: VT:0000796 name: sensory dissociation area morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the parietal lobe that integrates tactile and visual stimuli." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000794 ! parietal lobe morphology trait [Term] id: VT:0000797 name: supramarginal gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the frontal lobe that is involved in perception based on sensory stimuli." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000794 ! parietal lobe morphology trait [Term] id: VT:0000798 name: frontal lobe morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anterior part of the cerebral hemisphere." [MP:0000798] is_a: VT:0015105 ! cerebrum morphology trait [Term] id: VT:0000799 name: precentral gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the frontal lobe that contains the cell bodies of the primary motor pathways." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "primary motor area morphology trait" EXACT [] is_a: VT:0000798 ! frontal lobe morphology trait [Term] id: VT:0000800 name: prefrontal gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the frontal lobe that is involved with integration of voluntary movements and with speech." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "supplementary motor/speech area morphology trait" EXACT [] is_a: VT:0000798 ! frontal lobe morphology trait [Term] id: VT:0000801 name: temporal lobe morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lower lateral part of the cerebral hemisphere." [MP:0000801] is_a: VT:0015105 ! cerebrum morphology trait [Term] id: VT:0000802 name: superior temporal gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the longitudinal ridge on the lateral surface of the temporal lobe." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000801 ! temporal lobe morphology trait [Term] id: VT:0000803 name: transverse gyrus of Heschl morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the area of the temporal lobe concerned with hearing." [MP:0000803] synonym: "primary auditory area morphology trait" EXACT [] is_a: VT:0015035 ! auditory cortex morphology trait [Term] id: VT:0000804 name: occipital lobe morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the posterior part of the cerebral hemisphere." [MP:0000804] is_a: VT:0015105 ! cerebrum morphology trait [Term] id: VT:0000805 name: visual cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the occipital cortex concerned with vision." [MP:0000805] synonym: "striate cortex morphology trait" EXACT [] is_a: VT:0000804 ! occipital lobe morphology trait [Term] id: VT:0000807 name: hippocampus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the deep lying structure of the cerebrum involved with memory storage and spatial navigation." [ISBN:0-12-402035-6 "Kaufman, MH The Atlas of Mouse Development", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000787 ! telencephalon morphology trait is_a: VT:0000801 ! temporal lobe morphology trait is_a: VT:0004166 ! limbic system morphology trait [Term] id: VT:0000808 name: hippocampus development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the deep lying structure of the cerebrum involved with memory storage and spatial navigation." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "hippocampal development trait" EXACT [] is_a: VT:0000913 ! brain development trait [Term] id: VT:0000812 name: dentate gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one of two interlocking gyri of the hippocampus that contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000807 ! hippocampus morphology trait [Term] id: VT:0000813 name: hippocampus layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the layers of the laminar structure of the hippocampus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "hippocampal laminar structure" EXACT [] synonym: "laminar structure" BROAD [] is_a: VT:0000807 ! hippocampus morphology trait [Term] id: VT:0000815 name: Ammon gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one or both of the two interlocking gyri of the hippocampus; a circonvolution of rhinencephalon, the grey substance of which is rich in big pyramidal neuronal cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Ammon horn morphology trait" EXACT [] synonym: "Cornu Ammonis morphology trait" EXACT [] synonym: "hippocampus proper morphology trait" EXACT [] is_a: VT:0000807 ! hippocampus morphology trait [Term] id: VT:0000816 name: cochlear hair cell stereociliary bundle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mechanosensitive hair bundles which are composed of thick long microvilli (stereocilia) and are located at the apical end of cochlear inner and outer hair cells." [MP:0004521] synonym: "cochlear hair bundle morphology trait" EXACT [] is_a: VT:0002622 ! cochlear hair cell morphology trait [Term] id: VT:0000818 name: amygdala morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the almond-shaped body of basal nuclei anterior to the inferior horn of the lateral ventricle of the brain, within the temporal lobe; this area is involved in aggression and fear responses." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D000679 "Amygdala"] is_a: VT:0004166 ! limbic system morphology trait [Term] id: VT:0000819 name: olfactory bulb morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the forebrain region that coordinates neuronal signaling involved in the perception of smell; it receives input from the sensory neurons and outputs to the olfactory cortex." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0005235 ! olfactory lobe morphology trait [Term] id: VT:0000820 name: choroid plexus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fringe of the tela choroidea of the cerebral ventricles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000820] is_a: VT:0002200 ! brain ventricle/choroid plexus morphology trait [Term] id: VT:0000821 name: choroid plexus cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the tela choroidea of the cerebral ventricles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000820] synonym: "choroid plexus cell number" EXACT [] is_a: VT:0000820 ! choroid plexus morphology trait [Term] id: VT:0000822 name: brain ventricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cavities of the brain filled with cerebrospinal fluid." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002200 ! brain ventricle/choroid plexus morphology trait [Term] id: VT:0000823 name: lateral ventricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube; they are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle." [MP:0000823] is_a: VT:0000787 ! telencephalon morphology trait is_a: VT:0000822 ! brain ventricle morphology trait [Term] id: VT:0000825 name: lateral ventricle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the horseshoe-shaped cavities of the cerebrum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000823] synonym: "ventricle of cerebral hemisphere size trait" EXACT [] synonym: "ventriculus lateralis size trait" EXACT [] is_a: VT:0000823 ! lateral ventricle morphology trait [Term] id: VT:0000826 name: third ventricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami; its floor is formed by the hypothalamus, its anterior wall by the lamina terminalis, and its roof by ependyma; it communicates with the fourth ventricle by the cerebral aqueduct, and with the lateral ventricles by the interventricular foramina." [MP:0000826] is_a: VT:0000822 ! brain ventricle morphology trait is_a: VT:0000830 ! diencephalon morphology trait [Term] id: VT:0000827 name: third ventricle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami; its floor is formed by the hypothalamus, its anterior wall by the lamina terminalis, and its roof by ependyma; it communicates with the fourth ventricle by the cerebral aqueduct, and with the lateral ventricles by the interventricular foramina." [MP:0000826] synonym: "ventricle of diencephalon size trait" EXACT [] synonym: "ventriculus tertius size trait" EXACT [] is_a: VT:0000826 ! third ventricle morphology trait [Term] id: VT:0000828 name: fourth ventricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind; it is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space." [MP:0000828] synonym: "ventricle of rhombencephalon morphology trait" EXACT [] synonym: "ventriculus quartus morphology trait" EXACT [] is_a: VT:0000822 ! brain ventricle morphology trait is_a: VT:0000841 ! hindbrain morphology trait [Term] id: VT:0000829 name: fourth ventricle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind; it is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space." [MP:0000828] synonym: "ventricle of rhombencephalon size trait" EXACT [] synonym: "ventriculus quartus size trait" EXACT [] is_a: VT:0000828 ! fourth ventricle morphology trait [Term] id: VT:0000830 name: diencephalon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived; these regions regulate autonomic, visceral and endocrine function, and process information directed to the cerebral cortex." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0000783 ! forebrain morphology trait [Term] id: VT:0000831 name: diencephalon cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the paired caudal parts of the prosencephalon from which the thalamus, hypothalamus, epithalamus and subthalamus are derived" [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "diencephalon cell number" EXACT [] is_a: VT:0000830 ! diencephalon morphology trait [Term] id: VT:0000832 name: thalamus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large ovoid mass of paired bodies containing mostly gray matter and forming part of the lateral wall of the third ventricle of the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000832] is_a: VT:0000830 ! diencephalon morphology trait [Term] id: VT:0000833 name: thalamus cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the large ovoid mass of paired bodies containing mostly grey matter and forming part of the lateral wall of the third ventricle of the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000832] synonym: "thalamus cell number" EXACT [] is_a: VT:0000832 ! thalamus morphology trait [Term] id: VT:0000834 name: subthalamus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000834] synonym: "ventral thalamus morphology trait" EXACT [] is_a: VT:0000830 ! diencephalon morphology trait [Term] id: VT:0000835 name: subthalamic nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000835] synonym: "corpus luysi morphology trait" EXACT [] is_a: VT:0000834 ! subthalamus morphology trait is_a: VT:0006007 ! basal ganglion morphology trait [Term] id: VT:0000836 name: substantia nigra morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the layer of grey substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000836] synonym: "locus niger morphology trait" EXACT [] synonym: "nucleus niger morphology trait" EXACT [] is_a: VT:0000897 ! midbrain morphology trait is_a: VT:0006007 ! basal ganglion morphology trait [Term] id: VT:0000837 name: hypothalamus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle; this region regulates the autonomic nervous system via hormone production and release." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000837] is_a: VT:0000830 ! diencephalon morphology trait is_a: VT:0004166 ! limbic system morphology trait [Term] id: VT:0000838 name: cochlear hair cell inter-stereocilial links trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, or pattern of the morphologically and biochemically distinct link types that extend between the stereocilia of cochlear hair bundles; link types can be distinguished by their relative sensitivities to treatment with calcium chelators and the protease subtilisin." [MP:0004577] comment: in the mature mouse cochlea, tip links and horizontal top connectors are the only inter-stereocilial links associated with the hair bundle; ankle links and transient lateral links are both prominent features of developing auditory hair bundles is_a: VT:0000816 ! cochlear hair cell stereociliary bundle morphology trait [Term] id: VT:0000839 name: hypothalamus cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the ventral part of the diencephalon extending from the region of the optic chiasm to the caudal border of the mammillary bodies and forming the inferior and lateral walls of the third ventricle; this region regulates the autonomic nervous system via hormone production and release." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000837] synonym: "hypothalamus cell number" EXACT [] is_a: VT:0000837 ! hypothalamus morphology trait [Term] id: VT:0000840 name: epithalamus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000840] is_a: VT:0000830 ! diencephalon morphology trait [Term] id: VT:0000841 name: hindbrain morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the caudal region of the brain; includes cerebellum, pons and medulla oblongata." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9362461] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0000842 name: superior olivary complex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nucleus of neurons on the dorsal part of the lateral surface of the pons; it normally receives projection fibers from the cochlear nuclei and is prominently involved in spatial localization of sound." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000848 ! pons morphology trait [Term] id: VT:0000843 name: facial nuclei cell quantity namespace: Trait.ontology def: "The proportion or number of neurons in the group of motor neurons in the hindbrain; receives fibers from the facial muscles, stapedus muscle and stylohyoid muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "facial nuclei cell number" EXACT [] is_a: VT:0000909 ! facial motor nucleus morphology trait [Term] id: VT:0000844 name: pontine flexure morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bend in the developing neural tube that produces a thinning of the roof of the pons and medulla oblongata and defines the boundary between the metencephalon and medulla oblongata in the embryo." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000913 ! brain development trait [Term] id: VT:0000846 name: medulla oblongata morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the most caudal region of the brainstem that lies directly rostral to the spinal cord; includes regions responsible for autonomic functions such as digestion, breathing and control of heart rate." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "myelencephalon morphology trait" EXACT [] is_a: VT:0000841 ! hindbrain morphology trait [Term] id: VT:0000847 name: metencephalon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anterior part of the rhombencephalon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000841 ! hindbrain morphology trait [Term] id: VT:0000848 name: pons morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the band of nerve fibers in the brain connecting the medulla oblongata and the mesencephalon; this region conveys information about movement from the cerebral hemisphere to the cerebellum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0000841 ! hindbrain morphology trait [Term] id: VT:0000849 name: cerebellum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the part of the metencephalon that lies in the posterior cranial fossa dorsal to the pons and medulla that is concerned with the coordination of movement and learning of motor skills." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "cerebellar hemispheres morphology trait" EXACT [] is_a: VT:0000847 ! metencephalon morphology trait [Term] id: VT:0000851 name: cerebellum cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the part of the metencephalon that lies in the posterior cranial fossa dorsal to the pons and medulla that is concerned with the coordination of movement and learning of motor skills." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "cerebellum cell number" EXACT [] is_a: VT:0000849 ! cerebellum morphology trait [Term] id: VT:0000852 name: cerebellum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cerebellum." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000849 ! cerebellum morphology trait [Term] id: VT:0000854 name: cerebellum development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the part of the metencephalon that lies dorsal to the pons and medulla behind the brain stem and controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000854] xref: GO:0021549 "cerebellum development" is_a: VT:0006108 ! hindbrain development trait [Term] id: VT:0000855 name: interlobular fissure development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the major fissures of the cerebellum." [PMID:10431235] synonym: "interlobular fissure formation" EXACT [] is_a: VT:0000854 ! cerebellum development trait [Term] id: VT:0000856 name: cerebellum plate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium." [PMID:9362461] is_a: VT:0000854 ! cerebellum development trait [Term] id: VT:0000857 name: cerebellum foliation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of small offshoots of the cerebellar lobules." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "cerebellar foliation" RELATED [] is_a: VT:0000854 ! cerebellum development trait [Term] id: VT:0000859 name: somatosensory cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the parietal lobe that lies posterior to the central sulcus and is concerned with receiving and processing general sensations from the body surface." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000859] is_a: VT:0000788 ! cerebral cortex morphology trait is_a: VT:0000794 ! parietal lobe morphology trait [Term] id: VT:0000860 name: primary somatosensory cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the postcentral gyrus and central sulcus that is involved in somatic sensation." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0000860] is_a: VT:0000859 ! somatosensory cortex morphology trait [Term] id: VT:0000861 name: barrel cortex organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the discrete functional units of the somatosensory cortex that processes tactile information derived from the vibrissae." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0003989] is_a: VT:0003989 ! barrel cortex morphology trait [Term] id: VT:0000863 name: secondary somatosensory cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the area of the upper bank of the lateral sulcus that is involved in somatic sensation." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0000863] is_a: VT:0000859 ! somatosensory cortex morphology trait [Term] id: VT:0000864 name: cerebellum vermis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the narrow medial zone between the two hemispheres of the cerebellum that is delimited by two longitudinal furrows; it may be continuous with the cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissures in others (e.g., ventrally); it receives inputs from the spinocerebellar tracts which carry to the vermis information on the position and balance of the torso, and it sends projections to the fastigial nucleus of the cerebellum, which then sends output to the vestibular nuclei." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cerebellar vermis morphology trait" EXACT [] synonym: "spinocerebellum morphology trait vermis part" EXACT [] synonym: "vermis morphology trait" RELATED [] is_a: VT:0004097 ! cerebellar cortex morphology trait [Term] id: VT:0000865 name: cerebellum vermis size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the narrow middle zone between the two hemispheres of the cerebellum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000864 ! cerebellum vermis morphology trait [Term] id: VT:0000866 name: cerebellum vermis cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the narrow medial zone between the two hemispheres of the cerebellum that is delimited by two longitudinal furrows; it may be continuous with the cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissures in others (e.g., ventrally); it receives inputs from the spinocerebellar tracts which carry to the vermis information on the position and balance of the torso, and it sends projections to the fastigial nucleus of the cerebellum, which then sends output to the vestibular nuclei." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cerebellum vermis cell number" EXACT [] is_a: VT:0000864 ! cerebellum vermis morphology trait [Term] id: VT:0000867 name: cerebellum anterior vermis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cerebellar anterior vermis morphology trait" EXACT [] synonym: "rostral vermis morphology trait" EXACT [] is_a: VT:0000864 ! cerebellum vermis morphology trait [Term] id: VT:0000868 name: cerebellum anterior vermis size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the narrow middle zone between the two hemispheres of the cerebellum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000867 ! cerebellum anterior vermis morphology trait [Term] id: VT:0000869 name: cerebellum posterior vermis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the posterior portion of the narrow middle zone between the two hemispheres of the cerebellum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cerebellar posterior vermis morphology trait" EXACT [] is_a: VT:0000864 ! cerebellum vermis morphology trait [Term] id: VT:0000870 name: cerebellum vermis lobule VIII morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of part of the inferior vermis of the cerebellum (vermis lobule VIII)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cerebellar pyramid morphology trait" EXACT [] synonym: "pyramid of vermis morphology trait" EXACT [] synonym: "pyramis of cerebellum morphology trait" EXACT [] synonym: "vermal pyramis morphology trait" EXACT [] is_a: VT:0015085 ! cerebellum vermis lobule morphology trait [Term] id: VT:0000871 name: cerebellum vermis lobule IX morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the triangular elevation on the vermis of the cerebellum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "vermal uvula morphology trait" EXACT [] is_a: VT:0015085 ! cerebellum vermis lobule morphology trait [Term] id: VT:0000872 name: external granule cell layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the transient layer of the cerebellar cortex which is composed of the dividing and migrating granule cells." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "EGL morphology trait" EXACT [] synonym: "External Germinal Layer morphology trait" EXACT [] is_a: VT:0000854 ! cerebellum development trait [Term] id: VT:0000873 name: external granule cell layer thickness namespace: Trait.ontology def: "The distance between the surfaces of the transient layer of the cerebellar cortex which is composed of dividing and migrating granule cells." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "EGL thickness" EXACT [] synonym: "External Germinal Layer thickness" EXACT [] is_a: VT:0000872 ! external granule cell layer morphology trait [Term] id: VT:0000875 name: cerebellar Purkinje cell layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cell layer that lies just underneath the molecular layer of the cerebellar cortex; it contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer, and candelabrum interneurons are vertically oriented between the Purkinje cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0004097 ! cerebellar cortex morphology trait [Term] id: VT:0000877 name: Purkinje cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons located at the interface of the molecular and internal granule layers of the cerebellar cortex; these inhibitory neurons provide the output of the cerebellar cortex through axons that project into the white matter, and extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "Purkinje neuron morphology trait" EXACT [] is_a: VT:0000875 ! cerebellar Purkinje cell layer morphology trait is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0000878 name: Purkinje cell quanitity namespace: Trait.ontology def: "The proportion or number of neuronal cells that are located in the interface of the molecular and granular layers of the cerebellar cortex." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "Purkinje cell number" EXACT [] is_a: VT:0000877 ! Purkinje cell morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0000881 name: cochlear hair bundle ankle links morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the long, single-stranded filaments that form a dense web or mesh around the base of cochlear hair bundles just above the region in which the stereocilia begin to taper down." [MP:0004581] comment: in the mouse, ankle links are only a transient feature of the developing cochlear hair bundles, present predominantly from P2 though P9, but are absent by P12; ankle links are disrupted by treatment of hair cells with EGTA and subtilisin but not by La^3+ and elastase is_a: VT:0000838 ! cochlear hair cell inter-stereocilial links trait [Term] id: VT:0000882 name: cochlear hair bundle horizontal top connectors morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the inter-stereocilial links that connect the top of a shorter stereocilium to an adjacent longer stereocilium at a short distance below the tip links; the appearance of horizontal top connectors, which persist into adulthood, occurs concomitant with this loss of ankle links; top connectors are essentially unaffected by treatment with subtilisin and EGTA." [MP:0004579] is_a: VT:0000838 ! cochlear hair cell inter-stereocilial links trait [Term] id: VT:0000883 name: cochlear hair bundle tip links morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the single, three-stranded inter-row filaments that extend obliquely from the tip of one stereocilium to the lateral side of an adjacent taller stereocilium; in the mouse, tip links are already detectable at E17 and persist throughout life; tips links are thought to gate the mechanotransducer channel, are lost from the cell surface after exposure to either calcium chelator BAPTA or lanthanum, and resist degradation by the protease subtilisin." [MP:0004578] is_a: VT:0000838 ! cochlear hair cell inter-stereocilial links trait [Term] id: VT:0000884 name: Purkinje cell layer lamination integrity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the structural soundness of the layer of large neuron cell bodies between the molecular and granular layers of the cerebellum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10742104] is_a: VT:0000875 ! cerebellar Purkinje cell layer morphology trait [Term] id: VT:0000886 name: cerebellar granule layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the innermost cortical layer of the cerebellum; contains densely packed small neurons, mostly granule cells with some Golgi cells are found at the outer border." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "granule layer morphology trait" EXACT [] synonym: "IGL morphology trait" EXACT [] synonym: "internal granule layer morphology trait" EXACT [] is_a: VT:0004097 ! cerebellar cortex morphology trait [Term] id: VT:0000887 name: granule layer lamination integrity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the structural soundness of the deepest of the three layers of the cerebellum that contains granule cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000886 ! cerebellar granule layer morphology trait [Term] id: VT:0000889 name: cerebellar molecular layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outermost layer of the cerebral cortex that contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0004097 ! cerebellar cortex morphology trait [Term] id: VT:0000890 name: cerebellar molecular layer thickness namespace: Trait.ontology def: "The distance between the surfaces of the outer of the three cortical layers of the cerebellum." [RGD:MS] is_a: VT:0000889 ! cerebellar molecular layer morphology trait [Term] id: VT:0000892 name: cochlear hair cell stereociliary bundle orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of inner and/or outer hair cell stereociliary bundles in relation to the hair cells." [MP:0004522] is_a: VT:0000816 ! cochlear hair cell stereociliary bundle morphology trait [Term] id: VT:0000893 name: cochlear hair cell stereocilia quantity namespace: Trait.ontology def: "The proportion or number of the nonmotile, actin-filled specialized microvilli (stereocilia) normally arrayed on the sensory epithelial cells of the cochlea, which are normally in synaptic contact with the auditory nerve." [MP:0004523] synonym: "cochlear hair cell stereocilia number" EXACT [] is_a: VT:0000816 ! cochlear hair cell stereociliary bundle morphology trait [Term] id: VT:0000894 name: cochlear hair cell stereocilia size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nonmotile, actin-filled specialized microvilli (stereocilia) which are normally arrayed on cochlear inner and outer hair cells." [MP:0004524] is_a: VT:0000816 ! cochlear hair cell stereociliary bundle morphology trait [Term] id: VT:0000895 name: cochlear inner hair cell afferent innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of afferent terminals and/or their synapses in the cochlear IHC region.\nconsider: VT:0010155, VT:0010185" [MGI:MP "Definition from the Mammalian Phenotype ontology"] synonym: "cochlear IHC afferent innervation" EXACT [] is_obsolete: true [Term] id: VT:0000896 name: cochlear inner hair cell efferent innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to the normally dense plexus of efferent terminals that contact radial fibers of the spiral ganglion below cochlear IHCs or of the sparser plexus of terminals positioned around IHC somata; normally, lateral olivocochlear neurons, which are found in and/or around the lateral superior olive, project mainly to the ipsilateral cochlea and terminate mostly on dendritic fibers below IHCs.\nconsider: VT:0010157, VT:0010186" [MGI:MP "Definition from the Mammalian Phenotype ontology"] synonym: "cochlear IHC efferent innervation" EXACT [] is_obsolete: true [Term] id: VT:0000897 name: midbrain morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the middle of the three cerebral vesicles of the embryo; this region controls sensory and motor functions, including eye movement and coordination of auditory and visual reflexes." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "mesencephalon morphology trait" EXACT [] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0000898 name: midbrain cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the middle of the three cerebral vesicles of the embryo." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "midbrain cell number" EXACT [] is_a: VT:0000897 ! midbrain morphology trait [Term] id: VT:0000899 name: corpora quadrigemina morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the inferior and/or superior colliculus." [MP:0000899] synonym: "colliculi morphology trait" EXACT [] synonym: "colliculus morphology trait" EXACT [] synonym: "quadrigeminal body morphology trait" EXACT [] is_a: VT:0006104 ! tectum morphology trait [Term] id: VT:0000900 name: corpora quadrigemina size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the inferior and/or superior colliculus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "colliculi size trait" EXACT [] synonym: "colliculus size trait" EXACT [] is_a: VT:0000899 ! corpora quadrigemina morphology trait is_a: VT:0006105 ! tectum size trait [Term] id: VT:0000901 name: corpora quadrigemina organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the inferior and/or superior colliculus." [MP:0000089] synonym: "colliculus position" EXACT [] is_a: VT:0000899 ! corpora quadrigemina morphology trait [Term] id: VT:0000904 name: superior colliculus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired superior eminence of the mesencephalic tectum that is involved in auditory processing." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000899 ! corpora quadrigemina morphology trait [Term] id: VT:0000905 name: superior colliculus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the paired superior eminence of the mesencephalic tectum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000900 ! corpora quadrigemina size trait is_a: VT:0000904 ! superior colliculus morphology trait [Term] id: VT:0000906 name: trigeminal V mesencephalic nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of sensory neurons residing in a long, narrow plate in the midbrain; axons pass with the trigeminal nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "mesencephalic trigeminal nucleus morphology trait" EXACT [] is_a: VT:0000897 ! midbrain morphology trait [Term] id: VT:0000907 name: trigeminal V mesencephalic nucleus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of sensory neurons residing in a long, narrow plate in the midbrain; axons pass with the trigeminal nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "mesencephalic trigeminal nucleus size trait" EXACT [] is_a: VT:0000906 ! trigeminal V mesencephalic nucleus morphology trait [Term] id: VT:0000909 name: facial motor nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of motor neurons residing in the pons that innervate the muscles of facial expression." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0000848 ! pons morphology trait [Term] id: VT:0000910 name: facial motor nucleus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of motor neurons residing in the pons that innervate the muscles of facial expression." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0000909 ! facial motor nucleus morphology trait [Term] id: VT:0000911 name: trigeminal motor nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of motor neurons innervating the muscles of mastication." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000848 ! pons morphology trait [Term] id: VT:0000912 name: trigeminal motor nucleus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of motor neurons innervating the muscles of mastication." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000911 ! trigeminal motor nucleus morphology trait [Term] id: VT:0000913 name: brain development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the brain during its formation and differentiation." [VTO:CP "Cari Park, Iowa State University Curator"] xref: GO:0007420 "brain development" is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0000920 name: myelination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of an axon acquiring a sheath made of a fat-like substance." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:cur "Rat Genome Database submission"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0000923 name: roof plate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a transient group of neuroepithelial cells located at the dorsal midline of the neural tube that profoundly influences the development of the vertebrate central nervous system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002151 ! neural tube morphology/development trait [Term] id: VT:0000925 name: floor plate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a transient group of neuroepithelial cells located at the ventral midline of the neural tube that profoundly influences the development of the vertebrate central nervous system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002151 ! neural tube morphology/development trait [Term] id: VT:0000927 name: floor plate size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the floor plate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000925 ! floor plate morphology trait [Term] id: VT:0000933 name: rhombomere morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the transverse segments in the hindbrain region of the developing neural tube." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003208 ! neuromere morphology trait is_a: VT:0006108 ! hindbrain development trait [Term] id: VT:0000934 name: telencephalon development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the anterior division of the embryonic prosencephalon during its formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: GO:0021537 "telencephalon development" is_a: VT:0003232 ! forebrain development trait [Term] id: VT:0000935 name: telencephalic vesicle development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the stereotypic invaginations forming the paired diverticula of the telencephalon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000934 ! telencephalon development trait [Term] id: VT:0000936 name: telencephalic vesicle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the paired diverticula of the telencephalon, from which the forebrain develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000934 ! telencephalon development trait [Term] id: VT:0000937 name: motor neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells that innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000955 ! spinal cord morphology trait is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0000939 name: motor neuron quantity namespace: Trait.ontology def: "The proportion or number of cells that innervate an effector (muscle or glandular) tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "motor neuron number" EXACT [] is_a: VT:0000937 ! motor neuron morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0000940 name: motor neuron innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of the nerve fibers of motor axons to an effector tissue.\nconsider: VT:0010286, VT:0010289" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_obsolete: true [Term] id: VT:0000941 name: motor neuron target finding trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of innervating neurons to stop at target site and form terminal arbors." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0000942 name: motor neuron axon outgrowth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the projection of innervating motor neurons to endplate targets." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0000944 name: cochlear outer hair cell afferent innervation morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the afferent terminals and/or their synapses in the cochlear OHC region." [MP:0004747] synonym: "cochlear outer hair cell afferent innervation" EXACT [] is_a: VT:0004399 ! cochlear outer hair cell morphology trait [Term] id: VT:0000952 name: central nervous system glial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the non-neuronal cells of the central nervous system that form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons." [MP:0000952] synonym: "central nervous system glia morphology trait" EXACT [] synonym: "CNS glia morphology trait" EXACT [] is_a: VT:0003634 ! glial cell morphology trait [Term] id: VT:0000953 name: oligodendrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neuroglia of the central nervous system that form the insulating myelin sheath of axons." [MP:0000953] synonym: "oligoglia morphology trait" EXACT [] is_a: VT:0000952 ! central nervous system glial cell morphology trait [Term] id: VT:0000954 name: oligodendrocyte progenitor quantity namespace: Trait.ontology def: "The proportion or number of cells that differentiate into the neuroglia of the central nervous system that form the insulating myelin sheath of axons." [MP:0000953] is_a: VT:0000953 ! oligodendrocyte morphology trait [Term] id: VT:0000955 name: spinal cord morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cylindrical tissue of the vertebral canal that extends from the medulla oblongata to the conus medullaris." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0000959 name: somatic sensory system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the neural tissue involved in the transmission of sensory signals." [MP:0000959] is_a: VT:0002752 ! somatic nervous system morphology trait [Term] id: VT:0000960 name: sensory ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons, and non-neuonal supporting cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000960] synonym: "sensory ganglia morphology trait" EXACT [] is_a: VT:0000959 ! somatic sensory system morphology trait [Term] id: VT:0000961 name: dorsal root ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the group of nerve cell bodies of each segmental nerve projecting from the spinal cord." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "dorsal root ganglia morphology trait" EXACT [] is_a: VT:0000960 ! sensory ganglion morphology trait [Term] id: VT:0000962 name: dorsal root ganglion organization trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the segmentation pattern of one or more dorsal root ganglia." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_obsolete: true [Term] id: VT:0000964 name: dorsal root ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of one or more of the dorsal root ganglia." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000961 ! dorsal root ganglion morphology trait [Term] id: VT:0000965 name: sensory neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells that innervate an effector (muscle or glandular) tissue and are responsible for transmission of sensory impulses." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000959 ! somatic sensory system morphology trait is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0000968 name: sensory neuron innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to sensory termini or to the spinal cord." [MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0000969 name: nociceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the peripheral receptors for pain, including receptors sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli." [MP:0000969] is_a: VT:0000965 ! sensory neuron morphology trait is_a: VT:0015098 ! nociception system morphology trait [Term] id: VT:0000970 name: polymodal receptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of a sensory receptor that may be stimulated by mechanical, thermal or chemical means." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0000965 ! sensory neuron morphology trait [Term] id: VT:0000971 name: thermoreceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the cellular receptors that mediate the sense of temperature; in vertebrates, these are most often located under the skin." [MP:0000971] synonym: "thermal receptor morphology trait" EXACT [] is_a: VT:0000965 ! sensory neuron morphology trait [Term] id: VT:0000972 name: mechanoreceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the receptors of the body, usually nerve termini, that respond to mechanical pressure or distortion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000965 ! sensory neuron morphology trait is_a: VT:0015099 ! touch perception trait [Term] id: VT:0000973 name: cutaneous/subcutaneous mechanoreceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the receptors that respond to mechanical pressure or distortion in the skin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000972 ! mechanoreceptor morphology trait [Term] id: VT:0000974 name: hair guard neuron morphology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the shape, structure, color, or pattern of the subcutaneous mechanoreceptors that innervate guard hairs." [MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0000976 name: hair guard cell innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to the hair guard cells." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_obsolete: true [Term] id: VT:0000977 name: hair-tylotrich neuron morphology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the shape, structure, color, or pattern of the subcutaneous mechanoreceptors that innervate tylotrich hair follicles." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "hair tylotrich neuron morphology trait" EXACT [] is_obsolete: true [Term] id: VT:0000978 name: hair-tylotrich cell innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to hair tylotrich cells." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "hair tylotrich cell innervation pattern" EXACT [] is_obsolete: true [Term] id: VT:0000979 name: hair-down neuron morphology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the shape, structure, color, or pattern of the subcutaneous mechanoreceptors that innervate vellus hairs." [MGI:MP "Definition from the Mammalian Phenotype ontology"] synonym: "D-hair receptor morphology trait" EXACT [] synonym: "hair down neuron morphology trait" EXACT [] is_obsolete: true [Term] id: VT:0000981 name: hair-down cell innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to hair down cells." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "D-hair receptor cell innercation pattern" EXACT [] synonym: "hair down cell innervation pattern" EXACT [] is_obsolete: true [Term] id: VT:0000982 name: Meissner's corpuscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any or all of the numerous oval bodies found in the dermal papillae of thick skin; believed to be mechanoreceptors for tactile sensation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000983] synonym: "oval corpuscle morphology trait" EXACT [] synonym: "tactile corpuscle morphology trait " EXACT [] synonym: "touch corpuscle morphology trait" EXACT [] is_a: VT:0000973 ! cutaneous/subcutaneous mechanoreceptor morphology trait [Term] id: VT:0000983 name: Meissner's corpuscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of any of the numerous oval bodies found in the dermal papillae of thick skin; believed to be mechanoreceptors for tactile sensation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000983] synonym: "oval corpuscle size trait" EXACT [] synonym: "touch corpuscle size trait" EXACT [] is_a: VT:0000982 ! Meissner's corpuscle morphology trait [Term] id: VT:0000984 name: Meissner's corpuscle innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to any part of the numerous oval bodies found in the dermal papillae of thick skin and which are believed to be mechanoreceptors for tactile sensation.\nconsider: VT:0010187, VT:0010188" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true [Term] id: VT:0000985 name: Merkel's receptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the modified epidermal cells located in the stratum basale and found mostly in areas where sensory perception is acute." [MP:0000985] is_a: VT:0000973 ! cutaneous/subcutaneous mechanoreceptor morphology trait [Term] id: VT:0000986 name: Merkel's receptor quantity namespace: Trait.ontology def: "The proportion or number of modified epidermal cells located in the stratum basale and found mostly in areas where sensory perception is acute." [MP:0000986] synonym: "Merkel's receptor number" EXACT [] is_a: VT:0000985 ! Merkel's receptor morphology trait [Term] id: VT:0000987 name: Merkel's receptor innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to the modified epidermal cells located in the stratum basale and found mostly in areas where sensory perception is acute.\nconsider: VT:0010148, VT:0010150" [MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0000988 name: Pacinian corpuscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [MP:0000988] is_a: VT:0000973 ! cutaneous/subcutaneous mechanoreceptor morphology trait [Term] id: VT:0000989 name: Ruffini's corpuscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory cells in the subcutaneous tissue of the digits specialized to transduce mechanical stimuli." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000973 ! cutaneous/subcutaneous mechanoreceptor morphology trait [Term] id: VT:0000990 name: skeletal muscle mechanoreceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the receptors that respond to mechanical pressure or distortion in any of the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "muscle/skeletal mechanoreceptor morphology trait" EXACT [] is_a: VT:0000972 ! mechanoreceptor morphology trait is_a: VT:0002108 ! muscular system morphology trait [Term] id: VT:0000991 name: primary muscle spindle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "primary neuromuscular spindle morphology trait" EXACT [] is_a: VT:0004069 ! muscle spindle morphology trait [Term] id: VT:0000992 name: primary muscle spindle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the sensory organ in muscle; involved in the stretch reflex and is sensitive to stretch velocity." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "primary neuromuscular spindle size trait" EXACT [] is_a: VT:0000991 ! primary muscle spindle morphology trait [Term] id: VT:0000994 name: secondary muscle spindle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity." [ISBN:0-471-31639-3 "Crawley, JN. What's wrong with my mouse?"] synonym: "secondary neuromuscular spindle morphology trait" EXACT [] is_a: VT:0004069 ! muscle spindle morphology trait [Term] id: VT:0000995 name: secondary muscle spindle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the sensory organ in muscle; involved in the stretch reflex and is not sensitive to stretch velocity." [ISBN:0-471-31639-3 "Crawley, JN. What's wrong with my mouse?"] synonym: "secondary neuromuscular spindle size trait" EXACT [] is_a: VT:0000994 ! secondary muscle spindle morphology trait [Term] id: VT:0000997 name: joint capsule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sac that encloses the articulating ends of bones participating in a synovial joint; formed by an outer fibrous layer and an inner synovial membrane." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002932 ! joint morphology trait [Term] id: VT:0000999 name: Golgi tendon organ morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory organ in muscle that is involved in regulating muscle tension." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "Golgi organ morphology trait" EXACT [] is_a: VT:0000990 ! skeletal muscle mechanoreceptor morphology trait [Term] id: VT:0001001 name: chemoreceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the cells specialized to detect chemical substances and relay that information centrally in the nervous system." [MP:0001001] is_a: VT:0000965 ! sensory neuron morphology trait [Term] id: VT:0001002 name: taste bud morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small sensory organs located in the tongue that contain gustatory receptor cells, basal cells, and supporting cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0005500 ! gustatory system morphology trait [Term] id: VT:0001003 name: olfactory receptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the proteins, usually projecting from the cilia of olfactory receptor neurons, that specifically bind odorant molecules and trigger responses in the specialized neurons of the olfactory epithelium." [MP:0001003] synonym: "olfactory receptor protein morphology trait" EXACT [] is_a: VT:0005499 ! olfactory system morphology trait is_a: VT:0006092 ! olfactory neuron morphology trait [Term] id: VT:0001004 name: retinal photoreceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the receptors sensitive to light." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001004] is_a: VT:0000965 ! sensory neuron morphology trait is_a: VT:0003728 ! retinal photoreceptor layer morphology trait [Term] id: VT:0001005 name: retinal rod cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the photoreceptors that contain rhodopsin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001005] synonym: "rod morphology trait" EXACT [] is_a: VT:0001004 ! retinal photoreceptor morphology trait [Term] id: VT:0001006 name: retinal cone cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the retinal receptors that give rise to color vision." [MP:0001006] synonym: "cone morphology trait" EXACT [] is_a: VT:0001004 ! retinal photoreceptor morphology trait [Term] id: VT:0001007 name: sympathetic nervous system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the part of the autonomic nervous system that innervates smooth muscle, cardiac muscle and glands and mediates the body's response to stressful situations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "adrenergic system morphology trait" EXACT [] synonym: "somatic sympathetic system morphology trait" EXACT [] synonym: "thoracolumbar system morphology trait" EXACT [] is_a: VT:0002751 ! autonomic nervous system morphology trait [Term] id: VT:0001008 name: sympathetic ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the groups of neuronal cell bodies of the autonomic nervous system." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001008] synonym: "sympathetic ganglia morphology trait" EXACT [] is_a: VT:0001007 ! sympathetic nervous system morphology trait [Term] id: VT:0001009 name: paravertebral ganglion cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the group of neuronal cell bodies of the autonomic nervous system that are located at intervals along the sympathetic trunks." [RGD:MS] is_a: VT:0015050 ! paravertebral ganglion morphology trait [Term] id: VT:0001010 name: prevertebral ganglion cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the group of neuronal cell bodies of the autonomic nervous system that are located on the superior part of the abdominal aorta." [RGD:MS] synonym: "prevertebral ganglion cell number" EXACT [] is_a: VT:0015051 ! prevertebral ganglion morphology trait [Term] id: VT:0001011 name: superior cervical ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of neurons that is the largest of the sympathetic trunk; normally lies at the base of the skull and innervates the head and neck." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015050 ! paravertebral ganglion morphology trait [Term] id: VT:0001013 name: superior cervical ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of neurons that is the largest of the ganglia of the sympathetic trunk; normally lies at the base of the skull and innervates the head and neck." [MP:0001013] is_a: VT:0001011 ! superior cervical ganglion morphology trait [Term] id: VT:0001016 name: middle cervical ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small ganglion located at the level of the cricoid cartilage of the laryngeal wall." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015050 ! paravertebral ganglion morphology trait [Term] id: VT:0001017 name: stellate ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of neurons formed by the fusion of the inferior cervical and first thoracic ganglia." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cervicothoracic ganglion morphology trait" EXACT [] is_a: VT:0015050 ! paravertebral ganglion morphology trait [Term] id: VT:0001018 name: cochlear outer hair cell efferent innervation morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the efferent terminals, occurring as clusters, in the cochlear OHC region; normally, medial olivocochlear neurons, which are primarily found in rostral and ventral periolivary regions, project mainly to the contralateral cochlea, and terminate directly on OHCs." [MP:0004632] synonym: "cochlear OHC hair cell efferent innervation" EXACT [] is_a: VT:0004399 ! cochlear outer hair cell morphology trait [Term] id: VT:0001019 name: L4 dorsal root ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra." [MP:0001019] synonym: "L4 dorsal root ganglia morphology trait" RELATED [] synonym: "L4 DRG morphology trait" RELATED [] synonym: "L4 ganglion morphology trait" RELATED [] synonym: "L4 sympathetic ganglia morphology trait" RELATED [] synonym: "L4 sympathetic ganglion morphology trait" RELATED [] is_a: VT:0015054 ! lumbar dorsal root ganglion morphology trait [Term] id: VT:0001020 name: L4 ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra." [MP:0001019] is_a: VT:0000964 ! dorsal root ganglion size trait is_a: VT:0001019 ! L4 dorsal root ganglion morphology trait [Term] id: VT:0001022 name: L5 dorsal root ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra." [MP:0001022] synonym: "L5 dorsal root ganglia morphology trait" RELATED [] synonym: "L5 DRG morphology trait" RELATED [] synonym: "L5 ganglion morphology trait" RELATED [] synonym: "L5 sympathetic ganglia morphology trait" RELATED [] synonym: "L5 sympathetic ganglion morphology trait" RELATED [] is_a: VT:0015054 ! lumbar dorsal root ganglion morphology trait [Term] id: VT:0001023 name: L5 ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra." [MP:0001022] is_a: VT:0000964 ! dorsal root ganglion size trait is_a: VT:0001022 ! L5 dorsal root ganglion morphology trait [Term] id: VT:0001025 name: sympathetic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the neurons of the part of the autonomic nervous system that innervates smooth muscle, cardiac muscle and glands and mediates the body's response to stressful situations." [MP:0001025] is_a: VT:0001007 ! sympathetic nervous system morphology trait [Term] id: VT:0001026 name: adrenergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that release catecholamines at a synapse after an impulse." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0001027 name: adrenergic innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers of the autonomic nervous system that use norepinephrine as their neurotransmitter to a target tissue or cell.\nconsider: VT:0010038, VT:0010039" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true [Term] id: VT:0001028 name: cochlear outer hair cell stereociliary bundle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mechanosensitive hair bundles located at the apical end of cochlear OHCs; each hair bundle is normally composed of ~100 nonmotile, actin-filled microvilli (stereocilia) arranged in rows of increasing height and coupled to one another by morphologically distinct links: tip links, horizontal top connectors, shaft connectors, and ankle links; most hair bundles also possess a single motile kinocilium immediately adjacent to the tallest (outermost) row of stereocilia; a fifth link type, the kinocilial link, connects the kinocilium to its neighboring stereocilia." [MP:0004527] is_a: VT:0000816 ! cochlear hair cell stereociliary bundle morphology trait is_a: VT:0004399 ! cochlear outer hair cell morphology trait [Term] id: VT:0001031 name: outer hair cell stereocilia quantity namespace: Trait.ontology def: "The proportion or numbers of the nonmotile, actin-filled specialized microvilli (stereocilia) normally arrayed on the outer sensory epithelial cells of the cochlea, which are normally in synaptic contact with the auditory nerve." [MP:0004529] synonym: "outer hair cell stereocilia number" EXACT [] is_a: VT:0000893 ! cochlear hair cell stereocilia quantity is_a: VT:0001028 ! cochlear outer hair cell stereociliary bundle morphology trait [Term] id: VT:0001032 name: peptidergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nerve fibers believed to release small peptides as their neurotransmitter." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001025 ! sympathetic neuron morphology trait [Term] id: VT:0001033 name: parasympathetic nervous system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the part of the autonomic nervous system that innervates smooth muscle, cardiac muscle and glands and regulates homeostasis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10069331] synonym: "cholinergic system morphology trait" EXACT [] synonym: "craniosacral system morphology trait" EXACT [] synonym: "somatic parasympathetic system morphology trait" EXACT [] is_a: VT:0002751 ! autonomic nervous system morphology trait [Term] id: VT:0001034 name: parasympathetic ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the ganglia of the parasympathetic nervous system, including the ciliary, pterygopalatine, submandibular, and otic ganglia in the cranial region and intrinsic (terminal) ganglia associated with target organs in the thorax and abdomen." [MP:0001034] synonym: "parasympathetic ganglia morphology trait" EXACT [] is_a: VT:0001033 ! parasympathetic nervous system morphology trait [Term] id: VT:0001035 name: submandibular ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the ganglion associated with the lingual nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001034 ! parasympathetic ganglion morphology trait [Term] id: VT:0001036 name: submandibular ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the small parasympathetic ganglion of the lingual nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001035 ! submandibular ganglion morphology trait [Term] id: VT:0001037 name: parasympathetic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons of the autonomic nervous system that are responsible for innervation of smooth muscle, cardiac muscle and glands and regulation of homeostasis." [MP:0001037] is_a: VT:0001033 ! parasympathetic nervous system morphology trait [Term] id: VT:0001038 name: cholinergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that utilize acetylcholine as a neurotransmitter." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0001039 name: cholinergic innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers that utilize acetylcholine as a neurotransmitter to a target tissue or cell.\nconsider: VT:0010041, VT:0010062" [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_obsolete: true [Term] id: VT:0001041 name: lacrimal gland cholinergic innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to the gland that secretes tears.\nconsider: VT:0010100, VT:0010123" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true [Term] id: VT:0001042 name: sublingual salivary gland cholinergic innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to the exocrine gland on the floor of the mouth that secretes saliva.\nconsider: VT:0010121, VT:0010126" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true [Term] id: VT:0001043 name: parotid salivary gland cholinergic innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to the exocrine gland lateral to the jaw that secretes saliva.\nconsider: VT:0010103, VT:0010124" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true [Term] id: VT:0001044 name: enteric nervous system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the part of the autonomic nervous system that innervates the gastrointestinal tract, the pancreas, and the gallbladder and can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport." [MP:0001044] is_a: VT:0002751 ! autonomic nervous system morphology trait [Term] id: VT:0001045 name: enteric ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the groups of nerve cell bodies associated with the enteric neurons." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "enteric ganglia morphology trait" EXACT [] is_a: VT:0001044 ! enteric nervous system morphology trait [Term] id: VT:0001046 name: enteric neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that innervate alimentary tube." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001044 ! enteric nervous system morphology trait [Term] id: VT:0001047 name: enteric cholinergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that utilize acetylcholine as a neurotransmitter and innervate the alimentary tube." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0001038 ! cholinergic neuron morphology trait is_a: VT:0001046 ! enteric neuron morphology trait [Term] id: VT:0001048 name: enteric neuron quantity namespace: Trait.ontology def: "The proportion or number of neurons that innervate the alimentary tube." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "enteric neuron number" EXACT [] is_a: VT:0001046 ! enteric neuron morphology trait [Term] id: VT:0001049 name: enteric cholinergic innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers that utilize acetylcholine as a neurotransmitter to the alimentary tube.\nconsider: VT:0010074, VT:0010099" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true [Term] id: VT:0001051 name: somatic motor system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the neural tissue involved in the transmission of motor signals." [MP:0001051] is_a: VT:0002752 ! somatic nervous system morphology trait [Term] id: VT:0001052 name: muscle innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of sensory or motor nerve fibers to targets in the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body.\nconsider: VT:0010189, VT:0010262" [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0001053 name: neuromuscular synapse morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the membrane to membrane contact of a motor axon and a muscle myofiber." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "neuromuscular junction morphology trait" EXACT [] is_a: VT:0001051 ! somatic motor system morphology trait is_a: VT:0015110 ! synapse morphology trait [Term] id: VT:0001056 name: cranial nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the twelve nerves that emerge from the cranium as opposed to the spinal nerves." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002752 ! somatic nervous system morphology trait [Term] id: VT:0001059 name: optic nerve size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the second cranial nerve, which is responsible for conveying visual information from the retina to the brain." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0001330 ! optic nerve morphology trait [Term] id: VT:0001061 name: oculomotor nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the 3rd cranial nerve, which normally sends motor fibers to the levator muscles of the eyelid and to the superior rectus, inferior rectus, and inferior oblique muscles of the eye; and also sends parasympathetic efferents to the muscles controlling pupillary constriction and accommodation." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "CN-III morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001062 name: oculomotor nerve size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nerve of the extraocular muscles, iris and ciliary body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001061 ! oculomotor nerve morphology trait [Term] id: VT:0001063 name: trochlear nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the 4th cranial nerve, which normally carries the motor innervation of the superior oblique muscles of the eye." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "CN-IV morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001064 name: trochlear nerve size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nerve of the superior oblique muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001063 ! trochlear nerve morphology trait [Term] id: VT:0001065 name: trigeminal nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the chief sensory nerve of the face and motor nerve of the muscles of mastication; has three major divisions: ophthalmic, maxillary and mandibular." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "CN-V morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001067 name: mandibular nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the third division of the trigeminal nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001065 ! trigeminal nerve morphology trait [Term] id: VT:0001068 name: mandibular nerve branching morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the projected axons of the mandibular nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001067 ! mandibular nerve morphology trait [Term] id: VT:0001070 name: abducens nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the 6th cranial nerve, which originates in the abducens nucleus of the pons and sends motor fibers to the lateral rectus muscles of the eye." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "CN-VI morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001071 name: facial nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the motor axons from the pons to the face." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "CN-VII morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001072 name: vestibulocochlear nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the sensory nerve innervating the receptor cells of the membranous labyrinth." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "CN-VIII morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001073 name: glossopharyngeal nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of sensory and autonomic axons to the parotid gland, carotid body, posterior third of the tongue." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "CN-IX morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001074 name: vagus nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the autonomic, sensory and motor axons of the tenth cranial nerve to the pharynx, larynx, trachea, lungs, heart and GI tract." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "CN-X morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001075 name: accessory nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the 11th cranial nerve, which normally originates from neurons in the medulla and in the cervical spinal cord." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "CN-XI morphology trait" EXACT [] synonym: "spinal accessory nerve morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001076 name: hypoglossal nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of motor axons to the tongue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CN-XII morphology trait" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0001077 name: spinal nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the paired peripheral nerves formed by the union of the dorsal and ventral spinal roots from each spinal cord segment." [MP:0001077] is_a: VT:0002752 ! somatic nervous system morphology trait [Term] id: VT:0001078 name: phrenic nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the motor and sensory neuron axons to the diaphragm and other tissues." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001077 ! spinal nerve morphology trait [Term] id: VT:0001081 name: cranial ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the groups of nerve cell bodies associated with the twelve cranial nerves." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "cranial ganglia morphology trait" EXACT [] is_a: VT:0002752 ! somatic nervous system morphology trait [Term] id: VT:0001082 name: geniculate ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cranial ganglion VII morphology trait" EXACT [] is_a: VT:0000960 ! sensory ganglion morphology trait is_a: VT:0001081 ! cranial ganglion morphology trait [Term] id: VT:0001083 name: geniculate ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the intermediate nerve fibers associated with the facial nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001082 ! geniculate ganglion morphology trait [Term] id: VT:0001084 name: petrosal ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lower group of sensory neuron cell bodies associated with the glossopharyngeal nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "extracraniale ganglion morphology trait" EXACT [] synonym: "inferior glossopharyngeal ganglion morphology trait" EXACT [] synonym: "inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve morphology trait" EXACT [] is_a: VT:0001096 ! glossopharyngeal ganglion morphology trait [Term] id: VT:0001085 name: petrosal ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the inferior of two sensory ganglia on the glossopharyngeal nerve immediately inferior to its exit from the jugular formamen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001084 ! petrosal ganglion morphology trait [Term] id: VT:0001087 name: nodose ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large group of sensory neuron cell bodies, anterior to the jugular vein, associated with the vagus nerve (tenth cranial nerve)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cranial ganglion X" EXACT [] synonym: "inferior vagus ganglion morphology trait" EXACT [] synonym: "inferior vagus ganglion of the vagus (X) nerve morphology trait" EXACT [] is_a: VT:0000960 ! sensory ganglion morphology trait is_a: VT:0001100 ! vagus ganglion morphology trait [Term] id: VT:0001088 name: nodose ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nodose ganglion." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001087 ! nodose ganglion morphology trait [Term] id: VT:0001089 name: nodose ganglion neuron quantity namespace: Trait.ontology def: "The proportion or number of the sensory neurons comprising the nodose ganglion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001087 ! nodose ganglion morphology trait [Term] id: VT:0001091 name: outer hair cell stereocilia size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nonmotile, actin-filled specialized microvilli (stereocilia) which are normally arrayed on cochlear outer hair cells." [MP:0004531] is_a: VT:0000894 ! cochlear hair cell stereocilia size trait is_a: VT:0001028 ! cochlear outer hair cell stereociliary bundle morphology trait [Term] id: VT:0001092 name: trigeminal ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of sensory neuron cell bodies associated with the trigeminal nerve (fifth cranial nerve)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cranial ganglion V morphology trait" EXACT [] synonym: "Gasserian ganglion morphology trait" EXACT [] synonym: "semilunar ganglion morphology trait" EXACT [] synonym: "trigeminal ganglion of trigenmial (V) nerve morphology trait" EXACT [] is_a: VT:0000960 ! sensory ganglion morphology trait is_a: VT:0001081 ! cranial ganglion morphology trait [Term] id: VT:0001094 name: trigeminal ganglion cell size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cells of the trigeminal ganglion." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001095 ! trigeminal ganglion size trait [Term] id: VT:0001095 name: trigeminal ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of sensory neuron cell bodies associated with the trigeminal nerve." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001092 ! trigeminal ganglion morphology trait [Term] id: VT:0001096 name: glossopharyngeal ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of neuron cell bodies associated with the ninth cranial nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cranial ganglion XI morphology trait" EXACT [] is_a: VT:0001081 ! cranial ganglion morphology trait [Term] id: VT:0001097 name: superior glossopharyngeal ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the upper ganglion of the glossopharyngeal nerve located at the jugular foramen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "intracranial ganglion morphology trait" EXACT [] synonym: "jugular ganglion morphology trait" BROAD [] synonym: "superior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve morphology trait" EXACT [] is_a: VT:0001096 ! glossopharyngeal ganglion morphology trait [Term] id: VT:0001098 name: superior glossopharyngeal ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the upper ganglion of the glossopharyngeal nerve located at the jugular foramen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001097 ! superior glossopharyngeal ganglion morphology trait [Term] id: VT:0001100 name: vagus ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of sensory neuron cell bodies associated with the vagus nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cranial ganglion X morphology trait" EXACT [] is_a: VT:0001081 ! cranial ganglion morphology trait [Term] id: VT:0001101 name: superior vagus ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the upper ganglion of the vagus nerve located at the jugular foramen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "jugular ganglion morphology trait" BROAD [] synonym: "superior vagus ganglion of the vagus (X) nerve morphology trait" EXACT [] is_a: VT:0001100 ! vagus ganglion morphology trait [Term] id: VT:0001102 name: superior vagus ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the upper ganglion of the vagus nerve located at the jugular foramen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001101 ! superior vagus ganglion morphology trait [Term] id: VT:0001105 name: peripheral nervous system glial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the non-neuronal cells of the peripheral nervous system that form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "neuroglia morphology trait" BROAD [] synonym: "peripheral nervous system glia morphology trait" EXACT [] synonym: "PNS glia morphology trait" EXACT [] is_a: VT:0003634 ! glial cell morphology trait [Term] id: VT:0001106 name: Schwann cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells which form the insulating myelin sheaths of peripheral axons." [MP:0001106] is_a: VT:0001105 ! peripheral nervous system glial cell morphology trait [Term] id: VT:0001107 name: Schwann cell quantity namespace: Trait.ontology def: "The proportion or number of the cells that form the insulating myelin sheaths of peripheral axons." [MP:0001106] synonym: "Schwann cell number" EXACT [] is_a: VT:0001106 ! Schwann cell morphology trait [Term] id: VT:0001119 name: female reproductive system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organs associated with producing offspring in the gender that bears the offspring." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002160 ! reproductive system morphology trait [Term] id: VT:0001120 name: uterus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the hollow muscular organ where the embryo/fetus develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000322 is_a: VT:0001119 ! female reproductive system morphology trait [Term] id: VT:0001125 name: oocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the immature ova." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002208 ! germ cell morphology trait [Term] id: VT:0001126 name: ovary morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the female reproductive gland containing the germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "gonad morphology trait" BROAD [] xref: ATOL:0000324 is_a: VT:0000653 ! sex gland morphology trait is_a: VT:0001119 ! female reproductive system morphology trait [Term] id: VT:0001127 name: ovary size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the female reproductive gland containing the germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000325 is_a: VT:0000655 ! sex gland size trait is_a: VT:0001126 ! ovary morphology trait [Term] id: VT:0001130 name: ovarian folliculogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of the spherical ovum in the ovary." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:8849725] is_a: VT:0010043 ! ovarian follicle physiology trait [Term] id: VT:0001131 name: ovarian follicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fluid-filled ovarian structure containing an oocyte." [ISBN:90-801886-5-4 "Compendium of Animal Reproduction", VTO:INRA "INRA curator"] xref: ATOL:0000327 is_a: VT:0001126 ! ovary morphology trait [Term] id: VT:0001133 name: luteal cell differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which relatively unspecialized cells acquire the specialized features of the cells of the corpus luteum of the ovary." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:GO "Definition from the Gene Ontology", PMID:8646780] is_a: VT:0003356 ! luteinization trait [Term] id: VT:0001135 name: cervix morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the opening of the uterus to the vagina." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000329 is_a: VT:0001119 ! female reproductive system morphology trait [Term] id: VT:0001137 name: cervical epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial layer of the cervix." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] xref: ATOL:0000330 is_a: VT:0001135 ! cervix morphology trait [Term] id: VT:0001138 name: cervical squamous epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the scaly epithelial layer of the cervix." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator", PMID:10227294] xref: ATOL:0000331 is_a: VT:0001137 ! cervical epithelium morphology trait [Term] id: VT:0001139 name: vagina morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the female reproductive canal located between the uterus and the vulva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000332 is_a: VT:0001119 ! female reproductive system morphology trait [Term] id: VT:0001140 name: vaginal epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial layer of the vagina." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator", PMID:10227294] xref: ATOL:0000333 is_a: VT:0001139 ! vagina morphology trait [Term] id: VT:0001141 name: vaginal epithelium thickness namespace: Trait.ontology def: "The distance between the surfaces of the vaginal epithelial layer." [RGD:MS] xref: ATOL:0000334 is_a: VT:0001140 ! vaginal epithelium morphology trait [Term] id: VT:0001142 name: vaginal opening morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the opening to the genital canal." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000335 is_a: VT:0001139 ! vagina morphology trait [Term] id: VT:0001143 name: vaginal opening size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the external vaginal opening." [PMID:9808631] xref: ATOL:0000336 is_a: VT:0001142 ! vaginal opening morphology trait [Term] id: VT:0001145 name: male reproductive system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organs associated with producing offspring in the gender that produces spermatozoa." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002160 ! reproductive system morphology trait [Term] id: VT:0001146 name: testes morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the male reproductive glands." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "gonad morphology trait" BROAD [] synonym: "testis morphology trait" EXACT [] xref: ATOL:0000338 is_a: VT:0000653 ! sex gland morphology trait is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0001148 name: testes size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the male reproductive glands." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000339 is_a: VT:0001146 ! testes morphology trait [Term] id: VT:0001150 name: scrotum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the external sac of skin that encloses the testes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:1709129] xref: ATOL:0000340 is_a: VT:0002669 ! scrotum morphology trait [Term] id: VT:0001151 name: foreskin size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the loose fold of skin that covers the penis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:1709129] is_a: VT:0003553 ! foreskin morphology trait [Term] id: VT:0001153 name: seminiferous tubule size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the tubules in the testes where spermatogenesis occurs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9808631] xref: ATOL:0000341 is_a: VT:0002216 ! seminiferous tubule morphology trait [Term] id: VT:0001156 name: spermatogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of the male gametes." [PMID:10594039] synonym: "sperm development trait" EXACT [] xref: ATOL:0000342 is_a: VT:0001929 ! gametogenesis trait [Term] id: VT:0001158 name: prostate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the gland surrounding the beginning of the urethra in males that secretes part of the seminal fluid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "prostate gland morphology trait" EXACT [] is_a: VT:0000653 ! sex gland morphology trait is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0001163 name: coagulating gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anterior lobe of the prostate." [PMID:11002344] synonym: "anterior prostate morphology trait" EXACT [] is_a: VT:0001158 ! prostate morphology trait [Term] id: VT:0001168 name: prostate epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the prostate epithelium." [PMID:10906459] is_a: VT:0001158 ! prostate morphology trait [Term] id: VT:0001169 name: bulbourethral gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the gland in males that lies along the prostate gland and secretes a fluid component of the seminal fluid into the urethra." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10215624, PMID:10906459] synonym: "Cowper's gland morphology trait" EXACT [] xref: ATOL:0000346 is_a: VT:0000653 ! sex gland morphology trait is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0001170 name: bulbourethral gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the gland in males that lies along the prostate gland and secretes a fluid component of the seminal fluid into the urethra." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10906459] synonym: "Cowper's gland size trait" EXACT [] xref: ATOL:0000347 is_a: VT:0000655 ! sex gland size trait is_a: VT:0001169 ! bulbourethral gland morphology trait [Term] id: VT:0001173 name: bulbourethral gland ductal cell quantity namespace: Trait.ontology def: "The proportion or number of cells found in the ducts through which the bulbourethral glands discharge mucus into the spongy part of the urethra." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "bulbuorethral gland ductal cell number" EXACT [] synonym: "Cowper's gland ductal cell number" EXACT [] xref: ATOL:0000348 is_a: VT:0001169 ! bulbourethral gland morphology trait [Term] id: VT:0001175 name: lung morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of either or both of the spongy organs of respiration contained within the pleural cavity of the thorax." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002132 ! respiratory system morphology trait [Term] id: VT:0001176 name: lung development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the either or both of the spongy organs of respiration contained within the pleural cavity of the thorax during its/their formation and differentiation." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0003115 ! respiratory system development trait [Term] id: VT:0001178 name: lung cell quantity namespace: Trait.ontology def: "The proportion or number of cells in all or part of either or both of the spongy organs of respiration contained within the pleural cavity of the thorax." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "lung cell number" EXACT [] is_a: VT:0001175 ! lung morphology trait [Term] id: VT:0001179 name: alveolar septum thickness namespace: Trait.ontology def: "The distance between the surfaces of the structure that separates the air sacs (alveoli) in the lung." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:MS] is_a: VT:0002270 ! respiratory alveoli morphology trait [Term] id: VT:0001180 name: inner hair cell stereociliary bundle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the typically linear or U-shaped pattern of arrangement of mechanosensitive hair bundles located at the apical end of cochlear IHCs; each hair bundle is normally composed of ~100 nonmotile, actin-filled microvilli (stereocilia) arranged in rows of increasing height and coupled to one another by morphologically distinct links: tip links, horizontal top connectors, shaft connectors, and ankle links; most hair bundles also possess a single motile kinocilium immediately adjacent to the tallest row of stereocilia; a fifth link type, the kinocilial link, connects the kinocilium to its neighboring stereocilia." [MP:0004532] is_a: VT:0000816 ! cochlear hair cell stereociliary bundle morphology trait is_a: VT:0004393 ! cochlear inner hair cell morphology trait [Term] id: VT:0001183 name: respiratory alveoli size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the saclike terminal dilation of the respiratory bronchioles." [PMID:8060614] is_a: VT:0002270 ! respiratory alveoli morphology trait [Term] id: VT:0001200 name: skin thickness namespace: Trait.ontology def: "The distance between the surfaces of the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002096 ! skin morphology trait [Term] id: VT:0001201 name: skin translucence namespace: Trait.ontology def: "The ability of light to be transmitted diffusely through the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002096 ! skin morphology trait [Term] id: VT:0001213 name: skin cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "skin cell number" EXACT [] is_a: VT:0002096 ! skin morphology trait [Term] id: VT:0001216 name: epidermis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the superficial epithelial portion of the skin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "epidermal layer morphology trait" EXACT [] is_a: VT:4000009 ! skin layer morphology trait [Term] id: VT:0001219 name: epidermis thickness namespace: Trait.ontology def: "The distance between the surfaces of the superficial epithelial portion of the skin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001216 ! epidermis morphology trait [Term] id: VT:0001222 name: epidermis cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the superficial epithelial portion of the skin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001216 ! epidermis morphology trait [Term] id: VT:0001225 name: epidermis development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the superficial epithelial portion of the skin during its formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10811912] synonym: "epidermal layer development trait" EXACT [] is_a: VT:0003941 ! skin development trait [Term] id: VT:0001231 name: epidermis stratum basale morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the deepest layer of the epidermis, which is composed of dividing stem cells and anchoring cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "basal layer morphology trait" EXACT [] synonym: "columnar layer morphology trait" EXACT [] synonym: "germinative layer morphology trait" EXACT [] synonym: "palisade layer morphology trait" EXACT [] synonym: "stratum basale epidermis morphology trait " EXACT [] synonym: "stratum cylindricum morphology trait" EXACT [] synonym: "stratum germinativum morphology trait " EXACT [] is_a: VT:0001216 ! epidermis morphology trait [Term] id: VT:0001236 name: epidermis stratum spinosum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the layer of polyhedral cells in the epidermis between the stratum granulosum and stratum basale." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "prickle cell layer morphology trait" EXACT [] is_a: VT:0001216 ! epidermis morphology trait [Term] id: VT:0001237 name: epidermis stratum spinosum cell size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cells of the layer between the stratum granulosum and stratum basale in the epidermis." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "prickle cell size trait" EXACT [] is_a: VT:0001236 ! epidermis stratum spinosum morphology trait [Term] id: VT:0001238 name: epidermis stratum spinosum thickness namespace: Trait.ontology def: "The distance between the surfaces of the layer between the stratum granulosum and stratum basale in the epidermis." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "prickle cell layer thickness" EXACT [] synonym: "stratum spinosum thickness" EXACT [] is_a: VT:0001236 ! epidermis stratum spinosum morphology trait [Term] id: VT:0001239 name: epidermis stratum granulosum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the layer of flattened cells containing basophilic granules of keratohyalin and lying just above the stratum spinosum (spiny layer) of the epidermis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001216 ! epidermis morphology trait [Term] id: VT:0001240 name: epidermis stratum corneum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outer layer of the epidermis, consisting of several layers of flat keratinized non-nucleated cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "horny layer morphology trait" EXACT [] synonym: "stratum corneum morphology trait" EXACT [] is_a: VT:0001216 ! epidermis morphology trait [Term] id: VT:0001242 name: epidermis stratum corneum thickness namespace: Trait.ontology def: "The distance between the surfaces of the outer layer of the epidermis, consisting of several layers of flat keratinized non-nucleated cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "horny layer thickness" EXACT [] is_a: VT:0001240 ! epidermis stratum corneum morphology trait [Term] id: VT:0001243 name: dermis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the layer of the skin deep to the epidermis, consisting of a dense bed of vascular, connective tissue." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "corium morphology trait" EXACT [] synonym: "cutis vera morphology trait" EXACT [] synonym: "dermal layer morphology trait" EXACT [] is_a: VT:4000009 ! skin layer morphology trait [Term] id: VT:0001245 name: dermis thickness namespace: Trait.ontology def: "The distance between the surfaces of the layer of skin deep to the epidermis, consisting of a dense bed of vascular connective tissue." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "corium thickness" EXACT [] synonym: "dermis thickness" EXACT [] is_a: VT:0001243 ! dermis morphology trait [Term] id: VT:0001248 name: connective tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the physical or functional supporting tissue of the body, a major constituent of which is an extracellular matrix of ground substance, protein fibers, and structural glycoproteins." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10469309] is_a: VT:0100002 ! connective tissue trait [Term] id: VT:0001250 name: dermis stratum papillare morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outer layer of the dermis, characterized by ridges or papillae protruding into the epidermis." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "corpus papillary morphology trait" EXACT [] synonym: "papillary layer morphology trait" EXACT [] synonym: "stratum papillare corii morphology trait" EXACT [] synonym: "stratum papillare morphology trait" EXACT [] is_a: VT:0001243 ! dermis morphology trait [Term] id: VT:0001253 name: body height namespace: Trait.ontology def: "The vertical dimension of the body of an organism, usually measured from the top of the head to the bottom of feet or hindlimbs." [Dorland:Dorlands Illustrated Medical Dictionary] xref: ATOL:0000350 is_a: VT:0100005 ! body size trait [Term] id: VT:0001256 name: body length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the body of an organism." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] xref: ATOL:0001657 is_a: VT:0100005 ! body size trait [Term] id: VT:0001259 name: body mass namespace: Trait.ontology def: "The amount of matter in the body of an organism." [RGD:MS] synonym: "body weight" RELATED [] xref: ATOL:0000351 is_a: VT:0100005 ! body size trait [Term] id: VT:0001274 name: vibrissa shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the stiff hairs projecting from the face, which act as touch receptors." [MeSH:D014738 "vibrissae", MP:0002098] synonym: "vibrissae shape" RELATED [] synonym: "whisker shape" EXACT [] is_a: VT:0002098 ! vibrissa morphology trait [Term] id: VT:0001277 name: vibrissa organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the stiff hairs projecting from the face, which act as touch receptors." [MeSH:D014738 "vibrissae", MP:0002098] synonym: "vibrissae pattern" RELATED [] synonym: "whisker pattern" EXACT [] is_a: VT:0002098 ! vibrissa morphology trait [Term] id: VT:0001280 name: vibrissa retention trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to maintain the whiskers without noticeable loss." [MP:0001280] synonym: "vibrissae retention" RELATED [] is_a: VT:0015057 ! head physiology trait [Term] id: VT:0001281 name: vibrissa length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the stiff hairs projecting from the face, which act as touch receptors." [MeSH:D014738 "vibrissae", MP:0002098] synonym: "vibrissae length" RELATED [] synonym: "whisker length" EXACT [] is_a: VT:0002098 ! vibrissa morphology trait [Term] id: VT:0001283 name: vibrissa density namespace: Trait.ontology def: "OBSOLETE. The amount of space between whiskers." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "vibrissae density" RELATED [] is_obsolete: true [Term] id: VT:0001286 name: eye development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the organ of vision and its supporting structures." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] xref: GO:0001654 "eye development" is_a: VT:0003935 ! craniofacial development trait [Term] id: VT:0001288 name: lens induction trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the beginning of the formation of the transparent structure of the eye responsible for focusing light rays." [MP:0001288, MP:0005545] is_a: VT:0005545 ! lens development trait [Term] id: VT:0001289 name: hyaloid capillary system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the transient vascular system of the eye during its formation, differentiation, and degeneration." [MP:0001289] is_a: VT:0001286 ! eye development trait [Term] id: VT:0001290 name: time of eyelid opening namespace: Trait.ontology def: "The stage of development when the eyelids first separate." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001340 ! eyelid morphology trait [Term] id: VT:0001292 name: lens vesicle development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the primordium of the lens of the eye during its formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005545 ! lens development trait [Term] id: VT:0001299 name: eye orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the eyes and their supporting structures in relation to each other or in relation to other craniofacial structures." [MP:0001299] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0001300 name: distance between the eyes namespace: Trait.ontology def: "OBSOLETE. The distance between the eyes.\nconsider: VT:0001299" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0001301 name: inner hair cell stereocilia quantity namespace: Trait.ontology def: "The proportion or numbers of the nonmotile, actin-filled specialized microvilli (stereocilia) normally arrayed on the inner sensory epithelial cells of the cochlea, which are normally in synaptic contact with the auditory nerve." [MP:0004534] synonym: "inner hair cell sterocilia number" EXACT [] is_a: VT:0000893 ! cochlear hair cell stereocilia quantity is_a: VT:0001180 ! inner hair cell stereociliary bundle morphology trait [Term] id: VT:0001303 name: lens morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the transparent structure of the eye responsible for focusing light rays." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001303] is_a: VT:0005193 ! anterior eye segment morphology trait [Term] id: VT:0001304 name: lens clarity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree of transparency of the structure of the eye responsible for focusing light rays" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001303] is_a: VT:0001303 ! lens morphology trait [Term] id: VT:0001305 name: lens size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the transparent structure of the eye responsible for focusing light rays." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001303] is_a: VT:0001303 ! lens morphology trait [Term] id: VT:0001308 name: lens polarity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the orientation of the lens during development." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001308] is_a: VT:0005545 ! lens development trait [Term] id: VT:0001310 name: conjunctiva morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mucous membrane that lines the inner surface of the eyelids and the front of the eyeball." [MP:0001310] is_a: VT:0005193 ! anterior eye segment morphology trait [Term] id: VT:0001312 name: cornea morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001312] is_a: VT:0005193 ! anterior eye segment morphology trait [Term] id: VT:0001314 name: cornea clarity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree of transparency of the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001312] synonym: "corneal clarity trait" EXACT [] is_a: VT:0001312 ! cornea morphology trait [Term] id: VT:0001317 name: pupil morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the central circular aperture of the iris through which light rays enter the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001317] is_a: VT:0001322 ! iris morphology trait [Term] id: VT:0001318 name: pupil clarity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree of transparency of the central circular aperture of the iris through which light rays normally enter the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001318] is_a: VT:0001317 ! pupil morphology trait [Term] id: VT:0001319 name: pupil shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the aperture of the iris through which light rays enter the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001319] is_a: VT:0001317 ! pupil morphology trait [Term] id: VT:0001321 name: pupil size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the central circular aperture of the iris through which light rays enter the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001317 ! pupil morphology trait [Term] id: VT:0001322 name: iris morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001322] is_a: VT:0005194 ! anterior uvea morphology trait [Term] id: VT:0001323 name: inner hair cell stereocilia size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nonmotile, actin-filled specialized microvilli (stereocilia) normally arrayed on cochlear inner hair cells." [MP:0004536] is_a: VT:0000894 ! cochlear hair cell stereocilia size trait is_a: VT:0001180 ! inner hair cell stereociliary bundle morphology trait [Term] id: VT:0001324 name: eye pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the eye." [MP:001324] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0001325 name: retina morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors." [MP:0001325] is_a: VT:0002864 ! ocular fundus morphology trait [Term] id: VT:0001328 name: retinal layer organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the sheets of cells comprising the optic part of the retina." [MP:0001328] is_a: VT:0003727 ! retinal layer morphology trait [Term] id: VT:0001329 name: retina cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the thin layer of neural tissue lining the back of the eyeball which contains visual receptors." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001325] synonym: "retina cell number" EXACT [] synonym: "retinal cell number" EXACT [] is_a: VT:0001325 ! retina morphology trait [Term] id: VT:0001330 name: optic nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the second cranial nerve which is responsible for conveying visual information from the retina to the brain; it extends from the retina to the optic chiasm where part of its fibers become the optic tract and cross to the opposite side and pass to the geniculate bodies." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CN-II" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait is_a: VT:0005195 ! posterior eye segment morphology trait [Term] id: VT:0001332 name: optic nerve innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers from the second cranial nerve which is responsible for conveying visual information from the retina to the brain.\nconsider: VT:0006221, VT:0010141" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_obsolete: true [Term] id: VT:0001334 name: optic tract size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the paired bands of optic nerve fibers running from the optic chiasma to the lateral geniculate body and midbrain." [MP:0004267] is_a: VT:0004267 ! optic tract morphology trait [Term] id: VT:0001335 name: inner hair cell synaptic ribbon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the presynaptic active zone of mature cochlear IHCs which usually contain a single synaptic ribbon, i.e. a submicrometer, electron-dense structure tethering synaptic vesicles; each spiral ganglion neuron receives input from only one IHC synapse." [MP:0004562] synonym: "IHC synaptic ribbon morphology trait" RELATED [] is_a: VT:0004393 ! cochlear inner hair cell morphology trait [Term] id: VT:0001336 name: active-zone-anchored inner hair cell synaptic ribbon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the usually single synaptic ribbon, a characteristic osmiophilic, electron-dense structure to which synaptic vesicles are tethered at the active zone of the cochlear inner hair cell afferent synapse." [MP:0004562] is_a: VT:0001335 ! inner hair cell synaptic ribbon morphology trait [Term] id: VT:0001337 name: eye moisture amount namespace: Trait.ontology def: "The proportion, quantity, or volume of moisture in the eye." [PMID:10069331] is_a: VT:0001348 ! lacrimal gland physiology trait [Term] id: VT:0001340 name: eyelid morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the skin folds covering the front of the eyeball." [MP:0001340] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0001345 name: meibomian gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the sebaceous glands embedded in the tarsal plate of each eyelid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005252] synonym: "Glandulae Tarsales size trait" EXACT [] synonym: "glandulae tarsales size trait" EXACT [] synonym: "Palpebral Glands size trait" EXACT [] synonym: "tarsal gland size trait" EXACT [] is_a: VT:0005252 ! meibomian gland morphology trait [Term] id: VT:0001346 name: lacrimal gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the glands that secrete tears." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001346] synonym: "lachrymal gland morphology trait" EXACT [] synonym: "lacrimal system morphology trait" EXACT [] synonym: "tear duct morphology trait" EXACT [] is_a: VT:0002092 ! eye morphology trait is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0001348 name: lacrimal gland physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the glands that secrete tears." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005253 ! eye physiology trait [Term] id: VT:0001349 name: tear production trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the secretion of watery saline solution by the lacrimal glands." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0001348 ! lacrimal gland physiology trait [Term] id: VT:0001359 name: organ of Corti patterning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the organization of the various cell types within the organ of Corti into a set number of distinct rows." [MP:0006331] is_a: VT:0000042 ! organ of Corti morphology trait [Term] id: VT:0001360 name: social investigation trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the behavior of animals to approach and examine other animals" [MGI:csmith, MGI:smb, MP:0001360] is_a: VT:0015008 ! total fat pad mass [Term] id: VT:0001365 name: Deiters cell quantity namespace: Trait.ontology def: "The proportion or numbers of the supporting cells of the spiral organ which are attached to the basement membrane and receive the hair cells between their free extremities." [MP:0004302] synonym: "Deiters cell number" EXACT [] is_a: VT:0004302 ! Deiters cell morphology trait [Term] id: VT:0001366 name: pillar cell quantity namespace: Trait.ontology def: "The proportion or numbers of the supporting cells that form the inner and outer walls of the tunnel in the organ of Corti." [MP:0003825] synonym: "pillar cell number" EXACT [] is_a: VT:0003825 ! pillar cell morphology trait [Term] id: VT:0001378 name: ejaculation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the propulsion of semen from the genital ducts and the urethra to the exterior." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003698 ! male reproductive system physiology trait [Term] id: VT:0001379 name: penile erection physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the achievement of a rigid and elevated state of the penis when the erectile tissue becomes filled with blood." [MP:0001379] synonym: "penile erection function " RELATED [] xref: ATOL:0000356 is_a: VT:0003698 ! male reproductive system physiology trait [Term] id: VT:0001387 name: spiral ligament size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the thickened periosteal lining of the bony cochlea that forms the outer wall of the cochlear duct to which the basal lamina attaches." [MP:0004288] is_a: VT:0004288 ! spiral ligament morphology trait [Term] id: VT:0001388 name: stationary movement trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to change body posture or shift a body part" [MGI:MP, MGI:smb] is_a: VT:0003491 ! voluntary movement trait [Term] id: VT:0001392 name: locomotor activity trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to move from place to place" [MGI:MP, MGI:smb] subset: slim_pig synonym: "locomotion" EXACT [] is_a: VT:0003491 ! voluntary movement trait [Term] id: VT:0001398 name: strial basal cell tight junction morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, or pattern of the tight junctions between basal cells of stria vascularis, resulting in the paracellular barrier between basal cells; closing the intrastrial space off from the perilymph and establishing its electrical isolation." [MP:0004464] is_a: VT:0004365 ! strial basal cell morphology trait [Term] id: VT:0001412 name: scratching trait namespace: Trait.ontology def: "any measurable or observable characteristic related to scraping of the skin, usually with the nails" [MGI:MP, MGI:smb] is_a: VT:0001440 ! grooming behavior trait [Term] id: VT:0001416 name: strial marginal cell quantity namespace: Trait.ontology def: "The proportion or numbers of the polarized columnar cells of epithelial origin which cover the lateral surface of the cochlear duct, secrete K+ and form a continuous sheet in contact with the endolymph." [MP:0004366] synonym: "strial marginal cell number" EXACT [] is_a: VT:0004366 ! strial marginal cell morphology trait [Term] id: VT:0001418 name: tectorial membrane size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the overlaying membrane of the cochlear duct." [MP:0003149] is_a: VT:0003149 ! tectorial membrane morphology trait [Term] id: VT:0001421 name: scala media size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the division of the spiral canal of the cochlea that contains the organ of Corti (the neuroepithelial receptor organ for hearing)." [MP:0003169] is_a: VT:0003169 ! scala media morphology trait [Term] id: VT:0001422 name: drinking behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the consumption of liquids" [MGI:smb] is_a: VT:0002069 ! consumption behavior trait [Term] id: VT:0001431 name: eating behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the consumption of solids" [MGI:smb] subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: VT:0002069 ! consumption behavior trait [Term] id: VT:0001437 name: swallowing reflex trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to pull food through the esophagus to the stomach in response to feeding" [MGI:MP, MGI:smb] is_a: VT:0002069 ! consumption behavior trait [Term] id: VT:0001440 name: grooming behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the standard of behavior of cleaning and/or keeping outward appearance tidy (self, mate or offspring)" [MGI:MP, MGI:smb] is_a: VT:0010442 ! behavior trait [Term] id: VT:0001444 name: scala tympani size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the spiral canal of the cochlea lying on the basal side of the spiral lamina." [MP:0003167] is_a: VT:0003167 ! scala tympani morphology trait [Term] id: VT:0001445 name: vestibular hair cell stereociliary bundle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mechanosensitive hair bundles which are composed of thick long microvilli (stereocilia) and are located at the apical end of vestibular hair cells of the utricle and saccule." [MP:0004515] synonym: "vestibular hair bundle morphology trait" RELATED [] synonym: "vestibular hair cell stereocilia morphology trait" RELATED [] is_a: VT:0002623 ! vestibular hair cell morphology trait [Term] id: VT:0001447 name: nest building behavior trait namespace: Trait.ontology def: "any measurable or observable behavioral characteristic related to the construction of a container or shelter made out of available materials" [MGI:smb, MP:0001447] is_a: VT:0015004 ! mesenteric fat pad morphology trait [Term] id: VT:0001449 name: learning/memory trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to ascertain, retain or recall information" [MGI:MP, MGI:smb] subset: slim_pig is_a: VT:0002063 ! learning/memory/conditioning trait [Term] id: VT:0001450 name: vestibular hair bundle inter-stereocilial link morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure or pattern of the morphologically and biochemically distinct link types that extend between the stereocilia of vestibular hair bundles." [MP:0004583] is_a: VT:0001445 ! vestibular hair cell stereociliary bundle morphology trait [Term] id: VT:0001451 name: vestibular hair bundle shaft connector morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure or pattern of the links that connect the shafts of neighboring stereocilia in vestibular hair bundles; each shaft connector is composed of a ruthenium red-reactive, electron-dense particle that is connected to the plasma membrane by several fine strands of variable length." [MP:0004584] is_a: VT:0001450 ! vestibular hair bundle inter-stereocilial link morphology trait [Term] id: VT:0001452 name: vestibular hair cell stereocilia quantity namespace: Trait.ontology def: "The proportion or numbers of the nonmotile, actin-filled specialized microvilli (stereocilia) which are normally arrayed on vestibular hair cells in a staircase-like pattern." [MP:0004517] synonym: "vestibular hair cell stereocilia number" EXACT [] is_a: VT:0001445 ! vestibular hair cell stereociliary bundle morphology trait [Term] id: VT:0001455 name: vestibular hair cell stereocilia size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nonmotile, actin-filled specialized microvilli (stereocilia) which are normally arrayed on vestibular hair cells in a staircase-like pattern." [MP:0004520] is_a: VT:0001445 ! vestibular hair cell stereociliary bundle morphology trait [Term] id: VT:0001456 name: otic capsule size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cartilage or bony capsule surrounding the inner ear mechanism." [MP:0000039] is_a: VT:0000039 ! otic capsule morphology trait [Term] id: VT:0001457 name: vestibular dark cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the nonsensory epithelial cells located above the vestibular melanocytes and adjacent to the sensory structures in the utricle and in the ampullae at the ends of each of the semicircular canals; these cells provide and maintain the high K+ ionic environment within the vestibular labyrinth and are therefore homologous to the marginal cells of the stria vascularis; they are joined to each other by tight junctions and provide a barrier between endolymph and perilymph." [MP:0004775] is_a: VT:0000034 ! vestibule morphology trait [Term] id: VT:0001459 name: vestibule size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cavity between the semicircular canals and the cochlea of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000034] is_a: VT:0000034 ! vestibule morphology trait [Term] id: VT:0001464 name: incus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the middle of the three auditory ossicles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005106] is_a: VT:0003739 ! auditory ossicle size trait is_a: VT:0005106 ! incus morphology trait [Term] id: VT:0001465 name: malleus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the largest of the three auditory ossicles, which resembles a club." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000029] is_a: VT:0000029 ! malleus morphology trait is_a: VT:0003739 ! auditory ossicle size trait [Term] id: VT:0001501 name: sleep behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the behaviors related to the readily reversible state of reduced awareness and metabolic activity that occurs periodically in many animals" [GO:0030431, MGI:smb, NBO:0000024] is_a: VT:0015001 ! femoral fat pad morphology trait [Term] id: VT:0001502 name: behavioral circadian rhythm trait namespace: Trait.ontology def: "any measurable or observable behavioral characteristic related to a daily biological activity cycle" [MGI:MP, MGI:smb] is_a: VT:0015001 ! femoral fat pad morphology trait [Term] id: VT:0001504 name: posture trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the position of the limbs or carriage of the body" [MGI:MP, MGI:smb] is_a: VT:0015005 ! parametrial fat pad morphology trait [Term] id: VT:0001505 name: body posture trait namespace: Trait.ontology def: "any measurable or observable characteristic related to carriage of the body" [MGI:MP, MGI:smb] is_a: VT:0001504 ! posture trait [Term] id: VT:0001516 name: motor coordination/balance trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability of an animal to maintain skillful and effective interaction of movements or maintenance of equilibrium" [MGI:MP, MGI:smb] is_a: VT:0002067 ! sensation behavior trait [Term] id: VT:0001525 name: balance trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to maintain equilibrium" [MGI:MP, MGI:smb] is_a: VT:0001516 ! motor coordination/balance trait [Term] id: VT:0001529 name: vocalization trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to produce sound from the vocal organs" [MGI:MP, MGI:smb] synonym: "Vocalization" EXACT [] is_a: VT:0015003 ! mammary fat pad morphology trait [Term] id: VT:0001539 name: caudal vertebra quantity namespace: Trait.ontology def: "The proportion or number of the bony segments of the tail; in tailless vertebrates, these vertebrae may be united to form the coccyx." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "caudal vertebra number" EXACT [] synonym: "caudal vertebrae number" EXACT [] synonym: "coccygeal vertebra number" EXACT [] is_a: VT:0000138 ! vertebra quantity [Term] id: VT:0001541 name: osteoclast physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in large, multinucleated cells that function in the absorption and removal of osseous tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10581033] synonym: "osteophage physiology trait" EXACT [] is_a: VT:0000070 ! bone physiology trait [Term] id: VT:0001542 name: bone strength trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of bone to withstand the application of force without yielding or breaking." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000070 ! bone physiology trait [Term] id: VT:0001544 name: cardiovascular system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the heart or vasculature." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0100017 ! circulatory system physiology trait [Term] id: VT:0001547 name: lipid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body fluid or tissue of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002118 ! lipid homeostasis trait [Term] id: VT:0001553 name: blood free fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of organic, monobasic acids derived from hydrocarbons, which are complexed with serum albumin for transport; they are saturated and unsaturated." [MeSH:D005230 "fatty acids, nonesterified"] synonym: "circulating fatty acid level" RELATED [] synonym: "circulating free fatty acids content" RELATED [] synonym: "FFA level" RELATED [] synonym: "free fatty acids level" RELATED [] is_a: VT:0003949 ! blood lipid amount is_a: VT:0010046 ! fatty acid amount [Term] id: VT:0001560 name: blood insulin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this polypeptide hormone, secreted by beta cells of the pancreas, that promotes glucose utilization, protein synthesis, and the formation and storage of neutral lipids." [MP:0001560] synonym: "blood insulin level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0001562 name: blood calcium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this bivalent element." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood calcium level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0001565 name: blood phosphate amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this salt or ester of phosphoric acid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: often associated with anomalous bone mineralization synonym: "blood phosphate level" RELATED [] synonym: "circulating phosphate level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0001569 name: blood bilirubin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this yellow heme breakdown product." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood bilirubin level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0001570 name: blood enzyme amount namespace: Trait.ontology def: "The proportion or quantity in whole blood, serum, or plasma of any of the proteins that act as catalysts for biological reactions." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood enzyme level" RELATED [] is_a: VT:0005416 ! blood protein amount [Term] id: VT:0001573 name: blood alanine transaminase amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this enzyme, which transfers amino groups from l-alanine to 2-ketoglutarate, or the reverse (from l-glutamate to pyruvate); serum concentration is increased in viral hepatitis and myocardial infarction." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "alanine aminotransferase level" RELATED [] synonym: "alanine transaminase level" RELATED [] synonym: "ALT level" RELATED [] synonym: "circulating alanine transaminase level" RELATED [] synonym: "glutamic-pyruvic transaminase level" RELATED [] is_a: VT:0001570 ! blood enzyme amount [Term] id: VT:0001586 name: erythrocyte quantity namespace: Trait.ontology def: "The proportion or number in the blood of the cells that carry oxygen, the red blood cells." [MP:0001586] synonym: "erythrocyte count" EXACT [] synonym: "erythrocyte number" EXACT [] synonym: "RBC count" EXACT [] synonym: "red blood cell count" EXACT [] synonym: "red blood cell number" RELATED [] synonym: "red blood cell quantity" EXACT [] is_a: VT:0000237 ! blood cell quantity is_a: VT:0002447 ! erythrocyte morphology trait [Term] id: VT:0001588 name: hemoglobin amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the oxygen-carrying protein of erythrocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001588] synonym: "haemoglobin level" EXACT [] is_a: VT:0002447 ! erythrocyte morphology trait [Term] id: VT:0001601 name: myelopoiesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of myeloid cells from the pluripotent hematopoietic stem cells in the bone marrow via myeloid stem cells, including the production of leukocytes in blood, such as monocytes and granulocytes, and precursor cells for macrophages and dendritic cells found in the lymphoid tissue." [MeSH:D038042 "Myelopoiesis"] synonym: "myeloid cell development trait" EXACT [] synonym: "myeloid cell differentiation" EXACT [] is_a: VT:0005460 ! leukopoiesis trait [Term] id: VT:0001614 name: blood vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the tubular channels through which the blood circulates." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "vascular morphology trait" RELATED [] is_a: VT:0002127 ! cardiovascular system morphology trait [Term] id: VT:0001649 name: symphysis menti morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fibrocartilagenous union of the two halves of the mandible (embryonic stages)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001649] is_a: VT:0003935 ! craniofacial development trait [Term] id: VT:0001661 name: total life span namespace: Trait.ontology def: "The full period of time from birth to death of an organism." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:MS] is_a: VT:0005372 ! life span trait [Term] id: VT:0001663 name: gastrointestinal system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organ system that converts ingested food to nutrients and energy." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:1000776 ! alimentary system trait [Term] id: VT:0001664 name: digestion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the mechanical, chemical, and enzymatic conversion of ingested food into material suitable for assimilation for synthesis of tissues or liberation of energy." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:DHM "Diane Munzenmaier, Rat Genome Database"] synonym: "digestive function" EXACT [] is_a: VT:0001663 ! gastrointestinal system physiology trait [Term] id: VT:0001666 name: nutrient absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in constituents of food necessary for normal physiologic function." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001663 ! gastrointestinal system physiology trait [Term] id: VT:0001667 name: carbohydrate absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in substances composed of carbon, hydrogen, and oxygen according to the general formula Cn(H2O)n; sugars and starches are examples." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001666 ! nutrient absorption trait [Term] id: VT:0001668 name: fructose absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in this 5-carbon sugar." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001667 ! carbohydrate absorption trait [Term] id: VT:0001669 name: glucose absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in the monosaccharide that is the end product of carbohydrate digestion; D-glucose serves as a primary energy source for living organisms." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001667 ! carbohydrate absorption trait [Term] id: VT:0001670 name: mineral absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in any inorganic element or compound that has importance in body functions." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0001666 ! nutrient absorption trait [Term] id: VT:0001671 name: vitamin absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in any of a group of organic substances, present in food, that are essential to normal metabolism." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001666 ! nutrient absorption trait [Term] id: VT:0001674 name: germ layer development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the primary cellular layers from which the organs and tissues develop during their formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0001695 ! gastrulation trait [Term] id: VT:0001675 name: ectoderm development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the outermost of the three germ layers during its formation and differentiation during gastrulation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] xref: GO:0001705 "ectoderm formation" is_a: VT:0001674 ! germ layer development trait [Term] id: VT:0001676 name: apical ectodermal ridge development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the multilayered ectodermal region at the tip of a limb bud necessary for the proper development of the underlying mesenchyme." [MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] is_a: VT:0001675 ! ectoderm development trait [Term] id: VT:0001680 name: mesoderm development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the middle of the three germ layers during its formation and differentiation during gastrulation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] xref: GO:0007498 "mesoderm development" is_a: VT:0001674 ! germ layer development trait [Term] id: VT:0001684 name: axial mesoderm development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the portion of the middle primary germ layer, which gives rise to the notochord, during its formation during gastrulation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:9872327] synonym: "chordamesoderm development trait" EXACT [] is_a: VT:0001680 ! mesoderm development trait [Term] id: VT:0001685 name: endoderm development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the innermost of the three germ layers during its formation and differentiation during gastrulation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] xref: GO:0007492 "endoderm development" is_a: VT:0001674 ! germ layer development trait [Term] id: VT:0001688 name: somite development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of any of the paired, metamerically arranged cell masses formed in the embryonic paraxial mesoderm." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0001690 name: somite differentiation initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of the process by which relatively unspecialized cells, tissues, or structures acquire the specialized features of the paired, metamerically arranged cell masses formed in the early embryo." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7789282] synonym: "onset of somite differentiation" EXACT [] is_a: VT:0001688 ! somite development trait [Term] id: VT:0001691 name: somite shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of any of the paired, metamerically arranged cell masses formed in the embryonic paraxial mesoderm." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9015265] is_a: VT:0010122 ! somite morphology trait [Term] id: VT:0001695 name: gastrulation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the development and invagination of the embryonic germ layers." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0001697 name: embryo size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the developing organism before birth." [Dorland:Dorlands Illustrated Medical Dictionary] is_a: VT:0000069 ! embryo trait is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0001700 name: embryo turning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the axial rotation of the germ layers of the embryo during the primitive streak/early somite stage (Mus:E8.5-E9.5) such that the curvature of the entire trunk region is reversed and the neural ectoderm moves to the convex region and the midgut region becomes located in the concave region." [ISBN:0-12-402035-6 "Kaufman, MH The Atlas of Mouse Development", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001695 ! gastrulation trait [Term] id: VT:0001704 name: dorsal-ventral axis patterning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the establishment, maintenance, and elaboration of a pattern along the axis that runs from the front to the back surface of the body." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] synonym: "back-front patterning" EXACT [] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0001705 name: proximal-distal axis patterning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the establishment, maintenance, and elaboration of a pattern in relation to proximity to the trunk or point of origin." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0001706 name: left-right axis patterning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the establishment, maintenance, and elaboration of a pattern in relation to the left and right sides of the body." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0001710 name: amniotic fold morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the involutions of the amnion." [PMID:9171368] is_a: VT:0005029 ! amnion morphology trait [Term] id: VT:0001711 name: placenta morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001711] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0001712 name: placenta development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the organ of metabolic exchange between the fetus and mother." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10779359] synonym: "placental development trait" EXACT [] is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0001716 name: placenta labyrinth morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the structure where embryonic blood vessels are surrounded by trophoblast cells and maternal blood." [MP:0001716] synonym: "labyrinth layer morphology trait" EXACT [] synonym: "placental labyrinth morphology trait" EXACT [] is_a: VT:0001711 ! placenta morphology trait [Term] id: VT:0001718 name: yolk sac morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the highly vascular layer surrounding the yolk of an embryo; it contributes to hematopoietic circulation in mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "exocoelomic cavity morphology trait" EXACT [] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0001721 name: blood island morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the pools of blood in the yolk sac." [PMID:8513497] is_a: VT:0001718 ! yolk sac morphology trait [Term] id: VT:0001722 name: yolk sac color namespace: Trait.ontology def: "The visually perceived hue of the highly vascular layer surrounding the yolk of an embryo; it contributes to hematopoietic circulation in mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001718 ! yolk sac morphology trait [Term] id: VT:0001723 name: yolk sac vascular plexus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the pattern of the primary (honeycomb-like) vasculature of the yolk sac prior to remodeling into a mature vascular network." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0003229 ! yolk sac vasculature morphology trait [Term] id: VT:0001724 name: extraembryonic endoderm morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the endoderm of the extraembryonic tissue that appears prior to gastrulation and performs critical functions during embryogenesis including nutrient uptake and transport from the mother to the embryo." [PMID:10851139] synonym: "visceral endoderm morphology trait" EXACT [] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0001725 name: umbilical cord morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the connective stalk between the fetus and the placenta." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001725] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0001726 name: allantois morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fetal membrane between the chorion and the amnion and yolk sac, which contributes to the formation of the umbilical cord and placental blood vessels in mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7685657] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0001727 name: embryo implantation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the mammalian blastocyst to attach to the endometrium of the uterus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0001731 name: postnatal growth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the increase in size or mass of an organism after birth." [MGI:GO "Definition from the Gene Ontology"] is_a: VT:0100007 ! growth trait [Term] id: VT:0001739 name: secretion by adrenal gland trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances by the suprarenal gland." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001739] is_a: VT:0002909 ! adrenal gland physiology trait [Term] id: VT:0001740 name: epinephrine secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release by the adrenal gland of a catecholamine secreted upon stimulation of the sympathetic nervous system." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", PMID:10357937] synonym: "adrenal epinephrine secretion" EXACT [] synonym: "adrenaline secretion" EXACT [] is_a: VT:0001739 ! secretion by adrenal gland trait [Term] id: VT:0001744 name: corticosterone secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of this adrenocortical steroid that induces glycogen deposition and regulates sodium conservation and potassium secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001739 ! secretion by adrenal gland trait [Term] id: VT:0001746 name: secretion by pituitary trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances from the pituitary." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001746] synonym: "pituitary secretion trait" EXACT [] is_a: VT:0005646 ! pituitary gland physiology trait [Term] id: VT:0001747 name: adrenocorticotropin secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of this pituitary hormone from the pituitary gland that stimulates the secretion of adrenal cortical steroids and induces growth of the adrenal cortex." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "secretion of ACTH" EXACT [] is_a: VT:0001746 ! secretion by pituitary trait [Term] id: VT:0001752 name: secretion by hypothalamus trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances from the hypothalamus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001752] is_a: VT:0005645 ! hypothalamus physiology trait [Term] id: VT:0001753 name: hypothalamus corticotropin-releasing hormone secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of this factor, which stimulates the pituitary to release adrenocorticotropic hormone, from the hypothalamus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "secretion of CRH" EXACT [] is_a: VT:0001752 ! secretion by hypothalamus trait [Term] id: VT:0001754 name: blood corticotropin-releasing hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume of CRH in whole blood, serum, or plasma; CRH is normally released by the hypothalamus and stimulates the release of corticotropin by the anterior pituitary gland." [PMID:10471508] synonym: "circulating corticotropin-releasing hormone level" RELATED [] synonym: "serum level of corticotropin-releasing hormone" RELATED [] synonym: "serum level of CRH" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0001756 name: urine production trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the production and excretion of the fluid and dissolved substances excreted by the kidneys." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0005502 ! urinary system physiology trait [Term] id: VT:0001757 name: urine molecular composition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the proportions of proteins, minerals, nutrients, gases, or other substances in the fluid and dissolved substances that is excreted by the kidneys." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] is_a: VT:0000056 ! urine trait [Term] id: VT:0001758 name: urine glucose amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of the monosaccharide that is the end product of carbohydrate digestion." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:MS] synonym: "urine glucose level" EXACT [] is_a: VT:0001757 ! urine molecular composition trait [Term] id: VT:0001764 name: homeostasis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to a state of equilibrium in the body with respect to various functions and to chemical composition of the fluids and tissues." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: GO:0042592 "homeostatic process" is_a: VT:0010454 ! organism trait [Term] id: VT:0001765 name: ion homeostasis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to any process involved in the maintenance of an internal equilibrium of ions within an organism or cell." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0050801 "ion homeostasis" is_a: VT:0015077 ! molecule homeostasis trait [Term] id: VT:0001770 name: iron amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of this metallic element that normally occurs in the heme of hemoglobin, myoglobin, transferrin, ferritin, and iron-containing porphyrins; it is an essential component of enzymes such as catalase, peroxidase, and various cytochromes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000192 ! mineral amount is_a: VT:0005637 ! iron homeostasis trait [Term] id: VT:0001771 name: blood magnesium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this bioelement." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "magnesium level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0001775 name: selenium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of this essential trace element, required for glutathione peroxidase and other enzymes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000192 ! mineral amount [Term] id: VT:0001776 name: blood sodium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this metallic element, the most plentiful extracellular ion in the body and the principal determinant of extracellular fluid volume." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood sodium level" RELATED [] synonym: "circulating sodium level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0001777 name: body temperature regulation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the control of body heat." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "temperature regulation" EXACT [] synonym: "thermoregulation" EXACT [] is_a: VT:0005535 ! body temperature trait [Term] id: VT:0001778 name: brown adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the thermogenic form of adipose capable of rapid liberation of energy; composed of brown adipocytes, which contain multiple small droplets of triglycerides and a high number of mitochondria." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001778] synonym: "brown adipose tissue amount" EXACT [] synonym: "brown fat amount" EXACT [] synonym: "brown fat weight" RELATED [] is_a: VT:0002971 ! brown adipose morphology trait is_a: VT:0005452 ! adipose amount [Term] id: VT:0001781 name: white adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "white adipose tissue amount" EXACT [] synonym: "white fat amount" EXACT [] synonym: "white fat weight" RELATED [] is_a: VT:0002970 ! white adipose morphology trait is_a: VT:0005452 ! adipose amount [Term] id: VT:0001784 name: fluid regulation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the control of intracellular and/or extracellular fluid." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] xref: GO:0050878 "regulation of body fluid levels" is_a: VT:0001764 ! homeostasis trait [Term] id: VT:0001790 name: immune system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organs or cells associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: GO:0006955 is_a: VT:1000783 ! immune system trait [Term] id: VT:0001798 name: macrophage phagocytosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to he ability of macrophage phagocytic cells to internalize particulate matter." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002419 ! innate immune response trait is_a: VT:0002451 ! macrophage physiology trait [Term] id: VT:0001805 name: blood immunoglobulin G amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the major antibody for antitoxins, viruses, and bacteria; also activates complement." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "IgG concentration" RELATED [] synonym: "IgG level" RELATED [] synonym: "plasma immunoglobulin G amount" NARROW [] synonym: "serum level of immunoglobulin G" RELATED [] is_a: VT:0002460 ! blood immunoglobulin amount [Term] id: VT:0001807 name: blood immunoglobulin A amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the principal immunoglobulin in exocrine secretions; prevents pathogens from invading the body through the mucosa of the gastrointestinal, pulmonary, and genitourinary tracts." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "IgA concentration" RELATED [] synonym: "IgA level" RELATED [] synonym: "plasma immuglobulin A amount" NARROW [] is_a: VT:0002460 ! blood immunoglobulin amount [Term] id: VT:0001819 name: immune system cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the cells of the immune system." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] xref: ATOL:0000385 is_a: VT:0001790 ! immune system physiology trait [Term] id: VT:0001828 name: T cell activation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] comment: This process requires recognition of a foreign peptide fragment bound to self-MHC and the simultaneous delivery of a co-stimulatory signal by an antigen presenting cell; it results in the clonal expansion of naive T cells and their differentiation into armed effector cells. synonym: "T-cell activation" EXACT [] xref: ATOL:0000386 xref: GO:0042110 "T cell activation" is_a: VT:0002145 ! T cell development trait is_a: VT:0002444 ! T cell physiology trait [Term] id: VT:0001830 name: effector T cell quantity namespace: Trait.ontology def: "The proportion or numbers of the set of T lymphocytes that are able to respond immediately upon contact with cells bearing the appropriate peptide:MHC complex for the cell." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "effector T lymphocyte number" EXACT [] synonym: "effector T-cell number" EXACT [] synonym: "effector T-lymphocyte number" EXACT [] is_a: VT:0002435 ! effector T cell morphology trait is_a: VT:0006387 ! T cell quantity [Term] id: VT:0001835 name: antigen presentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex." [GO:0019882 "antigen processing and presentation"] is_a: VT:0001790 ! immune system physiology trait [Term] id: VT:0001874 name: epidermis stratum spinosum cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the layer between the stratum granulosum and stratum basale in the epidermis." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "stratum spinosum cell number" EXACT [] is_a: VT:0001236 ! epidermis stratum spinosum morphology trait [Term] id: VT:0001879 name: lymphatic vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the network of vessels which carries lymph around the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:tc "Teresa Chu, Mouse Genome Informatics Curator"] synonym: "lymphatic system morphology trait" BROAD [] is_a: VT:0000685 ! immune system morphology trait is_a: VT:0010071 ! lymphatic system morphology trait [Term] id: VT:0001881 name: mammary gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the milk-producing glands in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "mammary gland function" EXACT [] xref: ATOL:0000388 is_a: VT:0002164 ! gland physiology trait is_a: VT:0003699 ! female reproductive system physiology trait [Term] id: VT:0001882 name: lactation trait namespace: Trait.ontology def: "Any measurable characteristic related to the production of milk from the mammary gland." [PMID:9845363] is_a: VT:0001881 ! mammary gland physiology trait [Term] id: VT:0001884 name: mammary alveoli morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sac-like structure of the mammary gland that synthesizes and secretes milk after pregnancy." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000390 is_a: VT:0000627 ! mammary gland morphology trait [Term] id: VT:0001885 name: mammary duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tubular structure running from the nipple to the alveoli clusters in the mammary gland." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000391 is_a: VT:0000627 ! mammary gland morphology trait [Term] id: VT:0001895 name: hippocampus physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the deep lying structure of the cerebrum involved with memory storage and spatial navigation." [ISBN:0-12-402035-6 "Kaufman, MH The Atlas of Mouse Development"] is_a: VT:0015058 ! brain physiology trait [Term] id: VT:0001898 name: long-term synaptic depression trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the persistent activity-dependent decrease in synaptic efficacy between neurons, often following slow, weak stimulation of neurons." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "LTD" EXACT [] is_a: VT:0002915 ! synaptic depression trait [Term] id: VT:0001900 name: synaptic plasticity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the nervous system to change its reactivity as a result of successive activations." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0001905 name: nervous system dopamine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a nervous system tissue of this catecholamine neurotransmitter, derived from tyrosine and the precursor to norepinephrine and epinephrine." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "dopaminergic level" BROAD [] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0001907 name: cerebellum physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the portion of the brain in the back of the head between the cerebrum and the pons, that controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cerebellar function" NARROW [] is_a: VT:0015058 ! brain physiology trait [Term] id: VT:0001908 name: somatosensory cortex physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the area of the parietal lobe that lies posterior to the central sulcus and is concerned with receiving and processing general sensations from the body surface." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003876 ! cerebrum physiology trait [Term] id: VT:0001909 name: NMDA receptor mediated synaptic activity in barrel cortex namespace: Trait.ontology def: "The degree of function or response of excitatory synaptic current in the barrel cortex." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002888 ! NMDA-mediated synaptic current trait [Term] id: VT:0001911 name: cerebrospinal fluid production trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the secretion of the fluid that fills the ventricles and other cavities of the brain and spinal cord." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0001919 name: reproductive system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organs associated with producing offspring." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0005389 ! reproductive system trait [Term] id: VT:0001922 name: male fertility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of a male to produce live offspring." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10725924] xref: ATOL:0001721 is_a: VT:0003698 ! male reproductive system physiology trait [Term] id: VT:0001923 name: female fertility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of a female to produce live offspring." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10656767] synonym: "conception rate" RELATED [] synonym: "non-return rate" RELATED [] synonym: "pregnancy rate" RELATED [] xref: ATOL:0001719 is_a: VT:0003699 ! female reproductive system physiology trait [Term] id: VT:0001927 name: estrous cycle trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the sexual cycle of female animals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:8689683] synonym: "oestrous cycle" EXACT [] xref: ATOL:0000969 is_a: VT:0003699 ! female reproductive system physiology trait [Term] id: VT:0001928 name: ovulation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the release of an ovum from a rupturing Graafian follicle, normally regulated by a surge in luteinizing hormone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001928] xref: ATOL:0000392 is_a: VT:0001927 ! estrous cycle trait [Term] id: VT:0001929 name: gametogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation or differentiation of germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:8843193] is_a: VT:0001919 ! reproductive system physiology trait [Term] id: VT:0001930 name: meiosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of nuclear division that results in gametes with one half the normal chromosome number of the original cell." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001929 ! gametogenesis trait [Term] id: VT:0001931 name: oogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of female germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:8849725] is_a: VT:0001929 ! gametogenesis trait [Term] id: VT:0001932 name: spermiogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which immature spermatids become mature sperm." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] xref: ATOL:0000394 is_a: VT:0001156 ! spermatogenesis trait [Term] id: VT:0001933 name: single birth offspring quantity namespace: Trait.ontology def: "The proportion or number of offspring produced from a single pregnancy (mammals) or ovulation (fish) or nesting (birds)" [ATOL:0001720] synonym: "litter size" EXACT [] xref: ATOL:0001720 is_a: VT:1000189 ! offspring quantity [Term] id: VT:0001938 name: time of sexual maturation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the time of maturation of the sexual organs." [PMID:10731669] is_a: VT:0002212 ! secondary sex determination trait [Term] id: VT:0001940 name: testes cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the testicles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "testes cell number" EXACT [] synonym: "testicular cell number" EXACT [] xref: ATOL:0000396 is_a: VT:0001146 ! testes morphology trait [Term] id: VT:0001942 name: lung capacity namespace: Trait.ontology def: "The volume of or amount of air contained in the lungs at various points of the respiratory cycle." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001943 ! respiration trait [Term] id: VT:0001943 name: respiration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the movement of gases into and out of the lung." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002133 ! respiratory system physiology trait [Term] id: VT:0001944 name: pancreas morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ that secretes pancreatic juice into the duodenum and secretes glucagon and insulin into the bloodstream." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001944] synonym: "pancreas gland morphology trait" EXACT [] xref: ATOL:0000397 is_a: VT:0000050 ! pancreas/salivary gland morphology trait is_a: VT:0002163 ! gland morphology trait [Term] id: VT:0001945 name: bronchoconstriction trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the reduction in the caliber of the bronchus or bronchi." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002314 ! respiratory mechanics trait [Term] id: VT:0001947 name: mucociliary clearance trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the rate of ciliary and secretory activity of the respiratory submucosal glands." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002314 ! respiratory mechanics trait [Term] id: VT:0001961 name: reflex trait namespace: Trait.ontology def: "any measurable or observable characteristic related to an involuntary response to a peripheral stimulus" [MGI:MP, MGI:smb] synonym: "reflexes" EXACT [] is_a: VT:0002067 ! sensation behavior trait is_a: VT:0003492 ! involuntary movement trait [Term] id: VT:0001964 name: auditory threshold namespace: Trait.ontology def: "The point at which one may first detect auditory signals at given frequencies." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_a: VT:0002104 ! hearing physiology trait [Term] id: VT:0001968 name: tactile sensory behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the behavior of an organism in response to a tactile stimulus" [MGI:smb] is_a: VT:0002067 ! sensation behavior trait [Term] id: VT:0001970 name: pain threshold namespace: Trait.ontology def: "The point at which stimulation first elicits the perception of pain." [MP:0001979] is_a: VT:0015100 ! nociception system physiology trait [Term] id: VT:0001983 name: olfactory system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function or processes in the organs involved in smell." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0005394 ! olfactory system trait [Term] id: VT:0001984 name: olfaction trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal; olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:GO "Definition from the Gene Ontology"] xref: GO:0007608 "sensory perception of smell" is_a: VT:0001983 ! olfactory system physiology trait [Term] id: VT:0001985 name: gustatory system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to a function of or process in the organs involved in the perception of taste." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "taste physiology trait" EXACT [] synonym: "taste response" EXACT [] is_a: VT:0015065 ! gustatory system trait [Term] id: VT:0001986 name: taste sensitivity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to perceive a particular flavor or suggestion of something imparting a flavor by the chemoreceptors of the gustatory system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000781 xref: GO:0050909 "sensory perception of taste" is_a: VT:0001985 ! gustatory system physiology trait [Term] id: VT:0002001 name: visual acuity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the sharpness or clarity of vision." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002090 ! vision trait [Term] id: VT:0002059 name: seminal gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one of the two folded, sac shaped glands that is a diverticulum of the ductus deferens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "seminal vesicles morphology trait" EXACT [] xref: ATOL:0000398 is_a: VT:0000653 ! sex gland morphology trait is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0002062 name: conditioning behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to change the frequency or form of a behavior as a result of the influence of the environment" [MGI:MP, MGI:smb] is_a: VT:0002063 ! learning/memory/conditioning trait [Term] id: VT:0002063 name: learning/memory/conditioning trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability to receive, store, process or recall informational stimuli" [MGI:MP, MGI:smb] subset: slim_pig is_a: VT:0015002 ! interscapular fat pad morphology trait [Term] id: VT:0002067 name: sensation behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to behavior of an organism in response to a sensory stimulus; a sensory stimulus is any change in the external environment that is perceived and processed by any of the faculties by which outside stimuli are perceived" [MGI:smb] is_a: VT:0015002 ! interscapular fat pad morphology trait [Term] id: VT:0002068 name: parental behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the behavior of animals towards offspring" [MGI:csmith, MP:0002068] comment: pslim term synonym: "neurological/behavioral: parental behavior anomalies" EXACT [] is_a: VT:0015008 ! total fat pad mass [Term] id: VT:0002069 name: consumption behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the consumption of solids or liquids" [MGI:smb] comment: pslim term subset: slim_cattle subset: slim_chkn subset: slim_pig is_a: VT:0010442 ! behavior trait [Term] id: VT:0002073 name: hair physiology trait namespace: Trait.ontology def: "OBSOLETE. The function of or processes involved in the amount, growth or development of the filamentous appendages growing out of the skin, consisting primarily of keratin, and comprising a cylindrical shaft and a root which is contained in a follicle.\nconsider: VT:4000007" [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed.] comment: pslim term is_obsolete: true [Term] id: VT:0002074 name: hair texture trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the visual or tactile surface characteristics of the fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: pslim term is_a: VT:0000367 ! coat/hair morphology trait [Term] id: VT:0002076 name: hair follicle morphology trait namespace: Trait.ontology def: "Any measurable characteristic related to the shape, structure, color, or pattern of the tubular invaginations of the epidermis from which the hair shaft develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: pslim term is_a: VT:0010007 ! skin adnexa morphology trait [Term] id: VT:0002084 name: developmental patterning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process in the embryo that results in the creation of defined areas or spaces to which cells respond and are eventually instructed to differentiate." [MGI:GO "Definition from the Gene Ontology"] comment: phenoslim term is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0002085 name: embryonic cell/tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any cell type or tissue in the embryo." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: phenoslim term is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0002086 name: extraembryonic tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the membranes involved with embryonic protection and nutrition." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002086] comment: Phenoslim term is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0002090 name: vision trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes involved with the ability to see." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: phenoslim term synonym: "visual ability" EXACT [] is_a: VT:0005253 ! eye physiology trait [Term] id: VT:0002092 name: eye morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ of vision and its supporting structures." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0003743 ! facial morphology trait is_a: VT:0015066 ! surface structure morphology trait [Term] id: VT:0002093 name: cornea/lens morphology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the shape, structure, color or pattern of the lens or cornea.\nconsider: VT:0001312 or VT:0001303" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0002095 name: skin pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0002096 ! skin morphology trait [Term] id: VT:0002096 name: skin morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0100020 ! integumentary system morphology trait [Term] id: VT:0002098 name: vibrissa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the stiff hairs projecting from the face, which act as touch receptors." [MeSH:D014738 "vibrissae", MP:0002098] comment: pslim term synonym: "vibrissae morphology trait" RELATED [] synonym: "whisker morphology trait" EXACT [] is_a: VT:0000432 ! head morphology trait is_a: VT:0010007 ! skin adnexa morphology trait [Term] id: VT:0002100 name: tooth morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone-like structures embedded in the jaw and used for mastication." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0000452 ! mouth morphology trait [Term] id: VT:0002102 name: ear morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ of hearing, responsible for maintaining equilibrium as well as sensing sound and divided in mammals into the external ear, the middle ear, and the inner ear." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0000432 ! head morphology trait is_a: VT:0015066 ! surface structure morphology trait [Term] id: VT:0002104 name: hearing physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes involved in the perception of sound." [MP:0001963] comment: pslim term synonym: "auditory perception" EXACT [] synonym: "auditory physiology trait" RELATED [] xref: GO:0007605 "sensory perception of sound" is_a: VT:0003633 ! nervous system physiology trait is_a: VT:0003878 ! ear physiology trait is_a: VT:0015093 ! hearing system trait [Term] id: VT:0002106 name: muscular system physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] comment: former pslim term is_a: VT:0005369 ! muscular system trait [Term] id: VT:0002108 name: muscular system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] comment: pslim term is_a: VT:0005369 ! muscular system trait [Term] id: VT:0002109 name: limb morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the projecting, paired, jointed appendages of the body used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term synonym: "limb/digit morphology trait" RELATED [] is_a: VT:0015071 ! appendage morphology trait [Term] id: VT:0002110 name: digit morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fingers or toes, or their corresponding parts in other vertebrates." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait [Term] id: VT:0002111 name: tail morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the appendage at the caudal end of the vertebral column in some vertebrates including remnant structures in species that normally lack a tail." [MP:0002111] comment: pslim term is_a: VT:0015071 ! appendage morphology trait [Term] id: VT:0002114 name: axial skeleton morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the craniofacial, vertebral, rib, or sternal bones." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0010003 ! bone morphology trait [Term] id: VT:0002115 name: skeleton extremities morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bony framework of the limb, autopod, tail, or fin." [MP:0002115] comment: pslim term is_a: VT:0010091 ! appendicular skeleton morphology trait is_a: VT:0015071 ! appendage morphology trait [Term] id: VT:0002116 name: craniofacial bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bones of the face and/or cranium." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002116] comment: pslim term synonym: "cranial/facial bone morphology trait" EXACT [] is_a: VT:0000428 ! craniofacial morphology trait is_a: VT:0002114 ! axial skeleton morphology trait [Term] id: VT:0002118 name: lipid homeostasis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the internal equilibrium of lipid within an organism or cell." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: GO:0055088 "lipid homeostasis" is_a: VT:0015077 ! molecule homeostasis trait [Term] id: VT:0002121 name: metabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the processes that cause many of the chemical changes in living organisms, including anabolism and catabolism; metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000954 xref: GO:0008152 "metabolic process" xref: MP:0005266 is_a: VT:0010454 ! organism trait [Term] id: VT:0002123 name: hematopoiesis trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the development of blood cells; in the fetus, they develop in the aorta, genital ridge and mesonephros region and in adults, in the bone marrow and lymphatic tissues." [MP:0002123] comment: pslim term synonym: "blood development trait " EXACT [] synonym: "definitive hematopoiesis" EXACT [] synonym: "hematogenesis" EXACT [] synonym: "hematosis" EXACT [] synonym: "hemogenesis" EXACT [] synonym: "hemopoiesis" EXACT [] synonym: "sanguification" EXACT [] is_a: VT:0010182 ! blood cell development trait [Term] id: VT:0002124 name: red blood cell trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the shape, structure, color, pattern or maintenance of erythrocytes or oxygen-transporting material in the blood.\nconsider: VT:0002447" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:MP "Definition from the Mammalian Phenotype ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] comment: pslim term synonym: "erythrocyte" EXACT [] is_obsolete: true [Term] id: VT:0002127 name: cardiovascular system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the heart or vasculature." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0100016 ! circulatory system morphology trait [Term] id: VT:0002128 name: blood circulation trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the flow of blood within the body.\nconsider: VT:0000153 or VT:0000182" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] comment: pslim term is_obsolete: true [Term] id: VT:0002132 name: respiratory system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the system responsible for the exchange of oxygen and carbon dioxide with the environment." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0005388 ! respiratory system trait [Term] id: VT:0002133 name: respiratory system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the system responsible for the exchange of oxygen and carbon dioxide with the environment." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term synonym: "respiratory system function" EXACT [] is_a: VT:0005388 ! respiratory system trait [Term] id: VT:0002135 name: kidney morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: pslim term synonym: "renal morphology trait" EXACT [] is_a: VT:0000516 ! urinary system morphology trait [Term] id: VT:0002136 name: kidney physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: pslim term synonym: "kidney function" EXACT [] is_a: VT:0005502 ! urinary system physiology trait [Term] id: VT:0002138 name: hepatobiliary system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the tissues of the liver, gall bladder, or bile ducts." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:DHM "Diane Munzenmaier, Rat Genome Database"] comment: pslim term synonym: "hepatic system morphology trait" EXACT [] is_a: VT:1000776 ! alimentary system trait [Term] id: VT:0002139 name: hepatobiliary system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the liver, gall bladder, or bile ducts." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:DHM "Diane Munzenmaier, Rat Genome Database"] comment: pslim term synonym: "hepatic system physiology trait" EXACT [] is_a: VT:1000776 ! alimentary system trait [Term] id: VT:0002144 name: B cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to morphology or physiology during the formation or differentiation of mature B cells, and/or accumulation of B cell precursors." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "B cell differentiation" EXACT [] synonym: "B cell maturation" EXACT [] synonym: "B lymphocyte development trait" EXACT [] synonym: "B lymphocyte maturation" EXACT [] synonym: "B-cell development trait" EXACT [] synonym: "B-cell maturation" EXACT [] xref: MGI:2173604 is_a: VT:0002401 ! lymphopoiesis trait [Term] id: VT:0002145 name: T cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to morphology or physiology during the formation or differentiation of mature T cells, and/or accumulation of T cell precursors." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "T cell differentiation" EXACT [] synonym: "T cell maturation" EXACT [] synonym: "T lymphocyte development trait" EXACT [] synonym: "T-cell development trait" EXACT [] synonym: "T-cell maturation" EXACT [] synonym: "thymocyte development trait" EXACT [] xref: MGI:2173605 is_a: VT:0002401 ! lymphopoiesis trait [Term] id: VT:0002151 name: neural tube morphology/development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, pattern, or morphology or physiology during formation and differentiation of the embryonic neural tube." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0002152 name: brain morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)." [http://cancerweb.ncl.ac.uk, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0002160 name: reproductive system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the organs or tissues involved in the production of offspring." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] comment: pslim term synonym: "reproductive anatomy" EXACT [] is_a: VT:0005389 ! reproductive system trait [Term] id: VT:0002161 name: female fecundity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the production of offspring." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term is_a: VT:0003699 ! female reproductive system physiology trait [Term] id: VT:0002163 name: gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of an organized aggregation of cells functioning as a secretory or excretory organ." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: pslim term is_a: VT:1000782 ! endocrine/exocrine system trait [Term] id: VT:0002164 name: gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in an organized aggregation of cells functioning as a secretory or excretory organ." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: pslim term synonym: "endocrine gland function" EXACT [] synonym: "endocrine system physiology trait" EXACT [] synonym: "gland function" EXACT [] is_a: VT:1000782 ! endocrine/exocrine system trait [Term] id: VT:0002174 name: gastrulation movement trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the migration of embryonic cells during the development and invagination of the primary germ layers." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:9885251] is_a: VT:0001695 ! gastrulation trait [Term] id: VT:0002176 name: brain mass namespace: Trait.ontology def: "The amount of matter in the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)." [http://cancerweb.ncl.ac.uk, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "brain weight" RELATED [] is_a: VT:0000771 ! brain size trait [Term] id: VT:0002177 name: outer ear morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the components of the auricles or external acoustic meatus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002177] synonym: "pinna morphology trait" EXACT [] is_a: VT:0002102 ! ear morphology trait [Term] id: VT:0002181 name: brain cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any or all brain cell types." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0002182 name: astrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large neuroglia cells of nervous tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "astroglia morphology trait" EXACT [] is_a: VT:0000952 ! central nervous system glial cell morphology trait [Term] id: VT:0002184 name: innervation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement, distribution or supply of the connection of nerve fibers to a target tissue or cell." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0002187 name: fibula morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lateral and smaller bone of the lower/hind limb." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0010105 ! hindlimb long bone morphology trait [Term] id: VT:0002191 name: artery morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the blood vessels that carry blood away from the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: MP:0002191 is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0002199 name: brain commissure morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002199] synonym: "commissure morphology trait" EXACT [] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0002200 name: brain ventricle/choroid plexus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cavities of the brain filled with cerebrospinal fluid, or the associated fringe of their tela choroidea." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] comment: suggested from TGMC synonym: "choroid/ventricle morphology trait" EXACT [] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0002204 name: neurotransmitter amount namespace: Trait.ontology def: "The proportion, quantity, or volume of endogenous signaling molecules secreted by neurons that alter the behavior of neurons or effector cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0003635 ! synaptic transmission trait [Term] id: VT:0002206 name: CNS synaptic transmission trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the communication from a neuron to a target across a synapse in the central nervous system." [MP:0002206] synonym: "central nervous system synaptic transmission" EXACT [] synonym: "CNS neurotransmission" EXACT [] is_a: VT:0003635 ! synaptic transmission trait [Term] id: VT:0002207 name: long-term potentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the persistent robust synaptic response induced by synchronous stimulation of pre- and postsynaptic cells." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "LTP" EXACT [] synonym: "LTP: CA1 region" EXACT [] synonym: "LTP: CA3 region" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002208 name: germ cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the germ cell, that is, any of the reproductive (generative) cells of a multicellular organism, whether they are undifferentiated or fully differentiated." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "gamete morphology trait" EXACT [] is_a: VT:0002160 ! reproductive system morphology trait [Term] id: VT:0002209 name: germ cell quanitity namespace: Trait.ontology def: "Any measurable characteristic related to the proportion or numbers of any of the reproductive (generative) cells of a multicellular organism, whether they are undifferentiated or fully differentiated." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "germ cell number" EXACT [] is_a: VT:0002208 ! germ cell morphology trait [Term] id: VT:0002210 name: sex determination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to primary or secondary sexual development or characteristics." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "sexual differentiation" EXACT [] is_a: VT:0003936 ! reproductive system development trait [Term] id: VT:0002211 name: primary sex determination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the development of the organs and structures involved in reproduction." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] synonym: "gonad development trait" EXACT [] is_a: VT:0002210 ! sex determination trait [Term] id: VT:0002212 name: secondary sex determination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the appearance and development of traits, other than the sex organs, that distinguish the sexes." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002210 ! sex determination trait [Term] id: VT:0002216 name: seminiferous tubule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tubules in the testes where spermatogenesis occurs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000406 is_a: VT:0001146 ! testes morphology trait [Term] id: VT:0002221 name: immune system organ size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the organs associated with the body's defense against foreign organisms or substances and aberrant native cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "lymph organ size trait" RELATED [] is_a: VT:0002722 ! immune system organ morphology trait [Term] id: VT:0002224 name: spleen size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the organ that functions to filter blood and to store red corpuscles and platelets." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "splenic size trait" EXACT [] is_a: VT:0000689 ! spleen morphology trait is_a: VT:0002221 ! immune system organ size trait [Term] id: VT:0002227 name: spleen capsule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the connective tissue that surrounds the spleen." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "splenic capsule morphology trait" EXACT [] is_a: VT:0000689 ! spleen morphology trait [Term] id: VT:0002228 name: spleen trabecular vein morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one of the veins that feeds the splenic vein." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000689 ! spleen morphology trait [Term] id: VT:0002230 name: primitive streak development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the midline ridge of embryonic epiblast that later develops into mesoderm and endoderm." [ISBN:0-12-402035-6 "Kaufman, MH The Atlas of Mouse Development", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "germinal streak formation" EXACT [] synonym: "primitive streak formation" EXACT [] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0002231 name: primitive streak morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm." [ISBN:0-12-402035-6 "Kaufman, MH The Atlas of Mouse Development", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "germinal streak morphology trait" EXACT [] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0002233 name: nose morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organ that is specialized for smell and is part of the respiratory system." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002132 ! respiratory system morphology trait is_a: VT:0003743 ! facial morphology trait is_a: VT:0015066 ! surface structure morphology trait [Term] id: VT:0002234 name: pharynx morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the passage between the mouth and the posterior nares and the larynx and esophagus." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002132 ! respiratory system morphology trait [Term] id: VT:0002235 name: external nares morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anterior opening to the nasal cavity." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "anterior nares morphology trait" EXACT [] synonym: "nostril morphology trait" EXACT [] is_a: VT:0002233 ! nose morphology trait [Term] id: VT:0002236 name: internal nares morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the opening of the nasal cavity into the nasal pharynx." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "choanae morphology trait" EXACT [] synonym: "posterior nares morphology trait" EXACT [] is_a: VT:0002233 ! nose morphology trait [Term] id: VT:0002237 name: nasal cavity morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the respiratory tract that extends from the nares to the pharynx; the nasal cavity is lined with ciliated mucosa." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002233 ! nose morphology trait [Term] id: VT:0002238 name: nasal mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mucous membrane that lines the nasal cavity." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "nasal epithelium morphology trait" EXACT [] synonym: "nasal mucous membrane morphology trait" EXACT [] is_a: VT:0002233 ! nose morphology trait is_a: VT:0002277 ! respiratory mucosa morphology trait [Term] id: VT:0002239 name: nasal septum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the structure that separates the two nasal cavities." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002233 ! nose morphology trait [Term] id: VT:0002240 name: paranasal sinus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of these extensions of the nasal cavity." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002233 ! nose morphology trait [Term] id: VT:0002241 name: laryngeal mucosa goblet cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial cells lining the larynx, which produce mucins." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002261 ! laryngeal mucosa morphology trait [Term] id: VT:0002242 name: olfactory mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the nasal mucosa that contains the olfactory sensory endings." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002238 ! nasal mucosa morphology trait [Term] id: VT:0002243 name: vomeronasal organ morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the specialized portion of the nasal septum that is composed of chemosensitive cells and lies anteriorly in the nasal cavity." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: this organ is believed to function in sensing pheromones is_a: VT:0002239 ! nasal septum morphology trait is_a: VT:0005499 ! olfactory system morphology trait [Term] id: VT:0002244 name: turbinated bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the small curved bones that extend horizontally along the lateral wall of the nasal passage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002244] synonym: "nasal concha morphology trait" EXACT [] synonym: "turbinate morphology trait" EXACT [] is_a: VT:0002233 ! nose morphology trait is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0002245 name: ethmoid sinus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of these small spaces found within the ethmoid bone." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002240 ! paranasal sinus morphology trait [Term] id: VT:0002246 name: frontal sinus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of these paired air spaces within the frontal bone." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002240 ! paranasal sinus morphology trait [Term] id: VT:0002248 name: sphenoid sinus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the air space located within the sphenoid bone, and which opens to the highest meatus of the nasal cavity." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002240 ! paranasal sinus morphology trait [Term] id: VT:0002249 name: larynx morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the most superior portion of the respiratory tract." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: the larynx is specialized for vocalization and is bounded above by the pharynx and oral cavity, and below byt the first tracheal ring is_a: VT:0002132 ! respiratory system morphology trait [Term] id: VT:0002250 name: hypopharynx morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the pharynx that lies below the upper edge of the epiglottis and opens into the larynx and the esophagus." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002234 ! pharynx morphology trait [Term] id: VT:0002251 name: nasopharynx morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the section of the pharynx that lies above the soft palate." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002234 ! pharynx morphology trait [Term] id: VT:0002252 name: oropharynx morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the pharynx that lies between the soft palate and the upper edge of the epiglottis." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002234 ! pharynx morphology trait [Term] id: VT:0002253 name: pharyngeal muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the muscles of the pharynx, the inferior, middle and superior constrictors, palatopharyngeus, salpingopharyngeus, and stylopharyngeus." [MeSH:D010609 "pharyngeal muscles", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000759 ! skeletal muscle morphology trait is_a: VT:0002234 ! pharynx morphology trait [Term] id: VT:0002255 name: glottis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the vocal apparatus of the larynx, which includes the vocal cords and the opening between them." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002249 ! larynx morphology trait [Term] id: VT:0002256 name: laryngeal cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cartilaginous structures that support the larynx." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000163 ! cartilage morphology trait is_a: VT:0002249 ! larynx morphology trait [Term] id: VT:0002257 name: arytenoid cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired triangular cartilages located postlaterally at the level of the thyroid cartilage." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: the vocal cords are attached to the arytenoid cartilages; their movement facilitates the vibration of the vocal cords is_a: VT:0002256 ! laryngeal cartilage morphology trait [Term] id: VT:0002258 name: cricoid cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the most inferior of the laryngeal cartilages." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002256 ! laryngeal cartilage morphology trait [Term] id: VT:0002259 name: epiglottis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002256 ! laryngeal cartilage morphology trait [Term] id: VT:0002260 name: thyroid cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the largest of the laryngeal cartilages." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: the thyroid cartilage consists of two fused plates; their point of fusion is the "Adam's apple" is_a: VT:0002256 ! laryngeal cartilage morphology trait [Term] id: VT:0002261 name: laryngeal mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002249 ! larynx morphology trait is_a: VT:0002277 ! respiratory mucosa morphology trait [Term] id: VT:0002262 name: nasal mucosa goblet cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells lining the nasal epithelium that produce and secrete mucins." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "nasal mucous membrane morphology trait" BROAD [] is_a: VT:0002238 ! nasal mucosa morphology trait [Term] id: VT:0002263 name: laryngeal muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscles associated with the larynx." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000759 ! skeletal muscle morphology trait is_a: VT:0002249 ! larynx morphology trait [Term] id: VT:0002264 name: bronchus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the upper conducting airways of the lung; these airways arise from the terminus of the trachea." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: the bronchi contain both cartilage and mucous glands in their walls is_a: VT:0004391 ! respiratory conducting tube morphology trait [Term] id: VT:0002265 name: left major bronchus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the conducting airway leading to the left lobe of the lungs." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition"] is_a: VT:0002264 ! bronchus morphology trait [Term] id: VT:0002266 name: right major bronchus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the conducting airway leading to the right lobe of the lungs." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition"] is_a: VT:0002264 ! bronchus morphology trait [Term] id: VT:0002267 name: bronchiole morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the conducting airway of the lungs found terminal to the bronchi; these structures contain neither cartilage nor mucous-secreting glands; the epithelium of the bronchioles becomes thinner with each branching." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0004391 ! respiratory conducting tube morphology trait [Term] id: VT:0002268 name: terminal bronchiole morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the last conducting structure of non-respiratory bronchioles; after this point, the airways have alveoli in their walls." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition"] is_a: VT:0002267 ! bronchiole morphology trait [Term] id: VT:0002270 name: respiratory alveoli morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small sac-like dilations of the distal airspace of the lung; they are present along the walls of the alveolar sacs, alveolar ducts and terminal bronchioles; gas exchange of oxygen and carbon dioxide between alveolar air and blood in the pulmonary capillaries takes place across the cell walls." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "alveoli morphology trait" EXACT [] is_a: VT:0001175 ! lung morphology trait [Term] id: VT:0002271 name: respiratory alveolar duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the respiratory conducting tubes distal to the respiratory bronchiole that lead to the alveolar sacs and the alveoli." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0004391 ! respiratory conducting tube morphology trait [Term] id: VT:0002272 name: nervous system electrophysiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the functions of or processes in the nervous system as they relate to electrical phenomena." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0002273 name: respiratory alveolar epithelial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells lining the alveoli." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "lung epithelial cell morphology trait" EXACT [] is_a: VT:0002270 ! respiratory alveoli morphology trait [Term] id: VT:0002274 name: type I pneumocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial cells lining the alveoli through which gas exchange occurs; these are thin cells with a large surface area." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "type I cell morphology trait" EXACT [] is_a: VT:0002273 ! respiratory alveolar epithelial cell morphology trait [Term] id: VT:0002275 name: type II pneumocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial cells lining the alveoli that produce surfactant." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "type II cell morphology trait" EXACT [] is_a: VT:0002273 ! respiratory alveolar epithelial cell morphology trait [Term] id: VT:0002276 name: lung interstitium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lung tissue, but not including the conducting airways (bronchi, bronchioles, alveoli)." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "pulmonary interstitium morphology trait" EXACT [] is_a: VT:0001175 ! lung morphology trait [Term] id: VT:0002277 name: respiratory mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mucous membrane lining the respiratory tract." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002132 ! respiratory system morphology trait [Term] id: VT:0002278 name: respiratory muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the muscles involved in breathing." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002132 ! respiratory system morphology trait [Term] id: VT:0002279 name: diaphragm morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the thin musculomebranous barrier that separates the abdominal and thoracic cavities; often used for breathing control." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "diaphragm muscle morphology trait" EXACT [] is_a: VT:0002278 ! respiratory muscle morphology trait is_a: VT:0003358 ! hypaxial muscle morphology trait [Term] id: VT:0002280 name: intercostal muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib." [MeSH:D007366 "intercostal muscles", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002278 ! respiratory muscle morphology trait is_a: VT:0003358 ! hypaxial muscle morphology trait [Term] id: VT:0002281 name: respiratory mucosa goblet cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells of the respiratory epithelial lining that produce and secrete mucins." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002277 ! respiratory mucosa morphology trait [Term] id: VT:0002282 name: trachea morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tube descending from the larynx and branching into the right and left main bronchi." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002132 ! respiratory system morphology trait [Term] id: VT:0002284 name: tracheal smooth muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the unstriated, involuntary muscle lining the tube descending from the larynx and branching into the right and left main bronchi." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000767 ! smooth muscle morphology trait is_a: VT:0002282 ! trachea morphology trait [Term] id: VT:0002285 name: tracheal ciliated epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial lining of the trachea which contains numerous ciliated cells." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002282 ! trachea morphology trait [Term] id: VT:0002292 name: gestation period duration namespace: Trait.ontology def: "The length of time between when a fertilized egg implants in the wall of the uterus and the birth of offspring." [MP:0002292] synonym: "gestation length" EXACT [] synonym: "gestational length" EXACT [] xref: ATOL:0002292 is_a: VT:0003699 ! female reproductive system physiology trait [Term] id: VT:0002295 name: pulmonary blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the circulation of blood through the lungs." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "pulmonary circulation" EXACT [] synonym: "respiratory circulation" EXACT [] is_a: VT:0000255 ! regional blood flow trait is_a: VT:0002133 ! respiratory system physiology trait [Term] id: VT:0002314 name: respiratory mechanics trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the action of the lungs, diaphragm, ribs and chest wall during respiration." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001943 ! respiration trait [Term] id: VT:0002322 name: respiratory transport trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of gas exchange." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001943 ! respiration trait [Term] id: VT:0002324 name: blood-air barrier morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001175 ! lung morphology trait [Term] id: VT:0002327 name: respiratory function trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the processes involved in respiration." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001943 ! respiration trait [Term] id: VT:0002329 name: blood gas amount namespace: Trait.ontology def: "The proportion, quantity, or volume of oxygen and carbon dioxide in whole blood, serum, or plasma." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood gas level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0002332 name: exercise endurance trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to perform during controlled physical activity." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "exercise fitness" EXACT [] is_a: VT:0002899 ! stamina trait [Term] id: VT:0002336 name: pulmonary gas exchange trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the exchange of oxygen and carbon dioxide between the alveolar air and pulmonary capillary blood." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002322 ! respiratory transport trait [Term] id: VT:0002338 name: pulmonary ventilation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the total volume of gas per minute inspired or expired." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002314 ! respiratory mechanics trait [Term] id: VT:0002339 name: lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the oval or bean shaped bodies located along the lymphatic system that consist of densely packed lymphocytes, lymph fluid and connective tissue; the sites where acquired immune responses are launched." [MeSH:D008198 "Lymph nodes", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "lymph gland morphology trait" EXACT [] synonym: "lymph node structure" EXACT [] is_a: VT:0002722 ! immune system organ morphology trait is_a: VT:0010071 ! lymphatic system morphology trait [Term] id: VT:0002340 name: axillary lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph nodes located around the axillary vein that receive lymphatic drainage from the upper or forelimb, scapular region and pectoral region." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0008463 ! peripheral lymph node morphology trait [Term] id: VT:0002342 name: lymph node trabeculae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the supporting structure of the lymph node." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0002343 name: lymph node cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outer area of the lymph node that has B and T cell domains." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0002344 name: lymph node B cell domain morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph node cortex in which B lymphocytes reside." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "B cell dependent cortex morphology trait" EXACT [] synonym: "B-cell domain morphology trait" EXACT [] synonym: "nodular lymph node cortex morphology trait" EXACT [] is_a: VT:0002343 ! lymph node cortex morphology trait [Term] id: VT:0002345 name: lymph node primary follicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the immunologically inactive B cell area of the lymph node cortex." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: Cells in the primary follicle consist of cohesive aggregates of small, normal-appearing lymphocytes. is_a: VT:0002344 ! lymph node B cell domain morphology trait [Term] id: VT:0002346 name: lymph node secondary follicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the immunologically active area of the lymph node cortex." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002344 ! lymph node B cell domain morphology trait [Term] id: VT:0002347 name: lymph node T cell domain morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the lymph node in which T lymphocytes reside." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "deep cortex morphology trait" EXACT [] synonym: "T cell dependent paracortex morphology trait" EXACT [] synonym: "T-cell domain morphology trait" EXACT [] is_a: VT:0002343 ! lymph node cortex morphology trait [Term] id: VT:0002348 name: lymph node medulla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the lymph node through which lymph flows on its way to the efferent lymphatics; it contains macrophages and antibody-secreting plasma cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "medullary sinus morphology trait" EXACT [] is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0002349 name: afferent lymphatic vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymphatic tube entering the lymph node." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001879 ! lymphatic vessel morphology trait is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0002350 name: efferent lymphatic vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymphatic tube exiting the lymph node." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001879 ! lymphatic vessel morphology trait is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0002351 name: cervical lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph nodes found near the neck and shoulders." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0008463 ! peripheral lymph node morphology trait [Term] id: VT:0002352 name: popliteal lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph nodes which drain the legs." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0008463 ! peripheral lymph node morphology trait [Term] id: VT:0002353 name: inguinal lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph nodes located in the groin area." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0008463 ! peripheral lymph node morphology trait [Term] id: VT:0002354 name: spleen trabecular artery morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern one of the branches of the splenic artery." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000689 ! spleen morphology trait is_a: VT:0002191 ! artery morphology trait [Term] id: VT:0002356 name: spleen red pulp morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the parenchymatous tissue network of the spleen that consists of loose plates or cords (sinuses) infiltrated with red blood cells where most of the blood filtration occurs and degenerate erythrocytes are removed from the circulation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "splenic red pulp morphology trait" EXACT [] is_a: VT:0000689 ! spleen morphology trait [Term] id: VT:0002357 name: spleen white pulp morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the parenchymatous tissue of the spleen that surrounds splenic blood vessels, consists of compact masses of lymphatic cells and is where foreign material removed from the blood is used to initiate an immune reaction that results in the production of antibodies." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Note that there is no consensus in the literature about which compartments constitute the white pulp or the ramifications of the microvasculature. In addition, notable differences exist between humans and rodents. In this ontology, the marginal sinus and marginal zone have been included as part of the white pulp. synonym: "splenic white pulp morphology trait" EXACT [] is_a: VT:0000689 ! spleen morphology trait [Term] id: VT:0002358 name: spleen periarteriolar lymphoid sheath morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the spleen within the marginal sinus, in which T cells surround the central arteriole." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "PALS morphology trait" EXACT [] synonym: "periarteriolar sheath morphology trait" EXACT [] synonym: "splenic periarteriolar lymphoid sheath morphology trait" EXACT [] synonym: "T cell domain of the splenic white pulp morphology trait" EXACT [] is_a: VT:0002357 ! spleen white pulp morphology trait [Term] id: VT:0002359 name: spleen germinal center morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the spleen secondary B follicle where rapid B-cell proliferation, somatic hypermutation, and selection for antigen binding occurs." [PMID:17495967] comment: Germinal centers are often identified by the binding of peanut agglutinin (PNA). synonym: "spleen follicle center morphology trait" EXACT [] synonym: "spleen follicle centre morphology trait" EXACT [] synonym: "spleen GC morphology trait" EXACT [] synonym: "splenic germinal center morphology trait" EXACT [] is_a: VT:0008472 ! spleen secondary B follicle morphology trait [Term] id: VT:0002360 name: spleen B cell corona morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the spleen secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes." [PMID:17495967] synonym: "B cell domain of the spleen morphology trait" EXACT [] synonym: "follicle mantle morphology trait" EXACT [] synonym: "lymphocytic corona morphology trait" EXACT [] synonym: "mantle zone morphology trait" EXACT [] synonym: "spleen B-cell corona morphology trait" EXACT [] synonym: "splenic B cell corona morphology trait" EXACT [] is_a: VT:0008472 ! spleen secondary B follicle morphology trait [Term] id: VT:0002361 name: spleen central arteriole morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "CA morphology trait" EXACT [] synonym: "follicular arteriole morphology trait" EXACT [] synonym: "splenic central arteriole morphology trait" EXACT [] is_a: VT:0002357 ! spleen white pulp morphology trait [Term] id: VT:0002362 name: spleen marginal zone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the zone between the red and white pulp of the spleen containing numerous macrophages and lymphocytes, and a rich plexus of sinusoids supplied by white pulp arterioles carrying blood-borne antigens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: Note that there is no consensus in the literature about which compartments constitute the white pulp or the ramifications of the microvasculature. In addition, notable differences exist between humans and rodents. In this ontology, the marginal zone has been included as part of the white pulp. synonym: "splenic marginal zone morphology trait" EXACT [] is_a: VT:0002357 ! spleen white pulp morphology trait [Term] id: VT:0002363 name: spleen marginal sinus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath (PALS) that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood." [PMID:11485909] comment: Note that there is no consensus in the literature about which compartments constitute the white pulp or the ramifications of the microvasculature. In addition, notable differences exist between humans and rodents. In this ontology, the marginal sinus (which may not exist in human) has been included as part of the white pulp. synonym: "splenic marginal sinus morphology trait" EXACT [] is_a: VT:0002357 ! spleen white pulp morphology trait [Term] id: VT:0002364 name: thymus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the primary lymphoid organ that is required for the maturation of T cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000703 ! thymus morphology trait is_a: VT:0002221 ! immune system organ size trait [Term] id: VT:0002367 name: thymus lobule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the basic structural unit of the thymus." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000703 ! thymus morphology trait [Term] id: VT:0002368 name: thymus capsule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fibrous connective tissue surrounding the thymus." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "thymic capsule morphology trait" EXACT [] is_a: VT:0000703 ! thymus morphology trait [Term] id: VT:0002369 name: thymus subcapsular epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial cells lining the capsule and trabeculae of the thymus." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0009544 ! thymus epithelium morphology trait [Term] id: VT:0002370 name: thymus trabeculae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the thymic connective tissue which extends into the parenchyma." [ISBN:0-397-51047-0 "Rubin E, et al. Pathology, 2nd edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000703 ! thymus morphology trait [Term] id: VT:0002371 name: thymus cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outer part of a thymus lobule that surrounds the medulla and is composed of closely packed lymphocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: The thymic cortex contains immature thymocytes, cortical epithelial cells, and scattered macrophages. is_a: VT:0002367 ! thymus lobule morphology trait [Term] id: VT:0002375 name: thymus medulla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the inner area of thymus lobules." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: The thymic medulla contains mature thymocytes, medulla epithelial cells, macrophages and dendritic cells. is_a: VT:0002367 ! thymus lobule morphology trait [Term] id: VT:0002376 name: dendritic cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the immunocompetent cells of the lymphoid and hemopoietic systems and skin, which function to process antigens and present them to T cells, thus stimulating cellular immunity." [MeSH:D003713 "dendritic cells", PMID:14499111] synonym: "dendritic cell function" EXACT [] synonym: "interdigitating reticular cell physiology trait" EXACT [] is_a: VT:0002442 ! leukocyte physiology trait [Term] id: VT:0002377 name: mucosa-associated lymphoid tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the regional immune system associated with the mucosa." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "MALT morphology trait" EXACT [] is_a: VT:0002722 ! immune system organ morphology trait is_a: VT:0010071 ! lymphatic system morphology trait [Term] id: VT:0002378 name: gut-associated lymphoid tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the regional immune system located in the gut." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "GALT morphology trait" EXACT [] is_a: VT:0002722 ! immune system organ morphology trait is_a: VT:0010071 ! lymphatic system morphology trait [Term] id: VT:0002379 name: oropharyngeal lymphoid tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the circular lymphoid tissue formed by the lingual, pharyngeal, and faucial tonsils." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "Waldeyer's ring morphology trait" EXACT [] is_a: VT:0002377 ! mucosa-associated lymphoid tissue morphology trait [Term] id: VT:0002380 name: tonsil morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "palatine tonsil morphology trait" EXACT [] is_a: VT:0002379 ! oropharyngeal lymphoid tissue morphology trait [Term] id: VT:0002384 name: nasopharyngeal tonsil morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph tissue in the roof and posterior wall of the nasopharynx." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "adenoid morphology trait" EXACT [] is_a: VT:0002379 ! oropharyngeal lymphoid tissue morphology trait [Term] id: VT:0002385 name: lingual tonsillar tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph tissue on the floor of the oropharyngeal passage, near the root of the tongue." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002379 ! oropharyngeal lymphoid tissue morphology trait [Term] id: VT:0002386 name: tubal tonsil morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph tissue associated with the pharyngeal opening of the auditory tube." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002379 ! oropharyngeal lymphoid tissue morphology trait [Term] id: VT:0002388 name: Peyer's patch epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the specialized epithelium of the protruding lymphoid tissue located on the mucosa of the small intestine that is composed of densely packed B cell follicles." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: Antigen normally enters the Peyer's patch via this specialized epithelium. synonym: "M cells morphology trait" EXACT [] is_a: VT:0000696 ! Peyer's patch morphology trait [Term] id: VT:0002389 name: Peyer's patch follicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the Peyer's patch normally occupied by B cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000696 ! Peyer's patch morphology trait [Term] id: VT:0002391 name: Peyer's patch germinal center morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the Peyer's patch where B cells proliferate and differentiate into plasma cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: Germinal centers are often identified by the binding of peanut agglutinin (PNA). is_a: VT:0002389 ! Peyer's patch follicle morphology trait [Term] id: VT:0002393 name: bronchus-associated lymphoid tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the regional immune system located near the bronchus." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "BALT morphology trait" EXACT [] synonym: "bronchial-associated lymphoid tissue morphology trait" EXACT [] is_a: VT:0002722 ! immune system organ morphology trait is_a: VT:0010071 ! lymphatic system morphology trait [Term] id: VT:0002398 name: bone marrow cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells found in the bone marrow." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0010250 ! hematopoietic system morphology trait [Term] id: VT:0002399 name: pluripotent precursor cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells that give rise to most types of cells necessary for fetal development." [MP:0002399] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0002400 name: multipotent stem cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the specialized cells that are committed to giving rise to cells with particular functions." [MP:0002400] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0002401 name: lymphopoiesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of lymphocytes and plasma cells from lymphoid stem cells which develop from the pluripotent hematopoietic stem cells in the bone marrow; lymphoid stem cells differentiate into T-lymphocytes; B-lymphocytes; plasma cells; or NK cells (natural killer cells), depending on the organ or tissues to which they migrate." [MeSH:D038041 "Lymphopoiesis"] synonym: "lymphocyte differentiation" EXACT [] is_a: VT:0005460 ! leukopoiesis trait [Term] id: VT:0002403 name: pre-B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells in the B lymphocyte lineage that have undergone VDJ rearrangement of the immunoglobulin heavy chain and are in the process of V-J rearrangement of the light chain: these cells express mu heavy chain on the cell surface." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: These cells express the mu heavy chain in both the cytoplasm and on the cell surface; in addition to the mu heavy chain, other cell surface markers include CD45R, MHC class II, CD19, CD20, CD38, and CD40. is_a: VT:0005022 ! immature B cell morphology trait [Term] id: VT:0002407 name: double-negative T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the subset of T cells found in the thymus that express neither CD4 nor CD8." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: These are precursors to mature T cells; normally, they do not circulate, but are found in the thymus and they have not undergone rearrangement of the alpha and beta T cell receptor genes. synonym: "CD4-CD8- T cell morphology trait" EXACT [] synonym: "double negative T cell morphology trait" EXACT [] synonym: "double-negative T-cell morphology trait" EXACT [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0002408 name: double-positive T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the subset of T cells found in the thymus that express both CD4 and CD8." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: These cells are precursors to mature T cells and are generally located in the thymus; during their development trait, the alpha and beta chains of the T cell receptor are rearranged and the TCR receptor can be expressed. synonym: "CD4+CD8+ T cell morphology trait" EXACT [] synonym: "double positive T cell morphology trait" EXACT [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0002414 name: myeloblast morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells found in the bone marrow that give rise to the granulocyte line of blood cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002398 ! bone marrow cell morphology trait [Term] id: VT:0002415 name: neutrophil development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the granular leukocytes that have a three- to five-lobed nucleus and cytoplasm that contains inconspicuous granules stainable by neutral dyes." [MeSH:D009504 "neutrophils", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "neutrophil differentiation" EXACT [] is_a: VT:0008111 ! granulocyte development trait [Term] id: VT:0002416 name: proerythroblast morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the immature, nucleated erythrocyte precursors that give rise to reticulocytes." [MP:0002416] synonym: "erythroid progenitor morphology trait" EXACT [] synonym: "normoblast morphology trait" EXACT [] is_a: VT:0010263 ! erythrocyte precursor morphology trait [Term] id: VT:0002419 name: innate immune response trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the early phase of the response to infection; normally, it is present at all times, does not increase with exposure to specific pathogens, and does not discriminate between pathogens." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "innate immunity trait" EXACT [] synonym: "natural immunity" EXACT [] xref: ATOL:0000933 is_a: VT:0010139 ! immune response trait [Term] id: VT:0002422 name: basophil morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the granular leukocytes that are characterized by pale-staining, lobate nucleus and cytoplasm and contain dark-staining granules of varying size and are stained by basic dyes." [MeSH:D001491 "basophils", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002441 ! granulocyte morphology trait [Term] id: VT:0002423 name: mast cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the granulated cells found in most tissues and which contain large amounts of histamine and heparin in granules." [MeSH:D008407 "mast cells"] synonym: "mast cell function" EXACT [] xref: ATOL:0000410 is_a: VT:0002442 ! leukocyte physiology trait [Term] id: VT:0002424 name: reticulocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the immature erythrocytes containing a basophilic cytoplasmic network." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0010263 ! erythrocyte precursor morphology trait [Term] id: VT:0002428 name: semicircular canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ of balance composed of three long bony tubes of the labyrinth." [MP:0002428] is_a: VT:0002729 ! inner ear canal morphology trait [Term] id: VT:0002429 name: blood cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the cells found in the blood." [MP:0002429] is_a: VT:0010250 ! hematopoietic system morphology trait [Term] id: VT:0002432 name: CD4-positive T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production." [MeSH:D015496 "CD4-positive T-lymphocytes", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "CD4+ T cell morphology trait" EXACT [] synonym: "CD4+ T-cell morphology trait" EXACT [] synonym: "single positive T cell morphology trait" BROAD [] is_a: VT:0002435 ! effector T cell morphology trait [Term] id: VT:0002433 name: T-helper 1 cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the type of T-helper cell whose cytokine production favors cellular immune responses and delayed type hypersensitivity." [CL:0000545 "T-helper 1 cell", ISBN:0781735149] synonym: "helper T cell type 1 morphology trait" EXACT [] synonym: "helper T lymphocyte type 1" EXACT [] synonym: "helper T-cell type 1" EXACT [] synonym: "helper T-lymphocyte type 1" EXACT [] synonym: "T helper 1 morphology trait" EXACT [] synonym: "TH1 cell" EXACT [] is_a: VT:0002432 ! CD4-positive T cell morphology trait [Term] id: VT:0002434 name: T-helper 2 cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the type of T-helper cell whose cytokine production promotes defense against extracellular parasites and humoral immune responses typical of allergy." [CL:0000546 "T-helper 2 cell", ISBN:0781735149] synonym: "helper T cell type 2 morphology trait" EXACT [] synonym: "helper T lymphocyte type 2" EXACT [] synonym: "helper T-cell type 2" EXACT [] synonym: "helper T-lymphocyte type 2" EXACT [] synonym: "T helper 2 morphology trait" EXACT [] synonym: "TH2 cell" EXACT [] is_a: VT:0002432 ! CD4-positive T cell morphology trait [Term] id: VT:0002435 name: effector T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the set of T lymphocytes that are able to respond immediately upon contact with cells bearing the appropriate peptide:MHC complex for the cell." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "mature T cell morphology trait" RELATED [] synonym: "single positive T cell morphology trait" RELATED [] synonym: "single-positive T cell morphology trait" RELATED [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0002436 name: CD8-positive, alpha-beta cytotoxic T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD8-positive, alpha-beta T cell capable of killing target cells in an antigen specific manner." [CL:0000794 "CD8-positive, alpha-beta cytotoxic T cell", ISBN:0781735149] comment: Note that while T cells of this subset are loosely referred to 'cytotoxic T cells,' as many other T cell types, including CD4-positive, alpha-beta T cells and gamma-delta T cells exhibit cytotoxicity in vitro and in vivo. synonym: "CD8-positive, alpha-beta cytotoxic T lymphocyte morphology trait" EXACT [] synonym: "CD8-positive, alpha-beta cytotoxic T-cell morphology trait" EXACT [] synonym: "CD8-positive, alpha-beta cytotoxic T-lymphocyte morphology trait" EXACT [] synonym: "CTL morphology trait" BROAD [] synonym: "cytotoxic T cell morphology trait" BROAD [] synonym: "cytotoxic T lymphocyte morphology trait" BROAD [] synonym: "cytotoxic T-cell morphology trait" BROAD [] synonym: "cytotoxic T-lymphocyte morphology trait" BROAD [] is_a: VT:0005010 ! CD8-positive T cell morphology trait [Term] id: VT:0002439 name: plasma cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a terminally differentiated, post-mitotic, short-lived cell of the B cell lineage devoted to producing large amounts of immunoglobulin." [CL:0000786 "plasma cell", ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Plasma cells are terminally differentiated B cells and no longer respond to antigens or helper T cells. In addition, they no longer express surface Ig or surface MHC class II molecules, and they secrete antibody at high rates. synonym: "plasmacyte morphology trait" EXACT [] is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0002440 name: memory B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a distinctly differentiated long-lived B cell that is readily activated upon re-encounter of its antigenic determinant; memory B cells differentiate from antigen-activated B cells which have been selected for expression of higher affinity immunoglobulin." [CL:0000787 "memory B cell", ISBN:0781735149] synonym: "memory B lymphocyte morphology trait" EXACT [] synonym: "memory B-cell morphology trait" EXACT [] is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0002441 name: granulocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of leukocytes that have abundant granules in the cytoplasm, including basophils, neutrophils, and eosinophils." [MeSH:D006098 "granulocytes", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0008246 ! leukocyte morphology trait [Term] id: VT:0002442 name: leukocyte physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the white blood cells (basophils, eosinophils, neutrophils, lymphocytes, dendritic cells, macrophages, mast cells, or monocytes)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001819 ! immune system cell physiology trait is_a: VT:0010249 ! blood cell physiology trait [Term] id: VT:0002443 name: eosinophil development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the granular leukocytes having a two-lobed nucleus and cytoplasm containing coarse, round granules that are uniform in size and stainable by eosin." [MeSH:D004804 "eosinophils", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "eosinocyte differentiation" EXACT [] synonym: "eosinophil differentiation" EXACT [] synonym: "eosinophilic leucocyte differentiation" EXACT [] synonym: "eosinophilic leukocyte differentiation" EXACT [] synonym: "polymorphonuclear leucocyte differentiation" EXACT [] synonym: "polymorphonuclear leukocyte differentiation" EXACT [] is_a: VT:0008111 ! granulocyte development trait [Term] id: VT:0002444 name: T cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in lymphocytes that are responsible for cell-mediated immunity and immune system regulation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "T cell function" EXACT [] synonym: "T lymphocyte function" EXACT [] synonym: "T-cell physiology trait" EXACT [] is_a: VT:0003945 ! lymphocyte physiology trait [Term] id: VT:0002445 name: mononuclear leukocyte differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which relatively unspecialized cells acquire the specialized features of leukocytes with a single non-segmented nucleus in the mature form." [CL:0000842 "mononuclear cell"] synonym: "mononuclear leukocyte development trait" EXACT [] is_a: VT:0005460 ! leukopoiesis trait [Term] id: VT:0002446 name: macrophage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large mononuclear phagocytes which differentiate from monocytes, are typically resident in a particular tissue, and are capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [CL:0000235 "macrophage", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "mononuclear phagocyte morphology trait" BROAD [] is_a: VT:0008195 ! antigen presenting cell morphology trait is_a: VT:0008246 ! leukocyte morphology trait is_a: VT:0008248 ! mononuclear phagocyte morphology trait [Term] id: VT:0002447 name: erythrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fetal and adult cells in the blood that carry oxygen, red blood cells." [MP:0002447] synonym: "red blood cell morphology trait" EXACT [] is_a: VT:0002429 ! blood cell morphology trait [Term] id: VT:0002450 name: immune system organ development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the organs associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "lymph organ development trait" RELATED [] is_a: VT:0010179 ! immune system development trait [Term] id: VT:0002451 name: macrophage physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the large mononuclear phagocytes which differentiate from monocytes, are typically resident in a particular tissue, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [CL:0000235 "macrophage", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002442 ! leukocyte physiology trait [Term] id: VT:0002453 name: B cell antigen presentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of B lymphocytes to process and/or present antigen." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "B lymphocyte antigen presentation" EXACT [] synonym: "lymphocyte antigen presentation " EXACT [] is_a: VT:0001835 ! antigen presentation trait is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0002454 name: macrophage antigen presentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of macrophage phagocytic cells to process and present antigen to T lymphocytes." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] is_a: VT:0001835 ! antigen presentation trait is_a: VT:0002451 ! macrophage physiology trait [Term] id: VT:0002455 name: dendritic cell antigen presentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of dendritic cells to process and present antigen to T lymphocytes." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] is_a: VT:0001835 ! antigen presentation trait is_a: VT:0002376 ! dendritic cell physiology trait [Term] id: VT:0002456 name: Langerhans cell antigen presentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of phagocytic cells of the epidermis to display antigen for recognition by T lymphocytes." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "interdigitating reticular cell antigen presentation " EXACT [] is_a: VT:0001835 ! antigen presentation trait is_a: VT:0005362 ! Langerhans cell physiology trait [Term] id: VT:0002458 name: B cell quantity namespace: Trait.ontology def: "The proportion or number of cells that are formed in the bone marrow, migrate to the peripheral lymphatic system, and mature into plasma cells or memory cells; these cells are involved in humoral immunity." [ISBN:0-8036-0655-99 "Taber's Cyclopedic Medical Dictionary, 19th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "B cell number" EXACT [] synonym: "B lymphocyte number" EXACT [] synonym: "B-cell number" EXACT [] is_a: VT:0000717 ! lymphocyte quantity is_a: VT:0004939 ! B cell morphology trait [Term] id: VT:0002459 name: B cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in lymphocytes that expresses membrane-bound antibody, and differentiate into antibody-secreting plasma cells and memory cells upon interaction with antigen; B cells are the primary lymphocytes responsible for humoral immunity, and are most effective against extracellular pathogens." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "B lymphocyte physiology trait" EXACT [] synonym: "B-cell physiology trait" EXACT [] xref: ATOL:0000411 is_a: VT:0003945 ! lymphocyte physiology trait [Term] id: VT:0002460 name: blood immunoglobulin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of members of a diverse group of plasma proteins, made up of polypeptide chains, that function as a primary mechanism for protection against disease." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "immunoglobulin level" RELATED [] synonym: "serum level of immunoglobulin" RELATED [] is_a: VT:0005416 ! blood protein amount [Term] id: VT:0002462 name: granulocyte physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in neutrophils, eosinophils, or basophils." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002442 ! leukocyte physiology trait [Term] id: VT:0002463 name: neutrophil physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [ISBN:0721601464] synonym: "neutrocyte physiology trait" EXACT [] synonym: "neutrophil leucocyte physiology trait" EXACT [] synonym: "neutrophil leukocyte physiology trait" EXACT [] synonym: "neutrophilic leucocyte physiology trait" EXACT [] synonym: "neutrophilic leukocyte physiology trait" EXACT [] synonym: "PMN physiology trait" BROAD [] synonym: "polymorphonuclear leucocyte physiology trait" BROAD [] synonym: "polymorphonuclear leukocyte physiology trait" BROAD [] synonym: "polymorphonuclear neutrophil physiology trait" BROAD [] synonym: "polynuclear neutrophilic leucocyte physiology trait" BROAD [] synonym: "polynuclear neutrophilic leukocyte physiology trait" BROAD [] is_a: VT:0002462 ! granulocyte physiology trait [Term] id: VT:0002464 name: basophil physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the leukocyte that contains granules that stain with basic dyes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002462 ! granulocyte physiology trait [Term] id: VT:0002465 name: eosinophil physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the immature or mature forms of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin; involved in clearance of parasitic infections and in allergic reactions." [CL:0000771, ISBN:0721601464] synonym: "eosinocyte physiology trait" EXACT [] synonym: "eosinophilic leucocyte physiology trait" EXACT [] synonym: "eosinophilic leukocyte physiology trait" EXACT [] synonym: "polymorphonuclear leucocyte physiology trait" BROAD [] synonym: "polymorphonuclear leukocyte physiology trait" BROAD [] is_a: VT:0002462 ! granulocyte physiology trait [Term] id: VT:0002467 name: neutrophil phagocytosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of neutrophils to internalize particulate matter." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] xref: ATOL:0000413 is_a: VT:0002419 ! innate immune response trait is_a: VT:0002463 ! neutrophil physiology trait [Term] id: VT:0002471 name: complement physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes involved in the cascade of proteins that act together to attack extracellular pathogens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002419 ! innate immune response trait [Term] id: VT:0002472 name: complement alternative pathway physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the plasma protein cascade triggered by direct contact with pathogen surfaces." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "alternative complement cascade" EXACT [] synonym: "alternative complement pathway" EXACT [] synonym: "complement alternative pathway function" EXACT [] is_a: VT:0002471 ! complement physiology trait [Term] id: VT:0002473 name: complement classical pathway physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the plasma protein cascade triggered by antigen:antibody complexes." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "classical complement cascade" EXACT [] synonym: "classical complement pathway" EXACT [] synonym: "complement classical pathway function" EXACT [] is_a: VT:0002471 ! complement physiology trait [Term] id: VT:0002483 name: acute phase protein physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the series of proteins found in the blood shortly after infection, which participate in the early phases of host defense against infection." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0002484 name: C-reactive protein physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of this plasma protein that normally circulates in increased amounts during inflammation or after tissue damage." [MESH:D12.776.034.145] is_obsolete: true [Term] id: VT:0002486 name: serum amyloid protein physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of an acute-phase reaction protein that is a precursor to amyloid A protein; it is present in very high levels during acute inflammatory episodes, and is present in low concentrations in normal sera, but is found at higher concentrations in sera of older persons and in patients with amyloidosis." [MESH:D12.776.049.790] synonym: "SAA protein physiology trait" RELATED [] synonym: "Serum Amyloid A Protein physiology trait" EXACT [] is_obsolete: true [Term] id: VT:0002491 name: blood immunoglobulin D amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of immunoglobulin present on the surface of B lymphocytes that acts as an antigen receptor." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "IgD concentration" RELATED [] synonym: "IgD level" RELATED [] synonym: "plasma immunoglobulin D amount" NARROW [] is_a: VT:0002460 ! blood immunoglobulin amount [Term] id: VT:0002492 name: blood immunoglobulin E amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of immunoglobulin that attaches to mast cells in the respiratory and intestinal tracts and plays a major role in allergic reactions." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "IgE concentration" RELATED [] synonym: "IgE level" RELATED [] synonym: "plasma immunoglobulin E amount" NARROW [] is_a: VT:0002460 ! blood immunoglobulin amount [Term] id: VT:0002504 name: serotonin activity namespace: Trait.ontology def: "The degree of function or response of this biochemical messenger and regulator, found in the CNS, gastrointestinal tract, and produced by platelets; it normally mediates neurotransmission, gastrointestinal motility, hemostasis, and cardiovascular integrity." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "5-HT physiology trait" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002543 name: phalanx length namespace: Trait.ontology def: "The distance from point to point along the longest axis of any of the long bones of the digits." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005306 ! phalanx morphology trait [Term] id: VT:0002544 name: digit length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the fingers or toes, or their corresponding parts in other vertebrates." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002110 ! digit morphology trait [Term] id: VT:0002551 name: blood coagulation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the sequential process by which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] comment: pslim term synonym: "clotting" EXACT [] xref: GO:0007596 "blood coagulation" is_a: VT:0000260 ! hemostasis trait [Term] id: VT:0002557 name: conspecific interaction trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the behavior of animals towards other individuals of the same species" [MGI:smb, MP:0002557] subset: slim_cattle subset: slim_chkn synonym: "social behavior" EXACT [] synonym: "social behavior trait" RELATED [] synonym: "socialization" NARROW [] is_a: VT:0015008 ! total fat pad mass [Term] id: VT:0002566 name: sexual interaction trait namespace: Trait.ontology def: "any measurable or observable behavioral characteristic related to activities used to persuade or induce an individual to mate and activities involved in the physical act of mating" [ABO:core, MGI:smb, MP:0002566] synonym: "breeding" NARROW [] synonym: "mating" NARROW [] is_a: VT:0015008 ! total fat pad mass [Term] id: VT:0002568 name: behavioral response to addictive substance trait namespace: Trait.ontology def: "any measurable or observable characteristic related to a behavioral reaction to an addictive substance" [MGI:MP, MGI:smb] synonym: "neurological/behavioral: addiction/drug abuse" EXACT [] is_a: VT:0015031 ! behavioral response to xenobiotic stimulus trait [Term] id: VT:0002572 name: emotion/affect behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to reactions in tests for emotional related behaviors" [MGI:MP, MGI:smb] subset: slim_chkn subset: slim_pig is_a: VT:0010442 ! behavior trait [Term] id: VT:0002576 name: enamel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the hard outer coating of the exposed portion of the tooth." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:11406633] is_a: VT:0003930 ! tooth hard tissue morphology trait [Term] id: VT:0002579 name: secondary lens fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the lens fibers which result from elongation and differentiation of epithelial cells throughout life; they are arranged around a core of primary lens fibers." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002840 ! lens fiber morphology trait [Term] id: VT:0002581 name: ileum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the portion of the small intestine that extends from the jejunum to the colon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000417 is_a: VT:0000496 ! small intestine morphology trait [Term] id: VT:0002582 name: extraembryonic tissue organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the membranes involved with the embryo's protection and nutrition." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:9171370, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0002602 name: eosinophil quantity namespace: Trait.ontology def: "The proportion or number of the immature or mature form of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "eosinophil cell number" EXACT [] synonym: "eosinophil count" EXACT [] synonym: "eosinophil number" EXACT [] is_a: VT:0000334 ! granulocyte quantity is_a: VT:0005061 ! eosinophil morphology trait [Term] id: VT:0002607 name: basophil quantity namespace: Trait.ontology def: "The proportion or number of granular leukocytes that are characterized by pale-staining, lobate nucleus and cytoplasm, contain dark-staining granules of varying size, and are stained by basic dyes." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MPD:Mouse_Phenome_Database] synonym: "basophil cell number" EXACT [] synonym: "basophil count" EXACT [] synonym: "basophil number" EXACT [] is_a: VT:0000334 ! granulocyte quantity is_a: VT:0002422 ! basophil morphology trait [Term] id: VT:0002619 name: lymphocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells involved in adaptive immune reactions of the body, including B cells, T cells and natural killer cells." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "lymphocyte structure" NARROW [] is_a: VT:0008246 ! leukocyte morphology trait [Term] id: VT:0002620 name: monocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large, phagocytic mononuclear leukocytes produced in the vertebrate bone marrow and released into the blood." [CL:0000576 "monocyte", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0008246 ! leukocyte morphology trait is_a: VT:0008248 ! mononuclear phagocyte morphology trait [Term] id: VT:0002622 name: cochlear hair cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the sensory epithelial cells of the cochlea; these cells are in synaptic contact with the auditory nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002622] synonym: "auditory hair cell morphology trait" EXACT [] is_a: VT:0000042 ! organ of Corti morphology trait is_a: VT:0000045 ! hair cell morphology trait is_a: VT:0003308 ! cochlea sensory epithelium morphology trait is_a: VT:0015093 ! hearing system trait [Term] id: VT:0002623 name: vestibular hair cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the sensory epithelium of the maculae and cristae of the membranous labyrinth of the internal ear; afferent and efferent nerve fibers of the vestibular nerve end synaptically on them; from the apical end of each cell a bundle of stereocilia and a kinocilium extend into the statoconial membrane of the maculae and the cupula of the cristae." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002623] is_a: VT:0000034 ! vestibule morphology trait is_a: VT:0000045 ! hair cell morphology trait is_a: VT:0015096 ! equilibrioception system morphology trait [Term] id: VT:0002625 name: left ventricle cell size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cells in the left lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "left ventricular cell size trait" RELATED [] is_a: VT:0002753 ! left ventricle size trait [Term] id: VT:0002630 name: endocochlear potential trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the electrical potential difference between the endolymphatic and perilymphatic compartments of the cochlea." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "endolymphatic potential" EXACT [] is_a: VT:0000319 ! endolymph physiology trait is_a: VT:0000365 ! hearing electrophysiology trait is_a: VT:0000483 ! sensorineural hearing physiology trait [Term] id: VT:0002631 name: epididymis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the elongated structure connected to the posterior surface of the testes that transports, stores, and matures spermatozoa between testes and vas deferens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] xref: ATOL:0000418 is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0002634 name: sensorimotor gating trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which inhibitory neural pathways filter multiple stimuli and allow attention to be focused on one stimulus; usually measured by pre-pulse inhibition (PPI)." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:9298901] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0002636 name: time of vaginal opening namespace: Trait.ontology def: "The timing of the opening of the genital canal in a female." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001938 ! time of sexual maturation trait [Term] id: VT:0002637 name: uterus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the hollow muscular organ where the embryo/fetus develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: ATOL:0000420 is_a: VT:0001120 ! uterus morphology trait [Term] id: VT:0002641 name: erythrocyte shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the cells in the blood that carry oxygen, red blood cells" [MP:0002447] synonym: "red blood cell shape trait" EXACT [] is_a: VT:0002447 ! erythrocyte morphology trait [Term] id: VT:0002644 name: blood triglyceride amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of triacylglycerols (glycerol esterified at each of its three hydroxyl groups by a fatty acid)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "blood triglyceride level" RELATED [] synonym: "plasma triacylglycerol level" RELATED [] synonym: "plasma triglyceride level" RELATED [] synonym: "serum triacylglycerol level" RELATED [] synonym: "serum triglyceride level" RELATED [] is_a: VT:0000187 ! triglyceride amount is_a: VT:0003949 ! blood lipid amount [Term] id: VT:0002645 name: cholesterol absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005342 ! lipid absorption trait [Term] id: VT:0002648 name: enamel delamination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the separation of the hard outer coating of the exposed portion of the tooth from the underlying hard tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "delaminated enamel" RELATED [] is_a: VT:0002576 ! enamel morphology trait [Term] id: VT:0002649 name: enamel rod organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the structural units of tooth enamel." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002576 ! enamel morphology trait [Term] id: VT:0002650 name: ameloblast development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the epithelial cells of the inner layer of the enamel organ of the developing tooth during their formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002650] synonym: "enamel cell development trait" EXACT [] is_a: VT:0000116 ! tooth development trait [Term] id: VT:0002651 name: sciatic nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the nerve which originates in the lumbar and sacral spinal cord and supplies motor and sensory innervation to the lower extremity." [MP:0002651] is_a: VT:0001077 ! spinal nerve morphology trait [Term] id: VT:0002653 name: ependyma morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cellular membrane that lines the brain ventricles and the central canal of the spinal cord." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002653] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0002655 name: keratinocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells of the epidermis that produce keratin in the process of differentiating into the dead and fully keratinized cells of the stratum corneum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001216 ! epidermis morphology trait [Term] id: VT:0002656 name: keratinocyte development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cells of the epidermis that produce keratin in the process of differentiating into the dead and fully keratinized cells of the stratum corneum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003941 ! skin development trait [Term] id: VT:0002658 name: liver regeneration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which the liver to increases in size following tissue loss." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000609 ! liver physiology trait [Term] id: VT:0002660 name: caput epididymis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the head of the epididymis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000422 is_a: VT:0002631 ! epididymis morphology trait [Term] id: VT:0002661 name: corpus epididymis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the body of the epididymis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000423 is_a: VT:0002631 ! epididymis morphology trait [Term] id: VT:0002662 name: cauda epididymis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tail of the epididymis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000424 is_a: VT:0002631 ! epididymis morphology trait [Term] id: VT:0002663 name: blastocele development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cavity in the blastula of the developing embryo." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:8058792] synonym: "blastocele formation" EXACT [] synonym: "blastocoel formation" EXACT [] synonym: "blastocoele formation" EXACT [] is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0002664 name: blood adrenocorticotropin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the pituitary hormone that stimulates the secretion of adrenal cortical steroids and induces growth of the adrenal cortex." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "circulating adrenocorticotropic hormone level" RELATED [] synonym: "circulating adrenocorticotropin level" RELATED [] synonym: "serum levels of ACTH" RELATED [] synonym: "serum levels of adrenocorticotropin" RELATED [] is_a: VT:0005116 ! blood pituitary hormone amount [Term] id: VT:0002668 name: blood potassium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this alkaline metallic element, the most abundant intracellular ion." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: anomalies in the extracellular (circulating) concentration have important implications for the function of excitable tissues, such as nerve and muscle synonym: "blood potassium level" RELATED [] synonym: "circulating potassium level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0002669 name: scrotum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the external sac of skin that encloses the testes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000425 is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0002673 name: sperm quantity namespace: Trait.ontology def: "The proportion or number of spermatozoa." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "sperm count" EXACT [] synonym: "sperm number" EXACT [] is_a: VT:0002209 ! germ cell quanitity is_a: VT:0010042 ! sperm morphology trait [Term] id: VT:0002674 name: sperm motility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the mobility of the spermatozoa." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000427 is_a: VT:0003698 ! male reproductive system physiology trait [Term] id: VT:0002679 name: corpus luteum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the yellow endocrine body formed in the ovary after follicle rupture." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "corpora lutea morphology trait" EXACT [] is_a: VT:0001126 ! ovary morphology trait [Term] id: VT:0002680 name: corpus luteum quantity namespace: Trait.ontology def: "The proportion or number of yellow endocrine bodies formed in the ovary after follicle rupture." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "corpora lutea number" EXACT [] synonym: "corpus luteum number" EXACT [] synonym: "ovulation rate" RELATED [] is_a: VT:0002679 ! corpus luteum morphology trait [Term] id: VT:0002682 name: mature ovarian follicle quantity namespace: Trait.ontology def: "The proportion or number of fluid-filled, oocyte-containing ovarian structures at their last stage of growth (characterized by the formation of a cavity [antrum] filled with follicular fluid)." [ISBN:90-801886-5-4 "Compendium of Animal Reproduction"] synonym: "antrum follicle quantity" EXACT [] synonym: "graafian follicle quantity" EXACT [] synonym: "mature ovarian follicle number" EXACT [] xref: ATOL:0000430 is_a: VT:0001131 ! ovarian follicle morphology trait [Term] id: VT:0002683 name: onset of fertility namespace: Trait.ontology def: "The age at which an organism develops the ability to produce live offspring." [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] synonym: "age at first breeding" NARROW [] synonym: "age at first egg" NARROW [] synonym: "age at puberty" EXACT [] synonym: "age at sexual maturity" EXACT [] synonym: "onset of fertility" EXACT [] is_a: VT:0001938 ! time of sexual maturation trait [Term] id: VT:0002685 name: spermatogonia proliferation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which the spermatogonial stem cells undergo expansion by cell division." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:10747865] xref: ATOL:0000432 is_a: VT:0001156 ! spermatogenesis trait [Term] id: VT:0002689 name: molar morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the most posterior teeth located on either side of the jaw, and characterized by a large crown and broad chewing surface." [MP:0002689] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0002693 name: pancreas gland physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organ that secretes pancreatic juice into the duodenum and secretes glucagon and insulin into the bloodstream." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "pancreas function" EXACT [] synonym: "pancreatic physiology trait" EXACT [] is_a: VT:0000066 ! pancreas/salivary gland physiology trait is_a: VT:0002164 ! gland physiology trait [Term] id: VT:0002694 name: secretion by pancreas trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances from the pancreas." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002694] synonym: "pancreas secretion trait" EXACT [] is_a: VT:0002693 ! pancreas gland physiology trait [Term] id: VT:0002695 name: blood glucagon amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a polypeptide hormone secreted by the pancreas that increases the blood glucose level by stimulating the liver to change stored glycogen to glucose; opposes the action of insulin." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0002697 name: eye size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the organ of vision." [MP:0002697] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0002698 name: sclera morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fibrous, outer envelope of the eyeball, covering it entirely excepting the segment covered anteriorly by the cornea." [MP:0002698] synonym: "sclerotic coat morphology trait" EXACT [] synonym: "sclerotica morphology trait" EXACT [] synonym: "tunica albuginea oculi morphology trait" EXACT [] synonym: "tunica sclerotica morphology trait" EXACT [] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0002699 name: vitreous body morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the transparent, semigelatinous substance that fills the cavity behind the crystalline lens of the eye and in front of the retina." [MP:0002699] synonym: "vitreous morphology trait" EXACT [] is_a: VT:0005195 ! posterior eye segment morphology trait is_a: VT:0005299 ! eye posterior chamber morphology trait [Term] id: VT:0002700 name: vitreous body clarity namespace: Trait.ontology def: "The degree of transparency of the gel filling the inner portion of the eyeball between the lens and retina." [MP:0002700] is_a: VT:0002699 ! vitreous body morphology trait [Term] id: VT:0002703 name: kidney tubule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the loops of Henle, proximal and distal convoluted tubules, and collecting ducts in the kidney." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MeSH:D007684, MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "renal tubule morphology trait" EXACT [] is_a: VT:0003881 ! nephron morphology trait [Term] id: VT:0002705 name: kidney tubule size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the loops of Henle, proximal and distal convoluted tubules, and collecting ducts in the kidney." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "renal tubule size trait" EXACT [] is_a: VT:0002703 ! kidney tubule morphology trait [Term] id: VT:0002706 name: kidney size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of one or both of the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0002707 name: kidney mass namespace: Trait.ontology def: "The amount of matter in one or both of the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "kidney weight" RELATED [] is_a: VT:0002706 ! kidney size trait [Term] id: VT:0002713 name: glycogen catabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to break down glycogen; or rate of glycogen breakdown." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "glycogenolysis" EXACT [] xref: GO:0005980 "glycogen catabolic process" is_a: VT:0015088 ! glucose metabolism trait [Term] id: VT:0002716 name: preputial gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the modified sebaceous glands of the corona and neck of the glans penis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:il "Ira Lu, Mouse Genome Informatics Curator"] is_a: VT:0000655 ! sex gland size trait is_a: VT:0002717 ! preputial gland morphology trait [Term] id: VT:0002717 name: preputial gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sebaceous glands of the corona and neck of the glans penis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000653 ! sex gland morphology trait [Term] id: VT:0002718 name: inner cell mass morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells of the blastocyst that develop into the body of the embryo." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0002722 name: immune system organ morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organs associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "lymph organ morphology trait" RELATED [] is_a: VT:0000685 ! immune system morphology trait [Term] id: VT:0002723 name: immune serum protein activity trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the degree of function or response of circulating immune proteins." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true [Term] id: VT:0002725 name: vein morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the blood vessels that carry blood towards the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "venous morphology trait" EXACT [] xref: MP:0002725 is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0002726 name: pulmonary vein morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the blood vessels that return oxygenated blood from the lungs to the left atrium of the heart." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "pulmonary venous morphology trait" EXACT [] is_a: VT:0002725 ! vein morphology trait [Term] id: VT:0002729 name: inner ear canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the tubular ducts of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002729] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0002731 name: colon size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the portion of the large intestine between the cecum and the rectum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000495 ! colon morphology trait [Term] id: VT:0002733 name: thermal nociception trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to sense pain elicited by thermal stimulation." [MP:0002733] xref: ATOL:0000433 xref: GO:0050965 "detection of temperature stimulus involved in sensory perception of pain" is_a: VT:0015100 ! nociception system physiology trait [Term] id: VT:0002734 name: mechanical nociception trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to sense pain elicited by mechanical stimulation." [MP:0002734] xref: ATOL:0000434 xref: GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" is_a: VT:0015099 ! touch perception trait is_a: VT:0015100 ! nociception system physiology trait [Term] id: VT:0002735 name: chemical nociception trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to sense pain elicited by chemical stimulation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MP:0002735] xref: ATOL:0000435 xref: GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" is_a: VT:0015100 ! nociception system physiology trait [Term] id: VT:0002739 name: olfactory bulb development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the olfactory bulb during its formation and differentiation." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000913 ! brain development trait [Term] id: VT:0002741 name: olfactory bulb size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the forebrain region that coordinates neuronal signaling involved in the perception of smell; it receives input from the sensory neurons and outputs to the olfactory cortex." [PMID:12379852] is_a: VT:0000819 ! olfactory bulb morphology trait [Term] id: VT:0002742 name: submandibular lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lymph nodes beneath the mandible that receive vessels from the face and tongue and drain into the superior deep cervical nodes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000701 ! lymph node size trait is_a: VT:0009627 ! submandibular lymph node morphology trait [Term] id: VT:0002746 name: semilunar valve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the valves that gate the flow of blood from the ventricles into the aorta and pulmonary trunk." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000285 ! heart valve morphology trait [Term] id: VT:0002751 name: autonomic nervous system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neuronal regulatory system for the viscera, the smooth muscles of the body and exocrine glands." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MP:0002751] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0002752 name: somatic nervous system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the part of the peripheral nervous system that is responsible for conveying voluntary motor and external sensory information, including all nerves controlling the skeletal muscular system and external sensory receptors." [MP:0002752] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0002753 name: left ventricle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the left lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "left ventricular size trait" RELATED [] is_a: VT:0003921 ! left ventricle morphology trait is_a: VT:0010298 ! heart ventricle size trait [Term] id: VT:0002754 name: right ventricle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the right lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "right ventricular size trait" RELATED [] is_a: VT:0003920 ! right ventricle morphology trait is_a: VT:0010298 ! heart ventricle size trait [Term] id: VT:0002756 name: cerebral cortex pyramidal cell quantity namespace: Trait.ontology def: "The proportion or number of projection neurons in the pyramidal cell layer of the cerebral cortex." [MP:0009969] synonym: "cerebral cortex projection neuron number" EXACT [] synonym: "cerebral cortex pyramidal cell number" EXACT [] synonym: "cerebral cortex pyramidal neuron number" EXACT [] is_a: VT:0003241 ! cerebral cortex neuron quantity is_a: VT:0005442 ! cerebral cortex pyramidal cell morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0002758 name: tail length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the appendage at the caudal end of the vertebral column." [MP:0002111] is_a: VT:0003456 ! tail size trait [Term] id: VT:0002759 name: caudal vertebra morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bony segments of the tail; in tailless vertebrates, these vertebrae may be united to form the coccyx." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:12679105] synonym: "coccygeal vertebra morphology trait" EXACT [] synonym: "coccyx morphology trait" RELATED [] synonym: "tail vertebra morphology trait" EXACT [] is_a: VT:0002111 ! tail morphology trait [Term] id: VT:0002761 name: hippocampus mossy fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the axons of neuronal cells in the dentate gyrus." [MP:0002761] synonym: "hippocampal mossy fiber morphology trait" EXACT [] is_a: VT:0000807 ! hippocampus morphology trait [Term] id: VT:0002769 name: vas deferens morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the secretory duct of the testicle that carries spermatozoa, running from the epididymis, of which it is the continuation, to the prostatic urethra, where it terminates to form the ejaculatory duct." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0002773 name: blood luteinizing hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of LH, the hormone that regulates steroid production by the interstitial cells of the testis and the ovary." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:8703054] synonym: "blood luteinizing hormone level" RELATED [] synonym: "circulating luteinizing hormone level" RELATED [] synonym: "serum levels of LH" RELATED [] synonym: "serum levels of luteinizing hormone" RELATED [] synonym: "serum levels of lutropin" RELATED [] is_a: VT:0003361 ! blood gonadotropin amount is_a: VT:0005116 ! blood pituitary hormone amount [Term] id: VT:0002779 name: secretion by sex gland trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances from any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002779, MP:0005647] synonym: "sex gland secretion trait" EXACT [] is_a: VT:0005647 ! sex gland physiology trait [Term] id: VT:0002782 name: secretion by testes trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances from the male reproductive glands." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002782] synonym: "testicular secretion trait" EXACT [] xref: ATOL:0000437 is_a: VT:0000051 ! testes physiology trait is_a: VT:0002779 ! secretion by sex gland trait [Term] id: VT:0002783 name: secretion by ovary trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances from the female reproductive gland containing the germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002783] synonym: "ovarian secretion trait" EXACT [] xref: ATOL:0000438 is_a: VT:0002779 ! secretion by sex gland trait is_a: VT:0003507 ! ovary physiology trait [Term] id: VT:0002784 name: Sertoli cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells of the seminiferous tubules that create the blood-testes barrier and enable spermatogenesis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] xref: ATOL:0000439 is_a: VT:0002216 ! seminiferous tubule morphology trait [Term] id: VT:0002785 name: Leydig cell quantity namespace: Trait.ontology def: "The proportion or number of the interstitial cells of the seminiferous tubules that secrete testosterone." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:11090455] synonym: "Leydig cell number" EXACT [] xref: ATOL:0000440 is_a: VT:0002786 ! Leydig cell morphology trait [Term] id: VT:0002786 name: Leydig cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the interstitial cells of the seminiferous tubules that secrete testosterone." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] xref: ATOL:0000441 is_a: VT:0002216 ! seminiferous tubule morphology trait [Term] id: VT:0002790 name: blood follicle stimulating hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the hormone that, in females, stimulates the Graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood follicle stimulating hormone level" RELATED [] synonym: "circulating follicle stimulating hormone level" RELATED [] synonym: "serum levels of follicle stimulating hormone" RELATED [] synonym: "serum levels of follitropin" RELATED [] synonym: "serum levels of FSH" RELATED [] synonym: "serum levels of gametokinetic hormone" RELATED [] is_a: VT:0003361 ! blood gonadotropin amount is_a: VT:0005116 ! blood pituitary hormone amount [Term] id: VT:0002792 name: retina blood vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the blood vessels supplying the retina." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "morphology trait of the retinal vasculature" RELATED [] synonym: "retinal vascular morphology trait" RELATED [] xref: MP:0002792 is_a: VT:0001325 ! retina morphology trait is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0002796 name: skin barrier function trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the membranous protective covering of the body to provide a protective barrier, to prevent water loss, moderate water integration and prevent foreign substances and bacteria from entering the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", Mosby:Mosbys Medical Dictionary 8th Ed] xref: GO:0033561 "regulation of water loss via skin" is_a: VT:0001784 ! fluid regulation trait is_a: VT:0005501 ! skin physiology trait [Term] id: VT:0002809 name: spinal cord size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the spinal cord." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000955 ! spinal cord morphology trait [Term] id: VT:0002817 name: tooth mineralization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which calcium salts are deposited into the dental enamel, dentin and cementum." [MP:0002817] is_a: VT:0000116 ! tooth development trait is_a: VT:0003930 ! tooth hard tissue morphology trait [Term] id: VT:0002818 name: dentin morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the hard portion of the tooth surrounding the pulp, covered by enamel on the crown and cementum on the root." [MP:0002818] is_a: VT:0003930 ! tooth hard tissue morphology trait [Term] id: VT:0002819 name: pulp cavity morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the central hollow space of a tooth." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0002820 name: premaxillary bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior and inner portion of the maxilla." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "incisive bone morphology trait" EXACT [] synonym: "incisor bone morphology trait" EXACT [] synonym: "intermaxillary bone morphology trait" EXACT [] is_a: VT:0000455 ! maxilla morphology trait [Term] id: VT:0002823 name: rib development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the bones forming the bony wall of the chest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:12925591] is_a: VT:0010005 ! bone development trait is_a: VT:0015061 ! thorax development trait [Term] id: VT:0002824 name: chorioallantoic fusion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of the membrane that forms the fetal portion of the placenta; derived from the fusion of the chorion and the allantois." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] is_a: VT:0001712 ! placenta development trait [Term] id: VT:0002825 name: notochord morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the axial fibrocellular cord in embryos around which develops the vertebral primordia." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0002827 name: kidney corpuscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a tuft of glomerular capillaries and the glomerular capsule (Bowman's capsule) that encloses it." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Malpighian corpuscle morphology trait" EXACT [] synonym: "renal corpuscle morphology trait" EXACT [] is_a: VT:0000521 ! kidney cortex morphology trait is_a: VT:0003881 ! nephron morphology trait [Term] id: VT:0002828 name: glomerular capsule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the expanded beginning of a nephron that encloses the glomerulus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Bowman's capsule morphology trait" EXACT [] synonym: "capsula glomeruli morphology trait" EXACT [] synonym: "malphighian capsule morphology trait" EXACT [] is_a: VT:0002827 ! kidney corpuscle morphology trait [Term] id: VT:0002829 name: juxtaglomerular apparatus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the complex of modified smooth muscle cells consisting of juxtaglomerular cells, extraglomerular mesangium lacis cells, the macula densa of the distal convoluted tubule, and granular epithelial peripolar cells; these cells are found in the walls of afferent and efferent glomerular arterioles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D007606, MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "juxtaglomerular complex morphology trait" EXACT [] is_a: VT:0000521 ! kidney cortex morphology trait [Term] id: VT:0002835 name: cranial suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fibrous joints between the bones of the head." [MeSH:D003393 "cranial sutures", MP:0002835] is_a: VT:0000438 ! skull morphology trait [Term] id: VT:0002836 name: chorion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outermost extraembryonic membrane." [MP:0002836] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0002840 name: lens fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the elongated cells of the crystalline lens of the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002840] synonym: "fiber cell morphology trait" EXACT [] is_a: VT:0001303 ! lens morphology trait [Term] id: VT:0002845 name: aorta mass namespace: Trait.ontology def: "The amount of matter in the main trunk of the systemic arteries." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "aortic weight" RELATED [] is_a: VT:0007090 ! aorta size trait [Term] id: VT:0002846 name: aorta capacity namespace: Trait.ontology def: "The volume of or amount contained in the main trunk of the systemic arteries." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "aorta volume" RELATED [] synonym: "aortic volume" RELATED [] is_a: VT:0007090 ! aorta size trait [Term] id: VT:0002847 name: glomerular filtration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the filtration of water out of the plasma through glomerular capillary walls into the Bowman's capsule." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003606 ! nephron physiology trait [Term] id: VT:0002851 name: blood sulfate amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this salt or ester of sulfuric acid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "blood sulfate level" RELATED [] synonym: "circulating sulfate level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0002855 name: cochlear ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "auditory ganglion morphology trait" EXACT [] synonym: "Corti ganglion morphology trait" EXACT [] synonym: "cranial ganglion VIII" BROAD [] synonym: "morphology trait of the spiral ganglion of vestibulocochlear (VIII) nerve" EXACT [] is_a: VT:0000960 ! sensory ganglion morphology trait is_a: VT:0001081 ! cranial ganglion morphology trait [Term] id: VT:0002856 name: vestibular ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of neurons associated with the vestibular part of the eighth cranial nerve that are involved in equilibration." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cranial ganglion VIII" BROAD [] synonym: "Scarpa ganglion morphology trait" EXACT [] synonym: "spiral ganglion morphology trait" EXACT [] synonym: "vestibular ganglion of the vestibulocochlear (VIII) nerve morphology trait" EXACT [] is_a: VT:0001081 ! cranial ganglion morphology trait [Term] id: VT:0002858 name: posterior semicircular canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior segment of the long bony tube of the labyrinth that is involved in the sense of balance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002858] is_a: VT:0002428 ! semicircular canal morphology trait [Term] id: VT:0002861 name: tail bud morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the primordial region of the embryo that arises to form the tail of the adult." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: in mouse it appears approximately ten days following conception as a short stump, and then initiates elongation and thinning in normal development trait is_a: VT:0006281 ! tail development trait [Term] id: VT:0002864 name: ocular fundus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels." [MP:0002864] is_a: VT:0005195 ! posterior eye segment morphology trait [Term] id: VT:0002869 name: blood anti-insulin autoantibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies to insulin." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "anti-insulin autoantibody concentration" RELATED [] synonym: "anti-insulin autoantibody level" RELATED [] is_a: VT:0003725 ! blood autoantibody amount [Term] id: VT:0002871 name: urine albumin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of this simple protein." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:cur "Rat Genome Database submission"] synonym: "urine albumin level" EXACT [] is_a: VT:0005160 ! urine protein amount [Term] id: VT:0002876 name: thyroid gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the endocrine gland located in the front and to the sides of the upper part of the trachea and which secretes thyroid hormone and calcitonin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "thyroid function" EXACT [] synonym: "thyroid physiology trait" EXACT [] is_a: VT:0002164 ! gland physiology trait [Term] id: VT:0002878 name: corticospinal tract morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fibers that arise from the cells within the cerebral cortex layer V, pass through the medullary pyramid, and descend into the gray matter of the spinal cord." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "corticobulbar tract morphology trait" EXACT [] synonym: "pyramidal tract morphology trait" EXACT [] is_a: VT:0000778 ! nervous system tract morphology trait [Term] id: VT:0002882 name: neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the functional cells of the nervous system that receive, conduct, and transmit impulses." [MP:0002882] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0002884 name: branchial arch development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the transient structures of the embryo that develop into regions of the head and neck in higher vertebrates; in fish and amphibians, they support the gills." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002884] synonym: "gill arch development trait" EXACT [] synonym: "pharyngeal arch development trait" EXACT [] synonym: "visceral arch development trait" EXACT [] is_a: VT:0003935 ! craniofacial development trait is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0002885 name: AMPA-mediated synaptic current namespace: Trait.ontology def: "The measured amplitude or duration of response to stimulation of AMPA receptors." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002886 ! glutamate receptor current trait [Term] id: VT:0002886 name: glutamate receptor current trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the measured amplitude or duration of response to stimulation of glutamanergic receptors." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002888 name: NMDA-mediated synaptic current trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the measured amplitude or duration of response to stimulation of NMDA receptors." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002886 ! glutamate receptor current trait [Term] id: VT:0002893 name: urine keto acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of organic acids containing a ketone group and a carboxylic acid group." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "urine keto acid level" EXACT [] is_a: VT:0001757 ! urine molecular composition trait [Term] id: VT:0002894 name: otolith morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the crystalline particles composed of calcium carbonate and a protein which adhere to the gelatinous membrane of the maculae of the utricle and saccule (otolithic membrane)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002894] synonym: "ear crystal morphology trait" EXACT [] synonym: "otoconia morphology trait" EXACT [] synonym: "statoconia morphology trait" EXACT [] synonym: "statolith morphology trait" EXACT [] is_a: VT:0002895 ! otolithic membrane morphology trait [Term] id: VT:0002895 name: otolithic membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the gelatinous membrane which is supported by the stereocilia of the hair cells of the maculae of the saccule and utriculus of the inner ear; adhering to its surface are numerous calciferous crystalline particles called otoliths (statoconia)." [MP:0002895] synonym: "membrana statoconiorum morphology trait" EXACT [] synonym: "statoconial membrane morphology trait" EXACT [] is_a: VT:0004425 ! otolith organ morphology trait [Term] id: VT:0002896 name: bone mineralization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which minerals (inorganic elements or compounds that have importance in body functions) are introduced into osseous tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000070 ! bone physiology trait [Term] id: VT:0002899 name: stamina trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the duration of activity (physical or mental) an individual can endure." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:1000152 ! wellness/fitness trait [Term] id: VT:0002900 name: urine phosphate amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of this salt or ester of phosphoric acid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:MS] synonym: "urine phosphate level" EXACT [] is_a: VT:0015086 ! urine mineral amount [Term] id: VT:0002903 name: blood parathyroid hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this regulator of calcium and phosphorus concentration." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "blood parathyroid hormone level" RELATED [] synonym: "circulating parathyroid hormone level" RELATED [] synonym: "circulating PTH level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0002907 name: parturition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of labor and delivery in female animals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "birth" EXACT [] xref: ATOL:0000443 is_a: VT:0003699 ! female reproductive system physiology trait [Term] id: VT:0002909 name: adrenal gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the endocrine glands positioned in relation to the superior end of each kidney." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] synonym: "adrenal gland function" EXACT [] synonym: "suprarenal gland physiology" EXACT [] is_a: VT:0002164 ! gland physiology trait [Term] id: VT:0002910 name: excitatory postsynaptic current namespace: Trait.ontology def: "The size or duration of currents detected in postsynaptic cells when an excitatory impulse arrives at the synapse causing depolarization." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "EPSCs" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002911 name: inhibitory postsynaptic potential namespace: Trait.ontology def: "The membrane potential detected in postsynaptic cells when an inhibitory impulse arrives at the synapse causing hyperpolarization." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "IPSP" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002912 name: excitatory postsynaptic potential namespace: Trait.ontology def: "The potential detected in postsynaptic cells when an excitatory impulse arrives at the synapse causing depolarization." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "EPSP" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002913 name: PNS synaptic transmission trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the communication from a neuron to a target across a synapse in the peripheral nervous system." [MP:0002913] synonym: "peripheral nervous system synaptic transmission" EXACT [] is_a: VT:0003635 ! synaptic transmission trait [Term] id: VT:0002914 name: endplate potential activity namespace: Trait.ontology def: "The degree of function or response of peripheral synapses to stimulation; these amplitudes are larger than central synapse potentials." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "EPP activity" EXACT [] is_a: VT:0002913 ! PNS synaptic transmission trait [Term] id: VT:0002915 name: synaptic depression trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the duration of the reduction of effectiveness of synaptic connections between neurons and target after repetitive stimulation." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002918 name: paired-pulse facilitation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the response of central synapses when activated twice in rapid succession." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] comment: indicative of defects in short-term plasticity due to lack of increase of neurotransmitter release at the second stimulus synonym: "PPF" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002921 name: post-tetanic potential namespace: Trait.ontology def: "The size or duration of potentials that persist after tetanic stimulation of central synapses." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "PTP" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002924 name: central nervous system synapse formation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of generating connections between an axon and effector tissue or neuron." [MP:0002924] synonym: "CNS synapse formation" EXACT [] is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0002928 name: bile duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the channels that secrete bile from the liver to the gall bladder and intestines." [RGD:cur "Rat Genome Database submission"] is_a: VT:0005083 ! biliary tract morphology trait [Term] id: VT:0002929 name: bile duct development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the channels that secrete bile from the liver to the gall bladder and intestines during their formation and differentiation." [RGD:cur "Rat Genome Database submission"] is_a: VT:0003943 ! hepatobiliary system development trait [Term] id: VT:0002932 name: joint morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the articulation point of two or more rigid skeletal components (bones, cartilage, or parts of a single bone)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:cur "Rat Genome Database submission"] is_a: VT:0001248 ! connective tissue morphology trait [Term] id: VT:0002937 name: synovial blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood flow to the synovial joint." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] is_a: VT:0000255 ! regional blood flow trait is_a: VT:0010064 ! connective tissue physiology trait [Term] id: VT:0002945 name: inhibitory postsynaptic current namespace: Trait.ontology def: "The size or duration of currents detected in postsynaptic cells when an inhibitory impulse arrives at the synapse causing hyperpolarization." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "IPSCs" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0002946 name: time of axon outgrowth namespace: Trait.ontology def: "The time required for an axon to extend from a neuron cell body and find the target." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:12040043] is_a: VT:0003651 ! axon outgrowth trait [Term] id: VT:0002948 name: neuron specification trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the developmental patterning of neurons." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:14723851] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0002949 name: neural crest cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the transient and migratory group of cells that emerge from the dorsal region of the neural tube and disperse to many peripheral locations, ultimately differentiating to form various tissues of the adult." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002151 ! neural tube morphology/development trait [Term] id: VT:0002950 name: neural crest cell migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement from point to point of the transient and migratory group of cells that emerge from the dorsal region of the neural tube and migrate to many peripheral locations, ultimately differentiating to form various tissues of the adult." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002949 ! neural crest cell development trait [Term] id: VT:0002961 name: axon guidance trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the signaling mechanisms that allow precise navigation and connections of axonal growth cones to effector tissues." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0006008 ! neurogenesis trait [Term] id: VT:0002970 name: white adipose morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "white adipose tissue morphology trait" EXACT [] synonym: "white fat morphology trait" EXACT [] is_a: VT:0000003 ! adipose morphology trait [Term] id: VT:0002971 name: brown adipose morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thermogenic form of adipose tissue that is composed of brown adipocytes." [MP:0000003] synonym: "brown adipose tissue morphology trait" EXACT [] synonym: "brown fat morphology trait" EXACT [] is_a: VT:0000003 ! adipose morphology trait [Term] id: VT:0002975 name: blood vessel smooth muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the nonstriated, involuntary muscle tissue of the structures that convey blood throughout the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D009131 "muscle, smooth, vascular", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "vascular smooth muscle size trait" EXACT [] is_a: VT:0005592 ! blood vessel smooth muscle morphology trait [Term] id: VT:0002982 name: germ cell migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement of a germ cell, a cell specialized to produce haploid gametes, from point to point." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0001919 ! reproductive system physiology trait [Term] id: VT:0002983 name: retinal ganglion cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the innermost nuclear layer of the retina, which projects axons through the optic nerve to the brain." [MP:0002983] synonym: "retinal ganglion cell number" EXACT [] is_a: VT:0000965 ! sensory neuron morphology trait is_a: VT:0005241 ! retinal ganglion layer morphology trait [Term] id: VT:0002985 name: urine calcium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of this bivalent element." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:MS] synonym: "urine calcium level" EXACT [] xref: ATOL:0001496 is_a: VT:0015086 ! urine mineral amount [Term] id: VT:0002987 name: urine solute amount namespace: Trait.ontology def: "The total proportion, quantity, or volume of substances dissolved in urine, total solute amount." [RGD:MS] is_a: VT:0001757 ! urine molecular composition trait [Term] id: VT:0002990 name: ureter length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the tube that conducts the urine from the renal pelvis to the bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003585 ! ureter size trait [Term] id: VT:0002991 name: sebaceous gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in any of the small, sacculated organs found within the dermis that normally secrete sebum." [MeSH:D012627 "sebaceous glands"] synonym: "sebaceous gland function" EXACT [] is_a: VT:0002164 ! gland physiology trait [Term] id: VT:0002992 name: sebaceous lipid secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of lipids onto the hair and skin from the sebaceous glands." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002991 ! sebaceous gland physiology trait [Term] id: VT:0002997 name: seminal gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the two folded, sac shaped glands that are diverticula of the ductus deferens." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] xref: ATOL:0000446 is_a: VT:0000655 ! sex gland size trait is_a: VT:0002059 ! seminal gland morphology trait [Term] id: VT:0002998 name: bone remodeling trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of the turnover of bone matrix that involves a balance of resorption and formation by osteoclasts and osteoblasts, respectively." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000070 ! bone physiology trait [Term] id: VT:0003005 name: hippocampus fimbria morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the flattened band of efferent fibers arising from the subiculum and medial border of the hippocampus, which then thickens to form the fornix and fibers of the hippocampal commissure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "fimbra hippocampus morphology trait" EXACT [] synonym: "hippocampal fimbria morphology trait" EXACT [] synonym: "hippocampus fimbra mrophology" EXACT [] is_a: VT:0000807 ! hippocampus morphology trait [Term] id: VT:0003006 name: hippocampus fornix morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the compact, white, heavily myelinated fiber bundle arising from the Ammon horn of the hippocampus in each cerebral hemisphere and projecting to the hypothalamus and the mammillary body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "fornix hippocampus morphology trait" EXACT [] synonym: "hippocampal fornix morphology trait" EXACT [] is_a: VT:0000807 ! hippocampus morphology trait [Term] id: VT:0003009 name: cytokine secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of any of the non-antibody proteins made by inflammatory leukocytes and some non-leukocytic cells that affect the behavior of other cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: ATOL:0000447 is_a: VT:0010031 ! immune serum protein secretion trait [Term] id: VT:0003011 name: dark adaptation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the time required for the eye to recover its sensitivity in the dark following exposure to bright lights." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] is_a: VT:0005253 ! eye physiology trait [Term] id: VT:0003014 name: kidney medulla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the inner portion of the kidney consisting of the renal pyramids." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:14983020] synonym: "renal medulla morphology trait" EXACT [] is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0003015 name: blood bicarbonate amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of inorganic salts that contain the -HCO3 radical, which are an important factor in regulating the pH of the blood." [MeSH:D001639 "bicarbonates", RGD:cur "Rat Genome Database submission"] synonym: "blood bicarbonate level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0003018 name: blood chloride amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of chlorine salts." [RGD:cur "Rat Genome Database submission"] synonym: "blood chloride level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0003027 name: blood acidity-alkalinity balance trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of the buffer systems of the blood in combination with the respiratory and renal systems that control the relative acidity or alkalinity of the blood, as measured by the concentration of the hydrogen ion." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:cur "Rat Genome Database submission"] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0003044 name: basement membrane development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the extracellular supportive tissue closely adjacent to the basal surface of the epithelium of muscle cells, fat cells and Schwann cells, which is comprised of type IV collagen, laminin, and sulfated proteoglycans and other components." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "basement lamina formation" EXACT [] synonym: "basement membrane formation" EXACT [] is_a: VT:0010065 ! connective tissue development trait [Term] id: VT:0003047 name: thoracic vertebra morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bony segments of the vertebral column located anterior to the lumbar vertebrae and posterior to the cervical vertebrae; they articulate with the ribs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000137 ! vertebra morphology trait is_a: VT:0004134 ! thorax morphology trait is_a: VT:0010092 ! thoracic cage morphology trait [Term] id: VT:0003051 name: tail shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the appendage at the caudal end of the vertebral column." [MP:0002111] is_a: VT:0002111 ! tail morphology trait [Term] id: VT:0003055 name: epiphyseal plate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cartilaginous center of ossification on the long bones permitting growth of the bone in both directions during development." [MP:0003055] synonym: "epiphysial plate morphology trait" EXACT [] synonym: "growth plate morphology trait" EXACT [] is_a: VT:0000163 ! cartilage morphology trait is_a: VT:0003723 ! long bone morphology trait is_a: VT:0010005 ! bone development trait [Term] id: VT:0003056 name: hyoid bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the U-shaped bone lying between the mandible and the larynx that supports the tongue muscles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003056] synonym: "lingual bone morphology trait" EXACT [] is_a: VT:0002116 ! craniofacial bone morphology trait [Term] id: VT:0003057 name: epicardium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the visceral layer of the pericardium that surrounds and attaches to all the surfaces of the heart." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "lamina visceralis pericardii morphology trait" EXACT [] synonym: "morphology trait of the visceral layer of serous pericardium" EXACT [] xref: MP:0003057 is_a: VT:0000288 ! pericardium morphology trait [Term] id: VT:0003065 name: hepatic copper amount namespace: Trait.ontology def: "The proportion, quantity, or volume of copper present in liver tissue." [RGD:cur "Rat Genome Database submission"] synonym: "hepatic copper level" EXACT [] synonym: "liver copper concentration" EXACT [] is_a: VT:0000609 ! liver physiology trait is_a: VT:0003952 ! copper amount [Term] id: VT:0003069 name: superior semicircular canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the upper, superior segment of the long bony tube of the labyrinth that is involved in the sense of balance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003069] synonym: "anterior semicircular canal morphology trait" EXACT [] is_a: VT:0002428 ! semicircular canal morphology trait [Term] id: VT:0003072 name: metatarsus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bones of the lower/hindlimbs that articulate proximally with the tarsus and distally with the phalanges." [ISBN:978-0028454405 "Greene, EC Anatomy of the Rat"] synonym: "metatarsal bone morphology trait" EXACT [] is_a: VT:0000556 ! hindlimb morphology trait is_a: VT:0002115 ! skeleton extremities morphology trait is_a: VT:0010105 ! hindlimb long bone morphology trait [Term] id: VT:0003073 name: metacarpus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bones of the forelimbs that articulate proximally with the carpal bones and distally with the phalanges." [ISBN:978-0028454405 "Greene, EC Anatomy of the Rat"] synonym: "metacarpal bone morphology trait" EXACT [] is_a: VT:0000550 ! forelimb morphology trait is_a: VT:0002115 ! skeleton extremities morphology trait is_a: VT:0010104 ! forelimb long bone morphology trait [Term] id: VT:0003074 name: metacarpus quantity namespace: Trait.ontology def: "The proportion or number of bones of the forelimbs that articulate proximally with the carpal bones and distally with the phalanges." [ISBN:978-0028454405 "Greene, EC Anatomy of the Rat"] synonym: "metacarpal bone number" EXACT [] synonym: "metacarpus number" EXACT [] is_a: VT:0003073 ! metacarpus morphology trait [Term] id: VT:0003081 name: soleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the superficial flat broad muscle of the calf that is responsible for plantar flexion of the foot." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0010107 ! hindlimb muscle morphology trait [Term] id: VT:0003082 name: gastrocnemius morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the two-headed large muscle of the posterior portion of the lower hindlimb, the most superficial of the calf muscles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0010107 ! hindlimb muscle morphology trait [Term] id: VT:0003083 name: tibialis anterior morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscle of the shin that is responsible for dorsiflexion and inversion of the foot." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0010107 ! hindlimb muscle morphology trait [Term] id: VT:0003084 name: skeletal muscle fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the skeletal muscle fibers, the large multinucleated cells that make up the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "skeletal muscle cell morphology trait" EXACT [] xref: ATOL:0000448 is_a: VT:0000759 ! skeletal muscle morphology trait is_a: VT:0004087 ! muscle cell morphology trait [Term] id: VT:0003085 name: egg cylinder morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the transient cup-like structure of the epiblast that consists of a single layer of embryonic cells." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0003088 name: prepulse inhibition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of a relatively mild stimulus to suppress the response to a strong, startle-eliciting stimulus." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15184899] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0003090 name: muscle progenitor cell migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement from point to point of cells that will develop into muscle cells." [MP:0003090] xref: ATOL:0000449 is_a: VT:0000729 ! skeletal myogenesis trait [Term] id: VT:0003092 name: corneal stroma thickness namespace: Trait.ontology def: "The distance between the surfaces of the lamellated connective tissue layer of the cornea." [MP:0005300] is_a: VT:0005300 ! corneal stroma morphology trait is_a: VT:0005543 ! cornea thickness trait [Term] id: VT:0003093 name: anterior stroma morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior segment of the lamellated connective tissue layer of the cornea." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MP:0003093] is_a: VT:0005300 ! corneal stroma morphology trait [Term] id: VT:0003094 name: posterior stroma morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior segment of the lamellated connective tissue layer of the cornea." [MP:0003094] is_a: VT:0005300 ! corneal stroma morphology trait [Term] id: VT:0003095 name: corneal stroma development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the lamellated connective tissue layer of the cornea during its formation or differentiation." [MP:0003095] is_a: VT:0001286 ! eye development trait [Term] id: VT:0003096 name: cornea light-scattering trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the transmission of light through the cornea." [MP:0003096] synonym: "cornea light scattering trait" EXACT [] synonym: "corneal light scattering trait" EXACT [] synonym: "corneal light-scattering trait" EXACT [] is_a: VT:0005253 ! eye physiology trait [Term] id: VT:0003099 name: retinal attachment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the connection of the retina from the underlying inner wall of the eye." [MP:0003099] is_a: VT:0001325 ! retina morphology trait [Term] id: VT:0003102 name: sclera thickness namespace: Trait.ontology def: "The distance between the surfaces of the fibrous, outer envelope of the eyeball." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:12766039] is_a: VT:0002698 ! sclera morphology trait [Term] id: VT:0003104 name: skull size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the bones surrounding the brain and bones of the lower face and jaws." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000438] synonym: "cranium size trait " EXACT [] is_a: VT:0000438 ! skull morphology trait [Term] id: VT:0003105 name: heart atrium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the upper chamber(s) of the heart that receive blood from the vasculature and send blood into a ventricle." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac atrial morphology trait" RELATED [] synonym: "cardiac atrium morphology trait" RELATED [] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0003107 name: response to novelty trait namespace: Trait.ontology def: "any measurable or observable characteristic related to responses to a new stimulus or situation" [MGI:smb] subset: slim_chkn subset: slim_pig is_a: VT:0002572 ! emotion/affect behavior trait [Term] id: VT:0003110 name: processus brevis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the part of the malleus that contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding this cartilaginous nodule." [MP:0003110] synonym: "lateral process of malleus morphology trait" EXACT [] synonym: "malleal processus brevis morphology trait" EXACT [] is_a: VT:0000029 ! malleus morphology trait [Term] id: VT:0003112 name: parathyroid gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the two small, paired endocrine glands, usually found embedded in the connective tissue capsule on the posterior surface of the thyroid gland; they secrete parathyroid hormone (PTH) that regulates calcium and phosphorus metabolism." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000678 ! parathyroid gland morphology trait [Term] id: VT:0003114 name: parathyroid gland pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in either of the two small, paired endocrine glands, usually found embedded in the connective tissue capsule on the posterior surface of the thyroid gland; they secrete parathyroid hormone (PTH) that regulates calcium and phosphorus metabolism." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000678 ! parathyroid gland morphology trait [Term] id: VT:0003115 name: respiratory system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the system responsible for the exchange of oxygen and carbon dioxide with the environment during its formation and differentiation." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0005388 ! respiratory system trait [Term] id: VT:0003117 name: tracheal-esophageal septation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to separation of the trachea and esophagus during development." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003115 ! respiratory system development trait is_a: VT:0003119 ! gastrointestinal system development trait [Term] id: VT:0003118 name: tracheal-bronchial branching morphogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the repeated division of the trachea and bronchi during development of the lung." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15305287] is_a: VT:0003115 ! respiratory system development trait is_a: VT:0003119 ! gastrointestinal system development trait [Term] id: VT:0003119 name: gastrointestinal system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the system that converts ingested food to nutrients and energy during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000776 ! alimentary system trait [Term] id: VT:0003120 name: tracheal cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cartilaginous structures that support the tube descending from the larynx and branching into the right and left main bronchi." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000163 ! cartilage morphology trait is_a: VT:0002282 ! trachea morphology trait [Term] id: VT:0003125 name: cloaca septation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the separation of the single opening of the digestive, urinary, and reproductive tracts (cloaca) into multiple isolated openings during development." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15223334] is_a: VT:0003119 ! gastrointestinal system development trait is_a: VT:0003936 ! reproductive system development trait is_a: VT:0003942 ! urinary system development trait is_a: VT:0015067 ! surface structure development trait [Term] id: VT:0003126 name: vulva morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the external genitalia of the female." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000450 is_a: VT:0001119 ! female reproductive system morphology trait [Term] id: VT:0003127 name: clitoris morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small, erectile body located at the anterior end of the vulva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000451 is_a: VT:0003126 ! vulva morphology trait [Term] id: VT:0003133 name: early pro-B cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the B lymphocyte lineage that undergo D-J rearrangement of the immunoglobulin heavy chain." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15199164] synonym: "number of early pro-B cells" EXACT [] is_a: VT:0005019 ! early pro-B cell morphology trait is_a: VT:0008208 ! pro-B cell quantity [Term] id: VT:0003134 name: late pro-B cell quantity namespace: Trait.ontology def: "The proportion or number of the cells in the B lymphocyte lineage that undergo V-DJ rearrangement of the immunoglobulin heavy chain." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15199164] synonym: "number of late pro-B cells" EXACT [] is_a: VT:0005020 ! late pro-B cell morphology trait is_a: VT:0008208 ! pro-B cell quantity [Term] id: VT:0003135 name: reticulocyte quantity namespace: Trait.ontology def: "The proportion or number of the immature erythrocytes containing a basophilic cytoplasmic network." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000172 ! bone marrow cell quantity is_a: VT:0002424 ! reticulocyte morphology trait [Term] id: VT:0003140 name: heart atrium size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the upper chamber(s) of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "atrial size trait" RELATED [] is_a: VT:0003105 ! heart atrium morphology trait is_a: VT:0005406 ! heart size trait [Term] id: VT:0003143 name: otolith size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the crystalline calciferous particles adhering to the otolithic membrane." [MP:0003143] synonym: "ear crystal size trait" EXACT [] synonym: "otoconia size trait" EXACT [] synonym: "statoconia size trait" EXACT [] synonym: "statolith size trait" EXACT [] is_a: VT:0002894 ! otolith morphology trait [Term] id: VT:0003144 name: otolith quantity namespace: Trait.ontology def: "The proportion or number of the crystalline calciferous particles adhering to the otolithic membrane." [MP:0003144] synonym: "number of otoconia" EXACT [] synonym: "number of otoliths" EXACT [] synonym: "otolith number" EXACT [] is_a: VT:0002894 ! otolith morphology trait [Term] id: VT:0003145 name: otolithic membrane attachment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the connection of the otolithic (otoconial) membrane to the underlying neuroepithelium." [MP:0003145] is_a: VT:0002895 ! otolithic membrane morphology trait [Term] id: VT:0003148 name: cochlear coil quantity namespace: Trait.ontology def: "The proportion or number of turns in the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003148] synonym: "cochlear coil number" EXACT [] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0003149 name: tectorial membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the overlaying membrane of cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals." [MP:0003149] is_a: VT:0003169 ! scala media morphology trait [Term] id: VT:0003150 name: tectorial membrane attachment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the connection of the overlaying membrane of the cochlear duct to the cochlear epithelium or spiral limbus." [MP:0003149, MP:0003150] is_a: VT:0003149 ! tectorial membrane morphology trait [Term] id: VT:0003151 name: tunnel of Corti morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151] is_a: VT:0000042 ! organ of Corti morphology trait [Term] id: VT:0003154 name: soft palate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the musculomembranous fold that partly separates the mouth and pharynx, located behind the hard palate." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "velum morphology trait" EXACT [] synonym: "velum palatinum morphology trait" EXACT [] is_a: VT:0003755 ! palate morphology trait [Term] id: VT:0003156 name: leukocyte migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement of white blood cells from point to point." [MGI:acv "Alicia Valenzuela, Genetic Resources Curator", MGI:GO "Definition from the Gene Ontology"] synonym: "leucocyte migration" EXACT [] synonym: "leucocyte trafficking" EXACT [] synonym: "leukocyte homing" NARROW [] synonym: "leukocyte trafficking" EXACT [] synonym: "lymphocyte migration/homing" NARROW [] xref: GO:0050900 "leukocyte migration" is_a: VT:0002442 ! leukocyte physiology trait [Term] id: VT:0003159 name: esophageal smooth muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nonstriated, involuntary muscle tissue lining the portion of the alimentary canal between the pharynx and stomach." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000767 ! smooth muscle morphology trait [Term] id: VT:0003160 name: esophagus development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the part of the digestive canal through which food passes from the pharynx to the stomach during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "esophageal development trait" EXACT [] is_a: VT:0003119 ! gastrointestinal system development trait [Term] id: VT:0003162 name: lateral semicircular canal size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lateral long bony tube of the labyrinth that is involved in the sense of balance." [MP:0000037] is_a: VT:0000037 ! lateral semicircular canal morphology trait [Term] id: VT:0003164 name: posterior semicircular canal size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the posterior segment of the long bony tube of the labyrinth that is involved in the sense of balance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0002858] is_a: VT:0002858 ! posterior semicircular canal morphology trait [Term] id: VT:0003166 name: superior semicircular canal size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the upper, superior segment of the long bony tube of the labyrinth that is involved in the sense of balance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003069] synonym: "anterior semicircular canal size trait" EXACT [] is_a: VT:0003069 ! superior semicircular canal morphology trait [Term] id: VT:0003167 name: scala tympani morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the division of the spiral canal of the cochlea lying on the basal side of the spiral lamina." [MP:0003167] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0003168 name: scala vestibuli morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the division of the spiral canal of the cochlea lying on the apical side of the spiral lamina and vestibular membrane." [MP:0003168] synonym: "perilymphatic space morphology trait" EXACT [] synonym: "vestibular canal morphology trait" EXACT [] synonym: "vestibular chamber morphology trait" EXACT [] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0003169 name: scala media morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the division of the spiral canal of the cochlea that contains the organ of Corti (the neuroepithelial receptor organ for hearing)." [MP:0003169] synonym: "cochlear chamber morphology trait" EXACT [] synonym: "cochlear duct morphology trait" EXACT [] synonym: "Lowenberg scala morphology trait" EXACT [] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0003179 name: platelet quantity namespace: Trait.ontology def: "The proportion or number of the disc-like fragments of megakaryocytes that are found in the blood and function in clotting." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "platelet count" EXACT [] synonym: "platelet number" EXACT [] is_a: VT:0000237 ! blood cell quantity is_a: VT:0010183 ! platelet morphology trait [Term] id: VT:0003180 name: pulmonary endothelial cell surface area namespace: Trait.ontology def: "The extent of the semipermeable membrane that encloses the cytoplasm of a pulmonary endothelial cell." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "pulmonary endothelial cell surface area" EXACT [] is_a: VT:0000484 ! pulmonary artery morphology trait is_a: VT:0004007 ! lung blood vessel morphology trait is_a: VT:0006055 ! blood vessel endothelial cell morphology trait [Term] id: VT:0003185 name: angiotensin I-converting enzyme activity namespace: Trait.ontology def: "The degree of function or response of the exopeptidase that catalyses the conversion of angiotensin I to angiotensin II, a potent vasoconstrictor, and is also involved in the inactivation of bradykinin." [RGD:cur "Rat Genome Database submission"] synonym: "ACE activity" EXACT [] is_a: VT:0005584 ! enzyme/coenzyme activity trait [Term] id: VT:0003202 name: neuron apoptosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which neurons undergo programmed cell death." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0003208 name: neuromere morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the segments of the developing neural tube." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002151 ! neural tube morphology/development trait [Term] id: VT:0003209 name: pulmonary elastic fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a slender connective tissue fiber in pulmonary tissue characterized by great elasticity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:cur "Rat Genome Database submission"] is_a: VT:0001175 ! lung morphology trait [Term] id: VT:0003210 name: heart elastic fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the slender connective tissue fiber in cardiac tissue characterized by great elasticity." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "cardiac elastic fiber morphology trait" RELATED [] xref: MP:0003210 is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0003211 name: aorta elastic tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the slender connective tissue fiber in aortic tissue characterized by great elasticity." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "aortic elastic fiber morphology trait" RELATED [] is_a: VT:0000272 ! aorta morphology trait is_a: VT:0006083 ! blood vessel elastic tissue morphology trait [Term] id: VT:0003228 name: sinus venosus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cavity at the caudal end of the embryonic cardiac tube in which the veins from the intra- and extraembryonic circulatory arcs unite; in the adult this becomes the portion of the right atrium known as the sinus of the vena cava." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000267 ! heart development trait [Term] id: VT:0003229 name: yolk sac vasculature morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the vessels of the yolk sac." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15447674] synonym: "vitelline vascular morphology trait" EXACT [] is_a: VT:0001718 ! yolk sac morphology trait [Term] id: VT:0003231 name: placenta vascular morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the vessels of the organ of metabolic interchange between fetus and mother." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003231] synonym: "placental vascular morphology trait" EXACT [] is_a: VT:0001711 ! placenta morphology trait [Term] id: VT:0003232 name: forebrain development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the anterior primitive cerebral vesicle during its formation and differentiation; this is the most rostral of three primary vesicles of the embryonic neural tube." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: GO:0030900 "forebrain development" is_a: VT:0000913 ! brain development trait [Term] id: VT:0003235 name: alisphenoid morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of either of the broad curved wing-like expanses on each side of the sphenoid bone in adults; may exist independently in the young." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003235] synonym: "alisphenoid bone morphology trait" EXACT [] is_a: VT:0000104 ! sphenoid bone morphology trait [Term] id: VT:0003236 name: lens capsule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the elastic, clear, membrane-like structure, that is the outermost layer of the lens." [MP:0003236] is_a: VT:0001303 ! lens morphology trait [Term] id: VT:0003237 name: lens epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the one or more of the layers of epithelial cells in the lens." [MP:0003237] is_a: VT:0001303 ! lens morphology trait [Term] id: VT:0003240 name: hippocampus neuron quantity namespace: Trait.ontology def: "The proportion or number of neurons in the deep lying structure of the cerebrum involved with memory storage and spatial navigation." [ISBN:0-12-402035-6 "Kaufman, MH The Atlas of Mouse Development"] synonym: "hippocampal neuron number" EXACT [] synonym: "hippocampus neuron number" EXACT [] is_a: VT:0015026 ! neuron quantity is_a: VT:0015046 ! hippocampus neuron morphology trait [Term] id: VT:0003241 name: cerebral cortex neuron quantity namespace: Trait.ontology def: "The proportion or number of neurons in the cerebral cortex region of the brain." [RGD:cur "Rat Genome Database submission"] comment: Note that charles w. considers this distinct from degeneration synonym: "cerebral cortex neuron number" EXACT [] is_a: VT:0000788 ! cerebral cortex morphology trait [Term] id: VT:0003242 name: basal ganglion neuron quantity namespace: Trait.ontology def: "The proportion or number of neurons in the group of nuclei associated with the ability to carry out willed movements, including the caudate, putamen, nucleus accumbens, globus pallidus, substantia nigra, and subthalamic nucleus." [MP:0006007, RGD:cur "Rat Genome Database submission"] comment: Note that Charles W. considers this distinct from degeneration synonym: "basal ganglion neuron number" EXACT [] is_a: VT:0006007 ! basal ganglion morphology trait [Term] id: VT:0003243 name: dopaminergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that utilize dopamine as a neurotransmitter." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0003244 name: dopaminergic neuron quantity namespace: Trait.ontology def: "The proportion or number of neurons that utilize dopamine as a neurotransmitter." [RGD:cur "Rat Genome Database submission"] synonym: "dopaminergic neuron number" EXACT [] is_a: VT:0003243 ! dopaminergic neuron morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0003245 name: GABA neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that utilize gamma-aminobutyric acid as a neurotransmitter." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0003246 name: GABA neuron quantity namespace: Trait.ontology def: "The proportion or number of neurons that utilize gamma-aminobutyric acid as a neurotransmitter." [RGD:cur "Rat Genome Database submission"] synonym: "GABA neuron number" EXACT [] is_a: VT:0003245 ! GABA neuron morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0003247 name: glutaminergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that utilize glutamate as a neurotransmitter." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0003248 name: glutaminergic neuron quantity namespace: Trait.ontology def: "The proportion or number of neurons that utilize glutamate as a neurotransmitter." [RGD:cur "Rat Genome Database submission"] synonym: "glutamate neuron number" EXACT [] synonym: "glutaminergic neuron number" EXACT [] is_a: VT:0003247 ! glutaminergic neuron morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0003249 name: muscle free fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons in the contractile tissue that effects movement; they are saturated and unsaturated." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:cur "Rat Genome Database submission"] synonym: "muscle fatty acid concentration" EXACT [] synonym: "muscle free fatty acid (FFA) level" EXACT [] is_a: VT:0010021 ! muscle molecular composition trait is_a: VT:0010046 ! fatty acid amount is_a: VT:1000479 ! muscle lipid amount [Term] id: VT:0003252 name: bile duct physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the channels that secrete bile from the liver to the gall bladder and intestines." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] is_a: VT:0002139 ! hepatobiliary system physiology trait [Term] id: VT:0003253 name: bile duct size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the bile ducts." [NCBI:matt "Matthew Mailman"] is_a: VT:0002928 ! bile duct morphology trait [Term] id: VT:0003257 name: abdominal wall morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the margins that enclose the abdominal cavity; the major part is muscular but also includes skin, subcutaneous fat, fascia and the parietal peritoneum." [NCBI:matt "Matthew Mailman"] is_a: VT:0003385 ! body wall morphology trait [Term] id: VT:0003271 name: duodenum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the first division of the small intestine that extends from the pyloris to the junction with the jejunum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000454 is_a: VT:0000496 ! small intestine morphology trait [Term] id: VT:0003283 name: digestive organ orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the alimentary tract organs in relation to each other or to the body." [NCBI:matt "Matthew Mailman"] is_a: VT:0000462 ! gastrointestinal system morphology trait [Term] id: VT:0003284 name: large intestine orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the large intestinal tract in relation to other organs or to the body." [NCBI:matt "Matthew Mailman"] is_a: VT:0000489 ! large intestine morphology trait is_a: VT:0003283 ! digestive organ orientation trait [Term] id: VT:0003289 name: intestinal peristalsis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the intestinal movement characterized by waves of alternate circular contraction and relaxation of the muscular walls of the bowel that move bowel contents forward." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] is_a: VT:0001664 ! digestion trait [Term] id: VT:0003308 name: cochlea sensory epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the epithelial cell layer containing the sensory hair cells and their associated sensory nerve terminals." [MP:0003308] synonym: "cochlear neuroepithelium morphology trait" EXACT [] synonym: "inner ear neuroepithelium morphology trait" EXACT [] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0003309 name: modiolus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the conic central core of spongy bone about which the spiral canal turns." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003309] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0003310 name: modiolus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the central conical bony pillar of the cochlea." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:11152640] is_a: VT:0003309 ! modiolus morphology trait [Term] id: VT:0003311 name: urine amino acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of the organic compounds, which, when polymerized, form proteins." [ISBN:0716730510 "Biochemistry, 5th Edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "urine amino acid level" EXACT [] is_a: VT:0001757 ! urine molecular composition trait [Term] id: VT:0003315 name: perineum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the area between the genital organs and the anus that lies beneath the pelvic diaphragm." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] xref: ATOL:0000455 is_a: VT:0002160 ! reproductive system morphology trait [Term] id: VT:0003328 name: portal blood pressure namespace: Trait.ontology def: "The arterial blood pressure in the hepatic portal system." [NCBI:matt "Matthew Mailman"] is_a: VT:0000609 ! liver physiology trait [Term] id: VT:0003330 name: auditory tube morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the tube connecting the tympanic cavity and the nasopharynx that allows equalization of pressure between the tympanic cavity and the environment." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003330] synonym: "Eustachian tube morphology trait" EXACT [] synonym: "pharyngotympanic tube morphology trait" EXACT [] is_a: VT:0000049 ! middle ear morphology trait [Term] id: VT:0003339 name: pancreatic beta cell quantity namespace: Trait.ontology def: "The proportion or number of the cells of the pancreas that secrete insulin." [NCBI:matt "Matthew Mailman"] is_a: VT:0005217 ! pancreatic beta cell morphology trait [Term] id: VT:0003345 name: rib quantity namespace: Trait.ontology def: "The proportion or number of the elongated, curved bones forming the bony wall of the chest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] synonym: "number of ribs" EXACT [] synonym: "rib number" EXACT [] is_a: VT:0000150 ! rib morphology trait [Term] id: VT:0003346 name: pectoralis muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the two muscles that make up the upper and fore part of the chest that adduct and rotate the forelimb and lift the ribs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D010369 "pectoralis muscles", NCBI:matt "Matthew Mailman"] synonym: "pectoral muscle morphology trait" EXACT [] is_a: VT:0000759 ! skeletal muscle morphology trait [Term] id: VT:0003349 name: blood renin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this enzyme which is secreted by the kidney; it cleaves a bond in angiotensionogen to generate angiotensin I." [NCBI:matt "Matthew Mailman"] synonym: "blood renin level" RELATED [] is_a: VT:0001570 ! blood enzyme amount [Term] id: VT:0003351 name: blood thyroid hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of hormones in the blood that are synthesized and secreted by the thyroid." [NCBI:matt "Matthew Mailman"] synonym: "blood thyroid hormone level" RELATED [] synonym: "circulating thyroid hormone level" RELATED [] xref: ATOL:0000456 is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0003356 name: luteinization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the transformation of the mature ovarian follicle and its theca interna into a corpus luteum after ovulation." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:10490638, PMID:9303532] is_a: VT:0003507 ! ovary physiology trait [Term] id: VT:0003357 name: granulosa cell differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which a relatively unspecialized cell acquires the specialized features of a granulosa cell, a supporting cell for the developing female gamete in the ovary of mammals." [MGI:GO "Definition from the Gene Ontology", PMID:9303532] xref: GO:0060014 is_a: VT:0010043 ! ovarian follicle physiology trait [Term] id: VT:0003358 name: hypaxial muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscles derived from the lateral myotome and lateral portion of the dermomyotome; these include the thoracic intercostal and abdominal muscles, limb muscles and superficial back muscles, as well as the diaphragm and the tip of the tongue." [ISBN:0-87893-258-5 "Developmental Biology, 7th Edition"] synonym: "limb muscle morphology trait" NARROW [] is_a: VT:0000759 ! skeletal muscle morphology trait [Term] id: VT:0003359 name: hypaxial muscle cell quantity namespace: Trait.ontology def: "The proportion or number of cells in any of the muscles derived from the lateral myotome and lateral portion of the dermomyotome; these include the thoracic intercostal and abdominal muscles, limb muscles and superficial back muscles, as well as the diaphragm and the tip of the tongue." [PMID:0-87893-258-5 "Developmental Biology, 7th Edition"] synonym: "hypaxial muscle cell number" RELATED [] is_a: VT:0003358 ! hypaxial muscle morphology trait [Term] id: VT:0003361 name: blood gonadotropin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the peptide hormones that stimulate gonadal functions such as gametogenesis and sex steroid hormone production in the ovary and the testis." [MP:0003361] synonym: "blood gonadotropin level" RELATED [] synonym: "circulating gonadotropin level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0003366 name: blood glucocorticoid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the corticosteroids regulating carbohydrate metabolism and exhibiting anti-inflammatory activity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] synonym: "circulating glucocorticoid level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0003369 name: blood estrogen amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of any substance that causes development of the female reproductive organs and secondary sexual characteristics." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] synonym: "blood estrogen level" RELATED [] synonym: "circulating estrogen level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0003372 name: blood mineralcorticoid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of corticosteroids that influence water and electrolyte metabolism and balance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] synonym: "circulating mineralcorticoid level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0003377 name: menarche initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of menstrual cycles." [NCBI:matt "Matthew Mailman"] synonym: "onset of menarche " EXACT [] is_a: VT:0001938 ! time of sexual maturation trait [Term] id: VT:0003381 name: vitreal fibrous tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fibrous tissue in the vitreous body of the eye." [MP:0003381] is_a: VT:0002699 ! vitreous body morphology trait [Term] id: VT:0003383 name: gluconeogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of glucose from non-carbohydrates, such as proteins or fat." [PMID:15454086] xref: GO:0006094 "gluconeogenesis" is_a: VT:0015088 ! glucose metabolism trait [Term] id: VT:0003384 name: ventral body wall morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior portion of a human body or the lower surface of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0003385 ! body wall morphology trait [Term] id: VT:0003385 name: body wall morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0004134 ! thorax morphology trait [Term] id: VT:0003396 name: embryonic hematopoiesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the development of primarily large, nucleated erythroblasts as well as some megakaryocytes and primitive macrophages occurring in blood islands in the yolk sac, generally occurs from E7-E11 in the mouse and through 10 weeks in humans." [MP:0003396] synonym: "primitive hematopoiesis" EXACT [] is_a: VT:0005380 ! embryonic development trait is_a: VT:0010182 ! blood cell development trait [Term] id: VT:0003398 name: skeletal muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of one or more of the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15485899] is_a: VT:0000759 ! skeletal muscle morphology trait [Term] id: VT:0003399 name: skeletal muscle fiber size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the skeletal muscle fibers, the large multinucleated cells that make up the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15485899] synonym: "skeletal muscle cell size trait" EXACT [] xref: ATOL:0000458 is_a: VT:0003084 ! skeletal muscle fiber morphology trait is_a: VT:0003398 ! skeletal muscle size trait [Term] id: VT:0003401 name: tail bud size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the primordial region of the embryo that arises to form the tail of the adult." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0002861 ! tail bud morphology trait [Term] id: VT:0003402 name: liver mass namespace: Trait.ontology def: "The amount of matter in the bile-secreting exocrine gland, which is important for detoxification; for fat, carbohydrate, and protein metabolism; and for glycogen storage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "weight of the liver" EXACT [] xref: ATOL:0000459 is_a: VT:0000599 ! liver size trait [Term] id: VT:0003405 name: platelet shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of disc-like fragments of megakaryocytes that are found in the blood and function in clotting." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010183 ! platelet morphology trait [Term] id: VT:0003407 name: central nervous system regeneration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of central nervous system tissue to regenerate following injury or disease." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "CNS regeneration" EXACT [] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0003409 name: hypertrophic chondrocyte zone thickness namespace: Trait.ontology def: "The distance between the surfaces of the layer of the epiphyseal plate where no cell division occurs and chondrocytes begin to terminally differentiate." [http://www.wheelessonline.com "Wheeless' Textbook of Orthopaedics", RGD:MS] synonym: "hypertrophic chondrocyte zone width" EXACT [] is_a: VT:0000165 ! hypertrophic chondrocyte zone morphology trait [Term] id: VT:0003412 name: afterhyperpolarization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the currents that follow an action potential and influence firing frequency and neuronal integration." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15190101] synonym: "AHP" EXACT [] is_a: VT:0002272 ! nervous system electrophysiology trait [Term] id: VT:0003419 name: endochondral ossification initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of bone formation in bones that form from cartilage." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15537544, RGD:MS] synonym: "onset of endochondral bone ossification" EXACT [] synonym: "onset of endochondral osteogenesis" EXACT [] is_a: VT:0000060 ! ossification initiation trait [Term] id: VT:0003420 name: intramembranous ossification initiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of bone formation in bones that form without a cartilaginous intermediate, including the cranium and clavicle." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15537544, RGD:MS] synonym: "onset of intramembranous bone ossification" EXACT [] synonym: "onset of intramembranous osteogenesis" EXACT [] is_a: VT:0000060 ! ossification initiation trait [Term] id: VT:0003421 name: thyroid gland development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the endocrine gland located in the front and to the sides of the upper part of the trachea and which secretes thyroid hormone and calcitonin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015037 ! gland development trait [Term] id: VT:0003424 name: neuronal precursor differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which relatively unspecialized cells acquire the specialized features of neurons." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15496443] is_a: VT:0006008 ! neurogenesis trait [Term] id: VT:0003425 name: optic vesicle development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the hollow outgrowth from the lateral aspects of the embryonic forebrain from which the retina and optic nerve develop." [MP:0003425] synonym: "optic vesicle formation" EXACT [] is_a: VT:0001286 ! eye development trait [Term] id: VT:0003431 name: parathyroid gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the paired endocrine gland that normally produces parathyroid hormone (PTH) that regulates calcium and phosphorus metabolism." [NCBI:matt "Matthew Mailman"] is_a: VT:0002164 ! gland physiology trait [Term] id: VT:0003437 name: carotid body morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a small epithelioid structure consisting of a small cluster of chemoreceptive and supporting cells located near the bifurcation of the common carotid artery that serves as a chemoreceptive organ that senses the pH, carbon dioxide, and oxygen concentrations in the blood and plays a crucial role in their homeostatic control." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0015095 ! sensory trait [Term] id: VT:0003442 name: blood glycerol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma this trihydroxy alcohol, the backbone of lipids, which is important for gluconeogenesis during starvation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "blood glycerol level" RELATED [] is_a: VT:0003949 ! blood lipid amount [Term] id: VT:0003444 name: neurotransmitter uptake trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the reabsorption of endogenous signaling molecules normally taken in by neurons that alter the behavior of neurons or effector cells." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:12815026] is_a: VT:0002204 ! neurotransmitter amount [Term] id: VT:0003446 name: kidney cell quantity namespace: Trait.ontology def: "The proportion or number of cells in one or both of the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "kidney cell number" EXACT [] is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0003449 name: intestinal goblet cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the unicellular mucin-secreting glands of the intestine." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15591354] is_a: VT:0000511 ! intestinal mucosa morphology trait [Term] id: VT:0003450 name: pancreas size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the organ that secretes pancreatic juice into the duodenum and secretes glucagon and insulin into the bloodstream." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0009106] is_a: VT:0001944 ! pancreas morphology trait [Term] id: VT:0003452 name: parotid gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of either of the largest of the major salivary glands situated below and in front of each ear and opening into the parotid duct." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15347667] is_a: VT:0003792 ! major salivary gland morphology trait [Term] id: VT:0003456 name: tail size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the appendage at the caudal end of the vertebral column." [MP:0002111] is_a: VT:0002111 ! tail morphology trait [Term] id: VT:0003457 name: blood ketone body amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of acetoacetate, 3-hydroxybutyrate and acteone; produced by fatty acid and carbohydrate metabolism and seen in conditions such as starvation and diabetes mellitus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood ketone body level" RELATED [] synonym: "circulating ketone body level" RELATED [] is_a: VT:0003949 ! blood lipid amount [Term] id: VT:0003463 name: single cell response trait namespace: Trait.ontology def: "Any measurable characteristic related to the response from a specific stimulus obtained upon extra- or intracellular recordings from single cells." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0002272 ! nervous system electrophysiology trait [Term] id: VT:0003464 name: single cell response threshold namespace: Trait.ontology def: "The point at which a stimulus first elicits a recordable response recorded in a single cell." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003463 ! single cell response trait [Term] id: VT:0003467 name: single cell response intensity namespace: Trait.ontology def: "The degree of de- or hyperpolarization or number of action potentials in response to a specific stimulus recorded in a single cell." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003463 ! single cell response trait [Term] id: VT:0003470 name: summary potential trait namespace: Trait.ontology def: "Any measurable characteristic related to the electrophysiological recording of the activity of several cells." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0002272 ! nervous system electrophysiology trait [Term] id: VT:0003471 name: summary potential threshold namespace: Trait.ontology def: "The point at which a stimulus first elicits a recordable response recorded in several cells or a tissue slice." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003470 ! summary potential trait [Term] id: VT:0003474 name: summary potential intensity namespace: Trait.ontology def: "The degree of de- or hyperpolarization or number of action potentials in response to a specific stimulus recorded in several cells or a tissue slice." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003470 ! summary potential trait [Term] id: VT:0003477 name: nerve fiber response trait namespace: Trait.ontology def: "Any measurable characteristic related to the electrophysiological recordings from a single or several nerve fiber(s)." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0002272 ! nervous system electrophysiology trait [Term] id: VT:0003478 name: nerve fiber response threshold namespace: Trait.ontology def: "The point at which a stimulus first elicits a recordable response recorded in a single or several nerve fiber(s)." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003477 ! nerve fiber response trait [Term] id: VT:0003479 name: nerve fiber response intensity namespace: Trait.ontology def: "The degree of de- or hyperpolarization or number of action potentials in response to a specific stimulus recorded in a single or several nerve fiber(s)." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003477 ! nerve fiber response trait [Term] id: VT:0003484 name: channel response trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the electrophysiological recordings from ion channels." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0002272 ! nervous system electrophysiology trait is_a: VT:0003635 ! synaptic transmission trait [Term] id: VT:0003485 name: channel response threshold namespace: Trait.ontology def: "The point at which a stimulus first elicits a recordable response recorded from ion channels." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003484 ! channel response trait [Term] id: VT:0003486 name: channel response intensity namespace: Trait.ontology def: "The degree of de- or hyperpolarization or number of action potentials in response to a specific stimulus recorded from ion channels." [MGI:Nmice "Neuromice Consortium Submission"] is_a: VT:0003484 ! channel response trait [Term] id: VT:0003491 name: voluntary movement trait namespace: Trait.ontology def: "any measurable or observable characteristic related to coordinated movements executed with a purpose that can be improved by learning and/or experience" [MGI:MP, MGI:smb] subset: slim_pig is_a: VT:0015005 ! parametrial fat pad morphology trait [Term] id: VT:0003492 name: involuntary movement trait namespace: Trait.ontology def: "any measurable or observable characteristic related to movements that occur independent of planning (e.g. reflexive behavior)" [MGI:MP, MGI:smb] is_a: VT:0015005 ! parametrial fat pad morphology trait [Term] id: VT:0003498 name: thyroid gland cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the endocrine gland located in the front and to the sides of the upper part of the trachea and which secretes thyroid hormone and calcitonin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", NCBI:matt "Matthew Mailman"] synonym: "thyroid gland cell number" EXACT [] is_a: VT:0000681 ! thyroid gland morphology trait [Term] id: VT:0003501 name: iodide oxidation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to thyroid function in oxidation and organification of iodide." [NCBI:matt "Matthew Mailman"] is_a: VT:0002876 ! thyroid gland physiology trait [Term] id: VT:0003506 name: growth hormone secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of growth hormone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] is_a: VT:0001746 ! secretion by pituitary trait [Term] id: VT:0003507 name: ovary physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the female reproductive gland containing the germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000460 is_a: VT:0003699 ! female reproductive system physiology trait is_a: VT:0005647 ! sex gland physiology trait [Term] id: VT:0003508 name: blood dihydrotestosterone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this potent androgenic metabolite of testosterone." [NCBI:matt "Matthew Mailman"] synonym: "circulating dihydrotestosterone level" RELATED [] synonym: "circulating level of stanolone" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0003511 name: labium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the folds of skin which form the inner lips (labia minora) and outer lips (labia majora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000461 is_a: VT:0003126 ! vulva morphology trait [Term] id: VT:0003512 name: labia size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the folds of skin which form the inner lips (labia minora) and outer lips (labia majora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] is_a: VT:0003511 ! labium morphology trait [Term] id: VT:0003514 name: interlabial sulcus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of grooves or furrows in the folds of skin between the labia on both sides of the vaginal opening." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] is_a: VT:0003511 ! labium morphology trait [Term] id: VT:0003515 name: labia majora morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the folds of skin which form the outer lips (labia majora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000462 is_a: VT:0003511 ! labium morphology trait [Term] id: VT:0003517 name: labia majora size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the folds of skin which form the outer lips (labia majora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000463 is_a: VT:0003512 ! labia size trait is_a: VT:0003515 ! labia majora morphology trait [Term] id: VT:0003519 name: labia majora shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the folds of skin which form the outer lips (labia majora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000464 is_a: VT:0003515 ! labia majora morphology trait [Term] id: VT:0003520 name: labia minora morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000465 is_a: VT:0003511 ! labium morphology trait [Term] id: VT:0003522 name: labia minora size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000466 is_a: VT:0003512 ! labia size trait is_a: VT:0003520 ! labia minora morphology trait [Term] id: VT:0003524 name: labia minora shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000467 is_a: VT:0003520 ! labia minora morphology trait [Term] id: VT:0003528 name: vulva size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the external genitalia of the female." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] xref: ATOL:0000468 is_a: VT:0003126 ! vulva morphology trait [Term] id: VT:0003529 name: clitoris size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the small, erectile body located at the anterior end of the vulva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] xref: ATOL:0000469 is_a: VT:0003127 ! clitoris morphology trait [Term] id: VT:0003531 name: vagina development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the female reproductive canal located between the uterus and the vulva during its formation and differentiation." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000470 is_a: VT:0003936 ! reproductive system development trait [Term] id: VT:0003538 name: hymen development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the thin membrane which may partially occlude the opening of the vagina; often absent in normal females." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] is_a: VT:0003531 ! vagina development trait [Term] id: VT:0003553 name: foreskin morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the loose fold of skin that covers the penis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] synonym: "prepuce morphology trait" EXACT [] xref: ATOL:0000471 is_a: VT:0005187 ! penis morphology trait [Term] id: VT:0003562 name: pancreatic beta cell physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the insulin-producing cells of the islets of Langerhans in the pancreas." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002693 ! pancreas gland physiology trait [Term] id: VT:0003563 name: pancreatic alpha cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the glucagon-producing cells of the islets of Langerhans in the pancreas." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002693 ! pancreas gland physiology trait [Term] id: VT:0003564 name: insulin secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of this hormone secreted by beta cells of the pancreas, which promotes glucose utilization, protein synthesis, and the formation and storage of neutral lipids." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002694 ! secretion by pancreas trait is_a: VT:0003562 ! pancreatic beta cell physiology trait [Term] id: VT:0003565 name: glucagon secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of this hormone secreted by the alpha cells of the islets of Langerhans; it normally plays a role in regulation of blood glucose concentration, ketone metabolism, and other biochemical and physiological processes." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002694 ! secretion by pancreas trait is_a: VT:0003563 ! pancreatic alpha cell physiology trait [Term] id: VT:0003568 name: uterine lumen morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the opening or lumen of the uterus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] xref: ATOL:0000472 is_a: VT:0001120 ! uterus morphology trait [Term] id: VT:0003572 name: uterus development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the hollow muscular organ where the embryo/fetus develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000473 is_a: VT:0003936 ! reproductive system development trait [Term] id: VT:0003574 name: oviduct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tube through which the ova pass from the ovary to the uterus (mammals) or to the outside (fish, birds)." [ATOL:0000474, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "fallopian tube morphology trait" EXACT [] synonym: "uterine tube morphology trait" EXACT [] xref: ATOL:0000474 is_a: VT:0001119 ! female reproductive system morphology trait [Term] id: VT:0003576 name: oviduct size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the tube through which the ova pass from the ovary to the uterus (mammals) or to the outside (fish, birds)." [ATOL:0000475, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "fallopian tube size trait" EXACT [] synonym: "uterine tube size trait" EXACT [] xref: ATOL:0000475 is_a: VT:0003574 ! oviduct morphology trait [Term] id: VT:0003582 name: ovary development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the female reproductive gland containing the germ cells during its formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000476 is_a: VT:0003936 ! reproductive system development trait is_a: VT:0015037 ! gland development trait [Term] id: VT:0003585 name: ureter size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the tube that conducts the urine from the renal pelvis to the bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] is_a: VT:0000534 ! ureter morphology trait [Term] id: VT:0003588 name: ureter width namespace: Trait.ontology def: "The distance from side to side of the tube that conducts the urine from the renal pelvis to the bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003585 ! ureter size trait [Term] id: VT:0003589 name: ureter physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the tube that conducts the urine from the renal pelvis to the urinary bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005502 ! urinary system physiology trait [Term] id: VT:0003592 name: urethra width namespace: Trait.ontology def: "The distance from side to side of the canal that leads from the bladder and discharges urine externally." [RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003594 ! urethra size trait [Term] id: VT:0003594 name: urethra size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the canal that leads from the bladder and discharges urine externally." [NCBI:matt "Matthew Mailman"] is_a: VT:0000537 ! urethra morphology trait [Term] id: VT:0003599 name: penis size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the organ of copulation and urination in the male." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] xref: ATOL:0000477 is_a: VT:0005187 ! penis morphology trait [Term] id: VT:0003606 name: nephron physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the filtering unit of the kidney that includes the renal corpuscle, proximal and distal convoluted tubules, loop of Henle, and the collecting tubule." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:DHM "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0002136 ! kidney physiology trait [Term] id: VT:0003607 name: prostate physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the gland surrounding the beginning of the urethra in males that secretes part of the seminal fluid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "prostate gland physiology trait" EXACT [] xref: ATOL:0001801 is_a: VT:0003698 ! male reproductive system physiology trait is_a: VT:0005647 ! sex gland physiology trait [Term] id: VT:0003610 name: scrotum cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the external sac of skin that encloses the testes." [NCBI:matt "Matthew Mailman"] synonym: "scrotum cell number" EXACT [] xref: ATOL:0000479 is_a: VT:0002669 ! scrotum morphology trait [Term] id: VT:0003613 name: kidney medulla development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the inner portion of the kidney during its formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000527 ! kidney development trait [Term] id: VT:0003617 name: urinary bladder cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the inflatable musculomembranous bag for holding urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] synonym: "urinary bladder cell number" EXACT [] is_a: VT:0000538 ! urinary bladder morphology trait [Term] id: VT:0003618 name: cervical opening size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cervical opening." [NCBI:matt "Matthew Mailman"] xref: ATOL:0000480 is_a: VT:0001135 ! cervix morphology trait [Term] id: VT:0003619 name: urine color namespace: Trait.ontology def: "The visually perceived hue of the fluid and dissolved substances excreted by the kidneys." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman"] is_a: VT:0000056 ! urine trait [Term] id: VT:0003620 name: urine output namespace: Trait.ontology def: "The amount of urine excreted." [NCBI:matt "Matthew Mailman"] is_a: VT:0001784 ! fluid regulation trait [Term] id: VT:0003626 name: kidney medulla cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the inner portion of the kidney consisting of the renal pyramids." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", NCBI:matt "Matthew Mailman", RGD:MS] synonym: "kidney medulla cell number" EXACT [] synonym: "renal medulla cell number" EXACT [] is_a: VT:0003014 ! kidney medulla morphology trait [Term] id: VT:0003627 name: leukocyte tethering or rolling trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the transient adhesive interactions between leukocytes and endothelial cells lining blood vessels mediated primarily by selectins and which are typically the first step in cellular extravasation." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: GO:0050901 "leukocyte tethering or rolling" is_a: VT:0009858 ! cellular extravasation trait [Term] id: VT:0003628 name: leukocyte adhesion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which leukocytes adhere to the luminal aspects of high endothelial venules prior to transmigration out of the vessel." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "lymphocyte adhesion" NARROW [] synonym: "lymphocyte firm adhesion" EXACT [] is_a: VT:0003156 ! leukocyte migration trait [Term] id: VT:0003630 name: urothelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial lining in organs of the urinary tract." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000516 ! urinary system morphology trait [Term] id: VT:0003632 name: nervous system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the components of the system responsible for receiving and processing information about an organism's environment and controlling behavior." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "central nervous system morphology trait" NARROW [] synonym: "peripheral nervous system morphology trait" NARROW [] is_a: VT:1000781 ! nervous/sensory system trait [Term] id: VT:0003633 name: nervous system physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the components of the system responsible for receiving and processing information about an organism's environment and controlling behavior." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "central nervous system physiology trait" NARROW [] synonym: "peripheral nervous system physiology trait" NARROW [] is_a: VT:1000781 ! nervous/sensory system trait [Term] id: VT:0003634 name: glial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the non-neuronal cells of the nervous system that form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "glia morphology trait" EXACT [] synonym: "neuroglia mrophology" EXACT [] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0003635 name: synaptic transmission trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the communication from a neuron to a target across a synapse." [MP:0003635] synonym: "neurotransmission" EXACT [] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0003637 name: cochlear ganglion cell quantity namespace: Trait.ontology def: "The proportion or number of the group of nerve cell bodies that convey auditory sensation from the organ of Corti to the hindbrain and reside on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "spiral ganglion cell number" EXACT [] is_a: VT:0002855 ! cochlear ganglion morphology trait [Term] id: VT:0003641 name: lung size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of either or both of the spongy organs of respiration contained within the pleural cavity of the thorax." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001175 ! lung morphology trait [Term] id: VT:0003646 name: muscle fatigue trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of muscle exhaustion following contraction." [PMID:15760270, RGD:cur "Rat Genome Database submission"] synonym: "muscle fatigability" EXACT [] is_a: VT:0002106 ! muscular system physiology trait [Term] id: VT:0003647 name: oligodendrocyte quantity namespace: Trait.ontology def: "The proportion or number of the neuroglia of the central nervous system that form the insulating myelin sheath of axons." [MP:0000953] synonym: "oligodendrocyte number" EXACT [] is_a: VT:0000953 ! oligodendrocyte morphology trait [Term] id: VT:0003648 name: radial glial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the supporting cells of the developing central nervous system that guide neuronal migration during development and exchange metabolites with developing and migrating neurons; these cells differentiate into astrocytes and some neuronal types in the adult." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000952 ! central nervous system glial cell morphology trait is_a: VT:0006008 ! neurogenesis trait [Term] id: VT:0003650 name: kidney shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0003651 name: axon outgrowth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of an axon to extend from a neuron cell body." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator", PMID:15647357] is_a: VT:0006008 ! neurogenesis trait [Term] id: VT:0003652 name: skin elasticity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the membranous protective covering of the body to recover size and shape after deformation in any way." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005501 ! skin physiology trait [Term] id: VT:0003656 name: erythrocyte physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the cells in the blood that carry oxygen, red blood cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "red blood cell physiology trait" EXACT [] is_a: VT:0010249 ! blood cell physiology trait [Term] id: VT:0003661 name: locus ceruleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the dense cluster of neurons within the dorsorostral pons; it is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0000848 ! pons morphology trait [Term] id: VT:0003662 name: epiphyseal plate proliferative zone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15630088] synonym: "epiphysial plate proliferative zone morphology trait" RELATED [] synonym: "zone of proliferating cartilage morphology trait" EXACT [] is_a: VT:0003055 ! epiphyseal plate morphology trait [Term] id: VT:0003663 name: behavioral response to thermal stimulus trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the reaction of an organism to a detectable change or difference in temperature" [MGI:smb] synonym: "thermal preference" NARROW [] is_a: VT:0002067 ! sensation behavior trait [Term] id: VT:0003666 name: sperm capacitation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the change undergone by spermatozoa in the female genital tract that enables them to penetrate and fertilize an egg." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator", PMID:15737931] xref: ATOL:0001018 is_a: VT:0003698 ! male reproductive system physiology trait [Term] id: VT:0003668 name: periodontal ligament morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone; normally extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:11140699] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0003670 name: glomerular capsule size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the expanded beginning of a nephron that encloses the glomerulus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Bowman's capsule size trait" EXACT [] is_a: VT:0002828 ! glomerular capsule morphology trait [Term] id: VT:0003671 name: eyelid aperture namespace: Trait.ontology def: "The distance from the upper eyelid to the lower eyelid." [MP:0003671] synonym: "eyelid opening" EXACT [] is_a: VT:0001340 ! eyelid morphology trait [Term] id: VT:0003672 name: ureter development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the tube that conducts the urine from the renal pelvis to the bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003942 ! urinary system development trait [Term] id: VT:0003673 name: inguinal canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the passage in the lower abdominal wall through which the spermatic cord in the male or the round ligament in the female, nerves and vessels pass from the pelvic cavity to the scrotum or labia majora, respectively." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000483 is_a: VT:0002160 ! reproductive system morphology trait [Term] id: VT:0003677 name: ear lobe morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the soft tissue at the base of the outer ear; consists of fat and fibrous tissue not reinforced by the auricular cartilage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003677] is_a: VT:0002177 ! outer ear morphology trait [Term] id: VT:0003679 name: ear lobe size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the soft tissue at the base of the outer ear; consists of fat and fibrous tissue not reinforced by the auricular cartilage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003677, NCBI:matt "Matthew Mailman"] is_a: VT:0003677 ! ear lobe morphology trait [Term] id: VT:0003684 name: inferior olivary complex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids; neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex and have been implicated in various functions, such as learning and timing of movements." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "inferior olivary nucleus morphology trait" EXACT [] synonym: "inferior olive morphology trait" EXACT [] synonym: "oliva morphology trait" EXACT [] is_a: VT:0000846 ! medulla oblongata morphology trait [Term] id: VT:0003685 name: cardiac ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Wrisberg ganglia morphology trait" EXACT [] is_a: VT:0001034 ! parasympathetic ganglion morphology trait [Term] id: VT:0003686 name: eye muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the muscles of the organ of vision." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002092 ! eye morphology trait is_a: VT:0002108 ! muscular system morphology trait [Term] id: VT:0003687 name: intraocular muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the unstriated, involuntary muscles within the eyeball." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003687] is_a: VT:0000767 ! smooth muscle morphology trait is_a: VT:0003686 ! eye muscle morphology trait [Term] id: VT:0003690 name: glia physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the non-neuronal cells of the nervous system, which are interposed between neurons and the blood vessels supplying the nervous system." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "glial cell function" EXACT [] synonym: "glial cell physiology trait" EXACT [] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0003691 name: microglial cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the small, migratory, phagocytic, interstitial cells derived from myeloid progenitor cells and found in the parenchyma of the central nervous system; microglia are scavengers, engulfing dead cells and other debris, and in Alzheimer's disease, microglia are found associated with dying nerve cells and amyloid plaques." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator", PMID:16322748] is_a: VT:0002451 ! macrophage physiology trait is_a: VT:0003690 ! glia physiology trait [Term] id: VT:0003693 name: embryo hatching trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the mammalian embryo to break out of the zona pellucida, the thick, solid, transparent outer membrane that surrounds the developing ovum and embryo prior to implantation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0003696 name: zona pellucida morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the thick solid transparent outer membrane that surrounds the developing ovum and embryo prior to implantation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: ATOL:0000485 is_a: VT:0001131 ! ovarian follicle morphology trait [Term] id: VT:0003698 name: male reproductive system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the functions of or processes in the male organs associated with producing offspring." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001919 ! reproductive system physiology trait [Term] id: VT:0003699 name: female reproductive system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the female organs associated with producing offspring." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001919 ! reproductive system physiology trait [Term] id: VT:0003701 name: sister chromatid exchange trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to crossovers between sister chromatids during meiosis." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15831450] is_a: VT:0001930 ! meiosis trait [Term] id: VT:0003703 name: vestibulocochlear ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "spiral ganglion morphology trait" NARROW [] synonym: "vestibular cochlear ganglion morphology trait" EXACT [] is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0003704 name: hair follicle development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the tubular invaginations of the epidermis from which the hair shaft develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0010008 ! skin adnexa development trait [Term] id: VT:0003705 name: hypodermis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the irregular layer of adipose and connective tissue, stroma, or membrane immediately deep to the skin and superficial to the deep fascia; usually consists primarily of either just loose connective tissue, or a fatty layer that may also include a muscle layer, and/or a fibrous layer; may also occur as a membranous layer only, being nearly devoid of fat." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] synonym: "subcutaneous tissue morphology trait" EXACT [] synonym: "subcutis morphology trait" EXACT [] is_a: VT:0010007 ! skin adnexa morphology trait [Term] id: VT:0003713 name: ear rotation trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the orientation of the outer ears in relation to the anterior-posterior body axis, does not refer to the point of emergence on the head.\nconsider: VT:0010274" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:MP "Definition from the Mammalian Phenotype ontology", NCBI:matt "Matthew Mailman"] is_obsolete: true [Term] id: VT:0003720 name: neural tube closure trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the invagination and fusion of the neuroepithelial layer in early development." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator", PMID:15899865] is_a: VT:0002151 ! neural tube morphology/development trait [Term] id: VT:0003722 name: ureter quantity namespace: Trait.ontology def: "The proportion or number of tubes that conduct the urine from the renal pelvis to the bladder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:MS] synonym: "ureter number" EXACT [] is_a: VT:0000534 ! ureter morphology trait [Term] id: VT:0003723 name: long bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the elongated bones of the extremities, consisting of a tubular shaft (diaphysis) and two extremities (epiphyses)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0002109 ! limb morphology trait is_a: VT:0002115 ! skeleton extremities morphology trait [Term] id: VT:0003725 name: blood autoantibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies to self-antigens." [MGI:acv "Alicia Valenzuela, Genetic Resources Curator", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "autoantibody concentration" RELATED [] is_a: VT:0005005 ! self tolerance trait is_a: VT:0005416 ! blood protein amount [Term] id: VT:0003727 name: retinal layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the layers that make up the thin layer of neural tissue lining the back of the eyeball which contains visual receptors." [MP:0001325, MP:0003727] is_a: VT:0001325 ! retina morphology trait [Term] id: VT:0003728 name: retinal photoreceptor layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the layer of light-sensitive receptors in the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0003728] is_a: VT:0006069 ! retinal neuronal layer morphology trait [Term] id: VT:0003729 name: photoreceptor outer segment morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the photoreceptor layer which contains stacks of membranous discs that are rich in the visual pigment rhodopsin." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0001004 ! retinal photoreceptor morphology trait [Term] id: VT:0003730 name: photoreceptor inner segment morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the photoreceptor layer which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc)." [MP:0003730] is_a: VT:0001004 ! retinal photoreceptor morphology trait [Term] id: VT:0003731 name: retinal outer nuclear layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the retinal layer that contains the nuclei and cell bodies of rods and cones." [MP:0003731] is_a: VT:0006069 ! retinal neuronal layer morphology trait [Term] id: VT:0003732 name: retinal outer plexiform layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the retinal layer that is the site of synapses between the rods and cones (axons) and the horizontal and bipolar cells (dendrites)." [MP:0003732] is_a: VT:0006069 ! retinal neuronal layer morphology trait [Term] id: VT:0003733 name: retinal inner nuclear layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the retinal layer which contains the cell bodies of bipolar, horizontal, and amacrine cells." [MP:0003733] is_a: VT:0006069 ! retinal neuronal layer morphology trait [Term] id: VT:0003734 name: retinal inner plexiform layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the retinal cell layer where bipolar and amacrine cell axons synapse with ganglion cell dendrites." [MP:0003734] is_a: VT:0006069 ! retinal neuronal layer morphology trait [Term] id: VT:0003737 name: outer ear cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the nonvascular, resilient, flexible connective tissue of the external portion of the organ of hearing." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000163 ! cartilage morphology trait is_a: VT:0002177 ! outer ear morphology trait [Term] id: VT:0003739 name: auditory ossicle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of any of the small bones of the middle ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005105] synonym: "middle ear ossicle size trait" EXACT [] is_a: VT:0005105 ! auditory ossicle morphology trait [Term] id: VT:0003743 name: facial morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the region of the body that includes the front part of the head from the chin to the top of the forehead, where the mouth, eyes, nose, and other features are located." [NCBI:matt "Matthew Mailman"] is_a: VT:0000428 ! craniofacial morphology trait [Term] id: VT:0003744 name: orofacial morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the oral cavities of the face." [NCBI:matt "Matthew Mailman"] is_a: VT:0003743 ! facial morphology trait [Term] id: VT:0003745 name: mouth mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mucus-secreting tissue that lines the oral cavity." [NCBI:matt "Matthew Mailman"] synonym: "mucosal lining of the mouth" EXACT [] synonym: "oral mucosa morphology trait" EXACT [] is_a: VT:0000452 ! mouth morphology trait [Term] id: VT:0003749 name: mouth shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the mouth." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000452 ! mouth morphology trait [Term] id: VT:0003755 name: palate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the roof of the mouth in vertebrates formed anteriorly by a bony projection of the upper jaw (hard palate) and posteriorly by the fold of connective tissue (soft palate)." [NCBI:matt "Matthew Mailman"] is_a: VT:0000452 ! mouth morphology trait [Term] id: VT:0003756 name: hard palate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior part of the palate that is supported by and includes the palatal extensions of the maxillary and palatine bones." [NCBI:matt "Matthew Mailman"] is_a: VT:0003755 ! palate morphology trait [Term] id: VT:0003759 name: palate width namespace: Trait.ontology def: "The distance from side to side of the roof of the oral cavity." [NCBI:matt "Matthew Mailman"] is_a: VT:0003755 ! palate morphology trait [Term] id: VT:0003760 name: palate length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the roof of the oral cavity." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", NCBI:matt "Matthew Mailman"] is_a: VT:0003755 ! palate morphology trait [Term] id: VT:0003762 name: immune system organ physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organs associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "lymph organ physiology trait" RELATED [] is_a: VT:0001790 ! immune system physiology trait [Term] id: VT:0003763 name: thymus physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the primary lymphoid organ that is required for maturation of T cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003762 ! immune system organ physiology trait is_a: VT:0010254 ! hematopoietic system physiology trait [Term] id: VT:0003764 name: palate depth namespace: Trait.ontology def: "The average distance of the deepest point in the midline of the palate relative to the midline point on the anterior crest of the alveolar gum pad ridge." [NCBI:matt "Matthew Mailman"] is_a: VT:0003755 ! palate morphology trait [Term] id: VT:0003769 name: lip morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fleshy margins of the mouth." [MP:0003769] is_a: VT:0003744 ! orofacial morphology trait is_a: VT:0015066 ! surface structure morphology trait [Term] id: VT:0003771 name: lip shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the fleshy margins of the mouth." [NCBI:matt "Matthew Mailman", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003769 ! lip morphology trait [Term] id: VT:0003784 name: lip vermillion border width namespace: Trait.ontology def: "The distance from side to side of the line between the lip and the facial skin around the mouth." [NCBI:matt "Matthew Mailman"] synonym: "lip vermillion border thickness" EXACT [] is_a: VT:0003769 ! lip morphology trait [Term] id: VT:0003791 name: minor salivary gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000613 ! salivary gland morphology trait [Term] id: VT:0003792 name: major salivary gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000613 ! salivary gland morphology trait [Term] id: VT:0003793 name: submandibular gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of either of the large major salivary glands situated beneath the mandible." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003792 ! major salivary gland morphology trait [Term] id: VT:0003794 name: somite formation initation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the start of the induction and/or formation of any of the paired, metamerically arranged cell masses formed in the embryonic paraxial mesoderm." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15939867] synonym: "onset of somite formation" EXACT [] is_a: VT:0001688 ! somite development trait [Term] id: VT:0003795 name: bone structure trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the composite material or the layered arrangement of bony tissue, common to multiple bones of the skeleton.\nconsider: VT:0010003" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true [Term] id: VT:0003796 name: cortical bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the superficial thin layer of compact bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003797 ! compact bone morphology trait [Term] id: VT:0003797 name: compact bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outer layers of solid, hard bone that cover spongy bone; consist of parallel osteons containing mineral deposits and interstitial lamellae." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] synonym: "dense bone morphology trait" EXACT [] synonym: "lamellar bone morphology trait" EXACT [] is_a: VT:0010003 ! bone morphology trait [Term] id: VT:0003798 name: Harderian gland pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the sebaceous gland located behind the eyeball in some species that excretes fluid that facilitates movement of the nictitating membrane." [MP:0003798] is_a: VT:0005248 ! Harderian gland morphology trait [Term] id: VT:0003799 name: macrophage migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement of macrophages from point to point." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "macrophage chemotaxis" EXACT [] is_a: VT:0002451 ! macrophage physiology trait is_a: VT:0003156 ! leukocyte migration trait [Term] id: VT:0003800 name: digit quantity namespace: Trait.ontology def: "The proportion or number of fingers or toes, or their corresponding parts in other vertebrates." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "digit number" EXACT [] is_a: VT:0002110 ! digit morphology trait [Term] id: VT:0003806 name: nucleotide metabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0009117 "nucleotide metabolic pathway" is_a: VT:0002121 ! metabolism trait [Term] id: VT:0003809 name: hair shaft morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the free portion of the hair, consisting of the cuticle, cortex, and the medulla." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0000367 ! coat/hair morphology trait [Term] id: VT:0003810 name: hair cuticle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outermost layer of the hair shaft." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0003809 ! hair shaft morphology trait [Term] id: VT:0003811 name: hair cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the principal structural component of the hair shaft." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003809 ! hair shaft morphology trait [Term] id: VT:0003812 name: hair medulla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the central axis of the hair shaft." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0003809 ! hair shaft morphology trait [Term] id: VT:0003815 name: hair quantity namespace: Trait.ontology def: "The proportion or number of fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "amount of hair" RELATED [] synonym: "hair number" EXACT [] is_a: VT:0000367 ! coat/hair morphology trait [Term] id: VT:0003816 name: pituitary gland development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the compound gland suspended from the base of the hypothalamus, which secretes somatotropins, prolactin, TSH (thyroid-stimulating hormone), gonadotropins, and adrenal corticotropin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015037 ! gland development trait [Term] id: VT:0003817 name: Rathke's pouch morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the pouch of ectoderm that grows out from the upper surface of the embryonic stomodeum and gives rise to the anterior and intermediate lobes of the pituitary gland." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:10498698] synonym: "Rathke's pocket morphology trait" EXACT [] is_a: VT:0003816 ! pituitary gland development trait [Term] id: VT:0003818 name: eye muscle development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the muscles of the organ of vision during their formation and differentiation." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000733 ! muscular system development trait is_a: VT:0001286 ! eye development trait [Term] id: VT:0003825 name: pillar cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the supporting cells that form the inner and outer walls of the tunnel in the organ of Corti." [MP:0003825] is_a: VT:0004300 ! organ of Corti supporting cell morphology trait [Term] id: VT:0003826 name: Mullerian duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the transient embryonic tubes that empty into the cloaca and in the female develop into the oviducts, uterus, and vagina." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "Muller duct morphology trait" EXACT [] synonym: "paramesonephric duct morphology trait" EXACT [] xref: ATOL:0000487 is_a: VT:0003936 ! reproductive system development trait [Term] id: VT:0003827 name: Wolffian duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the transient embryonic tubes that empty into the cloaca and differentiate into the vas deferens in the male in higher vertebrates." [MeSH:D014928 "Wolffian ducts"] synonym: "mesonephric duct morphology trait" EXACT [] xref: ATOL:0000488 is_a: VT:0003936 ! reproductive system development trait [Term] id: VT:0003830 name: testes development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the male reproductive glands during their formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:16024774, VTO:CP "Cari Park, Iowa State University Curator"] xref: ATOL:0000489 is_a: VT:0003936 ! reproductive system development trait is_a: VT:0015037 ! gland development trait [Term] id: VT:0003833 name: satellite cell quantity namespace: Trait.ontology def: "The proportion or number of unfused, spindle-shaped cells in skeletal muscle that play a role in muscle repair and regeneration." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: ATOL:0000490 is_a: VT:0010119 ! skeletal muscle cellular composition trait [Term] id: VT:0003834 name: adrenergic chromaffin cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells responsible for epinephrine and norepinephrine secretion." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000639 ! adrenal gland morphology trait [Term] id: VT:0003838 name: milk secretion trait namespace: Trait.ontology def: "Any measurable characteristic related to the controlled release of milk from the mammary gland." [PMID:8933362, RGD:MS] xref: ATOL:0000491 is_a: VT:0001882 ! lactation trait [Term] id: VT:0003840 name: coronal suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the articulation between the parietal bones and the frontal bone." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MP:0003840] synonym: "frontoparietal suture morphology trait" EXACT [] is_a: VT:0002835 ! cranial suture morphology trait [Term] id: VT:0003841 name: lambdoid suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the articulation between the parietal bones and the occipital bone." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MP:0003841] synonym: "lambdoidal suture morphology trait" EXACT [] synonym: "occipital suture morphology trait" EXACT [] synonym: "occipitoparietal suture morphology trait" EXACT [] is_a: VT:0002835 ! cranial suture morphology trait [Term] id: VT:0003842 name: metopic suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the articulation of the frontal bone from the sagittal suture to the root of the nose." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MP:0003842] synonym: "frontal suture morphology trait" EXACT [] synonym: "mediofrontal suture morphology trait" EXACT [] is_a: VT:0002835 ! cranial suture morphology trait [Term] id: VT:0003843 name: sagittal suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the articulation between the parietal bones." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MP:0003843] synonym: "interparietal suture morphology trait" EXACT [] synonym: "longitudinal suture morphology trait" EXACT [] synonym: "parietal suture morphology trait" EXACT [] is_a: VT:0002835 ! cranial suture morphology trait [Term] id: VT:0003844 name: squamosal suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the articulation of the squamous portion of the temporal bones with the parietal bones." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MP:0003844] synonym: "squamal-parietal suture morphology trait" EXACT [] synonym: "squamo-parietal suture morphology trait" EXACT [] is_a: VT:0002835 ! cranial suture morphology trait [Term] id: VT:0003847 name: lens bow organization trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement of the area where the lens epithelium pushes into the lens proper and forms new lens fibers." [MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator", MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true [Term] id: VT:0003850 name: thymocyte activation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of producing activated thymocytes from naive thymocytes." [MGI:mberry "Melissa Berry, Genetics Resources Curator"] is_a: VT:0001828 ! T cell activation trait is_a: VT:0003763 ! thymus physiology trait [Term] id: VT:0003853 name: skin water amount namespace: Trait.ontology def: "The proportion, quantity, or volume of moisture in the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "skin moisture content" EXACT [] synonym: "skin water content" EXACT [] is_a: VT:0002096 ! skin morphology trait [Term] id: VT:0003854 name: forelimb stylopod morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the proximal element of the developing forelimb that will give rise to the humerus." [PMID:12560810] is_a: VT:0006279 ! limb development trait [Term] id: VT:0003855 name: forelimb zeugopod morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the distal elements of the developing forelimb that will give rise to the radius and ulna." [PMID:12560810] is_a: VT:0006279 ! limb development trait [Term] id: VT:0003856 name: hindlimb stylopod morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the proximal element of the developing hindlimb that will give rise to the femur." [PMID:12560810] is_a: VT:0006279 ! limb development trait [Term] id: VT:0003857 name: hindlimb zeugopod morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the distal elements of the developing hindlimb that will give rise to the tibia and fibula." [PMID:12560810] is_a: VT:0006279 ! limb development trait [Term] id: VT:0003859 name: Harderian gland physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the sebaceous gland located behind the eyeball in the orbit that secretes lipids, porphyrins, and indoles such as melatonin." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator", PMID:9413988] is_a: VT:0002991 ! sebaceous gland physiology trait [Term] id: VT:0003861 name: nervous system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the components of the nervous system during their formation and differentiation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000781 ! nervous/sensory system trait [Term] id: VT:0003864 name: midbrain development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the part of the brainstem developing from the middle of the three primary cerebral vesicles of the embryo." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: GO:0030901 "midbrain development" is_a: VT:0000913 ! brain development trait [Term] id: VT:0003871 name: myelin sheath morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the insulating envelope that surrounds nerve fibers or axons." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0005404 ! axon morphology trait [Term] id: VT:0003876 name: cerebrum physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the largest part of the brain, derived from the telencephalon, which is composed of right and left hemispheres, each of which contains an outer cerebral cortex and a subcortical basal ganglia; cerebral functions include sensorimotor, emotional, and intellectual activities." [MP:0008540] synonym: "cerebral physiology trait" EXACT [] is_a: VT:0015058 ! brain physiology trait [Term] id: VT:0003877 name: serotonergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that secrete serotonin." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0003878 name: ear physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of and processes in the organ of hearing and equilibrium." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015057 ! head physiology trait [Term] id: VT:0003879 name: hair cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the sensory epithelial cells of the inner ear." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:16102537] is_a: VT:0003878 ! ear physiology trait is_a: VT:0005423 ! somatic nervous system physiology trait [Term] id: VT:0003880 name: central pattern generator physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the functions of or processes in the neural networks that produce rhythmic patterned output without sensory input and underlie rhythmic motor patterns." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0003881 name: nephron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the filtering unit of the kidney that includes the renal corpuscle, proximal and distal convoluted tubules, loop of Henle, and the collecting tubule." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0003883 name: stomach size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the sac-like structure of the digestive canal between the esophagus and the small intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abomasum size trait" RELATED [] is_a: VT:0000470 ! stomach morphology trait [Term] id: VT:0003885 name: rostral-caudal body axis extension trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the elongation of the long (rostral-caudal) axis of the body once patterning has been established." [MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] synonym: "rostro-caudal body axis extension" EXACT [] is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0003886 name: embryonic epiblast morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper." [MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0003887 name: hepatocyte apoptosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which liver cells undergo programmed cell death." [MP:0003887] is_a: VT:0000609 ! liver physiology trait [Term] id: VT:0003890 name: embryonic-extraembryonic boundary morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the connection between the embryo proper and extraembryonic tissues." [MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0003892 name: gastric gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the branched tubular glands in the mucosa of the fundus and body of the stomach that contain parietal cells that secrete hydrochloric acid and zymogenic cells that produce pepsin." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0005209 ! gastric mucosa morphology trait [Term] id: VT:0003893 name: hepatocyte proliferation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which liver cells undergo expansion by cell division." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000609 ! liver physiology trait [Term] id: VT:0003894 name: Purkinje cell innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers that connect to the Purkinje cells.\nconsider: VT:0010151, VT:0010154" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_obsolete: true [Term] id: VT:0003905 name: aorta elastin amount namespace: Trait.ontology def: "The proportion, quantity, or volume of elastin in the aorta." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "aortic elastin content" RELATED [] is_a: VT:0007048 ! aorta elastic tissue molecular composition trait [Term] id: VT:0003920 name: right ventricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the right lower chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "right ventricular morphology trait" RELATED [] xref: MP:0003920 is_a: VT:0005294 ! heart ventricle morphology trait [Term] id: VT:0003921 name: left ventricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the left lower chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "left ventricular morphology trait" RELATED [] xref: MP:0003921 is_a: VT:0005294 ! heart ventricle morphology trait [Term] id: VT:0003930 name: tooth hard tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the hard portion of the tooth surrounding the pulp, including the dentin, enamel and the cementum on the root." [MP:0003930] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0003932 name: molar crown morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the upper part of the molar, which is normally covered with enamel." [MP:0003932] is_a: VT:0002689 ! molar morphology trait [Term] id: VT:0003933 name: cementum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bonelike rigid connective tissue covering the root of a tooth." [MP:0003933] is_a: VT:0003930 ! tooth hard tissue morphology trait [Term] id: VT:0003934 name: pancreas development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the organ that secretes pancreatic juice into the duodenum and secretes glucagon and insulin into the bloodstream." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015037 ! gland development trait is_a: VT:1000776 ! alimentary system trait [Term] id: VT:0003935 name: craniofacial development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the region of the body that includes the front part of the head from the chin to the top of the forehead, where the mouth, eyes, nose, and other features are and the part of the skull enclosing the brain." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015047 ! head development trait [Term] id: VT:0003936 name: reproductive system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the organs involved in the production of offspring during their formation and differentiation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0005389 ! reproductive system trait [Term] id: VT:0003938 name: ear development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the organ of hearing, responsible for maintaining equilibrium as well as sensing sound, during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015047 ! head development trait [Term] id: VT:0003939 name: myotome morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mesoderm that is derived from the somite and is fated to become the skeletal musculature." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000729 ! skeletal myogenesis trait [Term] id: VT:0003940 name: dermatome morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lateral portion of the embryonic somite that is fated to become the dermis." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "cutis plate morphology trait" EXACT [] is_a: VT:0003941 ! skin development trait [Term] id: VT:0003941 name: skin development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the membranous protective covering of the body during its formation or differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0100018 ! integumentary system development trait [Term] id: VT:0003942 name: urinary system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the organs involved in the production or excretion of urine." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000777 ! urinary system trait [Term] id: VT:0003943 name: hepatobiliary system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the liver, gall bladder, or bile ducts during their formation and differentiation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:1000776 ! alimentary system trait [Term] id: VT:0003945 name: lymphocyte physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the white blood cells that include B cells, T cells, and NK cells." [MP:0003945] xref: ATOL:0000495 is_a: VT:0002442 ! leukocyte physiology trait [Term] id: VT:0003947 name: cholesterol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cholesterol level" EXACT [] is_a: VT:0001547 ! lipid amount is_a: VT:0005278 ! cholesterol homeostasis trait [Term] id: VT:0003949 name: blood lipid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "circulating lipid level" RELATED [] is_a: VT:0001547 ! lipid amount is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0003951 name: copper homeostasis trait namespace: Trait.ontology def: "Any measurable characteristic related to the state of equilibrium in the body with respect to this metallic element that normally occurs in a number of proteins including amine oxidases and chaperone proteins." [MP:0003951] is_a: VT:0005636 ! mineral homeostasis trait [Term] id: VT:0003952 name: copper amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of this metallic element that normally occurs in a number of proteins including amine oxidases and chaperone proteins." [MP:0003952] is_a: VT:0000192 ! mineral amount is_a: VT:0003951 ! copper homeostasis trait [Term] id: VT:0003954 name: Reichert's membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the extraembryonic basement membrane in rodents that forms on the inner surface of the trophectoderm and is secreted by the distal endoderm; required for the maternofetal exchange of nutrients and is important for the post-gastrulation development." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0003955 name: ultimobranchial body morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the sac-like structure emanating from the caudal-most branchial pouch of the embryo; develops into the lateral portion of the thyroid that produces calcitonin in higher vertebrates." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] is_a: VT:0003421 ! thyroid gland development trait is_a: VT:0006031 ! branchial pouch morphology trait [Term] id: VT:0003974 name: endocardium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thin serous membrane, primarily composed of endothelial tissue, that lines the interior of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0003977 name: blood carnitine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of carnitine, a quaternary ammonium amino acid derivative involved in transport of fatty acids across the mitochondrial membrane." [MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] synonym: "blood carnitine level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0003984 name: embryonic growth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the increase in size or mass during the embryonic period (sensu Mus: up to E14, or the completion of organogenesis)." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] is_a: VT:0005380 ! embryonic development trait is_a: VT:0100007 ! growth trait [Term] id: VT:0003986 name: cochlear ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cochlear ganglion or of the sensory neuron cell bodies that convey auditory sensation from the organ of Corti to the hindbrain and reside on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0002855 ! cochlear ganglion morphology trait [Term] id: VT:0003987 name: vestibular ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the vestibular ganglion or of the sensory neuron cell bodies associated with the eighth cranial nerve." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0002856 ! vestibular ganglion morphology trait [Term] id: VT:0003989 name: barrel cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the discrete functional unit of the somatosensory cortex that processes tactile information derived from the vibrissae." [MP:0003989] is_a: VT:0000860 ! primary somatosensory cortex morphology trait [Term] id: VT:0003993 name: ventral spinal root morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior bundle of nerves emerging from the spinal cord to join with the posterior/dorsal nerve bundle at each spinal cord segment to form one of the 31 paired peripheral nerves." [MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] is_a: VT:0001077 ! spinal nerve morphology trait [Term] id: VT:0003994 name: dorsal spinal root morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior bundle of nerves emerging from the spinal cord to join with the anterior/ventral nerve bundle at each spinal cord segment to form one of the 31 paired peripheral nerves." [MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] is_a: VT:0001077 ! spinal nerve morphology trait [Term] id: VT:0004002 name: jejunum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the portion of the small intestine that extends from the duodenum to the ileum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] xref: ATOL:0000498 is_a: VT:0000496 ! small intestine morphology trait [Term] id: VT:0004005 name: intestinal smooth muscle contractility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the unstriated, involuntary muscle tissue of the intestines to shorten or to develop increased tension." [MP:0004005] is_a: VT:0000740 ! smooth muscle contractility trait [Term] id: VT:0004006 name: jejunal smooth muscle contractility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the unstriated, involuntary muscle tissue of the portion of the small intestine that extends from the duodenum to the ileum to shorten or to develop increased tension." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0004005 ! intestinal smooth muscle contractility trait [Term] id: VT:0004007 name: lung blood vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the blood vessels of either or both of the spongy organs of respiration contained within the pleural cavity of the thorax." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "lung vascular morphology trait" RELATED [] synonym: "pulmonary vasculature" RELATED [] xref: MP:0004007 is_a: VT:0001175 ! lung morphology trait is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0004008 name: GABA receptor current namespace: Trait.ontology def: "The measured amplitude or duration of response to stimulation of GABA receptors." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "gamma-amino-n-butyric acid receptor currents" EXACT [] is_a: VT:0002206 ! CNS synaptic transmission trait [Term] id: VT:0004020 name: amniotic fluid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the liquid that envelops the fetus inside the amniotic sac." [MeSH:D000653 "amniotic fluid"] is_a: VT:0001784 ! fluid regulation trait [Term] id: VT:0004021 name: rod electrophysiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the rhodopsin-containing photoreceptor cells of the retina." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "scotopic response" RELATED [] is_a: VT:0005551 ! eye electrophysiology trait [Term] id: VT:0004022 name: cone electrophysiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the cells in the outer layer of the retina that are stimulated by wavelengths of light of different colors; essential for color discrimination." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "photopic response" EXACT [] is_a: VT:0005551 ! eye electrophysiology trait [Term] id: VT:0004032 name: interventricular groove morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the indentation dividing the two ventricles, comprised of the sulcus interventricularis anterior and the sulcus interventricularis posterior." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "interventricular sulcus morphology trait" EXACT [] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0004035 name: sublingual gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the small mucin-producing salivary glands in the floor of the mouth beneath the tongue, anterior to the submandibular gland." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] is_a: VT:0003792 ! major salivary gland morphology trait [Term] id: VT:0004043 name: pH regulation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of the buffer systems of the body in combination with the respiratory and renal systems that control the relative acidity or alkalinity of the body, as measured by the concentration of hydrogen ion." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "hydrogen ion homeostasis" EXACT [] xref: GO:0006885 "regulation of pH" is_a: VT:0001765 ! ion homeostasis trait [Term] id: VT:0004047 name: milk trait namespace: Trait.ontology def: "Any measurable characteristic related to the content or the appearance of milk." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: ATOL:0000240 is_a: VT:0010443 ! mammary gland secreted fluid morphology trait [Term] id: VT:0004050 name: kidney sympathetic nerve activity namespace: Trait.ontology def: "The degree of function or response of the nerve projecting to the kidney from the division of the nervous system that mediates the body's response to stress." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "renal sympathetic nerve activity" EXACT [] is_a: VT:0002136 ! kidney physiology trait [Term] id: VT:0004054 name: periocular mesenchyme morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye." [MP:0004054] is_a: VT:0001286 ! eye development trait [Term] id: VT:0004062 name: right atrium capacity namespace: Trait.ontology def: "The volume of or amount contained in the right upper chamber of the heart." [RGD:MS] synonym: "right atrial volume" RELATED [] is_a: VT:0000005 ! right atrium size trait [Term] id: VT:0004063 name: left atrium capacity namespace: Trait.ontology def: "The volume of or amount contained in the left upper chamber of the heart." [RGD:MS] synonym: "left atrial volume" RELATED [] is_a: VT:0000012 ! left atrium size trait [Term] id: VT:0004066 name: primitive node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo." [MP:0004066] synonym: "embryo node" EXACT [] synonym: "embryonic node" EXACT [] synonym: "Hensen's node morphology trait" EXACT [] synonym: "primitive knot morphology trait" EXACT [] is_a: VT:0002231 ! primitive streak morphology trait [Term] id: VT:0004067 name: ventricle trabeculae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the supporting bundles of muscular fibers lining the walls of the ventricles of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "ventricular trabeculae morphology trait" RELATED [] is_a: VT:0005294 ! heart ventricle morphology trait [Term] id: VT:0004069 name: muscle spindle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory organs in muscle that are involved in the stretch reflex." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "neuromuscular spindle morphology trait" EXACT [] is_a: VT:0000990 ! skeletal muscle mechanoreceptor morphology trait [Term] id: VT:0004074 name: Schwann cell precursor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the progenitors of cells that sheath the axons of the peripheral nervous system." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0004075 name: Schwann cell precursor quantity namespace: Trait.ontology def: "The proportion or number of the progenitors of cells that sheath the axons of the peripheral nervous system." [RGD:MS] synonym: "Schwann cell precursor number" EXACT [] is_a: VT:0004074 ! Schwann cell precursor morphology trait [Term] id: VT:0004076 name: vitelline vascular remodeling trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the conversion of the primary (honeycomb-like) vascular plexus of the yolk sac into a mature vascular network." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0004264 ! extraembryonic tissue physiology trait [Term] id: VT:0004077 name: striatum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0004077] synonym: "neostriatum morphology trait" EXACT [] synonym: "striate body morphology trait" EXACT [] is_a: VT:0000787 ! telencephalon morphology trait is_a: VT:0006007 ! basal ganglion morphology trait [Term] id: VT:0004078 name: caudate nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one or both C-shaped structures containing input neurons involved with control of voluntary movement in the brain." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0004078] is_a: VT:0004102 ! dorsal striatum morphology trait [Term] id: VT:0004079 name: putamen morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lens-shaped basal ganglion involved with control of voluntary movement in the brain." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0004102 ! dorsal striatum morphology trait [Term] id: VT:0004080 name: nucleus accumbens morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of neurons located at the head of the caudate nucleus and anterior to the putamen; these neurons normally are involved in sensations of pleasure and reactions to addictive substances." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0004080] synonym: "accumbens nucleus morphology trait" EXACT [] synonym: "Nacc morphology trait" EXACT [] is_a: VT:0004103 ! ventral striatum morphology trait is_a: VT:0004166 ! limbic system morphology trait [Term] id: VT:0004081 name: globus pallidus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one of the basal ganglia involved with control of voluntary movement in the brain; consists of an external and an internal segment." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0004081] synonym: "paleostriatum morphology trait" EXACT [] synonym: "pallidum morphology trait" EXACT [] is_a: VT:0000830 ! diencephalon morphology trait is_a: VT:0006007 ! basal ganglion morphology trait [Term] id: VT:0004082 name: habenula morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of nuclei that makes up the small eminence on the dorsomedial surface of the thalamus, just in front of the dorsal commissure on the lateral edge of the habenular trigone." [MP:0004082] comment: Note that the habenula term originally denoted the stalk of the pineal gland, but now refers to the habenular nucleus, a neighboring group of neurons in the epithalamus synonym: "habenular nucleus morphology trait" RELATED [] is_a: VT:0000840 ! epithalamus morphology trait [Term] id: VT:0004087 name: muscle cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells comprising the contractile tissue that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002108 ! muscular system morphology trait [Term] id: VT:0004088 name: sarcoplasmic reticulum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the endoplasmic reticulum of skeletal or cardiac muscle, i.e., the complex of vesicles, tubules, and cisternae that form a continuous structure around striated myofibrils, with a repetition of structure within each sarcomere." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004087 ! muscle cell morphology trait [Term] id: VT:0004090 name: sarcomere morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the segment of a myofibril between two Z lines comprised of multi-protein complexes composed of three different filament systems; these systems work together to contract and relax muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004087 ! muscle cell morphology trait [Term] id: VT:0004091 name: Z line morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cross-striation bisecting the I band of striated muscle myofibrils and serving as the anchoring point of actin filaments at either end of the sarcomere." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "intermediate disk morphology trait" EXACT [] synonym: "Z band morphology trait" EXACT [] synonym: "Z disk morphology trait" EXACT [] is_a: VT:0004090 ! sarcomere morphology trait [Term] id: VT:0004093 name: Z line configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the cross-striation bisecting the I band of striated muscle myofibrils and serving as the anchoring point of actin filaments at either end of the sarcomere." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004091 ! Z line morphology trait [Term] id: VT:0004094 name: M line morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fine line in the center of the A band of the sarcomere of striated muscle myofibrils." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0004090 ! sarcomere morphology trait [Term] id: VT:0004095 name: eyelash morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the short hairs fringing the edge of the eyelid." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001340 ! eyelid morphology trait [Term] id: VT:0004096 name: midbrain-hindbrain boundary development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the midbrain-hindbrain domain, comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages during its formation and differentiation; this area is an organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0003864 ! midbrain development trait [Term] id: VT:0004097 name: cerebellar cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the thin mantle of gray matter that covers the surface of each cerebral hemisphere, including the six layers of nerve cells and the nerve pathways that connect them; together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000849 ! cerebellum morphology trait [Term] id: VT:0004098 name: cerebellar granule cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small neurons of the granule cell layer that send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] synonym: "cerebellar granule neuron morphology trait" EXACT [] synonym: "granule cell morphology trait" EXACT [] is_a: VT:0000886 ! cerebellar granule layer morphology trait [Term] id: VT:0004099 name: cerebellar glomerulus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0000886 ! cerebellar granule layer morphology trait [Term] id: VT:0004100 name: spinal cord interneuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of neurons that exclusively interact with other neurons in the spinal cord." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000955 ! spinal cord morphology trait is_a: VT:0006004 ! interneuron morphology trait [Term] id: VT:0004101 name: brain interneuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that exclusively interact with other neurons in the brain; this includes most brain neuronal cell types." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002152 ! brain morphology trait is_a: VT:0006004 ! interneuron morphology trait [Term] id: VT:0004102 name: dorsal striatum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the regions of the caudate nucleus and the putamen that lie dorsal to the anterior commissure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004102] synonym: "caudate putamen complex morphology trait" EXACT [] synonym: "caudate-putamen morphology trait" EXACT [] synonym: "caudatoputamen morphology trait" EXACT [] synonym: "dorsal basal ganglia morphology trait" EXACT [] is_a: VT:0004077 ! striatum morphology trait [Term] id: VT:0004103 name: ventral striatum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the regions of the nucleus accumbens and some nuclei of the olfactory tubercle that lie ventral to the anterior commissure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004103] is_a: VT:0004077 ! striatum morphology trait [Term] id: VT:0004104 name: eye shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the organ of vision." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0004107 name: thoracic duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the largest lymph vessel in the body, beginning at the cisterna chyli at about the level of the second lumbar vertebra." [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "ductus thoracicus morphology trait" EXACT [] synonym: "Pecquet duct morphology trait" EXACT [] synonym: "van Horne canal morphology trait" EXACT [] is_a: VT:0001879 ! lymphatic vessel morphology trait [Term] id: VT:0004108 name: esophageal peristalsis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the esophageal movement characterized by waves of alternate circular contraction and relaxation of the muscular walls that move the esophagus contents forward." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001664 ! digestion trait [Term] id: VT:0004109 name: Sertoli cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cells of the seminiferous tubules that create the blood-testes barrier and enable spermatogenesis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] xref: ATOL:0000500 is_a: VT:0003830 ! testes development trait [Term] id: VT:0004111 name: coronary artery morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the arteries that branch from the aorta to supply blood to the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: MP:0004111 is_a: VT:0002191 ! artery morphology trait [Term] id: VT:0004113 name: aortic arch morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the descending aorta proceeding from the arch of the aorta and extending to the diaphragm." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] is_a: VT:0000272 ! aorta morphology trait [Term] id: VT:0004114 name: atrioventricular node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the small nodular mass of specialized muscle fibers located in the interatrial septum near the opening of the coronary sinus; this node gives rise to the electrical connection between the atria and ventricles and responds to the sinoatrial node." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] is_a: VT:0000019 ! right atrium morphology trait is_a: VT:0004123 ! impulse conducting system morphology trait [Term] id: VT:0004115 name: sinoatrial node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the small mass of modified cardiac muscle fibers located at the junction of the superior vena cava and the right atrium that is the source of contraction impulses for the heart." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "pacemaker morphology trait" EXACT [] synonym: "sinus node morphology trait" EXACT [] is_a: VT:0000019 ! right atrium morphology trait is_a: VT:0004123 ! impulse conducting system morphology trait [Term] id: VT:0004117 name: atrioventricular bundle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the specialized cardiac muscle fibers that originate in the atrioventricular node and extend into the ventricle." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "AV bundle morphology trait" EXACT [] synonym: "bundle of His morphology trait" EXACT [] is_a: VT:0000019 ! right atrium morphology trait is_a: VT:0004123 ! impulse conducting system morphology trait [Term] id: VT:0004118 name: baroreceptor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "pressoreceptor morphology trait" EXACT [] is_a: VT:0000972 ! mechanoreceptor morphology trait [Term] id: VT:0004121 name: sarcolemma morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the plasma membrane of a muscle fiber that is capable of conducting electrical impulses." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "myolemma morphology trait" EXACT [] is_a: VT:0004087 ! muscle cell morphology trait [Term] id: VT:0004123 name: impulse conducting system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the impulse-conducting system composed of modified cardiac muscle and having the power of spontaneous rhythmicity and conduction more highly developed than the rest of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: MP:0004123 is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0004124 name: Purkinje fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cardiac muscle fibers composing the terminal portion of the heart conduction system located in the ventricle." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] is_a: VT:0004123 ! impulse conducting system morphology trait [Term] id: VT:0004127 name: hypodermis thickness namespace: Trait.ontology def: "The distance between the surfaces of the irregular layer of adipose and connective tissue, stroma, or membrane immediately deep to the skin and superficial to the deep fascia." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003705 ! hypodermis morphology trait [Term] id: VT:0004128 name: adipocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells in the body that store fats." [MP:0009115] synonym: "fat cell morphology trait" EXACT [] synonym: "lipocyte morphology trait" EXACT [] is_a: VT:0000003 ! adipose morphology trait [Term] id: VT:0004130 name: muscle cell glucose uptake trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of contractile cells that effect movement of an organ or part of the body to take in the monosaccharide that is the end product of carbohydrate digestion." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002106 ! muscular system physiology trait [Term] id: VT:0004131 name: embryonic cilia morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the earliest cilia of the embryo, found on the cells of the embryonic node." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004066 ! primitive node morphology trait [Term] id: VT:0004134 name: thorax morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the part of the body between the head and the abdomen or any of its component parts." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:10608859] synonym: "chest morphology trait" NARROW [] is_a: VT:0015059 ! thorax trait [Term] id: VT:0004135 name: mammary gland embryonic development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation during early embryogenesis of the milk-secreting gland in female mammals." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000628 ! mammary gland development trait [Term] id: VT:0004136 name: tongue muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscular portion of the mobile mass of muscular tissue and surrounding epithelial tissue occupying the cavity of the mouth and forming part of the floor." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000759 ! skeletal muscle morphology trait [Term] id: VT:0004137 name: gastric surface mucous cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mucus secreting epithelial cells that line the luminal surface of the stomach, gastric pits and gastric glands." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0005209 ! gastric mucosa morphology trait [Term] id: VT:0004138 name: mucous neck cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mucin-producing epithelial cells present in the neck of the gastric glands." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0003892 ! gastric gland morphology trait [Term] id: VT:0004139 name: gastric parietal cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the gastric acid producing epithelial cells that are distributed throughout the length of the gastric gland." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0003892 ! gastric gland morphology trait [Term] id: VT:0004140 name: chief cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the pepsinogen producing epithelial cells that are clustered at the base of the gastric gland." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0003892 ! gastric gland morphology trait [Term] id: VT:0004141 name: enteroendocrine cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the somatostatin and gastrin secreting epithelial cells present throughout the epithelium of the digestive tract." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0000511 ! intestinal mucosa morphology trait is_a: VT:0003892 ! gastric gland morphology trait [Term] id: VT:0004142 name: muscle tone namespace: Trait.ontology def: "The resting tautness or laxity of a muscle, normally somewhere in the middle of the range between total contraction and total relaxation." [MP:0004142] is_a: VT:0002106 ! muscular system physiology trait [Term] id: VT:0004145 name: muscle electrophysiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree of function or response of the musculature as it relates to electrical phenomena." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "muscle electrical activity" EXACT [] is_a: VT:0002106 ! muscular system physiology trait [Term] id: VT:0004147 name: porphyrin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of porphyrins or protoporphyrins." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015077 ! molecule homeostasis trait [Term] id: VT:0004152 name: blood iron amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this metallic element that normally occurs in the heme of hemoglobin, myoglobin, transferrin, ferritin, and iron-containing porphyrins; it is an essential component of enzymes such as catalase, peroxidase, and various cytochromes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood iron level" RELATED [] is_a: VT:0000068 ! blood mineral amount [Term] id: VT:0004153 name: kidney tubule apoptosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which the cells of the loops of Henle, proximal and distal convoluted tubules, and collecting ducts in the kidney undergo programmed cell death." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "renal tubular apoptosis" EXACT [] synonym: "renal tubule apoptosis" EXACT [] is_a: VT:0003606 ! nephron physiology trait [Term] id: VT:0004162 name: mammillary body morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei." [MP:0004162] is_a: VT:0000830 ! diencephalon morphology trait [Term] id: VT:0004163 name: adenophysis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anterior part of the pituitary that secretes a variety of hormones; its function is regulated by the hypothalamus." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "adenohypophysis morphology trait" EXACT [] is_a: VT:0000633 ! pituitary gland morphology trait [Term] id: VT:0004164 name: neurophysis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the posterior part of the pituitary gland that secretes hormones involved in blood pressure regulation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000633 ! pituitary gland morphology trait [Term] id: VT:0004165 name: lateral geniculate nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of neurons that serve as the primary processor of visual information received from the retina via the optic tract and send processed information to the visual cortex of the occipital lobe." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004165] synonym: "LGN morphology trait" EXACT [] is_a: VT:0000832 ! thalamus morphology trait [Term] id: VT:0004166 name: limbic system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of a collection of structures in the brain involved in emotion, motivation and emotional aspects of memory; these structures act together to control the endocrine system and the autonomic nervous system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000783 ! forebrain morphology trait [Term] id: VT:0004167 name: cingulate gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the ridge in the cerebral cortex located dorsal to the corpus callosum that controls autonomic functions regulating heart rate and blood pressure as well as cognitive and attentional processing." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "callosal gyrus morphology trait" EXACT [] synonym: "falciform lobe morphology trait" EXACT [] is_a: VT:0000788 ! cerebral cortex morphology trait is_a: VT:0004169 ! fornicate gyrus morphology trait [Term] id: VT:0004168 name: parahippocampal gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the ridge in the cerebral cortex that contains the olfactory cortex and that plays a role in the formation of topographical memory." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000801 ! temporal lobe morphology trait is_a: VT:0004169 ! fornicate gyrus morphology trait [Term] id: VT:0004169 name: fornicate gyrus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the horseshoe-shaped gyrus of the cerebral cortex that consists of the cingulate gyrus and the parahippocampal gyrus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "limbic lobe morphology trait" EXACT [] is_a: VT:0004166 ! limbic system morphology trait [Term] id: VT:0004170 name: orbitofrontal cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the region of the cerebral cortex covering the basal surface of the frontal lobes; this region normally controls emotion and decision making." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000798 ! frontal lobe morphology trait is_a: VT:0004166 ! limbic system morphology trait [Term] id: VT:0004171 name: pallium development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of roof region of the telencephalon during its formation and differentiation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000934 ! telencephalon development trait [Term] id: VT:0004172 name: subpallium development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the base region of the telencephalon during its formation and differentiation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000934 ! telencephalon development trait [Term] id: VT:0004173 name: intervertebral disk morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cartilaginous and gelatinous structures found between the bodies of adjacent vertebrae." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "intervertebral cartilage morphology trait" EXACT [] is_a: VT:0000163 ! cartilage morphology trait is_a: VT:0010086 ! vertebral column morphology trait [Term] id: VT:0004174 name: vertebral column orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of vertebra within the spinal column and the resulting rectilinear direction or curvature produced." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: VT:0010086 ! vertebral column morphology trait [Term] id: VT:0004182 name: spermiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process in which mature spermatozoa are released from supporting Sertoli cells into spermiduct or vas deferens." [ATOL:0000502] xref: ATOL:0000502 is_a: VT:0001932 ! spermiogenesis trait [Term] id: VT:0004183 name: sympathetic nervous system physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the functions of or processes in the part of the autonomic nervous system that innervates smooth muscle, cardiac muscle and glands and mediates the body's response to stressful situations." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0006276 ! autonomic nervous system physiology trait [Term] id: VT:0004184 name: baroreceptor physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the functions of or processes in the sensory nerve endings found in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "baroreflex function" NARROW [] synonym: "pressoreceptor physiology trait" EXACT [] is_a: VT:0004183 ! sympathetic nervous system physiology trait [Term] id: VT:0004185 name: adipocyte glucose uptake trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of fat-storing cells to take in the monosaccharide that is the end product of carbohydrate digestion; D-glucose serves as a primary energy source for living organisms." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0005666 ! adipose physiology trait [Term] id: VT:0004186 name: area postrema morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small, elevated area in the lateral wall of the inferior recess of the fourth ventricle, involved in the control of cardiorespiratory physiology." [MP:0004186] is_a: VT:0000828 ! fourth ventricle morphology trait [Term] id: VT:0004188 name: timing of embryo turning namespace: Trait.ontology def: "The time of completion of axial rotation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001700 ! embryo turning trait [Term] id: VT:0004189 name: alveolar process morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the projecting ridge of bone that holds the tooth sockets." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004189] synonym: "alveolar body morphology trait" EXACT [] synonym: "alveolar bone morphology trait" EXACT [] is_a: VT:0000454 ! jaw morphology trait [Term] id: VT:0004190 name: direction of embryo turning namespace: Trait.ontology def: "The direction of axial rotation of the embryo when viewed towards the caudal pole during the late primitive streak/early somite stage (Mus E8.5-E9.5)." [ISBN:0-12-402035-6 "Kaufman, MH The Atlas of Mouse Development"] is_a: VT:0001700 ! embryo turning trait [Term] id: VT:0004192 name: kidney pyramid morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the conical mass of tissue, containing part of the secreting and collecting tubules, whose base faces the renal cortex." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "malpighian pyramid morphology trait" EXACT [] synonym: "medullary pyramid morphology trait" EXACT [] is_a: VT:0003014 ! kidney medulla morphology trait [Term] id: VT:0004193 name: kidney papilla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the apex of the renal pyramid that projects into a calyx." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0004192 ! kidney pyramid morphology trait [Term] id: VT:0004194 name: kidney pelvis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the flattened, funnel-shaped expansion of the ureter that is formed by convergence of the major calices." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002135 ! kidney morphology trait [Term] id: VT:0004195 name: calyx morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the branches of the renal pelvis that surround each renal papilla and collect urine." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0004194 ! kidney pelvis morphology trait [Term] id: VT:0004201 name: fetal growth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the increase in size or mass during the fetal period (sensu Mus: from E14 through birth)." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] is_a: VT:0100007 ! growth trait [Term] id: VT:0004203 name: cranial flexure morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sharp, ventrally concave bend in the developing midbrain of the embryo." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:2205396] synonym: "cephalic flexure morphology trait" EXACT [] synonym: "cerebral flexure morphology trait" EXACT [] synonym: "mesencephalic flexure morphology trait" EXACT [] is_a: VT:0003864 ! midbrain development trait [Term] id: VT:0004204 name: stapes size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the smallest and innermost of the three auditory ossicles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005107] is_a: VT:0003739 ! auditory ossicle size trait is_a: VT:0005107 ! stapes morphology trait [Term] id: VT:0004206 name: dermomyotome development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the portion of the embryonic somite that remains after migration of the sclerotomic tissue." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:9811581] xref: ATOL:0000504 is_a: VT:0000729 ! skeletal myogenesis trait [Term] id: VT:0004209 name: sweet taste sensitivity namespace: Trait.ontology def: "The ability to perceive a particular flavor or suggestion of something sweet by the chemoreceptors of the gustatory system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MP:0004209] xref: ATOL:0000785 xref: GO:0050916 "sensory perception of sweet taste" is_a: VT:0001986 ! taste sensitivity trait [Term] id: VT:0004210 name: bitter taste sensitivity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to perceive a particular flavor or suggestion of something bitter by the chemoreceptors of the gustatory system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MP:0004210] xref: ATOL:0000782 xref: GO:0050913 "sensory perception of bitter taste" is_a: VT:0001986 ! taste sensitivity trait [Term] id: VT:0004211 name: sour taste sensitivity namespace: Trait.ontology def: "The ability to perceive a particular flavor or suggestion of something sour by the chemoreceptors of the gustatory system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MP:0004211] xref: ATOL:0000784 xref: GO:0050915 "sensory perception of sour taste" is_a: VT:0001986 ! taste sensitivity trait [Term] id: VT:0004212 name: salty taste sensitivity namespace: Trait.ontology def: "The ability to perceive a particular flavor or suggestion of something salty by the chemoreceptors of the gustatory system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MP:0004212] xref: ATOL:0000783 xref: GO:0050914 "sensory perception of salty taste" is_a: VT:0001986 ! taste sensitivity trait [Term] id: VT:0004213 name: umami taste sensitivity namespace: Trait.ontology def: "The ability to perceive a particular flavor or suggestion of something umami (savory) by the chemoreceptors of the gustatory system." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MP:0004213] xref: ATOL:0000786 xref: GO:0050917 "sensory perception of umami taste" is_a: VT:0001986 ! taste sensitivity trait [Term] id: VT:0004214 name: long bone diaphysis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the main or mid section (shaft) of a long bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] synonym: "diaphysis morphology trait" EXACT [] synonym: "long bone shaft morphology trait" EXACT [] is_a: VT:0003723 ! long bone morphology trait [Term] id: VT:0004220 name: peripheral nervous system regeneration trait namespace: Trait.ontology def: "Any measurable characteristic related to the ability of peripheral nervous system tissue to regenerate following injury or disease." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0004221 name: iridocorneal angle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, or pattern of any of the acute angles occurring between the iris and the cornea at the periphery of the anterior chamber of the eye." [MP:0004221] synonym: "filtration angle morphology trait" EXACT [] synonym: "morphology trait of the angle of the iris" EXACT [] is_a: VT:0005198 ! aqueous drainage system morphology trait [Term] id: VT:0004223 name: trabecular meshwork size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates." [MP:0005203] is_a: VT:0005203 ! trabecular meshwork morphology trait [Term] id: VT:0004226 name: canal of Schlemm size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005204] synonym: "Schlemm's canal size trait" EXACT [] is_a: VT:0005204 ! canal of Schlemm morphology trait [Term] id: VT:0004229 name: embryonic erythropoiesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the processes in the development of primarily large, nucleated erythroblasts occurring in blood islands in the yolk sac, generally occurs from E7-E11 in the mouse and through 10 weeks in humans." [MP:0004229] synonym: "primitive erythropoiesis" EXACT [] is_a: VT:0003396 ! embryonic hematopoiesis trait [Term] id: VT:0004230 name: embryonic erythrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the embryonic blood cells that carry oxygen." [MP:0004230] synonym: "primitive erythrocyte morphology trait" EXACT [] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0004234 name: masticatory muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the muscles responsible for the movement of the jaws during mastication, including the masseter, temporalis, and medial and lateral pterygoid muscles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000759 ! skeletal muscle morphology trait [Term] id: VT:0004235 name: masseter muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the masticatory muscle of the posterior cheek with origin from the inferior border and medial surface of the zygomatic arch, with insertion into the lateral surface of the ramus of the mandible, with nerve supply from the masseteric nerve, and whose action closes the jaw during chewing." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004234 ! masticatory muscle morphology trait [Term] id: VT:0004236 name: masseter muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the masticatory muscle of the posterior cheek with origin from the inferior border and medial surface of the zygomatic arch, with insertion into the lateral surface of the ramus of the mandible, with nerve supply from the masseteric nerve, and whose action closes the jaw during chewing." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004235 ! masseter muscle morphology trait is_a: VT:0010113 ! masticatory muscle size trait [Term] id: VT:0004237 name: pterygoid muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscles descending from the sphenoid bone to the lower jaw including the internal, or medial, pterygoid muscle and external, or lateral, pterygoid muscle; action of the former is closing the jaws and that of the latter is opening the jaws, protruding the mandible, and moving the mandible from side to side." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004234 ! masticatory muscle morphology trait [Term] id: VT:0004238 name: pterygoid muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of either or both of the muscles descending from the sphenoid bone to the lower jaw including the internal, or medial, pterygoid muscle and external, or lateral, pterygoid muscle; action of the former is closing the jaws and that of the latter is opening the jaws, protruding the mandible, and moving the mandible from side to side." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004237 ! pterygoid muscle morphology trait is_a: VT:0010113 ! masticatory muscle size trait [Term] id: VT:0004239 name: temporalis muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the superior-most masticatory muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "musculus temporalis morphology trait" EXACT [] synonym: "temporal muscle morphology trait" EXACT [] synonym: "temporalis morphology trait" EXACT [] is_a: VT:0004234 ! masticatory muscle morphology trait [Term] id: VT:0004240 name: temporalis muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the superior-most masticatory muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0004239 ! temporalis muscle morphology trait is_a: VT:0010113 ! masticatory muscle size trait [Term] id: VT:0004242 name: plasmacytoid dendritic cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of phagocytic dendritic cells that are morphologically similar to plasma cells, but do not express B lineage markers, and produce large amounts of alpha/beta interferons (IFN-/) in response to viral and bacterial stimuli; plasmacytoid dendritic cells are found in the thymic medulla and lymph node T cell areas and are responsible for immune tolerance." [MP:0004242] synonym: "DC2 cell morphology trait" EXACT [] synonym: "lymphoid dendritic cell morphology trait" EXACT [] synonym: "pDC morphology trait" EXACT [] synonym: "plasmacytoid monocyte morphology trait" EXACT [] synonym: "plasmacytoid T cell morphology trait" EXACT [] synonym: "T-associated plasma cell morphology trait" EXACT [] is_a: VT:0005461 ! dendritic cell morphology trait [Term] id: VT:0004243 name: motor nerve terminal sprouting trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of a motor neuron to form new neuritic processes (sprouts) that emerge from the nodes of Ranvier or terminal arborizations in response to nerve injury (such as denervation), application of nerve toxin, or muscle inactivity (usually due to disease)." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0004220 ! peripheral nervous system regeneration trait [Term] id: VT:0004244 name: spontaneous abortion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the natural or accidental termination of a pregnancy at a stage where the embryo or the fetus is incapable of surviving independently of the mother." [MP:0004244] synonym: "miscarriage" EXACT [] xref: ATOL:0000506 is_a: VT:0003699 ! female reproductive system physiology trait [Term] id: VT:0004246 name: extensor digitorum longus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the penniform muscle of the lateral front part of the leg responsible for extension of the toes and dorsiflexion of the ankle." [ISBN:0-914294-08-3 "Gray's Anatomy", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "EDL morphology trait" EXACT [] is_a: VT:0010107 ! hindlimb muscle morphology trait [Term] id: VT:0004248 name: epaxial muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscles derived from the region of the myotome closest to the neural tube; includes the intrinsic back muscles." [ISBN:0-87893-258-5 "Developmental Biology, 7th Edition"] is_a: VT:0000759 ! skeletal muscle morphology trait [Term] id: VT:0004249 name: crista ampullaris morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the elevation found on the inner surface of the ampullae of each semicircular duct; filaments of the vestibular nerve pass through the crista to reach hair cells on its surface; the hair cells are capped by the cupula, a gelatinous protein-polysaccharide mass." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:10655058] synonym: "cristae morphology trait" EXACT [] is_a: VT:0002428 ! semicircular canal morphology trait [Term] id: VT:0004252 name: heart tube looping direction namespace: Trait.ontology def: "The orientation of bending during the process by which the embryonic heart tube bends to transform from a straight tube into the final folded configuration of the adult heart." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "cardiac looping direction" RELATED [] is_a: VT:0000269 ! heart tube looping morphogenesis trait [Term] id: VT:0004255 name: spongiotrophoblast layer morphology trait (sensu Rodentia) namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the middle layer of the placenta between the outermost giant cells and the innermost labyrinth layer; it has a structural role and also produces several layer-specific secreted factors." [MP:0004255] is_a: VT:0001711 ! placenta morphology trait [Term] id: VT:0004256 name: placenta maternal decidual layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the maternal uterine-derived portion of the placenta." [MP:0004256] is_a: VT:0001711 ! placenta morphology trait [Term] id: VT:0004257 name: placenta mass namespace: Trait.ontology def: "The amount of matter in the organ of metabolic interchange between fetus and mother." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0004258 ! placenta size trait [Term] id: VT:0004258 name: placenta size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the organ of metabolic interchange between fetus and mother." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004258] is_a: VT:0001711 ! placenta morphology trait [Term] id: VT:0004261 name: embryonic neuroepithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial cells that line the neural tube and develop into the neurons and glia of the nervous system and into the neural crest cells." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0004262 name: physical strength trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the ability of an organism to exert force on physical objects or of the body to support its load" [MGI:MP, MGI:smb] is_a: VT:0015005 ! parametrial fat pad morphology trait [Term] id: VT:0004263 name: limb posture trait namespace: Trait.ontology def: "any measurable characteristic related to the position of the limbs relative to the body" [MGI:smb] is_a: VT:0001504 ! posture trait [Term] id: VT:0004264 name: extraembryonic tissue physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the membranes involved with embryonic protection and nutrition." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004264] is_a: VT:0005380 ! embryonic development trait [Term] id: VT:0004265 name: placental transport trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the conveyance of metabolic products and nutrients across the placenta." [MP:0004265] is_a: VT:0010409 ! placenta physiology trait [Term] id: VT:0004266 name: placenta color namespace: Trait.ontology def: "The visually perceived hue of the organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001711 ! placenta morphology trait [Term] id: VT:0004267 name: optic tract morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the paired bands of optic nerve fibers running from the optic chiasma to the lateral geniculate body and midbrain." [MP:0004267] is_a: VT:0000778 ! nervous system tract morphology trait [Term] id: VT:0004268 name: optic stalk morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the narrow, proximal portion of the optic vesicle which connects the embryonic eye and forebrain." [ISBN:0-914294-08-3 "Gray's Anatomy", MP:0004268] is_a: VT:0001286 ! eye development trait [Term] id: VT:0004269 name: optic cup morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the double walled structure formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina; the mouth of the optic cup eventually forms the pupil of the eye." [MP:0004269] is_a: VT:0001286 ! eye development trait [Term] id: VT:0004271 name: paw/hand/foot/hoof morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the pedal or prehensile extremity of vertebrates." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002109 ! limb morphology trait [Term] id: VT:0004272 name: basement membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the extracellular supportive tissue adjacent to the basal surface of the epithelia, including the epithelium of muscle cells, fat cells and Schwann cells; it is comprised of type IV collagen, laminin, and sulfated proteoglycans and other components and consists of two layers, the basal lamina and the lamina reticularis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: Note: basal lamina and lamina reticularis (or of two basal laminae) compose the basement membrane. thus, in strict sense, the term basement membrane is different from and should not be confused with basal lamina. is_a: VT:0001248 ! connective tissue morphology trait [Term] id: VT:0004273 name: basal lamina morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sheet of extracellular matrix characteristically situated under epithelial cells, around muscles, nerves, capillaries, and fat cells, and situated between these elements and the underlying or surrounding connective tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: Note: basal lamina and lamina reticularis (or of two basal laminae) compose the basement membrane. thus, in strict sense, the term basement membrane is different from and should not be confused with basal lamina. is_a: VT:0004272 ! basement membrane morphology trait [Term] id: VT:0004274 name: embryonic/fetal subventricular zone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles." [MP:0004274] synonym: "embryonic subventricular zone morphology trait" EXACT [] synonym: "subventricular zone morphology trait" BROAD [] synonym: "SVZ morphology trait" BROAD [] is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0004275 name: postnatal subventricular zone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells." [MP:0004275] synonym: "subependymal layer morphology trait" EXACT [] synonym: "subependymal plate morphology trait" EXACT [] synonym: "subependymal zone morphology trait" EXACT [] synonym: "SVZ morphology trait" BROAD [] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0004276 name: medial ganglionic eminence morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276] synonym: "MGE morphology trait" EXACT [] is_a: VT:0004274 ! embryonic/fetal subventricular zone morphology trait [Term] id: VT:0004277 name: lateral ganglionic eminence morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE." [MP:0004277] synonym: "LGE morphology trait" EXACT [] is_a: VT:0004274 ! embryonic/fetal subventricular zone morphology trait [Term] id: VT:0004278 name: caudal ganglionic eminence morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle." [MP:0004278] synonym: "CGE morphology trait" EXACT [] is_a: VT:0004274 ! embryonic/fetal subventricular zone morphology trait [Term] id: VT:0004280 name: oculomotor nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of motor neurons in the floor of the midbrain that gives rise to motor fibers of the oculomotor nerve." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0000897 ! midbrain morphology trait [Term] id: VT:0004281 name: hypoglossal nucleus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the group of motor neurons throughout most of the length of the medulla oblongata that give rise to the motor fibers of the hypoglossal nerve." [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"] is_a: VT:0000846 ! medulla oblongata morphology trait [Term] id: VT:0004284 name: Descemet membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea, considered to be a highly developed basement membrane." [MP:0004284] synonym: "amina limitans posterior corneae morphology trait" EXACT [] synonym: "Duddell membrane morphology trait" EXACT [] synonym: "entocornea morphology trait" EXACT [] synonym: "hyaloid membrane morphology trait" EXACT [] synonym: "lamina elastica posterior morphology trait" EXACT [] synonym: "membrana hyaloidea morphology trait" EXACT [] synonym: "membrana vitrea morphology trait" EXACT [] synonym: "posterior elastic layer morphology trait" EXACT [] synonym: "posterior limiting lamina of cornea morphology trait" EXACT [] synonym: "posterior limiting layer of cornea morphology trait" EXACT [] synonym: "tunica vitrea morphology trait" EXACT [] synonym: "vitreous membrane morphology trait" EXACT [] is_a: VT:0001312 ! cornea morphology trait [Term] id: VT:0004286 name: internal auditory canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the canal beginning at the opening of the internal acoustic meatus in the posterior cranial fossa, passing laterally through the petrous portion of the temporal bone to end at the fundus, where a thin plate of bone separates it from the vestibule; it gives passage to the facial and vestibulocochlear nerves together with the labyrinthine artery and veins." [MP:0004286] synonym: "internal acoustic meatus morphology trait" EXACT [] synonym: "internal auditory meatus morphology trait" EXACT [] synonym: "meatus auditorius internus morphology trait" EXACT [] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0004287 name: spiral limbus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the border of the spiral lamina, i.e., the thickened periosteum covering the upper plate of the bony spiral lamina of the cochlea." [MP:0004287] synonym: "limbus laminae spiralis osseae morphology trait" EXACT [] synonym: "limbus spiralis morphology trait" EXACT [] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0004288 name: spiral ligament morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thickened periosteal lining of the bony cochlea that forms the outer wall of the cochlear duct to which the basal lamina attaches." [MP:0004288] synonym: "crista spiralis morphology trait" EXACT [] synonym: "ligamentum spirale cochleae morphology trait" EXACT [] synonym: "ligamentum spirale ductus cochlearis morphology trait" EXACT [] synonym: "spiral crest morphology trait" EXACT [] synonym: "spiral ligament of cochlea morphology trait" EXACT [] synonym: "spiral ligament of cochlear duct morphology trait" EXACT [] is_a: VT:0003169 ! scala media morphology trait [Term] id: VT:0004289 name: bony labyrinth morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the series of cavities (cochlea, vestibule, and semicircular canals) contained within the otic capsule of the petrous portion of the temporal bone; the bony labyrinth is filled with perilymph, in which the delicate, endolymph-filled membranous labyrinth is suspended." [MP:0004289] synonym: "labyrinthus osseus morphology trait" EXACT [] synonym: "osseous labyrinth morphology trait" EXACT [] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0004290 name: stapes footpiece morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the flat portion of the stapes that fits in the oval window." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004290] synonym: "base of stapes" EXACT [] synonym: "basis stapedis morphology trait" EXACT [] synonym: "stapes footplate morphology trait" EXACT [] is_a: VT:0005107 ! stapes morphology trait [Term] id: VT:0004291 name: conductive hearing physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in sound conduction through the middle-ear apparatus, e.g., velocity transfer responses at the umbo or incus level during sound stimulation of the tympanic membrane." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "conductive hearing function" RELATED [] synonym: "middle-ear sound conduction" RELATED [] is_a: VT:0002104 ! hearing physiology trait [Term] id: VT:0004292 name: spiral ligament fibrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the four types of fibrocytes (types I, II , III and IV) that constitute the spiral ligament." [MP:0004292] is_a: VT:0004288 ! spiral ligament morphology trait [Term] id: VT:0004293 name: type I spiral ligament fibrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the type I spiral ligament fibrocytes which occupy the region beneath the stria vascularis." [MP:00004293] is_a: VT:0004292 ! spiral ligament fibrocyte morphology trait [Term] id: VT:0004294 name: type II spiral ligament fibrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the type II spiral ligament fibrocytes found in the suprastrial zone and the central area of the spiral ligament beneath the spiral prominence." [MP:0004294] is_a: VT:0004292 ! spiral ligament fibrocyte morphology trait [Term] id: VT:0004295 name: type III spiral ligament fibrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the type III spiral ligament fibrocytes which form a cell layer attached to the otic capsule." [MP:0004295] is_a: VT:0004292 ! spiral ligament fibrocyte morphology trait [Term] id: VT:0004296 name: type IV spiral ligament fibrocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the type IV spiral ligament fibrocytes found in the triangular space inferior to the basilar crest." [MP:0004296] is_a: VT:0004292 ! spiral ligament fibrocyte morphology trait [Term] id: VT:0004297 name: proprioceptive neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory neurons of the dorsal root ganglia that sense body position and send information about how much the muscle is stretched to the spinal cord." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] is_a: VT:0000965 ! sensory neuron morphology trait is_a: VT:0002882 ! neuron morphology trait is_a: VT:0015101 ! proprioception system trait [Term] id: VT:0004300 name: organ of Corti supporting cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the highly differentiated epithelial cells with distinctive morphological features surrounding the hair cells in the organ of Corti; inner hair cells (IHCs) are normally surrounded by (inner and outer) phalangeal cells while OHCs are in contact with Deiters and pillar cells; Hensen cells are positioned further laterally in the organ of Corti." [MP:0004300] is_a: VT:0000042 ! organ of Corti morphology trait [Term] id: VT:0004302 name: Deiters cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the supporting cells of the spiral organ which are attached to the basement membrane and receive the hair cells between their free extremities." [MP:0004302] synonym: "phalangeal cell morphology trait" EXACT [] is_a: VT:0004300 ! organ of Corti supporting cell morphology trait [Term] id: VT:0004303 name: Hensen cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the supporting cells that form the lateral border of the organ of Corti, immediately to the outer side of Deiters' cells." [MP:0004303] is_a: VT:0004300 ! organ of Corti supporting cell morphology trait [Term] id: VT:0004305 name: Rosenthal canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the winding tube of the bony labyrinth that makes two and a half turns about the modiolus of the cochlea; it is divided incompletely into two compartments by a winding shelf of bone, the bony spiral lamina." [MP:0004305] synonym: "canalis spiralis cochleae morphology trait" EXACT [] synonym: "cochlear canal morphology trait" EXACT [] is_a: VT:0000031 ! cochlea morphology trait is_a: VT:0002729 ! inner ear canal morphology trait [Term] id: VT:0004306 name: Rosenthal canal size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the winding tube of the bony labyrinth that makes two and a half turns about the modiolus of the cochlea." [MP:0004305] synonym: "canalis spiralis cochleae size trait" EXACT [] synonym: "cochlear canal size trait" EXACT [] is_a: VT:0004305 ! Rosenthal canal morphology trait [Term] id: VT:0004308 name: basilar membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the membrane extending from the bony spiral membrane to the basilar crest of the cochlea; it forms the greater part of the floor of the cochlear duct separating the latter from the scala tympani, and it supports the organ of Corti." [MP:0004308] synonym: "basilar lamina morphology trait" EXACT [] synonym: "lamina basilaris cochleae morphology trait" EXACT [] synonym: "lamina basilaris ductus cochlearis morphology trait" EXACT [] synonym: "membrana basilaris morphology trait" EXACT [] synonym: "morphology trait of the basilar membrane of cochlear duct" EXACT [] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0004310 name: otic vesicle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the paired epithelial sacs formed from the otic placode that give rise to the structures of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0009806] synonym: "auditory vesicle size trait" EXACT [] is_a: VT:0006030 ! otic vesicle morphology trait [Term] id: VT:0004311 name: otic vesicle cell quantity namespace: Trait.ontology def: "The proportion or number of the cells in the paired epithelial sacs formed from the otic placode that give rise to the structures of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0009806] synonym: "auditory vesicle cell number" EXACT [] synonym: "otic vesicle cell number" EXACT [] is_a: VT:0006030 ! otic vesicle morphology trait [Term] id: VT:0004313 name: vestibulocochlear ganglion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the group of neuron cell bodies associated with the eighth cranial nerve during embryogenesis; splits in later development to form the cochlear and vestibular ganglia." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003703 ! vestibulocochlear ganglion morphology trait [Term] id: VT:0004316 name: saccule size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to physical magnitude of the smaller of the two sacs in the vestibule." [MP:0006989] is_a: VT:0006089 ! saccule morphology trait [Term] id: VT:0004320 name: sternum shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the long, flat bone of the chest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000157 ! sternum morphology trait [Term] id: VT:0004321 name: sternum length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the long, flat bone of the chest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "keel length" RELATED [] is_a: VT:0004323 ! sternum size trait [Term] id: VT:0004322 name: sternebra morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the segments of the primordial sternum of the embryo; these segments fuse to form the body of the adult vertebrate sternum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000157 ! sternum morphology trait is_a: VT:0010005 ! bone development trait is_a: VT:0015061 ! thorax development trait [Term] id: VT:0004323 name: sternum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the long, flat bone of the chest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000157 ! sternum morphology trait [Term] id: VT:0004326 name: vestibular hair cell quantity namespace: Trait.ontology def: "The proportion or numbers of the cells in the sensory epithelium of the maculae and cristae of the membranous labyrinth of the internal ear." [MP:0004326] is_a: VT:0002623 ! vestibular hair cell morphology trait [Term] id: VT:0004330 name: saccular macula morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the oval neuroepithelial sensory receptor in the anterior wall of the saccule; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies." [MP:0004330] synonym: "macula sacculi morphology trait" EXACT [] synonym: "saccular spot morphology trait " RELATED [] is_a: VT:0006089 ! saccule morphology trait [Term] id: VT:0004333 name: utricular macula morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure or pattern of the neuroepithelial sensory receptor in the inferolateral wall of the utricle; hair cells of the neuroepithelium support the statoconial membrane and have terminal arborizations of vestibular nerve fibers around their bodies; normally sensitive to linear acceleration in the longitudinal axis of the body and to gravitational influences." [MP:0004333] synonym: "macula utriculi morphology trait" EXACT [] synonym: "utricular spot morphology trait" EXACT [] is_a: VT:0006090 ! utricle morphology trait [Term] id: VT:0004335 name: utricle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the larger of the two sacs in the vestibule." [MP:0006090] is_a: VT:0006090 ! utricle morphology trait [Term] id: VT:0004337 name: clavicle cell quantity namespace: Trait.ontology def: "The proportion or number of cells in one or both of the doubly curved long bones that form part of the shoulder girdle and articulate with the sternum and the scapula." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "clavicle cell number" EXACT [] is_a: VT:0005298 ! clavicle morphology trait [Term] id: VT:0004338 name: clavicle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of one or both of the doubly curved long bones that form part of the shoulder girdle and articulate with the sternum and the scapula." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005298 ! clavicle morphology trait [Term] id: VT:0004340 name: scapula length namespace: Trait.ontology def: "The distance from point to point along the longest axis of either or both of the large, flat bones of the shoulder girdle." [MP:0000149] is_a: VT:0004343 ! scapula size trait [Term] id: VT:0004343 name: scapula size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of either or both of the large, flat bones of the shoulder girdle." [MP:0000149] is_a: VT:0000149 ! scapula morphology trait [Term] id: VT:0004344 name: scapula bone cell quantity namespace: Trait.ontology def: "The proportion or number of bone cells in either or both of the large, flat bones of the shoulder girdle." [MP:0000149] synonym: "scapula bone cell number" EXACT [] synonym: "scapula cell number" BROAD [] is_a: VT:0000149 ! scapula morphology trait [Term] id: VT:0004345 name: acromion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lateral extension of the spine of the scapula which projects as a broad flattened process and articulates with the clavicle, and forms the point of the shoulder." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "acromial process morphology trait" EXACT [] is_a: VT:0000149 ! scapula morphology trait [Term] id: VT:0004347 name: scapular spine morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the triangular ridge on the dorsal aspect of the scapula, which separates the supra- from the infraspinatous fossa and where the trapezius and deltoid muscles are attached." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "spine of scapula morphology trait" EXACT [] is_a: VT:0000149 ! scapula morphology trait [Term] id: VT:0004348 name: femur length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:1000369 ! femur size trait [Term] id: VT:0004350 name: humerus length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100000 ! humerus size trait [Term] id: VT:0004353 name: deltoid tuberosity morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the rough elevation at the middle of the lateral side of the shaft of the humerus to which the deltoid muscle attaches." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "deltoid crest morphology trait" EXACT [] synonym: "deltoid eminence morphology trait" EXACT [] synonym: "deltoid impression morphology trait" EXACT [] synonym: "deltoid process morphology trait" EXACT [] is_a: VT:0005296 ! humerus morphology trait [Term] id: VT:0004355 name: radius length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the bone situated on the lateral side of the ulna in the forelimb." [ISBN:0-914294-08-3 "Gray's Anatomy"] is_a: VT:0000552 ! radius morphology trait [Term] id: VT:0004356 name: radius cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the bone situated on the lateral side of the ulna in the forelimb." [ISBN:0-914294-08-3 "Gray's Anatomy"] synonym: "radius cell number" EXACT [] is_a: VT:0000552 ! radius morphology trait [Term] id: VT:0004357 name: tibia length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100001 ! tibia size trait [Term] id: VT:0004358 name: tibia curvature trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree or shape of the bend in the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000558 ! tibia morphology trait [Term] id: VT:0004361 name: ulna curvature trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree or shape of the bend in the medial and larger of the two bones of the forearm or lower forelimb; fused with the radius in some species." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005108 ! ulna morphology trait [Term] id: VT:0004364 name: stria vascularis size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the stratified, secretory epithelium which lines the upper part of the cochlear spiral ligament and maintains K+ homeostasis in the endolymph." [MP:0000048] is_a: VT:0000048 ! stria vascularis morphology trait [Term] id: VT:0004365 name: strial basal cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, or pattern of the polarized cells which are juxtaposed to fibrocytes in the underlying spiral ligament." [MP:0004365] is_a: VT:0000048 ! stria vascularis morphology trait [Term] id: VT:0004366 name: strial marginal cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the polarized columnar cells of epithelial origin which cover the lateral surface of the cochlear duct, secrete K+ and form a continuous sheet in contact with the endolymph; marginal cells form extensive interdigitations with the basal and intermediate cells in the normal adult stria." [MP:0004366] is_a: VT:0000048 ! stria vascularis morphology trait [Term] id: VT:0004367 name: strial intermediate cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, or pattern of the melanocytes known to migrate from the neural crest during ontogeny to become located between the epithelial marginal cell layer and the mesodermal basal cell layer within the intrastrial space; the predominant cellular component of the electrogenic machinery that generates an endocochlear potential (80-100 mV)." [MP:0004367] synonym: "cochlear melanocyte morphology trait" EXACT [] synonym: "stria vascularis intermediate cell morphology trait" EXACT [] synonym: "stria vascularis melanocyte morphology trait" RELATED [] synonym: "strial melanocyte morphology trait" EXACT [] is_a: VT:0000048 ! stria vascularis morphology trait [Term] id: VT:0004368 name: stria vascularis blood vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the blood vessels supplying the stria vascularis in the cochlea of the inner ear." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "morphology trait of the stria vascularis vasculature" EXACT [] synonym: "strial vascular morphology trait" EXACT [] xref: MP:0004368 is_a: VT:0000048 ! stria vascularis morphology trait is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0004370 name: ulna length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the medial and larger of the two bones of the forearm or lower forelimb; fused with the radius in some species." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005108 ! ulna morphology trait [Term] id: VT:0004371 name: femur curvature namespace: Trait.ontology def: "The degree or shape of the bend in the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000559 ! femur morphology trait [Term] id: VT:0004372 name: fibula curvature trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree or shape of the bend in the lateral and smaller bone of the lower/hind limb." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002187 ! fibula morphology trait [Term] id: VT:0004373 name: humerus curvature trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree or shape of the bend in the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005296 ! humerus morphology trait [Term] id: VT:0004374 name: radius curvature trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree or shape of the bend in the bone situated on the lateral side of the ulna in the forelimb." [ISBN:0-914294-08-3 "Gray's Anatomy"] is_a: VT:0000552 ! radius morphology trait [Term] id: VT:0004387 name: prechordal plate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the horseshoe-shaped thickening of the endoderm at the cranial (rostral) end of the primitive streak formed by the involution of Spemann's organizer cells which, together with the notochord, induces the formation of the neural plate from the overlying ectodermal cells and contributes mesodermal type cells to the surrounding tissue." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0004389 name: respiratory bronchiole morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the smallest bronchioles, which connect the terminal bronchioles to alveolar ducts and have alveoli rising from their walls." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] is_a: VT:0002267 ! bronchiole morphology trait [Term] id: VT:0004390 name: bronchoalveolar duct junction morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the branch point connecting the respiratory bronchioles to the alveolar ducts." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:brs "Beverly Richards-Smith, Mouse Genome Informatics Curator"] is_a: VT:0002271 ! respiratory alveolar duct morphology trait is_a: VT:0004389 ! respiratory bronchiole morphology trait [Term] id: VT:0004391 name: respiratory conducting tube morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tubes of the respiratory system that allow passage of air from the trachea to the alveoli of the lungs." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "respiratory passage morphology trait" EXACT [] is_a: VT:0001175 ! lung morphology trait [Term] id: VT:0004392 name: CD8-positive T cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the subset of T lymphocytes that express the CD8 marker on the cell surface." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CD8+ T cell physiology trait" EXACT [] synonym: "single positive T cell physiology trait" BROAD [] is_a: VT:0002444 ! T cell physiology trait [Term] id: VT:0004393 name: cochlear inner hair cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory cells of the organ of Corti which are in synaptic contact with sensory as well as efferent fibers of the auditory nerve; there is a single row of flask-shaped inner hair cells tightly surrounded by supporting interphalangeal cells; the apical end of each cell is anchored to the cuticular plate and about 100 stereocilia arranged in a more or less linear (or shallow) U-shaped pattern extend from the cell's surface through the cuticular plate into the endolymphic space inferior to the tectorial membrane." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004393] synonym: "cochlear IHC morphology trait" EXACT [] is_a: VT:0002622 ! cochlear hair cell morphology trait [Term] id: VT:0004394 name: cochlear inner hair cell quantity namespace: Trait.ontology def: "The proportion or number of the flask-shaped inner hair sensory cells of the organ of Corti which are in synaptic contact with sensory as well as efferent fibers of the auditory nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004394] synonym: "auditory inner hair cell number" EXACT [] is_a: VT:0004393 ! cochlear inner hair cell morphology trait [Term] id: VT:0004399 name: cochlear outer hair cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sensory cells of the organ of Corti which are in synaptic contact with sensory as well as efferent fibers of the auditory nerve; there are three rows of columnar outer hair cells largely surrounded by cortilymph and supporting phalangeal cells; the apical end of each cell is anchored to the cuticular plate and about 100 stereocilia arranged in a V-shaped pattern extend from the cell's surface through the cuticular plate into the tectorial membrane." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "cochlear OHC morphology trait" EXACT [] is_a: VT:0002622 ! cochlear hair cell morphology trait [Term] id: VT:0004400 name: cochlear outer hair cell quantity namespace: Trait.ontology def: "The proportion or number of the columnar outer hair sensory cells of the organ of Corti." [MP:0004400] synonym: "auditory outer hair cell number" EXACT [] is_a: VT:0004399 ! cochlear outer hair cell morphology trait [Term] id: VT:0004406 name: cochlear hair cell quantity namespace: Trait.ontology def: "The proportion or number of the sensory epithelial cells of the cochlea, which are normally in synaptic contact with the auditory nerve." [MP:0004406] synonym: "auditory hair cell number" EXACT [] synonym: "cochlear hair cell number" EXACT [] is_a: VT:0002622 ! cochlear hair cell morphology trait [Term] id: VT:0004409 name: ampullary crest neuroepithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the specialized sensory hair cells of the ampullary crest of the ampulla of each semicircular duct." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MP:0004409] is_a: VT:0004249 ! crista ampullaris morphology trait [Term] id: VT:0004412 name: cochlear potential trait namespace: Trait.ontology def: "Any measurable characteristic related to the bioelectric potentials produced by the hair cells of the organ of Corti in response to sound; cochlear microphonics faithfully represent the frequency and intensity of the acoustic stimulation." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000365 ! hearing electrophysiology trait is_a: VT:0000483 ! sensorineural hearing physiology trait [Term] id: VT:0004415 name: cochlear nerve compound action potential namespace: Trait.ontology def: "The combined potentials resulting from activation of the auditory division of the eighth cranial nerve." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "auditory nerve compound action potential" RELATED [] is_a: VT:0000365 ! hearing electrophysiology trait is_a: VT:0000483 ! sensorineural hearing physiology trait is_a: VT:0005402 ! action potential trait [Term] id: VT:0004423 name: squama temporalis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thin, scale-like part of the temporal bone forming part of the lateral wall of the cranial vault." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004423] synonym: "squamosal bone morphology trait" EXACT [] synonym: "squamous part of temporal bone morphology trait" EXACT [] is_a: VT:0005272 ! temporal bone morphology trait [Term] id: VT:0004425 name: otolith organ morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the utricle and saccule of the inner ear which possess otoliths and respond to linear acceleration and deceleration, including gravity." [MP:0004425] is_a: VT:0000034 ! vestibule morphology trait is_a: VT:0015096 ! equilibrioception system morphology trait [Term] id: VT:0004426 name: cochlear labyrinth morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the portion of the membranous labyrinth concerned with the sense of hearing (vs. the vestibular labyrinth, which is concerned with the sense of equilibration) and innervated by the cochlear nerve; it is located within the cochlea of the bony labyrinth, and consists of the cochlear duct, which contains the spiral organ." [MP:0004426] synonym: "labyrinthus cochlearis morphology trait" EXACT [] synonym: "organ of hearing morphology trait" EXACT [] is_a: VT:0000035 ! membranous labyrinth morphology trait [Term] id: VT:0004427 name: vestibular labyrinth morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the portion of the membranous labyrinth concerned with the sense of equilibration (vs. the cochlear labyrinth, which is concerned with the sense of hearing) and innervated by the vestibular nerve; it is located within the semicircular canals and vestibule of the bony labyrinth, and consists of the utricle, saccule, and the semicircular, utriculosaccular, and endolymphatic ducts." [MP:0004427] synonym: "labyrinthus vestibularis morphology trait" EXACT [] synonym: "vestibular organ morphology trait" EXACT [] is_a: VT:0000035 ! membranous labyrinth morphology trait [Term] id: VT:0004428 name: type I vestibular cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the flask-shaped sensory cells of the maculae and cristae of the vestibular labyrinth of the inner ear, which are normally enclosed in calyx endings of afferent neurons; afferent and efferent nerve fibers of the vestibular nerve synapse with them; from the apical end of each cell a bundle of stereocilia and a kinocilium extend into the otolithic membrane of the maculae or the cupula of the cristae." [MP:0004428] is_a: VT:0002623 ! vestibular hair cell morphology trait [Term] id: VT:0004429 name: type II vestibular cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cylindrical sensory cells of the maculae and cristae of the vestibular labyrinth of the inner ear which are normally contacted by bouton endings of afferent and efferent neurons; afferent and efferent nerve fibers of the vestibular nerve synapse with them; from the apical end of each cell a bundle of stereocilia and a kinocilium extend into the otolithic membrane of the maculae or the cupula of the cristae." [MP:0004429] is_a: VT:0002623 ! vestibular hair cell morphology trait [Term] id: VT:0004430 name: Claudius cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the columnar cells located on the floor of the ductus cochlearis external to the spiral organ." [MP:0004430] is_a: VT:0003169 ! scala media morphology trait [Term] id: VT:0004431 name: hair cell mechanoelectric transduction trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the conversion of mechanical energy into electric(al) energy by sensory cells, such as auditory and vestibular hair cells, required for auditory sensation." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003879 ! hair cell physiology trait [Term] id: VT:0004432 name: cochlear hair cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the cochlear hair cells, i.e., the sensory cells in the spiral organ which are in synaptic contact with sensory as well as efferent fibers of the cochlear (auditory) nerve." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003879 ! hair cell physiology trait [Term] id: VT:0004433 name: cochlear inner hair cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the cochlear IHCs which constitute the true sensory cell type sending impulses via the cochlear (auditory) nerve." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "cochlear IHC physiology trait" EXACT [] is_a: VT:0004432 ! cochlear hair cell physiology trait [Term] id: VT:0004434 name: cochlear outer hair cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the cochlear OHCs which are known to enhance the performance of the cochlea, both qualitatively (increased selectivity) and quantitatively (increased sensitivity); in addition to the mechanoelectric transduction required for auditory sensation, OHCs also perform electromechanical transduction, whereby transmembrane voltage drives rapid changes in the length and stiffness of OHCs at audio frequencies in vitro (electromotility)." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "cochlear OHC physiology trait" EXACT [] is_a: VT:0004432 ! cochlear hair cell physiology trait [Term] id: VT:0004435 name: cochlear outer hair cell electromotility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the motility of the cochlear OHCs in response to electrical stimulation; normally, the motile response (i.e. rapid change in length and stiffness of OHCs) is closely coupled to the changing transduction current and provides a region-specific amplification in the movement of the spiral organ that enhances transduction at the IHCs in that specific region of the cochlear spiral, increasing both sensitivity and specificity; electromotility is believed to arise through voltage-gated conformational changes in motor protein (prestin) or proteins located in the lateral wall of the OHC." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "electromechanical transduction" EXACT [] synonym: "OHC electromotility" EXACT [] is_a: VT:0004434 ! cochlear outer hair cell physiology trait [Term] id: VT:0004438 name: vestibular hair cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the sensory epithelium of the maculae and cristae in the membranous labyrinth of the inner ear." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0003879 ! hair cell physiology trait [Term] id: VT:0004448 name: presphenoid bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the anterior part of the body of the sphenoid bone in front of the basisphenoid; it is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004448] is_a: VT:0000104 ! sphenoid bone morphology trait [Term] id: VT:0004452 name: pterygoid process morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the process projecting downward from either side of the sphenoid bone, in vertebrates divided into two plates, an inner and an outer (sometimes called the lateral and medial); the posterior nares pass through the space, called the pterygoid fossa, between the processes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004452] is_a: VT:0000104 ! sphenoid bone morphology trait [Term] id: VT:0004453 name: pterygoid bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone region which corresponds to the inner plate of the pterygoid process of the mammalian skull." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004453] is_a: VT:0004452 ! pterygoid process morphology trait [Term] id: VT:0004457 name: orbitosphenoid morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone that is situated in the orbit on either side of the presphenoid; it generally forms a part of the sphenoid in the adult, and may be independent in the young." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004457] synonym: "orbitosphenoid bone morphology trait" EXACT [] is_a: VT:0000104 ! sphenoid bone morphology trait [Term] id: VT:0004466 name: cochlear outer hair cell length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the cochlear outer hair cells." [MP:0004399] is_a: VT:0004399 ! cochlear outer hair cell morphology trait [Term] id: VT:0004469 name: zygomatic arch morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bony arch in vertebrates that extends along the side or front of the skull beneath the eye socket and is formed by the temporal process of the zygomatic bone and the zygomatic process of the temporal bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004469] synonym: "malar arch morphology trait" EXACT [] synonym: "zygoma morphology trait" EXACT [] is_a: VT:0005246 ! orbit morphology trait [Term] id: VT:0004479 name: oval window morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004479] synonym: "fenestra ovalis morphology trait" EXACT [] synonym: "fenestra vestibuli morphology trait" EXACT [] synonym: "morphology trait of the fenestra of the vestibule" EXACT [] synonym: "vestibular window morphology trait" EXACT [] is_a: VT:0000049 ! middle ear morphology trait [Term] id: VT:0004480 name: round window morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the opening on the medial wall of the middle ear leading into the cochlea, closed in life by the secondary tympanic membrane; serves to regulate fluid pressure in the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004480] synonym: "cochlear window morphology trait" EXACT [] synonym: "fenestra cochleae morphology trait" EXACT [] synonym: "fenestra rotunda morphology trait" EXACT [] synonym: "morphology trait of the fenestra of the cochlea" EXACT [] is_a: VT:0000049 ! middle ear morphology trait [Term] id: VT:0004481 name: conjunctival epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the conjunctival layer of epithelial cells covering inner surface of the eyelid and the front of the eyeball except over the cornea." [MP:0004481] is_a: VT:0001310 ! conjunctiva morphology trait [Term] id: VT:0004482 name: interdental cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the long, spindle-shaped cells arranged in parallel rows, oriented with their vertical axis perpendicular to the luminal surface of the spiral limbus; they secrete K+ into the endolymph and secrete the tectoral membrane." [MP:0004482] is_a: VT:0004287 ! spiral limbus morphology trait [Term] id: VT:0004491 name: outer hair cell stereociliary bundle orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of outer hair cell (OHC) stereociliary bundles in relation to the hair cells." [MP:0004491] is_a: VT:0000892 ! cochlear hair cell stereociliary bundle orientation trait is_a: VT:0001028 ! cochlear outer hair cell stereociliary bundle morphology trait [Term] id: VT:0004492 name: inner hair cell stereociliary bundle orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of inner hair cell (IHC) stereociliary bundles in relation to the hair cells." [MP:0004492] is_a: VT:0000892 ! cochlear hair cell stereociliary bundle orientation trait is_a: VT:0001180 ! inner hair cell stereociliary bundle morphology trait [Term] id: VT:0004493 name: cochlea size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0004762 name: blood anti-double stranded DNA antibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies that recognize double stranded DNA." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "anti-double stranded DNA antibody concentration" RELATED [] synonym: "anti-double stranded DNA antibody level" RELATED [] synonym: "anti-double-stranded DNA antibody concentration" RELATED [] synonym: "anti-double-stranded DNA antibody level" RELATED [] synonym: "dsDNA antibody level" RELATED [] is_a: VT:0004794 ! blood anti-nuclear antigen antibody amount [Term] id: VT:0004771 name: blood anti-single stranded DNA antibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies that recognize single stranded DNA." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "anti-single stranded DNA antibody concentration" RELATED [] synonym: "anti-single stranded DNA antibody level" RELATED [] synonym: "anti-single-stranded DNA antibody concentration" RELATED [] synonym: "anti-single-stranded DNA antibody level" RELATED [] synonym: "anti-ssDNA antibody level" RELATED [] synonym: "circulating anti-single stranded DNA antibody amount" EXACT [] is_a: VT:0004794 ! blood anti-nuclear antigen antibody amount [Term] id: VT:0004794 name: blood anti-nuclear antigen antibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies to nuclear antigens." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "ANA level" RELATED [] synonym: "anti-nuclear antigen antibody concentration" RELATED [] synonym: "anti-nuclear antigen antibody level" RELATED [] is_a: VT:0003725 ! blood autoantibody amount [Term] id: VT:0004796 name: blood anti-histone antibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies to histones." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "anti-histone antibody concentration" RELATED [] synonym: "anti-histone antibody level" RELATED [] is_a: VT:0004794 ! blood anti-nuclear antigen antibody amount [Term] id: VT:0004797 name: blood anti-erythrocyte antigen antibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies to erythrocyte antigen." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "anti-erythrocyte antigen antibody concentration" RELATED [] synonym: "anti-erythrocyte antigen antibody level" RELATED [] synonym: "anti-RBC antibody level" RELATED [] is_a: VT:0003725 ! blood autoantibody amount [Term] id: VT:0004816 name: class switch recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the rearrangement of the heavy chain genes of differentiating B cells such that the initially encoded heavy chain IgM molecule is altered to one encoding IgG, IgA or IgE; normally, this allows the body to produce antibodies with different effector functions." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CSR" EXACT [] synonym: "isotype switching" EXACT [] is_a: VT:0002144 ! B cell development trait is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0004829 name: blood anti-chromatin antibody amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of antibodies that recognize chromatin." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "anti-chromatin antibody concentration" RELATED [] synonym: "anti-chromatin antibody level" RELATED [] is_a: VT:0004794 ! blood anti-nuclear antigen antibody amount [Term] id: VT:0004917 name: T cell selection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process through which T cells that express T cell receptors that are restricted by self MHC protein complexes and tolerant to self antigens are selected for further maturation." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0045058 "T cell selection" is_a: VT:0002145 ! T cell development trait [Term] id: VT:0004918 name: negative T cell selection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of elimination of immature T cells which react strongly with self-antigens." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0043383 "negative T cell selection" is_a: VT:0004917 ! T cell selection trait [Term] id: VT:0004919 name: positive T cell selection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0043368 "positive T cell selection" is_a: VT:0004917 ! T cell selection trait [Term] id: VT:0004939 name: B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of lymphocytes that expresses membrane-bound immunoglobulin complexes in the mature form, and differentiate into antibody-secreting plasma cells and memory cells upon interaction with antigen; B cells are the primary lymphocyte responsible for humoral immunity, and are most effective against extracellular pathogens." [CL:0000236, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "B lymphocyte morphology trait" EXACT [] synonym: "B-cell morphology trait" EXACT [] is_a: VT:0002619 ! lymphocyte morphology trait [Term] id: VT:0004940 name: B-1 B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the subset of B cells found predominantly in the peritoneum, pleural cavities, and spleen, which are enriched for self-reactivity; B-1 B cells are thought to be the primary source of natural IgM immunoglobulin, that is, IgM produced in large quantities without prior antigenic stimulation and generally reactive against various microorganisms, as well as the source of T-independent IgA immunoglobulin in the mucosal areas." [CL:0000819, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:11861604] synonym: "B-1 B lymphocyte morphology trait" EXACT [] synonym: "B-1 B-cell morphology trait" EXACT [] synonym: "B-1 B-lymphocyte morphology trait" EXACT [] synonym: "B1 cell morphology trait" EXACT [] is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0004941 name: regulatory T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the specialized subpopulation of T cells that act to suppress activation of the immune system and thus maintain immune system homeostasis and prevent pathological self-reactivity; these may include T cells that express the CD8 transmembrane glycoprotein (CD8-positive T cells), those that express CD4 and CD25 (CD4-positive, CD25-positive regulatory T cells or Tregs) and other T cell types that have suppressor function." [CL:0000815 "regulatory T cell", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "regulatory T lymphocyte morphology trait" EXACT [] synonym: "regulatory T-cell morphology trait" EXACT [] synonym: "suppressor T cell morphology trait" EXACT [] synonym: "suppressor T lymphocyte morphology trait" EXACT [] synonym: "suppressor T-cell morphology trait" EXACT [] synonym: "suppressor T-lymphocyte morphology trait" EXACT [] synonym: "Treg cell morphology trait" NARROW [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0004942 name: B cell selection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process dependent upon B cell antigen receptor signaling in response to self or foreign antigen through which B cells are selected for survival." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0002339 "B cell selection" is_a: VT:0002144 ! B cell development trait [Term] id: VT:0004943 name: B cell positive selection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to any process by which B cells are selected to survive based on signaling through the B cell antigen receptor." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0002346 "B cell positive selection" is_a: VT:0004942 ! B cell selection trait [Term] id: VT:0004944 name: B cell negative selection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process through which B cells which react strongly with self-antigens are eliminated, usually through anergy or deletion." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] xref: GO:0002352 "B cell negative selection" is_a: VT:0004942 ! B cell selection trait [Term] id: VT:0004946 name: regulatory T cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the specialized subpopulation of T cells that act to suppress activation of the immune system and thus maintain immune system homeostasis and prevent pathological self-reactivity; these may include T cells that express the CD8 transmembrane glycoprotein (CD8-positive T cells), those that express CD4 and CD25 (CD4-positive, CD25-positive regulatory T cells or Tregs) and other T cell types that have suppressor function." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002444 ! T cell physiology trait [Term] id: VT:0004951 name: spleen mass namespace: Trait.ontology def: "The amount of matter in the organ that functions to filter blood and to store red corpuscles and platelets." [RGD:MS] synonym: "spleen weight" RELATED [] synonym: "splenic weight" RELATED [] is_a: VT:0002224 ! spleen size trait [Term] id: VT:0004954 name: thymus mass namespace: Trait.ontology def: "The amount of matter in the primary lymphoid organ that is required for maturation of T cells." [RGD:MS] synonym: "thymus weight" RELATED [] is_a: VT:0002364 ! thymus size trait [Term] id: VT:0004972 name: regulatory T cell quantity namespace: Trait.ontology def: "The proportion or number of the specialized subpopulation of T cells that act to suppress activation of the immune system and thus maintain immune system homeostasis and prevent pathological self-reactivity." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "suppressor T cell number" EXACT [] synonym: "Treg cell number" EXACT [] is_a: VT:0004941 ! regulatory T cell morphology trait is_a: VT:0006387 ! T cell quantity [Term] id: VT:0004976 name: B-1 B cell quantity namespace: Trait.ontology def: "The proportion or number of the subset of B cells found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "B-1 B cell number" EXACT [] synonym: "B1 cell number" EXACT [] is_a: VT:0004940 ! B-1 B cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0004995 name: B cell clonal deletion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of removal by apoptosis of immature B lymphocytes that interact with self antigens during maturation." [MGI:acv "Alicia Valenzuela, Genetic Resources Curator"] is_a: VT:0004944 ! B cell negative selection trait is_a: VT:0005001 ! clonal deletion trait [Term] id: VT:0005000 name: immune tolerance trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process that directly activates any of the steps required for tolerance, a physiologic state in which the immune system does not react destructively against the components of an organism that harbors it or against antigens that are introduced to it." [GO:0002507 "tolerance induction", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001790 ! immune system physiology trait [Term] id: VT:0005001 name: clonal deletion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of removal of immature lymphocytes that interact with self antigens during maturation." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0005000 ! immune tolerance trait [Term] id: VT:0005002 name: T cell clonal deletion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of removal of immature T lymphocytes that interact with self antigens during maturation." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "T lymphocyte clonal deletion" EXACT [] synonym: "T-cell clonal deletion" EXACT [] is_a: VT:0004918 ! negative T cell selection trait is_a: VT:0005001 ! clonal deletion trait [Term] id: VT:0005004 name: lymphocyte anergy trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of establishing a state of functional inactivation of self-reactive lymphocytes." [GO:0002249 "lymphocyte anergy", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "clonal anergy" EXACT [] is_a: VT:0005000 ! immune tolerance trait [Term] id: VT:0005005 name: self tolerance trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the response to autologous (self) antigens." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0005000 ! immune tolerance trait [Term] id: VT:0005006 name: osteoblast physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in this bone-forming cell, which normally forms an osseous matrix in which it becomes enclosed as an osteocyte." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "osteoplast physiology trait" EXACT [] is_a: VT:0000070 ! bone physiology trait [Term] id: VT:0005007 name: bone mineral mass namespace: Trait.ontology def: "The amount of matter in the minerals (inorganic elements or compounds that have importance in body functions) in osseous tissue forming a part of the skeleton." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "bone mineral content" RELATED [] synonym: "bone mineral density" RELATED [] is_a: VT:1000111 ! bone mass [Term] id: VT:0005008 name: osteoblast development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of this bone-forming cell, which normally forms an osseous matrix in which it becomes enclosed as an osteocyte." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "osteoblast formation" EXACT [] synonym: "osteoplast formation" EXACT [] is_a: VT:0010005 ! bone development trait [Term] id: VT:0005010 name: CD8-positive T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the regulatory subset of T lymphocytes that are involved in MHC class I restricted interactions." [MeSH:D018414 "CD8-positive T-lymphocytes"] synonym: "CD8+ T cell morphology trait" EXACT [] synonym: "single positive T cell morphology trait" BROAD [] is_a: VT:0002435 ! effector T cell morphology trait [Term] id: VT:0005019 name: early pro-B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of cells in the B lymphocyte lineage that undergo D-J rearrangement of the immunoglobulin heavy chain." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: These cells express no surface Ig; cell surface markers for these cells are: CD45R, MHC class II, CD19, CD38, CD40. is_a: VT:0005432 ! pro-B cell morphology trait [Term] id: VT:0005020 name: late pro-B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells in the B lymphocyte lineage that undergo V-DJ rearrangement of the immunoglobulin heavy chain." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: These cells express no surface Ig; cell surface markers for these cells are: CD45R, MHC class II, CD19, CD38, CD40. is_a: VT:0005432 ! pro-B cell morphology trait [Term] id: VT:0005022 name: immature B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells of the B lymphocyte lineage that have undergone VDJ rearrangement of the heavy chain and V-J rearrangement of the light chain; these cells express IgM on the cell surface but have not yet been selected for self-reactivity." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] comment: These cells express IgM on their surface, in addition to CD45R, MHC class II, CD19, CD20, CD21, CD40. synonym: "immature B lymphocyte morphology trait" EXACT [] synonym: "immature B-cell morphology trait" EXACT [] is_a: VT:0002144 ! B cell development trait is_a: VT:0004939 ! B cell morphology trait [Term] id: VT:0005028 name: trophectoderm morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the mammalian embryo's means of nutrition." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:dlb "Donna L Burkart, Mouse Genome Informatics Curator", PMID:10500095] is_a: VT:0001712 ! placenta development trait is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0005029 name: amnion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the innermost layer of the extraembryonic membranes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:dlb "Donna L Burkart, Mouse Genome Informatics Curator"] is_a: VT:0002086 ! extraembryonic tissue morphology trait [Term] id: VT:0005031 name: trophoblast layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005031] is_a: VT:0001711 ! placenta morphology trait [Term] id: VT:0005032 name: ectoplacental cone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0001712 ! placenta development trait is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0005033 name: trophoblast giant cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells covering the blastocyst that erode the uterine mucosa and contribute to the formation of the placenta." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:dlb "Donna L Burkart, Mouse Genome Informatics Curator", PMID:10436056] is_a: VT:0005031 ! trophoblast layer morphology trait [Term] id: VT:0005034 name: anus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the lower opening of the digestive tract." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000462 ! gastrointestinal system morphology trait [Term] id: VT:0005045 name: thymus cortex area namespace: Trait.ontology def: "The two-dimensional extent of the outer part of a thymus lobule that surrounds the medulla and is composed of closely packed lymphocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002364 ! thymus size trait is_a: VT:0002371 ! thymus cortex morphology trait [Term] id: VT:0005061 name: eosinophil morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the immature or mature form of a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin; involved in clearance of parasitic infections and in allergic reactions." [CL:0000771 "eosinophil", ISBN:0721601464] synonym: "eosinocyte morphology trait" EXACT [] synonym: "eosinophilic leucocyte morphology trait" EXACT [] synonym: "eosinophilic leukocyte morphology trait" EXACT [] synonym: "polymorphonuclear leucocyte morphology trait" BROAD [] synonym: "polymorphonuclear leukocyte morphology trait" BROAD [] is_a: VT:0002441 ! granulocyte morphology trait [Term] id: VT:0005065 name: neutrophil morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [CL:0000775 "neutrophil", ISBN:0721601464] synonym: "neutrocyte morphology trait" EXACT [] synonym: "neutrophil leucocyte morphology trait" EXACT [] synonym: "neutrophil leukocyte morphology trait" EXACT [] synonym: "neutrophilic leucocyte morphology trait" EXACT [] synonym: "neutrophilic leukocyte morphology trait" EXACT [] synonym: "PMN morphology trait" BROAD [] synonym: "polymorphonuclear cell" EXACT [] synonym: "polymorphonuclear leucocyte morphology trait" BROAD [] synonym: "polymorphonuclear leukocyte morphology trait" BROAD [] synonym: "polymorphonuclear neutrophil morphology trait" BROAD [] synonym: "polynuclear neutrophilic leucocyte morphology trait" BROAD [] synonym: "polynuclear neutrophilic leukocyte morphology trait" BROAD [] is_a: VT:0002441 ! granulocyte morphology trait is_a: VT:0008251 ! phagocyte morphology trait [Term] id: VT:0005068 name: NK cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of non-T, non-B lymphocytes, having a granular morphology and which are important in innate immunity to viruses and other intracellular pathogens; in addition, these cells can kill certain tumor cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "natural killer cell morphology trait" EXACT [] is_a: VT:0002619 ! lymphocyte morphology trait [Term] id: VT:0005069 name: NK cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in non-T, non-B lymphocytes, having a granular morphology and which are important in innate immunity to viruses and other intracellular pathogens; in addition, these cells can kill certain tumor cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "natural killer cell physiology trait" EXACT [] is_a: VT:0003945 ! lymphocyte physiology trait [Term] id: VT:0005070 name: NK cell cytolysis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of natural killer cells to induce pathological breakdown of target cells by the destruction of their outer membrane." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "natural killer cell cytolysis" EXACT [] is_a: VT:0005069 ! NK cell physiology trait [Term] id: VT:0005073 name: granulocyte migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement of neutrophils, eosinophils, or basophils from point to point." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:4589319] synonym: "granulocyte chemotaxis" EXACT [] is_a: VT:0002462 ! granulocyte physiology trait is_a: VT:0003156 ! leukocyte migration trait [Term] id: VT:0005074 name: granulocyte bactericidal activity namespace: Trait.ontology def: "The degree of function or response of neutrophils, eosinophils, or basophils in the killing of bacteria." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:4589319] is_a: VT:0002462 ! granulocyte physiology trait [Term] id: VT:0005078 name: cytotoxic T cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the subset of CD8-positive T lymphocytes capable of directly killing appropriately targeted cells." [MeSH:D013602 "T-lymphocytes, cytotoxic"] synonym: "CTL physiology trait" EXACT [] synonym: "cytotoxic T lymphocyte physiology trait" EXACT [] synonym: "cytotoxic T-cell physiology trait" EXACT [] is_a: VT:0004392 ! CD8-positive T cell physiology trait [Term] id: VT:0005079 name: cytotoxic T cell cytolysis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of cytotoxic T cells to induce pathological breakdown of target cells by the destruction of their outer membrane." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "CTL cytolysis" EXACT [] synonym: "cytotoxic T lymphocyte cytolysis" EXACT [] synonym: "cytotoxic T-cell cytolysis" EXACT [] xref: ATOL:0000509 is_a: VT:0005078 ! cytotoxic T cell physiology trait [Term] id: VT:0005081 name: dermis stratum reticulare morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the inner layer of the dermis, consisting chiefly of dense fibrous tissue." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "stratum reticulare corii morphology trait" EXACT [] synonym: "stratum reticulare cutis morphology trait" EXACT [] synonym: "tunica propria corii morphology trait" EXACT [] is_a: VT:0001243 ! dermis morphology trait [Term] id: VT:0005082 name: epidermis stratum lucidum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the clear, translucent layer of the epidermis in the deepest level of the stratum corneum." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001240 ! epidermis stratum corneum morphology trait [Term] id: VT:0005083 name: biliary tract morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the gall bladder or its ducts." [MP:0005083] is_a: VT:0002138 ! hepatobiliary system morphology trait [Term] id: VT:0005084 name: gall bladder morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ which serves as a storage reservoir for bile." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005083 ! biliary tract morphology trait [Term] id: VT:0005085 name: gall bladder physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organ that stores and concentrates bile." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "gall bladder function" EXACT [] synonym: "gallbladder function" EXACT [] is_a: VT:0002139 ! hepatobiliary system physiology trait [Term] id: VT:0005086 name: bile amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the bitter, alkaline, brownish-yellow or greenish-yellow fluid that is secreted by the liver, stored in the gallbladder, and discharged into the duodenum and aids in the emulsification, digestion, and absorption of fats." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0005085 ! gall bladder physiology trait [Term] id: VT:0005089 name: double-negative T cell quantity namespace: Trait.ontology def: "The proportion or numbers of the subset of T cells found in the thymus that express neither CD4 nor CD8." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "CD4-CD8- T cell count" EXACT [] synonym: "CD4-CD8- T cell number" EXACT [] synonym: "double negative T cell number" EXACT [] synonym: "double-negative T cell count" EXACT [] synonym: "double-negative T cell numbers" EXACT [] synonym: "double-negative T-cell numbers" EXACT [] is_a: VT:0002407 ! double-negative T cell morphology trait is_a: VT:0006387 ! T cell quantity [Term] id: VT:0005092 name: double-positive T cell quantity namespace: Trait.ontology def: "The proportion or number of the subset of T cells found in the thymus that express both CD4 and CD8." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "CD4+CD8+ T cell count" EXACT [] synonym: "CD4+CD8+ T cell numbers" EXACT [] synonym: "double positive T cell number" EXACT [] synonym: "double-positive T cell count" EXACT [] synonym: "double-positive T cell numbers" EXACT [] synonym: "double-positive T-cell numbers" EXACT [] is_a: VT:0002408 ! double-positive T cell morphology trait is_a: VT:0006387 ! T cell quantity [Term] id: VT:0005096 name: erythroblast quantity namespace: Trait.ontology def: "The proportion or number of nucleated red blood cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0011176] synonym: "erythroblast count" EXACT [] is_a: VT:0010263 ! erythrocyte precursor morphology trait [Term] id: VT:0005098 name: choroid morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thin, highly vascularized membrane covering most of the posterior of the eye between the retina and the sclera." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005098] is_a: VT:0005196 ! posterior uvea morphology trait [Term] id: VT:0005099 name: ciliary body morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thickened portion of the vascular tunic, which lies between the choroid and the iris." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005099] is_a: VT:0005194 ! anterior uvea morphology trait [Term] id: VT:0005100 name: choroid pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the thin, highly vascularized membrane covering most of the posterior of the eye between the retina and the sclera." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005098 ! choroid morphology trait [Term] id: VT:0005102 name: iris pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005102] is_a: VT:0001322 ! iris morphology trait [Term] id: VT:0005104 name: tarsus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the bones of the lower/hind limb between the tibia and fibula and the metatarsus." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", VTO:CP "Cari Park, Iowa State University Curator"] comment: Note that humans only have seven tarsal bones, while rodents have eight. synonym: "tarsal bone morphology trait" EXACT [] synonym: "tarsals morphology trait" EXACT [] is_a: VT:0000556 ! hindlimb morphology trait is_a: VT:0002115 ! skeleton extremities morphology trait [Term] id: VT:0005105 name: auditory ossicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the small bones of the middle ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "middle ear bone morphology trait" EXACT [] synonym: "middle ear ossible morphology trait" EXACT [] is_a: VT:0000049 ! middle ear morphology trait is_a: VT:0002114 ! axial skeleton morphology trait [Term] id: VT:0005106 name: incus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the middle of the three auditory ossicles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005106, PMID:12606286] is_a: VT:0005105 ! auditory ossicle morphology trait [Term] id: VT:0005107 name: stapes morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the smallest and innermost of the three auditory ossicles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005107] is_a: VT:0005105 ! auditory ossicle morphology trait [Term] id: VT:0005108 name: ulna morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the medial and larger of the two bones of the forearm or lower forelimb; fused with the radius in some species." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010104 ! forelimb long bone morphology trait [Term] id: VT:0005109 name: talus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the tarsal bone that articulates with the tibia and fibula." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "ankle bone morphology trait" EXACT [] is_a: VT:0005104 ! tarsus morphology trait [Term] id: VT:0005110 name: talus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the tarsal bone that articulates with the tibia and fibula." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005109 ! talus morphology trait [Term] id: VT:0005112 name: anterior horn morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the ventral gray column of the spinal cord." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "ventral horn morphology trait" EXACT [] is_a: VT:0000955 ! spinal cord morphology trait [Term] id: VT:0005113 name: anterior horn cell quantity namespace: Trait.ontology def: "Any measurable or observable characteristic related to the proportion or number of cells in the ventral gray column of the spinal cord." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "anterior horn cell number" EXACT [] is_a: VT:0005112 ! anterior horn morphology trait [Term] id: VT:0005116 name: blood pituitary hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of any of the hormones secreted by the pituitary." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood pituitary hormone level" RELATED [] synonym: "circulating pituitary hormone level" RELATED [] synonym: "serum level of pituitary hormone" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005119 name: blood thyroid-stimulating hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the hormone that stimulates the growth and function of the thyroid gland." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "circulating thyroid-stimulating hormone level" RELATED [] synonym: "serum levels of thyroid-stimulating hormone" RELATED [] synonym: "serum levels of thyropic hormone" RELATED [] synonym: "serum levels of thyrotrophin" RELATED [] synonym: "serum levels of thyrotropin" RELATED [] synonym: "serum levels of TSH" RELATED [] is_a: VT:0005116 ! blood pituitary hormone amount [Term] id: VT:0005120 name: blood growth hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the hormone that promotes body growth, fat mobilization, and inhibition of glucose utilization." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood growth hormone level" RELATED [] synonym: "circulating growth hormone level" RELATED [] synonym: "serum levels of GH" RELATED [] synonym: "serum levels of growth hormone" RELATED [] synonym: "serum levels of pituitary growth hormone" RELATED [] synonym: "serum levels of somatotropic hormone" RELATED [] synonym: "serum levels of somatropin" RELATED [] is_a: VT:0005116 ! blood pituitary hormone amount [Term] id: VT:0005121 name: blood prolactin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the hormone that stimulates milk secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood prolactin level" RELATED [] synonym: "circulating prolactin level" RELATED [] synonym: "serum levels of galactopoietic hormone" RELATED [] synonym: "serum levels of lactation hormone" RELATED [] synonym: "serum levels of lactogenic hormone" RELATED [] synonym: "serum levels of lactotropin" RELATED [] synonym: "serum levels of mammotropic factor" RELATED [] synonym: "serum levels of mammotropic hormone" RELATED [] synonym: "serum levels of PRL" RELATED [] synonym: "serum levels of prolactin" RELATED [] is_a: VT:0003361 ! blood gonadotropin amount is_a: VT:0005116 ! blood pituitary hormone amount [Term] id: VT:0005144 name: circulating VLDL cholesterol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of very low density lipoprotein, which normally transports triglycerides from the intestine and liver to muscle and adipose tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "circulating VLDL cholesterol amount" EXACT [] synonym: "circulating VLDL cholesterol level" RELATED [] is_a: VT:0000180 ! blood cholesterol amount [Term] id: VT:0005149 name: gubernaculum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the genitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10391220] synonym: "gubernaculae morphology trait" EXACT [] is_a: VT:0002160 ! reproductive system morphology trait [Term] id: VT:0005153 name: B cell proliferation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which the B cell population undergoes expansion by cell division." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "B lymphocyte proliferation" EXACT [] synonym: "B-cell proliferation" EXACT [] is_a: VT:0008217 ! B cell activation trait [Term] id: VT:0005158 name: ovary cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the female reproductive gland containing the germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "ovary cell number" EXACT [] xref: ATOL:0000510 is_a: VT:0001126 ! ovary morphology trait [Term] id: VT:0005160 name: urine protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of macromolecules consisting of long chains of amino acids in peptide linkage in the urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:12091909] synonym: "urine protein level" EXACT [] xref: ATOL:0001510 is_a: VT:0001757 ! urine molecular composition trait is_a: VT:0010120 ! protein amount [Term] id: VT:0005168 name: female meiosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of nuclear division that results in ova with one half the normal chromosome number of the original cell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000511 xref: GO:0007143 "female meiosis" is_a: VT:0001930 ! meiosis trait is_a: VT:0001931 ! oogenesis trait [Term] id: VT:0005169 name: male meiosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of nuclear division that results in sperm with one half the normal chromosome number of the original cell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000512 xref: GO:0007140 "male meiosis" is_a: VT:0001156 ! spermatogenesis trait is_a: VT:0001930 ! meiosis trait [Term] id: VT:0005180 name: blood testosterone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this most potent androgen." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood testosterone level" RELATED [] synonym: "circulating testosterone level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005183 name: blood estradiol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this most potent estrogen." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood estradiol level" RELATED [] synonym: "circulating estradiol level" RELATED [] is_a: VT:0003369 ! blood estrogen amount [Term] id: VT:0005184 name: blood progesterone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this anti-estrogenic steroid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood progesterone level" RELATED [] synonym: "circulating progesterone level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005187 name: penis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organ of copulation and urination in the male." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000516 is_a: VT:0000516 ! urinary system morphology trait is_a: VT:0001145 ! male reproductive system morphology trait [Term] id: VT:0005189 name: perineum length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the space between the genitals and the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "anogenital distance" EXACT [] xref: ATOL:0000517 is_a: VT:0003315 ! perineum morphology trait [Term] id: VT:0005193 name: anterior eye segment morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the parts of the eye that lie in front of, or ventral to, the lens (inclusive)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005193] synonym: "anterior segment morphology trait" EXACT [] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0005194 name: anterior uvea morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the front, or ventral, portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005194] synonym: "Haller tunica vascula morphology trait" EXACT [] synonym: "tunica vasculosa bulbosa morphology trait" EXACT [] synonym: "uveal tract morphology trait" BROAD [] synonym: "vascular layer of the eyeball morphology trait" BROAD [] synonym: "vascular tunic of the eye morphology trait" BROAD [] synonym: "vasculosa oculi morphology trait" EXACT [] is_a: VT:0005193 ! anterior eye segment morphology trait is_a: VT:0005197 ! uvea morphology trait [Term] id: VT:0005195 name: posterior eye segment morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the parts of the eye that lie in back of, or dorsal to, the lens (but not inclusive)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005195] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0005196 name: posterior uvea morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the rear, or dorsal, portion of the vascular, pigmentary, or middle coat of the eye, includes the choroid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005196] synonym: "morphology trait of the vascular layer of the eyeball" BROAD [] synonym: "tunica vasculosa bulbi morphology trait" EXACT [] synonym: "tunica vasculosa oculi morphology trait" EXACT [] synonym: "uveal tract morphology trait" BROAD [] synonym: "vascular tunic of the eye morphology trait" BROAD [] is_a: VT:0002864 ! ocular fundus morphology trait is_a: VT:0005197 ! uvea morphology trait [Term] id: VT:0005197 name: uvea morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the pigmented vascular coat of the eyeball, consisting of the iris, ciliary body, and choroid." [MP:0005197] synonym: "morphology trait of the vascular layer of the eyeball" EXACT [] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0005198 name: aqueous drainage system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the structures associated with drainage of the aqueous humor from the eye, these include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins." [MP:0005198] is_a: VT:0005194 ! anterior uvea morphology trait [Term] id: VT:0005201 name: retinal pigment epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the epithelial layer of the retina composed of cells containing pigment granules." [MP:0005201] is_a: VT:0003727 ! retinal layer morphology trait [Term] id: VT:0005203 name: trabecular meshwork morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates." [MP:0005203] is_a: VT:0004221 ! iridocorneal angle morphology trait [Term] id: VT:0005204 name: canal of Schlemm morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005204] synonym: "circular sinus morphology trait" EXACT [] synonym: "Fontana canal morphology trait" EXACT [] synonym: "Lauth canal morphology trait" EXACT [] synonym: "Schlemm's canal morphology trait" EXACT [] synonym: "scleral venous sinus morphology trait" EXACT [] synonym: "sinus circularis morphology trait" EXACT [] synonym: "sinus venosus sclerae morphology trait" EXACT [] synonym: "venous sinus of sclera morphology trait" EXACT [] is_a: VT:0004221 ! iridocorneal angle morphology trait [Term] id: VT:0005205 name: eye anterior chamber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the space in the eye, filled with aqueous humor, and bounded anteriorly by the cornea and a small portion of the sclera and posteriorly by a small portion of the ciliary body, the iris, and part of the crystalline lens." [MP:0005205] is_a: VT:0005193 ! anterior eye segment morphology trait [Term] id: VT:0005206 name: aqueous humor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the clear, watery fluid that fills the anterior and posterior chambers of the eye." [MP:0005206] is_a: VT:0005205 ! eye anterior chamber morphology trait [Term] id: VT:0005207 name: aqueous vein morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005207] is_a: VT:0004221 ! iridocorneal angle morphology trait [Term] id: VT:0005208 name: iris stroma morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the lamellated connective tissue of the iris." [MP:0005208] is_a: VT:0001322 ! iris morphology trait [Term] id: VT:0005209 name: gastric mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the surface epithelium of the stomach, which is made up of several different cell types." [MP:0010792] synonym: "stomach mucosa morphology" EXACT [] is_a: VT:0000473 ! stomach glandular epithelium morphology trait [Term] id: VT:0005211 name: gastric mucosa thickness namespace: Trait.ontology def: "The distance between the surfaces of the epithelial layer of the stomach." [RGD:MS] is_a: VT:0005209 ! gastric mucosa morphology trait [Term] id: VT:0005215 name: islet of Langerhans morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cellular masses consisting of several to several hundred cells in the interstitial tissue of the pancreas; they are composed of five different cell types that make up the endocrine portion of the pancreas." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:4000011 ! endocrine pancreas morphology trait [Term] id: VT:0005216 name: pancreatic alpha cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells of the pancreas that secrete glucagon." [MP:0005216] is_a: VT:0005215 ! islet of Langerhans morphology trait [Term] id: VT:0005217 name: pancreatic beta cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells of the pancreas that secrete insulin." [MP:0005217] is_a: VT:0005215 ! islet of Langerhans morphology trait [Term] id: VT:0005218 name: pancreatic delta cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells found in the pancreas and gastrointestinal tract that secrete somatostatin." [MP:0005218] is_a: VT:0005215 ! islet of Langerhans morphology trait [Term] id: VT:0005220 name: exocrine pancreas morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the acinar gland portion of the pancreas that secretes digestive enzymes." [MP:0005220] is_a: VT:0001944 ! pancreas morphology trait [Term] id: VT:0005221 name: rostral-caudal axis patterning trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the establishment, maintenance, and elaboration of a pattern along the axis that runs from the head to the tail of the body." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", MGI:GO "Definition from the Gene Ontology"] synonym: "head-tail axis patterning" EXACT [] is_a: VT:0002084 ! developmental patterning trait [Term] id: VT:0005222 name: somite size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of any of the paired, metamerically arranged cell masses formed in the embryonic paraxial mesoderm." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:11641270] is_a: VT:0010122 ! somite morphology trait [Term] id: VT:0005223 name: rostral-caudal axis somite development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the somites along the axis that runs from the head region to the tail region of the body." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:11641270] synonym: "anterior-posterior polarity of the somites" EXACT [] is_a: VT:0001688 ! somite development trait is_a: VT:0005221 ! rostral-caudal axis patterning trait [Term] id: VT:0005224 name: left-right axis somite development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the somites along the axis that runs from the left to the right side of the body." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "left-right axis symmetry of the somites" EXACT [] is_a: VT:0001688 ! somite development trait is_a: VT:0001706 ! left-right axis patterning trait [Term] id: VT:0005225 name: vertebra development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the bony segments of the spinal column during their formation and differentiation." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0010102 ! vertebral column development trait [Term] id: VT:0005226 name: vertebral arch development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the posterior projection from the body of a vertebra that encloses the vertebral foramen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005225 ! vertebra development trait [Term] id: VT:0005227 name: vertebral body development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the main portion of the vertebra anterior to the vertebral canal, and distinct from the vertebral arch, during its formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005225 ! vertebra development trait [Term] id: VT:0005228 name: vertebral body/neural arch fusion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the joining of the main portion of the vertebra anterior to the vertebral canal and the posterior element of a developing vertebra, which will become the vertebral arch and the posterolateral portion of the vertebral body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "fusion of vertebral bodies/neural arches" EXACT [] is_a: VT:0005225 ! vertebra development trait [Term] id: VT:0005229 name: intervertebral disk development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cartilaginous and gelatinous structures found between the bodies of adjacent vertebrae." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "intervertebral cartilage development trait" EXACT [] is_a: VT:0000164 ! cartilage development trait is_a: VT:0010102 ! vertebral column development trait [Term] id: VT:0005231 name: brachial lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "humeral axillary lymph node morphology trait" EXACT [] is_a: VT:0002340 ! axillary lymph node morphology trait [Term] id: VT:0005232 name: mesenteric lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0009625 ! abdominal lymph node morphology trait [Term] id: VT:0005235 name: olfactory lobe morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the composite substructure of the telencephalon that is identified with olfaction; in humans this includes the olfactory tract, the anterior olfactory nucleus, the olfactory tubercle, the medial olfactory stria, the lateral olfactory stria, parts of the amygdala and the prepyriform area." [http://braininfo.rprc.washington.edu/Default.aspx "BrainInfo", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "rhinencephalon morphology trait" RELATED [] is_a: VT:0000787 ! telencephalon morphology trait [Term] id: VT:0005236 name: olfactory nerve morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the first cranial nerve, which conveys the sense of smell." [MP:0005236] synonym: "CN-I" EXACT [] is_a: VT:0001056 ! cranial nerve morphology trait [Term] id: VT:0005237 name: olfactory tract morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nerve-like, white band composed primarily of nerve fibers originating from the mitral cells and tufted cells of the olfactory bulb, but also containing the scattered cells of the anterior olfactory nucleus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:8698235] is_a: VT:0005267 ! olfactory cortex morphology trait [Term] id: VT:0005239 name: Bruch membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the transparent, nearly structureless inner layer of the choroid in contact with the pigmented layer of the retina." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005239] synonym: "Bruch's membrane morphology trait" EXACT [] synonym: "Henle membrane morphology trait" EXACT [] synonym: "lamina basalis choroidae morphology trait" EXACT [] synonym: "lamina vitrea morphology trait" EXACT [] synonym: "morphology trait of the basal lamina of the choroid" EXACT [] synonym: "morphology trait of the basal layer of the choroid" EXACT [] synonym: "vitreous lamella morphology trait" EXACT [] is_a: VT:0005098 ! choroid morphology trait [Term] id: VT:0005240 name: amacrine cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of one of the three types of interneurons found in the inner nuclear layer of the mature retina; they integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer." [MP:0005240] synonym: "amacrine neuron morphology trait" EXACT [] is_a: VT:0000965 ! sensory neuron morphology trait is_a: VT:0001325 ! retina morphology trait is_a: VT:0006004 ! interneuron morphology trait [Term] id: VT:0005241 name: retinal ganglion layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the innermost nuclear layer of the retina, which projects axons through the optic nerve to the brain." [MP:0005241] synonym: "retinal ganglion cell morphology trait" NARROW [] is_a: VT:0006069 ! retinal neuronal layer morphology trait [Term] id: VT:0005246 name: orbit morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bony cavity that contains the eyeball or of any of the parts of the bones which form the cavity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0010030] is_a: VT:0000438 ! skull morphology trait is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0005247 name: extraocular muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the striated muscles that move the eye and include: superior rectus, inferior rectus, medial rectus, lateral rectus, superior oblique, inferior oblique, retractor bulbi, levator palpebrae superioris." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005247] is_a: VT:0000759 ! skeletal muscle morphology trait is_a: VT:0003686 ! eye muscle morphology trait [Term] id: VT:0005248 name: Harderian gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the gland located behind the eyeball in some species that excretes fluid that facilitates movement of the nictitating membrane." [MP:0005248] is_a: VT:0000647 ! sebaceous gland morphology trait [Term] id: VT:0005249 name: palatine bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of either of two irregularly shaped bones that form the back of the hard palate and help to form the nasal cavity and the floor of the orbits." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005249] synonym: "hard palate morphology trait" BROAD [] is_a: VT:0005246 ! orbit morphology trait is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0005250 name: Sertoli cell quantity namespace: Trait.ontology def: "The proportion or number of cells of the seminiferous tubules that create the blood-testes barrier and enable spermatogenesis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Sertoli cell number" EXACT [] xref: ATOL:0000518 is_a: VT:0002784 ! Sertoli cell morphology trait [Term] id: VT:0005252 name: meibomian gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of sebaceous glands embedded in the tarsal plate of each eyelid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005252] synonym: "tarsal gland morphology trait" EXACT [] is_a: VT:0000647 ! sebaceous gland morphology trait is_a: VT:0001340 ! eyelid morphology trait [Term] id: VT:0005253 name: eye physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organ of vision and its supporting structures." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0005391 ! vision system trait is_a: VT:0015027 ! craniofacial physiology trait [Term] id: VT:0005254 name: visual axis alignment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the alignment of the visual axes of the eyes." [MP:0005254] is_a: VT:0002092 ! eye morphology trait [Term] id: VT:0005257 name: intraocular pressure namespace: Trait.ontology def: "The amount of force per unit area exerted by the intraocular fluid within the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005253 ! eye physiology trait [Term] id: VT:0005265 name: blood urea nitrogen amount namespace: Trait.ontology def: "The proportion, quantity, or volume of nitrogen, in the form of urea, in whole blood, serum, or plasma; commonly used to measure renal function." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood urea nitrogen level" RELATED [] synonym: "BUN level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0005267 name: olfactory cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the piriform cortex, part of the olfactory tract, which receives its major afferents from the olfactory bulb, and is primarily responsible for the identification of odors." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005235 ! olfactory lobe morphology trait [Term] id: VT:0005269 name: occipital bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bone at the lower, posterior part of the skull." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005269] is_a: VT:0000076 ! calvaria morphology trait is_a: VT:0005273 ! cranial base morphology trait [Term] id: VT:0005270 name: zygomatic bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the quadrilateral bone that forms the prominence of the cheek, the lateral wall and margin of the orbit, and the anterior two thirds of the zygomatic arch." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005270] synonym: " jugal bone morphology trait" EXACT [] synonym: "cheek bone morphology trait" EXACT [] synonym: "malar bone morphology trait" EXACT [] synonym: "yoke bone morphology trait" EXACT [] is_a: VT:0005246 ! orbit morphology trait is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0005271 name: lacrimal bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the irregularly thin plate that forms part of the medial wall of the orbit behind the frontal process of the maxilla." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005271] is_a: VT:0005246 ! orbit morphology trait is_a: VT:0005274 ! viscerocranium morphology trait [Term] id: VT:0005272 name: temporal bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the large, irregular bone located at the base and side of the skull; consists of three parts which are distinct at birth: squamous, tympanic, and petrous." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005272] is_a: VT:0000076 ! calvaria morphology trait [Term] id: VT:0005273 name: cranial base morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bones that form the floor of the cranial cavity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0010029] synonym: "basicranium morphology trait" EXACT [] synonym: "basis cranii morphology trait" EXACT [] synonym: "morphology trait of the base of skull" EXACT [] is_a: VT:0000074 ! neurocranium morphology trait [Term] id: VT:0005274 name: viscerocranium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the part of the skull that comprises the facial bones." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005274] synonym: "facial bone morphology trait" EXACT [] is_a: VT:0000438 ! skull morphology trait [Term] id: VT:0005275 name: skin tensile strength namespace: Trait.ontology def: "The ability of the membranous protective covering of the body to withstand applied tension without tearing." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005501 ! skin physiology trait [Term] id: VT:0005277 name: brainstem morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the midbrain, pons, or medulla." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:12657691] is_a: VT:0002152 ! brain morphology trait [Term] id: VT:0005278 name: cholesterol homeostasis trait namespace: Trait.ontology def: "Any measurable characteristic related to the state of equilibrium in the body of these most abundant steroids in animal tissues, and precursors to steroid hormones and bile salts; also components of plasma membranes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: GO:0042632 "cholesterol homeostasis" is_a: VT:0015079 ! sterol homeostasis trait [Term] id: VT:0005280 name: adipose fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons present in fat-storing cells/tissue; they are saturated and unsaturated." [MeSH:D005227 "fatty acids"] synonym: "adipose fatty acid content" EXACT [] is_a: VT:0010006 ! adipose molecular composition trait is_a: VT:0010046 ! fatty acid amount [Term] id: VT:0005285 name: adipose unsaturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons present in fat-storing cells/tissue; the carbon chain has one or more double or triple carbon-carbon bonds." [MeSH:D005231 "fatty acids, unsaturated"] synonym: "adipose unsaturated fatty acid content" EXACT [] is_a: VT:0005280 ! adipose fatty acid amount [Term] id: VT:0005286 name: adipose saturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons present in fat-storing cells/tissue; the carbon chain contains only single carbon-carbon bonds." [MeSH:D005227 "fatty acids"] synonym: "adipose saturated fatty acid content" EXACT [] is_a: VT:0005280 ! adipose fatty acid amount [Term] id: VT:0005294 name: heart ventricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the lower chamber(s) of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac ventricle morphology trait" RELATED [] synonym: "cardiac ventricular morphology trait" RELATED [] synonym: "heart ventricular morphology trait" EXACT [] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0005296 name: humerus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010104 ! forelimb long bone morphology trait [Term] id: VT:0005298 name: clavicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one or both of the doubly curved long bones that form part of the shoulder girdle and articulate with the sternum and the scapula." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "collar bone morphology trait" EXACT [] is_a: VT:0010089 ! shoulder girdle morphology trait [Term] id: VT:0005299 name: eye posterior chamber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the ring-like space, filled with aqueous humor, between the iris/pupil anteriorly and the lens and ciliary body posteriorly." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005299] is_a: VT:0005193 ! anterior eye segment morphology trait [Term] id: VT:0005300 name: corneal stroma morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the lamellated connective tissue of the cornea." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005300] is_a: VT:0001312 ! cornea morphology trait [Term] id: VT:0005301 name: corneal endothelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the single layer of large flattened cells that cover the surface of the cornea." [MP:0005301] is_a: VT:0001312 ! cornea morphology trait [Term] id: VT:0005303 name: urinary bladder physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the distensible musculomembranous bag for holding urine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "urinary bladder dysfunction" EXACT [] is_a: VT:0005502 ! urinary system physiology trait [Term] id: VT:0005305 name: coagulating gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the anterior lobe of the prostate." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001163 ! coagulating gland morphology trait [Term] id: VT:0005306 name: phalanx morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the long bones of the digits." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "phalanges morphology trait" EXACT [] is_a: VT:0002110 ! digit morphology trait is_a: VT:0003723 ! long bone morphology trait [Term] id: VT:0005308 name: blood ammonia amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this colorless alkaline gas, formed in the body during organic decomposition." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005308] synonym: "blood ammonia level" RELATED [] synonym: "circulating ammonia level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0005310 name: salivary gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in any of the glands in the mouth that secrete saliva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "salivary gland function" EXACT [] is_a: VT:0000066 ! pancreas/salivary gland physiology trait is_a: VT:0002164 ! gland physiology trait [Term] id: VT:0005311 name: blood amino acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the organic compounds, which, when polymerized, form proteins." [ISBN:0716730510 "Biochemistry, 5th Edition", PMID:12052859] synonym: "blood amino acid content" RELATED [] synonym: "blood amino acid level" RELATED [] synonym: "circulating amino acid level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0005316 name: tactition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "tactile sense" RELATED [] synonym: "touch perception" RELATED [] xref: GO:0050975 "sensory perception of touch" is_a: VT:0015099 ! touch perception trait [Term] id: VT:0005325 name: glomerulus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the capillary loops at the beginning of each nepric tubule in the kidney." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "glomerular capillaries morphology trait" EXACT [] is_a: VT:0002827 ! kidney corpuscle morphology trait [Term] id: VT:0005326 name: podocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the epithelial cells of the glomerulus, attached to the outer surface of the glomerular capillary basement membrane by cytoplasmic foot processes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:10514378] synonym: "glomerular epithelial cell morphology trait" EXACT [] is_a: VT:0005325 ! glomerulus morphology trait [Term] id: VT:0005327 name: mesangial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the phagocytic cells in the capillary tuft of the renal glomerulus, interposed between endothelial cells and the basement membrane in the central or stalk region of the tuft." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:10514378] synonym: "deep cell morphology trait" EXACT [] synonym: "intercapillary cell morphology trait" EXACT [] is_a: VT:0005325 ! glomerulus morphology trait [Term] id: VT:0005328 name: blood creatinine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this product of creatine catabolism." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: abnormal levels indicative of renal dysfunction synonym: "blood creatinine level" RELATED [] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0005329 name: heart muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the striated, involuntary muscle comprising the myocardium." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac muscle morphology trait" EXACT [] synonym: "myocardial morphology trait" EXACT [] synonym: "myocardium morphology trait" EXACT [] xref: MP:0005329 is_a: VT:0000266 ! heart morphology trait is_a: VT:0002108 ! muscular system morphology trait [Term] id: VT:0005334 name: fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue." [MP:0005334] synonym: "fat body morphology trait" EXACT [] is_a: VT:0000003 ! adipose morphology trait [Term] id: VT:0005335 name: gonadal fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335] synonym: "gonadal fat depot morphology trait" EXACT [] synonym: "perigonadal fat pad morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait [Term] id: VT:0005336 name: inguinal fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue found in the groin." [MP:0005336] synonym: "inguinal fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait [Term] id: VT:0005337 name: retroperitoneal fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue found on the dorsal/posterior side of the serous membrane lining the abdominal cavity and covering most of the viscera." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005337] synonym: "retroperitoneal fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait [Term] id: VT:0005342 name: lipid absorption trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the body to take in fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water)." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_a: VT:0001666 ! nutrient absorption trait is_a: VT:0002118 ! lipid homeostasis trait [Term] id: VT:0005345 name: blood corticosterone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this adrenocortical steroid; induces glycogen deposition and regulates sodium conservation and potassium secretion." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood corticosterone level" RELATED [] synonym: "circulating corticosterone level" RELATED [] synonym: "serum level of corticosterone" RELATED [] is_a: VT:0003366 ! blood glucocorticoid amount [Term] id: VT:0005346 name: blood aldosterone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this hormone, secreted by the adrenal cortex; regulates sodium conservation and potassium secretion in the distal renal tubule." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood aldosterone level" RELATED [] synonym: "circulating aldosterone level" RELATED [] synonym: "serum aldosterone level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005353 name: patella morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large sesamoid bone that articulates with the femur and, in some species, covers the anterior surface of the knee." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:9590288] synonym: "kneecap morphology trait" EXACT [] is_a: VT:0002109 ! limb morphology trait is_a: VT:0002115 ! skeleton extremities morphology trait [Term] id: VT:0005354 name: ilium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the broad, flaring portion of the hip bone, which fuses with the ischium and the pubis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:9590288] synonym: "iliac bone morphology trait" EXACT [] is_a: VT:0010090 ! pelvic girdle morphology trait [Term] id: VT:0005355 name: thyroid gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the endocrine gland located in the front and to the sides of the upper part of the trachea, and which secretes thyroid hormone and calcitonin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_a: VT:0000681 ! thyroid gland morphology trait [Term] id: VT:0005358 name: incisor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the long pointed teeth; most anterior and prominent in the jaw." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator", PMID:12915449] is_a: VT:0002100 ! tooth morphology trait [Term] id: VT:0005359 name: incisor growth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the increase in size of the long pointed teeth, most anterior and prominent in the jaw." [MP:0005359] is_a: VT:0000116 ! tooth development trait [Term] id: VT:0005361 name: pituitary gland size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the pituitary gland, the compound gland suspended from the base of the hypothalamus, which secretes somatotropins, prolactin, TSH (thyroid-stimulating hormone), gonadotropins, adrenal corticotropin." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0000633 ! pituitary gland morphology trait [Term] id: VT:0005362 name: Langerhans cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the stellate dendritic cell of myeloid origin, that appears clear on light microscopy and has a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus." [CL:0000453, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "Langerhans cell function" EXACT [] is_a: VT:0002376 ! dendritic cell physiology trait [Term] id: VT:0005369 name: muscular system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0015074 ! organ system trait [Term] id: VT:0005372 name: life span trait namespace: Trait.ontology def: "Any measurable or observable characteristic pertaining to the period of time an organism survives or is expected to survive or maintains or is expected to maintain a specific function." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "lifespan" EXACT [] synonym: "survival" EXACT [] synonym: "viability" EXACT [] synonym: "viable" EXACT [] is_a: VT:0010454 ! organism trait [Term] id: VT:0005380 name: embryonic development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of an embryo during the progression from its formation until the end of its embryonic life stage." [MGI:GO "Definition from the Gene Ontology"] synonym: "embryogenesis trait" EXACT [] xref: GO:0009790 "embryonic development" is_a: VT:0000069 ! embryo trait [Term] id: VT:0005382 name: head trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0100003 ! organism subdivision trait [Term] id: VT:0005388 name: respiratory system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the system responsible for the exchange of oxygen and carbon dioxide with the environment." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015074 ! organ system trait [Term] id: VT:0005389 name: reproductive system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the organs associated with producing offspring." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "reproduction" EXACT [] is_a: VT:0015074 ! organ system trait [Term] id: VT:0005391 name: vision system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to see." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015095 ! sensory trait [Term] id: VT:0005392 name: nociception system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to sense pain, or to the morphology of the structures involved in any of these events." [MP:0001968] is_a: VT:0015095 ! sensory trait [Term] id: VT:0005394 name: olfactory system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal, or to the morphology of the structures involved in any of these events." [MGI:GO "Definition from the Gene Ontology"] comment: Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. is_a: VT:0015095 ! sensory trait [Term] id: VT:0005402 name: action potential trait namespace: Trait.ontology def: "Any measurable characteristic related to the change in electrical potential of a neuron or muscle fiber when stimulated above its threshold potential." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", RGD:DHM "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0002272 ! nervous system electrophysiology trait [Term] id: VT:0005403 name: nerve conduction trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the act of transmitting electricity along a single nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002272 ! nervous system electrophysiology trait [Term] id: VT:0005404 name: axon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the single process of a nerve cell that normally conducts impulses away from the cell body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "axonal morphology trait" EXACT [] synonym: "nerve fiber morphology trait" RELATED [] is_a: VT:0015108 ! neurite morphology trait [Term] id: VT:0005406 name: heart size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the cardiac muscle or any of its component structures." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac size trait" RELATED [] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0005410 name: fertilization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process beginning with penetration of the secondary oocyte by the sperm and completed by fusion of the male and female pronuclei." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005410] xref: ATOL:0000525 is_a: VT:0001919 ! reproductive system physiology trait [Term] id: VT:0005416 name: blood protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of any of the macromolecules consisting of long chains of amino acids in peptide linkage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood protein level" RELATED [] synonym: "circulating protein level" RELATED [] is_a: VT:0010120 ! protein amount is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0005418 name: blood hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of any of the chemical substances that have specific regulatory effects on the activity of a certain organ or organs; originally applied to substances secreted by various endocrine glands and transported in the bloodstream to the target organs, it is sometimes extended to include substances that are not produced by the endocrine glands but that have similar effects." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood hormone content" RELATED [] synonym: "circulating hormone level" RELATED [] xref: ATOL:0000527 is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0005423 name: somatic nervous system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the cranial and spinal nerves or their ganglia or the peripheral sensory receptors." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0005424 name: body movement coordination trait namespace: Trait.ontology def: "any measurable or observable characteristic related to skillful and effective interaction of motions of the whole body or a portion of the body" [MGI:smb] synonym: "coordination of voluntary muscular movement" NARROW [] is_a: VT:0001516 ! motor coordination/balance trait [Term] id: VT:0005425 name: macrophage quantity namespace: Trait.ontology def: "The proportion or numbers of the large mononuclear phagocytes which differentiate from monocytes, are typically resident in a particular tissue, and are capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "macrophage cell number" EXACT [] synonym: "macrophage count" EXACT [] is_a: VT:0000217 ! leukocyte quantity is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0005431 name: oocyte quantity namespace: Trait.ontology def: "The proportion or number of germ cells in the female." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] synonym: "female germ cell number" EXACT [] synonym: "oocyte number" EXACT [] is_a: VT:0001125 ! oocyte morphology trait is_a: VT:0002209 ! germ cell quanitity [Term] id: VT:0005432 name: pro-B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the progenitor cells of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but are not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [CL:0000826, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "B cell progenitor morphology trait" EXACT [] synonym: "progenitor B cell morphology trait" EXACT [] is_a: VT:0002144 ! B cell development trait [Term] id: VT:0005437 name: blood glycogen amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the polysaccharide which is the storage form for glucose in the liver and muscles; readily converted to glucose when blood glucose level decreases." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0015078 ! blood homeostasis trait [Term] id: VT:0005442 name: cerebral cortex pyramidal cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the projection neurons in the pyramidal cell layer of the cerebral cortex." [MP:0009969] synonym: "cerebral cortex projection neuron morphology trait" EXACT [] synonym: "cerebral cortex pyramidal neuron morphology trait" EXACT [] is_a: VT:0000788 ! cerebral cortex morphology trait is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0005443 name: ethanol metabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability to metabolize the clear, colorless liquid that is the primary ingredient in alcoholic beverages." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:10358022] xref: GO:0006067 "ethanol metabolic process" is_a: VT:0015089 ! alcohol metabolism trait [Term] id: VT:0005444 name: retinol metabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A; retinol plays an essential role in metabolic functioning of the retina, the growth of and differentiation of epithelial tissue, the growth of bone, reproduction, and the immune response." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", PMID:10358022] xref: GO:0042572 "retinol metabolic process" is_a: VT:0015087 ! vitamin metabolism trait [Term] id: VT:0005445 name: neurotransmitter release trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the secretion of endogenous signaling molecules normally secreted by neurons that alter the behavior of neurons or effector cells." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0002204 ! neurotransmitter amount [Term] id: VT:0005446 name: synaptic epinephrine release trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the secretion across synapses of the active sympathomimetic hormone that stimulates both the alpha- and beta- adrenergic systems, causes systemic vasoconstriction and gastrointestinal relaxation, stimulates the heart, and dilates bronchi and cerebral vessels." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "synaptic adrenaline release" EXACT [] is_a: VT:0005445 ! neurotransmitter release trait [Term] id: VT:0005447 name: synaptic norepinephrine release trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the secretion across synapses of this widespread central and autonomic neurotransmitter, the principal transmitter of most postganglionic sympathetic fibers and of the diffuse projection system in the brain arising from the locus ceruleus." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0005445 ! neurotransmitter release trait [Term] id: VT:0005448 name: energy balance trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the equilibrium between intake and expenditure of calories." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002121 ! metabolism trait [Term] id: VT:0005450 name: energy expenditure trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the utilization of calories." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "energy metabolism" EXACT [] is_a: VT:0005448 ! energy balance trait [Term] id: VT:0005452 name: adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of fat-storing cells/tissue." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MP:0005452] synonym: "adipose tissue amount" EXACT [] synonym: "adipose weight" RELATED [] synonym: "body fat amount" EXACT [] is_a: VT:0000003 ! adipose morphology trait [Term] id: VT:0005460 name: leukopoiesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of generating white blood cells (leukocytes) from the pluripotent hematopoietic stem cells of the bone marrow; two significant pathways generate various types of leukocytes: myelopoiesis, in which leukocytes in the blood are derived from myeloid stem cells, and lymphopoiesis, in which leukocytes of the lymphatic system (lymphocytes) are generated from lymphoid stem cells." [MeSH:D019891 "Leukopoiesis"] synonym: "immune cell development trait" EXACT [] synonym: "leukocyte differentiation" EXACT [] is_a: VT:0002123 ! hematopoiesis trait is_a: VT:0010179 ! immune system development trait [Term] id: VT:0005461 name: dendritic cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation." [ISBN:0781735149, MP:0005461] comment: Do not confuse with follicular dendritic cell morphology trait (VT:0008196). is_a: VT:0008195 ! antigen presenting cell morphology trait is_a: VT:0008246 ! leukocyte morphology trait [Term] id: VT:0005462 name: mast cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of a cell that is found in almost all tissues, containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation." [CL:0000097 "mast cell"] synonym: "mast cell differentiation" EXACT [] is_a: VT:0001601 ! myelopoiesis trait [Term] id: VT:0005463 name: CD4-positive T cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "CD4+ T cell function" EXACT [] synonym: "CD4+ T cell physiology trait" EXACT [] synonym: "single positive T cell physiology trait" BROAD [] is_a: VT:0002444 ! T cell physiology trait [Term] id: VT:0005464 name: platelet physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the disc-like fragments of megakaryocytes that are found in the blood and function in clotting." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "platelet function" EXACT [] is_a: VT:0010249 ! blood cell physiology trait [Term] id: VT:0005465 name: T-helper 1 physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the type of T-helper cell whose cytokine production favors cellular immune responses and delayed type hypersensitivity." [CL:0000545, ISBN:0781735149] synonym: "helper T cell type 1 function" EXACT [] synonym: "helper T lymphocyte type 1 function" EXACT [] synonym: "helper T-cell type 1 function" EXACT [] synonym: "helper T-lymphocyte type 1 function" EXACT [] synonym: "T helper 1 function" EXACT [] synonym: "TH1 cell function" EXACT [] xref: ATOL:0000529 is_a: VT:0005463 ! CD4-positive T cell physiology trait [Term] id: VT:0005466 name: T-helper 2 physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the type of T-helper cell whose cytokine production promotes defense against extracellular parasites and humoral immune responses typical of allergy." [CL:0000546, ISBN:0781735149] synonym: "helper T cell type 2 function" EXACT [] synonym: "helper T lymphocyte type 2 function" EXACT [] synonym: "helper T-cell type 2 function" EXACT [] synonym: "helper T-lymphocyte type 2 function" EXACT [] synonym: "T helper 2 function" EXACT [] synonym: "T helper 2 physiology trait" EXACT [] synonym: "TH2 cell function" EXACT [] xref: ATOL:0000382 is_a: VT:0005463 ! CD4-positive T cell physiology trait [Term] id: VT:0005475 name: blood thyroxine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the major hormone derived from the thyroid gland; it normally affects cellular metabolism." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood thyroxine level" RELATED [] synonym: "circulating level of T4" RELATED [] synonym: "circulating level of thyroxin" RELATED [] synonym: "circulating thyroxine level" RELATED [] xref: ATOL:0000531 is_a: VT:0003351 ! blood thyroid hormone amount [Term] id: VT:0005476 name: blood triiodothyronine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this hormone synthesized and secreted by the thyroid; normally, this is the main thyroid hormone used by the tissues." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "blood triiodothyronine level" RELATED [] synonym: "circulating level of T3" RELATED [] synonym: "circulating triiodothyronine level" RELATED [] xref: ATOL:0000532 is_a: VT:0003351 ! blood thyroid hormone amount [Term] id: VT:0005488 name: bronchial epithelial cell quantity namespace: Trait.ontology def: "The proportion or number of cells lining the inner surfaces of the bronchi." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "bronchial epithelial cell number" EXACT [] is_a: VT:0002264 ! bronchus morphology trait [Term] id: VT:0005490 name: Clara cell quantity namespace: Trait.ontology def: "The proportion or number of the rounded, club-shaped, nonciliated cells found between ciliated cells in bronchiolar epithelium." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Clara cell number" EXACT [] is_a: VT:0002264 ! bronchus morphology trait [Term] id: VT:0005493 name: stomach epithelial cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the epithelial layer of the stomach." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "stomach epithelial cell number" EXACT [] is_a: VT:0000471 ! stomach epithelium morphology trait [Term] id: VT:0005495 name: macrophage recruitment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the accumulation of macrophages in a specific location in response to a wide variety of substances released at the sites of inflammatory reactions." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002451 ! macrophage physiology trait [Term] id: VT:0005499 name: olfactory system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organs involved in smell." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0005394 ! olfactory system trait [Term] id: VT:0005500 name: gustatory system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the components of the organs involved in taste." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015065 ! gustatory system trait [Term] id: VT:0005501 name: skin physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0100019 ! integumentary system physiology trait [Term] id: VT:0005502 name: urinary system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the organs involved in the production or excretion of urine." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:1000777 ! urinary system trait [Term] id: VT:0005503 name: tendon morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the fibrous bands or cords of connective tissue at the ends of muscle fibers that attach muscles to bones and other structures." [MeSH:D013710 "tendons", PMID:9442117] is_a: VT:0001248 ! connective tissue morphology trait is_a: VT:0002108 ! muscular system morphology trait [Term] id: VT:0005504 name: ligament morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the flexible bands or sheets of fibrous tissue that connect bones, cartilages, or other structures." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001248 ! connective tissue morphology trait [Term] id: VT:0005521 name: blood atrial natriuretic factor amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this peptide hormone in whole blood, serum, or plasma; it regulates the water-electrolyte balance and acts as a vasodilator." [RGD:cur "Rat Genome Database submission"] synonym: "circulating atrial natriuretic factor level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005524 name: kidney plasma flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to plasma passing through the kidney." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "renal plasma flow rate" EXACT [] is_a: VT:0100012 ! kidney blood vessel physiology trait [Term] id: VT:0005535 name: body temperature trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the level of heat maintained by a living being." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010454 ! organism trait [Term] id: VT:0005537 name: cerebral aqueduct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the channel in the mesencephalon that connects the third and fourth ventricles." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] synonym: "aqueduct of Sylvius morphology trait" EXACT [] synonym: "mesencephalic duct morphology trait" EXACT [] synonym: "mesencephalic vesicle morphology trait" EXACT [] is_a: VT:0000897 ! midbrain morphology trait [Term] id: VT:0005541 name: iris stromal pigmentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the deposition or aggregation of coloring matter in the lamellated connective tissue of the iris." [MP:0005208, MP:0005541] is_a: VT:0005102 ! iris pigmentation trait is_a: VT:0005208 ! iris stroma morphology trait [Term] id: VT:0005543 name: cornea thickness trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the distance between the surfaces of the cornea, the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure." [MP:0001312] synonym: "corneal thickness trait" EXACT [] is_a: VT:0001312 ! cornea morphology trait [Term] id: VT:0005545 name: lens development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the transparent structure of the eye responsible for focusing light rays." [MP:0005545] is_a: VT:0001286 ! eye development trait [Term] id: VT:0005547 name: Muller cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the elongated neuroglial cells that traverse all the layers of the retina and that act as supporting elements." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005547] synonym: "Muller fiber morphology trait" EXACT [] is_a: VT:0001325 ! retina morphology trait [Term] id: VT:0005551 name: eye electrophysiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the eye as determined through electrophysiological recordings from single cells or summary recordings from multiple cells (e.g. electroretinogram)." [NMF:pretel "Stephanie Pretel, Neuroscience Mutagenesis Facility Curator"] is_a: VT:0005253 ! eye physiology trait [Term] id: VT:0005567 name: blood total protein amount namespace: Trait.ontology def: "The total proportion, quantity, or volume in whole blood, serum, or plasma of these macromolecules." [RGD:cur "Rat Genome Database submission"] synonym: "circulating total protein level" RELATED [] synonym: "plasma total protein level" RELATED [] is_a: VT:0005416 ! blood protein amount [Term] id: VT:0005581 name: renin activity namespace: Trait.ontology def: "The degree of function or response of this enzyme, which cleaves angiotensinogen and creates angiotensin I." [RGD:cur "Rat Genome Database submission"] synonym: "angiotensinogenase activity" EXACT [] is_a: VT:0005584 ! enzyme/coenzyme activity trait [Term] id: VT:0005584 name: enzyme/coenzyme activity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree of function or response of any of these proteins, or their cofactors, which act as catalysts to induce chemical changes in other substances." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: GO:0003824 "catalytic activity" is_a: VT:0002121 ! metabolism trait [Term] id: VT:0005587 name: Meckel's cartilage development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cartilage bar in the mandibular arch that forms a temporary supporting structure in the embryonic mandible; gives rise to middle ear bones and sphenomandibular and anterior malleolar ligaments." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005587] synonym: "mandibular cartilage development trait" EXACT [] is_a: VT:0015047 ! head development trait [Term] id: VT:0005592 name: blood vessel smooth muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the nonstriated, involuntary muscle tissue of the structures that convey blood throughout the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D009131 "muscle, smooth, vascular", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "vascular smooth muscle morphology trait" RELATED [] xref: MP:0005592 is_a: VT:0000767 ! smooth muscle morphology trait is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0005593 name: blood vessel smooth muscle contractility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the nonstriated, involuntary muscle tissue of the structures that convey blood throughout the body to shorten or develop increased tension." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D009131 "muscle, smooth, vascular", RGD:cur "Rat Genome Database submission"] synonym: "vascular smooth muscle contractility" RELATED [] is_a: VT:0000740 ! smooth muscle contractility trait is_a: VT:0005595 ! blood vessel smooth muscle physiology trait [Term] id: VT:0005594 name: blood vessel smooth muscle dilation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the widening of the nonstriated, involuntary muscle tissue of the structures that convey blood throughout the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D009131 "muscle, smooth, vascular", RGD:cur "Rat Genome Database submission"] synonym: "vascular smooth muscle dilation" RELATED [] is_a: VT:0005595 ! blood vessel smooth muscle physiology trait [Term] id: VT:0005595 name: blood vessel smooth muscle physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the nonstriated, involuntary muscle tissue of the structures that convey blood throughout the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D009131 "muscle, smooth, vascular", RGD:cur "Rat Genome Database submission"] synonym: "vascular smooth muscle physiology trait" RELATED [] is_a: VT:0010111 ! smooth muscle physiology trait [Term] id: VT:0005603 name: neuron size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of any of the structural and functional units of the nervous system, which consist of the nerve cell body, the dendrites, and the axon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:cur "Rat Genome Database submission"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0005609 name: blood antidiuretic hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this peptide hormone in whole blood, serum, or plasma; it is normally released by the neurohypophysis to control water metabolism and balance by regulating water loss; it also contracts smooth muscle." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator", RGD:cur "Rat Genome Database submission"] synonym: "blood antidiuretic hormone level" RELATED [] synonym: "circulating antidiuretic hormone level" RELATED [] synonym: "circulating level of ADH" RELATED [] synonym: "circulating level of vasopressin" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005623 name: meninges morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the membranes covering the spinal cord and brain, including the dura mater (external), arachnoid (middle), and pia mater (internal)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003632 ! nervous system morphology trait [Term] id: VT:0005629 name: lung mass namespace: Trait.ontology def: "The amount of matter in either or both of the spongy organs of respiration contained within the pleural cavity of the thorax." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", RGD:cur "Rat Genome Database submission"] is_a: VT:0003641 ! lung size trait [Term] id: VT:0005636 name: mineral homeostasis trait namespace: Trait.ontology def: "Any measurable characteristic related to the state of equilibrium in the body with respect to any of the inorganic elements or compounds that have importance in body functions." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_a: VT:0015077 ! molecule homeostasis trait [Term] id: VT:0005637 name: iron homeostasis trait namespace: Trait.ontology def: "Any measurable characteristic related to the state of equilibrium in the body with respect to this metallic element that normally occurs in the heme of hemoglobin, myoglobin, transferrin, ferritin, and iron-containing porphyrins; it is an essential component of enzymes such as catalase, peroxidase, and various cytochromes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005636 ! mineral homeostasis trait [Term] id: VT:0005645 name: hypothalamus physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the functions of or processes in the ventral and medial region of the diencephalon forming the walls of the ventral half of the third ventricle, which is normally involved in the functions of the autonomic (visceral motor) nervous system and, through its vascular link with the anterior lobe of the pituitary gland, in endocrine mechanisms." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015058 ! brain physiology trait is_a: VT:4000013 ! neuroendocrine gland physiology trait [Term] id: VT:0005646 name: pituitary gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the unpaired compound gland suspended from the base of the hypothalamus by a short extension of the infundibulum, the infundibular or pituitary stalk." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:4000013 ! neuroendocrine gland physiology trait [Term] id: VT:0005647 name: sex gland physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction." [MP:0005647] xref: ATOL:0000438 is_a: VT:0001919 ! reproductive system physiology trait is_a: VT:0002164 ! gland physiology trait [Term] id: VT:0005650 name: limb bud morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the swellings on the trunk of the embryo that become limbs." [MGI:hdene "Howard Dene, Mouse Genome Informatics Curator", PMID:10705376] is_a: VT:0006279 ! limb development trait [Term] id: VT:0005651 name: gonad rudiment morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the undifferentiated mesoderm that gives rise to the gonads." [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] is_a: VT:0003936 ! reproductive system development trait [Term] id: VT:0005657 name: neural plate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE flat, thickened layer of ectodermal cells in the neuroectodermal area of the embryo's dorsal surface that develops into the neural tube and neural crest." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:hdene "Howard Dene, Mouse Genome Informatics Curator", PMID:11301255] is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0005660 name: blood epinephrine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this catecholamine hormone that stimulates the adrenergic receptors and that causes systemic vasoconstriction and gastrointestinal relaxation, stimulates the heart, and dilates bronchi and cerebral vessels." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "blood epinephrine level" RELATED [] synonym: "circulating adrenaline level" RELATED [] synonym: "circulating adreniline concentration" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005663 name: blood norepinephrine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this precursor of epinephrine that is a widespread central and autonomic neurotransmitter." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] synonym: "blood norepinephrine level" RELATED [] synonym: "circulating noradrenaline level" RELATED [] synonym: "circulating noradreniline concentration" RELATED [] synonym: "circulating norepinephrine level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005666 name: adipose physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the fat-storing cells/tissue." [MP:0005666] synonym: "fat physiology trait" EXACT [] is_a: VT:0010064 ! connective tissue physiology trait [Term] id: VT:0005667 name: blood leptin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the peptide hormone secreted by white adipocytes and believed to regulate food intake and energy balance." [MP:0005667, PMID:8757131] synonym: "blood leptin level" RELATED [] synonym: "circulating leptin level" RELATED [] is_a: VT:0005418 ! blood hormone amount [Term] id: VT:0005674 name: arterial trunk division extent namespace: Trait.ontology def: "The degree to which the septation of the path through which blood exits the heart has reached its end point." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "arterial trunk division completeness" RELATED [] is_a: VT:0000135 ! outflow tract morphology trait [Term] id: VT:0005675 name: gall bladder size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the gall bladder, the organ that serves as a storage reservoir for bile." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", PMID:7761462] is_a: VT:0005084 ! gall bladder morphology trait [Term] id: VT:0006000 name: corneal epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the layers of epithelial cells covering the front of the cornea." [MP:0006000] is_a: VT:0001312 ! cornea morphology trait [Term] id: VT:0006004 name: interneuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that exclusively interact with other neurons." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0002882 ! neuron morphology trait [Term] id: VT:0006005 name: interneuron quantity namespace: Trait.ontology def: "The proportion or number of neurons that interact only with other neurons." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "interneuron number" EXACT [] is_a: VT:0006004 ! interneuron morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0006006 name: sensory neuron quantity namespace: Trait.ontology def: "The proportion or number of cells that innervate an effector (muscle or glandular) tissue." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000965 ! sensory neuron morphology trait [Term] id: VT:0006007 name: basal ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of a group of nuclei associated with the ability to carry out willed movements, including the caudate, putamen, nucleus accumbens, globus pallidus, substantia nigra, and subthalamic nucleus." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MP:0006007] synonym: "basal ganglia morphology trait" EXACT [] is_a: VT:0000783 ! forebrain morphology trait [Term] id: VT:0006008 name: neurogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of neurons during their formation and differentiation." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "neuronal proliferation" EXACT [] is_a: VT:0003861 ! nervous system development trait [Term] id: VT:0006009 name: neuronal migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement of immature neurons from germinal zones to specific positions where they will reside as they mature." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0006008 ! neurogenesis trait [Term] id: VT:0006011 name: endolymphatic duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the small membranous canal, connecting with both saccule and utricle of the membranous labyrinth, passing through the aqueduct of vestibule, and terminating in the endolymphatic sac." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0006011] synonym: "ductus endolymphaticus morphology trait" EXACT [] is_a: VT:0000026 ! inner ear morphology trait [Term] id: VT:0006014 name: endolymphatic sac size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the dilated blind extremity of the endolymphatic duct." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0006011 ! endolymphatic duct morphology trait [Term] id: VT:0006018 name: tympanic membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thin, tense membrane forming the greater part of the lateral wall of the tympanic cavity and separating it from the external acoustic meatus; the tympanic membrane constitutes the boundary between the external and middle ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "drum membrane morphology trait" EXACT [] synonym: "membrana tympani morphology trait" EXACT [] synonym: "myringa morphology trait" EXACT [] synonym: "myrinx morphology trait" EXACT [] is_a: VT:0000049 ! middle ear morphology trait [Term] id: VT:0006019 name: tympanic membrane size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the drum membrane that forms the greater part of the lateral wall of the tympanic cavity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0006019] is_a: VT:0006018 ! tympanic membrane morphology trait [Term] id: VT:0006020 name: tympanic ring size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the bony ring at the ear canal to which the tympanic membrane is attached." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0000030] is_a: VT:0000030 ! tympanic ring morphology trait [Term] id: VT:0006021 name: Reissner membrane morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the Reissner's membrane which separates the cochlear duct from the vestibular canal, i.e., the endolymph of the scala media from the perilymph of the scala vestibuli; the Reissner membrane consists of squamous epithelial cells with microvilli toward the ductus, a basement membrane, and a thin layer of connective tissue toward the scala." [MP:0006021] synonym: "membrana vestibularis ductus cochlearis morphology trait" EXACT [] synonym: "morphology trait of the vestibular wall of cochlear duct" EXACT [] synonym: "paries vestibularis ductus cochlearis morphology trait" EXACT [] synonym: "Reissner's membrane morphology trait" EXACT [] synonym: "vestibular membrane morphology trait" EXACT [] is_a: VT:0000031 ! cochlea morphology trait [Term] id: VT:0006025 name: Reissner membrane size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the Reissner's membrane which separates the cochlear duct from the vestibular canal, i.e. the endolymph of the scala media from the perilymph of the scala vestibuli; the Reissner membrane consists of squamous epithelial cells with microvilli toward the ductus, a basement membrane, and a thin layer of connective tissue toward the scala." [MP:0006021] is_a: VT:0006021 ! Reissner membrane morphology trait [Term] id: VT:0006026 name: terminal bronchiole tube size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the terminal lung buds." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "terminal lung bud size trait" EXACT [] is_a: VT:0002268 ! terminal bronchiole morphology trait [Term] id: VT:0006027 name: respiratory alveologenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the generation of alveoli." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:14499643] is_a: VT:0001176 ! lung development trait [Term] id: VT:0006028 name: bronchiole branching trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphogenesis of the bronchioles." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001176 ! lung development trait [Term] id: VT:0006029 name: sclerotome morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of one or more of the masses of mesodermal tissue that is derived from the somites and is adjacent to the notochord that give rise to the ribs and vertebrae." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0010005 ! bone development trait [Term] id: VT:0006030 name: otic vesicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the paired epithelial sacs formed from the otic placode that give rise to the structures of the inner ear." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0009806] synonym: "auditory vesicle morphology trait" EXACT [] is_a: VT:0003938 ! ear development trait [Term] id: VT:0006031 name: branchial pouch morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the series of projections that form between the branchial arches." [ISBN:0-914294-08-3 "Gray's Anatomy", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "pharyngeal pouch morphology trait" EXACT [] synonym: "visceral pouch morphology trait" EXACT [] is_a: VT:0002085 ! embryonic cell/tissue morphology trait [Term] id: VT:0006032 name: ureteric bud morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the ureteric bud that with the metanephric mesenchyme gives rise to the kidneys." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:10471511] is_a: VT:0000527 ! kidney development trait [Term] id: VT:0006033 name: external auditory canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the canal that connects the outer and middle ear." [MP:0006033] synonym: "external meatus morphology trait" EXACT [] is_a: VT:0002177 ! outer ear morphology trait [Term] id: VT:0006034 name: urine myoglobin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of the oxygen-carrying protein of muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:cur "Rat Genome Database submission"] synonym: "urine myoglobin level" EXACT [] is_a: VT:0005160 ! urine protein amount [Term] id: VT:0006055 name: blood vessel endothelial cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells that line the blood vessels." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "vascular endothelial cell morphology trait" RELATED [] synonym: "vascular endothelium morphology trait" EXACT [] xref: MP:0006005 is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0006057 name: blood vessel endothelial cell quantity namespace: Trait.ontology def: "The proportion or number of cells that line blood vessels." [RGD:MS] synonym: "vascular endothelial cell number" RELATED [] is_a: VT:0006055 ! blood vessel endothelial cell morphology trait [Term] id: VT:0006061 name: atrium symmetry namespace: Trait.ontology def: "Correspondence in size, shape, and relative position of the atria of the heart on opposite sides of a dividing line or plane or about a center or axis." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "atrial symmetry" RELATED [] is_a: VT:0003105 ! heart atrium morphology trait [Term] id: VT:0006062 name: vena cava morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of either of the two largest veins in the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "caval vein morphology trait" EXACT [] xref: MP:0006062 is_a: VT:0002725 ! vein morphology trait [Term] id: VT:0006063 name: inferior vena cava morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the principal vein draining blood from the lower portion of the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "inferior caval vein morphology trait" EXACT [] is_a: VT:0006062 ! vena cava morphology trait [Term] id: VT:0006064 name: superior vena cava morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the principal vein draining blood from the upper portion of the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "superior caval vein morphology trait" EXACT [] is_a: VT:0006062 ! vena cava morphology trait [Term] id: VT:0006065 name: heart orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the heart within the chest cavity." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:MS] synonym: "cardiac position" RELATED [] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0006068 name: horizontal cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the laterally interconnecting neurons in the outer plexiform layer that connect rods of one part of the retina with cones in another part of the retina." [MP:0006068] is_a: VT:0000965 ! sensory neuron morphology trait is_a: VT:0001325 ! retina morphology trait is_a: VT:0006004 ! interneuron morphology trait [Term] id: VT:0006069 name: retinal neuronal layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the neuronal layers that make up the retina, including the ganglion cell, inner plexiform, inner nuclear, outer plexiform, outer nuclear layers, the inner and outer segments." [ISBN:0-914294-08-3 "Gray's Anatomy", MP:0006069] is_a: VT:0003727 ! retinal layer morphology trait [Term] id: VT:0006070 name: retinal photoreceptor quantity namespace: Trait.ontology def: "The proportion or number of rods and/or cones." [MP:0001004] is_a: VT:0001004 ! retinal photoreceptor morphology trait [Term] id: VT:0006071 name: retinal progenitor cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cells that give rise to the various cells of the retina." [MP:0006071] is_a: VT:0001286 ! eye development trait [Term] id: VT:0006073 name: retinal bipolar cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cells that transmit signals from the photoreceptors to retinal amacrine and ganglion cells." [MP:0006073] is_a: VT:0001325 ! retina morphology trait is_a: VT:0006004 ! interneuron morphology trait [Term] id: VT:0006074 name: retinal rod bipolar cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the bipolar cells that function in low light and transmit signals only through amacrine cells." [MP:0006074] is_a: VT:0006073 ! retinal bipolar cell morphology trait [Term] id: VT:0006075 name: retinal cone bipolar cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the retinal bipolar cells that connect to both ganglion and amacrine cells." [MP:0006075] is_a: VT:0006073 ! retinal bipolar cell morphology trait [Term] id: VT:0006076 name: blood homocysteine amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of this amino acid." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", MS:RGD, NCBI:matt "Matthew Mailman"] synonym: "blood serum homocysteine level" RELATED [] synonym: "circulating homocysteine amount" RELATED [] synonym: "circulating homocysteine content" RELATED [] is_a: VT:0005311 ! blood amino acid amount [Term] id: VT:0006078 name: nipple morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the erectile protuberance at the tip of the mammary gland in which the mammary ducts terminate and from which milk can be secreted." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:MS] synonym: "nipple morphology trait" EXACT [] synonym: "teat morphology trait" RELATED [] xref: ATOL:0000537 is_a: VT:0000627 ! mammary gland morphology trait [Term] id: VT:0006083 name: blood vessel elastic tissue morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the tissue that is found in the tunica media of the vessels wall and allows vessels to stretch." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "elastic laminae morphology trait" EXACT [] synonym: "vascular elastic tissue morphology trait" RELATED [] is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0006084 name: blood phospholipid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the fat derivatives in which one fatty acid has been replaced by a phosphate group." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", NCBI:matt "Matthew Mailman"] synonym: "blood phospholipid level" RELATED [] is_a: VT:0003949 ! blood lipid amount [Term] id: VT:0006089 name: saccule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the smaller of the two sacs in the vestibule." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MP:0006089] is_a: VT:0004425 ! otolith organ morphology trait [Term] id: VT:0006090 name: utricle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the larger of the two sacs in the vestibule." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MP:0006090] is_a: VT:0004425 ! otolith organ morphology trait [Term] id: VT:0006091 name: olfactory epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the epithelial cells that line the interior of the nose." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:15322545] is_a: VT:0005499 ! olfactory system morphology trait [Term] id: VT:0006092 name: olfactory neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the neurons in the olfactory epithelium that are activated by specific odorants." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "olfactory receptor neuron morphology trait" EXACT [] is_a: VT:0001001 ! chemoreceptor morphology trait [Term] id: VT:0006096 name: retinal bipolar cell quantity namespace: Trait.ontology def: "The proportion or numbers of the cells that transmit signals from the photoreceptors to retinal amacrine and ganglion cells." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "retinal bipolar cell number" EXACT [] is_a: VT:0006073 ! retinal bipolar cell morphology trait is_a: VT:0015026 ! neuron quantity [Term] id: VT:0006097 name: cerebellum lobule development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the lobes of the cerebellum during their formation and differentiation." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:11032813] is_a: VT:0000854 ! cerebellum development trait [Term] id: VT:0006099 name: granule layer thickness namespace: Trait.ontology def: "The distance between the surfaces of the innermost cortical layer of the cerebellum that contains granule cells." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000886 ! cerebellar granule layer morphology trait [Term] id: VT:0006100 name: tegmentum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the floor of the midbrain which extends from the substantia nigra to the level of the cerebral aqueduct." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "mesencephalic tegmentum morphology trait" EXACT [] is_a: VT:0000897 ! midbrain morphology trait [Term] id: VT:0006102 name: tegmentum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the floor of the midbrain which extends from the substantia nigra to the level of the cerebral aqueduct." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0006100 ! tegmentum morphology trait [Term] id: VT:0006103 name: midbrain roof plate morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mesencephalic roof plate, including the caudal and rostral part of the midbrain roof." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000897 ! midbrain morphology trait [Term] id: VT:0006104 name: tectum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the rostral part of the midbrain roof." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0006103 ! midbrain roof plate morphology trait [Term] id: VT:0006105 name: tectum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the rostral part of the midbrain roof." [MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0006104 ! tectum morphology trait [Term] id: VT:0006107 name: atrioventricular canal morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the common canal connecting the primordial atrium and ventricle." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] is_a: VT:0000267 ! heart development trait [Term] id: VT:0006108 name: hindbrain development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the caudal region of the brain during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000913 ! brain development trait [Term] id: VT:0006113 name: heart septum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the wall between the atria or ventricles of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "cardiac septum morphology trait" EXACT [] synonym: "heart septal morphology trait" EXACT [] is_a: VT:0000266 ! heart morphology trait [Term] id: VT:0006126 name: outflow tract development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the outflow tract from a simple sphincter into its mature form." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000121 ! cardiovascular system development trait [Term] id: VT:0006127 name: great vessel orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the pulmonary vessels and aorta in relation to the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000135 ! outflow tract morphology trait [Term] id: VT:0006151 name: cornea curvature trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the degree or shape of the bend in the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001312 ! cornea morphology trait [Term] id: VT:0006162 name: eyelid thickness namespace: Trait.ontology def: "The distance between the external and internal surfaces of the skin folds covering the front of the eyeball." [MP:0006162] is_a: VT:0001340 ! eyelid morphology trait [Term] id: VT:0006168 name: epicanthal fold morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of fold of skin of the upper eyelid that partially covers the inner corner of the eye." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001340 ! eyelid morphology trait [Term] id: VT:0006173 name: myeloid dendritic cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of phagocytic cells of the myeloid lineage that capture antigens in the periphery and then migrate to the lymphoid organs and secrete cytokines to initiate immune responses." [PMID:10449155, PMID:9521319] synonym: "DC1 morphology trait" EXACT [] is_a: VT:0005461 ! dendritic cell morphology trait is_a: VT:0008248 ! mononuclear phagocyte morphology trait [Term] id: VT:0006174 name: isthmic organizer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the organizing signaling center that forms at the boundary between the midbrain and hindbrain and plays an essential role in development of the midbrain and anterior hindbrain." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000913 ! brain development trait [Term] id: VT:0006175 name: choroid size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the choroid." [MP:0005098] is_a: VT:0005098 ! choroid morphology trait [Term] id: VT:0006192 name: conjunctival blood vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the blood vessel network of the conjunctiva." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "conjunctival vascular morphology trait" RELATED [] synonym: "conjunctival vasculature" RELATED [] xref: MP:0006192 is_a: VT:0001310 ! conjunctiva morphology trait is_a: VT:0001614 ! blood vessel morphology trait [Term] id: VT:0006195 name: eyeball orientation trait namespace: Trait.ontology def: "The location or arrangement of the eye proper in relation to the eye socket." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001299 ! eye orientation trait [Term] id: VT:0006199 name: vertical eye alignment trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the vertical alignment between the eyes.\nconsider: VT:0001299" [MGI:MP "Definition from the Mammalian Phenotype ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", NCBI:matt "Matthew Mailman"] is_obsolete: true [Term] id: VT:0006210 name: orbit size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the bony cavity that contains the eyeball or of any of the parts of the bones which form the cavity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0010030] is_a: VT:0005246 ! orbit morphology trait [Term] id: VT:0006212 name: orbit width namespace: Trait.ontology def: "The distance from side to side of the bony cavity that contains the eyeball." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0010030] is_a: VT:0006210 ! orbit size trait [Term] id: VT:0006213 name: orbit depth namespace: Trait.ontology def: "The distance from exterior to interior of the bony cavity that contains the eyeball or of any of the parts of the bones which form the cavity." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0006210 ! orbit size trait [Term] id: VT:0006214 name: orbit symmetry namespace: Trait.ontology def: "Correspondence in size, shape, and relative position of the bony cavities that contain the eyeball, or of any of the parts of the bones which form the cavity, on opposite sides of a dividing line or plane or about a center or axis." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", NCBI:matt "Matthew Mailman"] is_a: VT:0005246 ! orbit morphology trait [Term] id: VT:0006215 name: optic disc morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the area in the retina where all of the axons of the ganglion cells exit the retina to form the optic nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008259] is_a: VT:0001330 ! optic nerve morphology trait is_a: VT:0002864 ! ocular fundus morphology trait [Term] id: VT:0006216 name: optic disc size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the area in the retina where all of the axons of the ganglion cells exit the retina to form the optic nerve." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008259] is_a: VT:0006215 ! optic disc morphology trait [Term] id: VT:0006221 name: optic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of fibers in the optic nerve." [NCBI:matt "Matthew Mailman"] synonym: "optic nerve fiber number" EXACT [] is_a: VT:0001330 ! optic nerve morphology trait is_a: VT:0010143 ! nerve fiber quantity [Term] id: VT:0006226 name: iris cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001322] synonym: "iris cell number" EXACT [] is_a: VT:0001322 ! iris morphology trait [Term] id: VT:0006227 name: iris development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the iris (the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye) during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", NCBI:matt "Matthew Mailman"] is_a: VT:0001286 ! eye development trait [Term] id: VT:0006228 name: iris size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the adjustable membrane, composed of the stroma and pigmented epithelium, located just in front of the crystalline lens within the eye." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0001322] is_a: VT:0001322 ! iris morphology trait [Term] id: VT:0006230 name: iris stroma cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the lamellated connective tissue of the iris." [MP:0005208] synonym: "iris stroma cell number" EXACT [] is_a: VT:0005208 ! iris stroma morphology trait [Term] id: VT:0006235 name: pupil quantity namespace: Trait.ontology def: "The proportion or number of pupils in one iris, each with sphincter muscle." [MP:0006235] synonym: "pupil number" EXACT [] is_a: VT:0001317 ! pupil morphology trait [Term] id: VT:0006237 name: choroid blood vessel morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the blood vessels of the choroid." [RGD:ms "Mary Shimoyama, Rat Genome Database Program Manager"] synonym: "choroid vascular morphology trait" RELATED [] synonym: "choroid vasculature" RELATED [] is_a: VT:0001614 ! blood vessel morphology trait is_a: VT:0005098 ! choroid morphology trait [Term] id: VT:0006241 name: pupil orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the pupil within the eye." [MP:0006241 "Definition from the Mammalian Phenotype ontology"] synonym: "placement of pupils" EXACT [] synonym: "pupil placement" EXACT [] is_a: VT:0001317 ! pupil morphology trait [Term] id: VT:0006245 name: lens orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the lens within the eye." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001303 ! lens morphology trait [Term] id: VT:0006250 name: line of Schwalbe morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the thickened peripheral margin of the vitreous membrane of the cornea." [MP:0006250] synonym: "Schwalbe's ring morphology trait" EXACT [] is_a: VT:0005203 ! trabecular meshwork morphology trait [Term] id: VT:0006251 name: ability to open eyelids namespace: Trait.ontology def: "The ability to open the eyelids." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", NCBI:matt "Matthew Mailman"] is_a: VT:0005253 ! eye physiology trait [Term] id: VT:0006256 name: gustatory papillae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the papillae that contain taste buds, including the fungiform, foliate, and circumvallate papillae." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "taste papillae morphology trait" EXACT [] is_a: VT:0000764 ! tongue epithelium morphology trait [Term] id: VT:0006257 name: fungiform papillae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0006256 ! gustatory papillae morphology trait [Term] id: VT:0006258 name: circumvallate papillae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "vallate papillae morphology trait" EXACT [] is_a: VT:0006256 ! gustatory papillae morphology trait [Term] id: VT:0006259 name: foliate papillae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the papillae located on the sides of the tongue." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0006256 ! gustatory papillae morphology trait [Term] id: VT:0006260 name: gustatory papillae taste bud morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the taste buds located on the gustatory papillae, which includes the fungiform, foliate, and circumvallate papillae." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:10363708] is_a: VT:0001002 ! taste bud morphology trait [Term] id: VT:0006274 name: urine sodium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of this metallic element, the most plentiful extracellular ion in the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "urine sodium level" EXACT [] is_a: VT:0015086 ! urine mineral amount [Term] id: VT:0006276 name: autonomic nervous system physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the sensory and motor neurons that run between the central nervous system (especially the hypothalamus and medulla oblongata) and various internal organs (heart, lungs, endocrine and exocrine glands), responsible for controlling involuntary bodily functions." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003633 ! nervous system physiology trait [Term] id: VT:0006277 name: parasympathetic nervous system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the craniosacral portion of the autonomic nervous system." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:anna "Anna Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0006276 ! autonomic nervous system physiology trait [Term] id: VT:0006279 name: limb development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the limbs during their formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015069 ! appendage development trait [Term] id: VT:0006280 name: digit development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the digits during their formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", PMID:11470817, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000572 ! autopod morphology trait [Term] id: VT:0006281 name: tail development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the tail during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015069 ! appendage development trait [Term] id: VT:0006282 name: posterior horn morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the dorsal gray matter of the spinal cord." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "dorsal horn morphology trait" EXACT [] synonym: "posterior column morphology trait" EXACT [] synonym: "posterior cornu morphology trait" EXACT [] is_a: VT:0000955 ! spinal cord morphology trait [Term] id: VT:0006385 name: memory T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the set of long-lived T cells differentiated from T cells activated by a specific antigen encountered during a past immune response." [http://www.biology-online.org/ "Biology Online.org", MGI:adiehl "Alex Diehl, Mouse Genome Informatics Curator", MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator"] synonym: "memory T lymphocyte morphology trait" EXACT [] synonym: "memory T-cell morphology trait" EXACT [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0006387 name: T cell quantity namespace: Trait.ontology def: "The proportion or number of lymphocytes that are responsible for cell-mediated immunity and immune system regulation." [RGD:MS] synonym: "T cell number" EXACT [] synonym: "T lymphocyte number" EXACT [] synonym: "T-cell number" EXACT [] is_a: VT:0000717 ! lymphocyte quantity is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0006414 name: T cell apoptosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which T cells undergo programmed cell death." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "T lymphocyte apoptosis" EXACT [] synonym: "T-cell apoptosis" EXACT [] synonym: "T-lymphocyte apoptosis" EXACT [] is_a: VT:0002444 ! T cell physiology trait [Term] id: VT:0007000 name: heart apex orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the top of the heart in relation the rostral-caudal axis of the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:MS] synonym: "cardiac apex directionality" RELATED [] is_a: VT:0006065 ! heart orientation trait [Term] id: VT:0007001 name: endocardial cushion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mounds of embryonic connective tissue that bulge into the embryonic atrioventricular canal; these mounds eventually fuse to form the valves between the right and left atrioventricular orifices." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000267 ! heart development trait [Term] id: VT:0007002 name: endocardial cushion size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical dimensions magnitude of the mounds of embryonic connective tissue that bulge into the embryonic atrioventricular canal; these mounds fuse to form the valves between the right and left atrioventricular orifices." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0007001 ! endocardial cushion morphology trait [Term] id: VT:0007003 name: endocardial cushion thickness namespace: Trait.ontology def: "The distance between the two surfaces of the mounds of embryonic connective tissue that bulge into the embryonic atrioventricular canal; these mounds fuse to form the valves between the right and left atrioventricular orifices." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0007002 ! endocardial cushion size trait [Term] id: VT:0007005 name: atrioventricular canal formation extent namespace: Trait.ontology def: "The degree to which the development of the common canal connecting the primordial atrium and ventricle has reached its end point." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "atrioventricular canal completeness" RELATED [] is_a: VT:0006107 ! atrioventricular canal morphology trait [Term] id: VT:0007007 name: atrioventricular canal configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the common canal connecting the primordial atrium and ventricle." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0006107 ! atrioventricular canal morphology trait [Term] id: VT:0007009 name: atrium septum configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the wall separating the upper chambers of the heart." [RGD:MS] is_a: VT:0007081 ! atrium septum morphology trait [Term] id: VT:0007010 name: cardiomyocyte quantity namespace: Trait.ontology def: "The proportion or number of striated muscle cells in the heart as a whole or in any substructure of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:MS] synonym: "cardiac myocyte number" RELATED [] synonym: "cardiomyocyte number" EXACT [] synonym: "heart muscle cell number" EXACT [] is_a: VT:0000061 ! cardiomyocyte morphology trait is_a: VT:0010118 ! muscle cellular composition trait [Term] id: VT:0007012 name: mitral valve configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the valve between the left atrium and the left ventricle of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000033 ! mitral valve morphology trait [Term] id: VT:0007016 name: tricuspid valve configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the valve between the right atrium and the right ventricle of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000036 ! tricuspid valve morphology trait [Term] id: VT:0007019 name: aortic valve configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the valve between the left ventricle and the ascending aorta." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000040 ! aortic valve morphology trait [Term] id: VT:0007022 name: pulmonary valve configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the valve between the right ventricle and the pulmonary trunk." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000044 ! pulmonary valve morphology trait [Term] id: VT:0007024 name: left atrium configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the left upper chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000020 ! left atrium morphology trait [Term] id: VT:0007026 name: left atrium mass namespace: Trait.ontology def: "The amount of matter in the left upper chamber of the heart." [RGD:MS] synonym: "left atrial weight" RELATED [] is_a: VT:0000012 ! left atrium size trait [Term] id: VT:0007027 name: right atrium mass namespace: Trait.ontology def: "The amount of matter in the right upper chamber of the heart." [RGD:MS] synonym: "right atrial weight" RELATED [] is_a: VT:0000005 ! right atrium size trait [Term] id: VT:0007028 name: heart mass namespace: Trait.ontology def: "The amount of matter in the viscous of cardiac muscle that maintains the circulation of the blood." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "cardiac weight" RELATED [] is_a: VT:0005406 ! heart size trait [Term] id: VT:0007030 name: left ventricle capacity namespace: Trait.ontology def: "The volume of or amount contained in the left lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:MS] is_a: VT:0002753 ! left ventricle size trait [Term] id: VT:0007031 name: left ventricle mass namespace: Trait.ontology def: "The amount of matter in the left lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:MS] is_a: VT:0002753 ! left ventricle size trait [Term] id: VT:0007032 name: right ventricle capacity namespace: Trait.ontology def: "The volume of or amount contained in the right lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:MS] synonym: "right ventricular volume" RELATED [] is_a: VT:0002754 ! right ventricle size trait [Term] id: VT:0007033 name: right ventricle mass namespace: Trait.ontology def: "The amount of matter in the right lower chamber of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:MS] synonym: "right ventricular weight" RELATED [] is_a: VT:0002754 ! right ventricle size trait [Term] id: VT:0007036 name: pericardium orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the pericardium in relation to the heart and/or great vessels." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "pericardial configuration" RELATED [] is_a: VT:0000288 ! pericardium morphology trait [Term] id: VT:0007038 name: endocardial cushion orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement in relation to each other and the developing heart of the mounds of embryonic connective tissue that bulge into the embryonic atrioventricular canal; these mounds eventually fuse to form the valves between the right and left atrioventricular orifices." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0007001 ! endocardial cushion morphology trait [Term] id: VT:0007041 name: heart tube orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the early embryonic heart in relation to itself and the surrounding tissue." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:MS] is_a: VT:0000125 ! heart tube morphology trait [Term] id: VT:0007047 name: aorta configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the main trunk of the systemic arteries." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "aortic configuration" RELATED [] is_a: VT:0000272 ! aorta morphology trait [Term] id: VT:0007048 name: aorta elastic tissue molecular composition trait namespace: Trait.ontology def: "Any measurable or observable characteristic pertaining to the proportions of molecules (proteins, minerals, nutrients, gases, or other substances) within the slender connective tissue fiber in aortic tissue characterized by great elasticity." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "aortic elastic fiber composition" RELATED [] is_a: VT:0000170 ! blood vessel physiology trait [Term] id: VT:0007052 name: aortic arch configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the portion of the descending aorta proceeding from the arch of the aorta and extending to the diaphragm." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0004113 ! aortic arch morphology trait [Term] id: VT:0007075 name: left ventricle wall thickness namespace: Trait.ontology def: "The distance between the surfaces of the wall of the left lower chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003921 ! left ventricle morphology trait [Term] id: VT:0007081 name: atrium septum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the wall between the upper chambers of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "atrial septal morphology trait" RELATED [] synonym: "atrial septum morphology trait" RELATED [] is_a: VT:0003105 ! heart atrium morphology trait is_a: VT:0006113 ! heart septum morphology trait [Term] id: VT:0007082 name: ventricle septum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the wall between the lower chambers of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "ventricle septal morphology trait" RELATED [] synonym: "ventricular septal morphology trait" RELATED [] synonym: "ventricular septum morphology trait" RELATED [] is_a: VT:0005294 ! heart ventricle morphology trait is_a: VT:0006113 ! heart septum morphology trait [Term] id: VT:0007084 name: ventricle septum configuration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of the wall separating the lower chambers of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", RGD:MS] synonym: "interventricular septal configuration" RELATED [] synonym: "ventricular septal configuration" RELATED [] is_a: VT:0007082 ! ventricle septum morphology trait [Term] id: VT:0007086 name: ventricle septum thickness namespace: Trait.ontology def: "The distance between the surfaces of the wall between the two lower chambers of the heart." [RGD:MS] synonym: "interventricular septal thickness" RELATED [] synonym: "ventricular septal thickness" RELATED [] is_a: VT:0007082 ! ventricle septum morphology trait [Term] id: VT:0007087 name: left ventricle posterior wall thickness namespace: Trait.ontology def: "The distance betwen the surfaces of the wall closest to the back of the left ventricle." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0007075 ! left ventricle wall thickness [Term] id: VT:0007088 name: right ventricle wall thickness namespace: Trait.ontology def: "The distance between the surfaces of the wall of the right lower chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003920 ! right ventricle morphology trait [Term] id: VT:0007089 name: right ventricle posterior wall thickness namespace: Trait.ontology def: "The distance between the surfaces of the wall closest to the back of the right lower chamber of the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0007088 ! right ventricle wall thickness [Term] id: VT:0007090 name: aorta size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the main trunk of the systemic arteries." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "aortic size trait" RELATED [] is_a: VT:0000272 ! aorta morphology trait [Term] id: VT:0007091 name: aorta root width namespace: Trait.ontology def: "The distance from side to side of the portion of the aorta attached to the atrioventricular fibrous rings and myocardium." [RGD:MS] synonym: "aortic root diameter" RELATED [] is_a: VT:0007090 ! aorta size trait [Term] id: VT:0008020 name: dermis mast cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of cells in the dermis (the layer of the skin deep to the epidermis, consisting of a dense bed of vascular, connective tissue) containing numerous basophilic granules and capable of releasing large amounts of histamine and heparin upon activation." [CL:0000097 "mast cell", Dorland:Dorlands Illustrated Medical Dictionary 31st Ed, MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] is_a: VT:0000359 ! mast cell morphology trait is_a: VT:0001243 ! dermis morphology trait [Term] id: VT:0008036 name: NK T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repertoire of variable region gene segments." [GO:0001865] comment: Note that these are a distinct cell population from NK cells. synonym: "natural killer T cell morphology trait" EXACT [] synonym: "natural killer T lymphocyte morphology trait" EXACT [] synonym: "natural killer T-cell morphology trait" EXACT [] synonym: "natural killer T-lymphocyte morphology trait" EXACT [] synonym: "natural T cell morphology trait" EXACT [] synonym: "NK T lymphocyte morphology trait" EXACT [] synonym: "NK T-cell morphology trait" EXACT [] synonym: "NK T-lymphocyte morphology trait" EXACT [] synonym: "NKT cell morphology trait" EXACT [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0008037 name: T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of lymphocytes that are responsible for cell-mediated immunity and immune system regulation." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "T lymphocyte morphology trait" EXACT [] synonym: "T-cell morphology trait" EXACT [] synonym: "T-lymphocyte morphology trait" EXACT [] synonym: "thymocyte morphology trait" NARROW [] is_a: VT:0002619 ! lymphocyte morphology trait [Term] id: VT:0008038 name: NK T cell quantity namespace: Trait.ontology def: "The proportion or number of the distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repertoire of variable region gene segments." [GO:0001865] synonym: "natural killer T cell number" EXACT [] synonym: "natural killer T lymphocyte number" EXACT [] synonym: "natural killer T-cell number" EXACT [] synonym: "natural killer T-lymphocyte number" EXACT [] synonym: "natural T cell number" EXACT [] synonym: "NK T lymphocyte number" EXACT [] synonym: "NK T-cell number" EXACT [] synonym: "NK T-lymphocyte number" EXACT [] synonym: "NKT cell number" EXACT [] is_a: VT:0006387 ! T cell quantity is_a: VT:0008036 ! NK T cell morphology trait [Term] id: VT:0008042 name: NK T cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the distinct lineage of T cells expressing natural killer cell markers and having T cell receptors characterized by the usage of a restricted repertoire of variable region gene segments." [MGI:GO "Definition from the Gene Ontology"] synonym: "natural killer T cell physiology trait" EXACT [] synonym: "natural killer T lymphocyte physiology trait" EXACT [] synonym: "natural killer T-cell physiology trait" EXACT [] synonym: "natural killer T-lymphocyte physiology trait" EXACT [] synonym: "natural T cell physiology trait" EXACT [] synonym: "NK T lymphocyte physiology trait" EXACT [] synonym: "NK T-cell physiology trait" EXACT [] synonym: "NK T-lymphocyte physiology trait" EXACT [] synonym: "NKT cell physiology trait" EXACT [] is_a: VT:0002444 ! T cell physiology trait [Term] id: VT:0008043 name: NK cell quantity namespace: Trait.ontology def: "The proportion or number of non-T, non-B lymphocytes, having a granular morphology and which are important in innate immunity to viruses and other intracellular pathogens; in addition, these cells can kill certain tumor cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "natural killer cell number" EXACT [] synonym: "NK cell number" EXACT [] is_a: VT:0000717 ! lymphocyte quantity is_a: VT:0005068 ! NK cell morphology trait [Term] id: VT:0008048 name: memory T cell quantity namespace: Trait.ontology def: "The proportion or number of the set of long-lived T cells differentiated from T cells activated by a specific antigen encountered during a past immune response." [http://www.biology-online.org/ "Biology Online.org", MGI:adiehl "Alex Diehl, Mouse Genome Informatics Curator", MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator"] is_a: VT:0006385 ! memory T cell morphology trait is_a: VT:0006387 ! T cell quantity [Term] id: VT:0008051 name: memory T cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the set of long-lived T cells differentiated from T cells activated by a specific antigen encountered during a past immune response." [http://www.biology-online.org/ "Biology Online.org", MGI:adiehl "Alex Diehl, Mouse Genome Informatics Curator", MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator"] is_a: VT:0002444 ! T cell physiology trait [Term] id: VT:0008053 name: NK cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the non-T, non-B lymphocytes, having a granular morphology and which are important in innate immunity to viruses and other intracellular pathogens; in addition, these cells can kill certain tumor cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "natural killer cell development trait" EXACT [] synonym: "NK cell differentiation" EXACT [] is_a: VT:0002401 ! lymphopoiesis trait [Term] id: VT:0008054 name: uterine NK cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the uterine subset of the non-T, non-B lymphocytes, having a granular morphology and which are important in innate immunity to viruses and other intracellular pathogens; uNK cells contribute to uterine decidualization and are recruited to implantation sites." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", PMID:12887272] synonym: "GMG cell morphology trait" EXACT [] synonym: "granulated metrial gland cell morphology trait" EXACT [] synonym: "uNK cell morphology trait" EXACT [] synonym: "uterine natural killer cell morphology trait" EXACT [] is_a: VT:0001120 ! uterus morphology trait [Term] id: VT:0008073 name: CD4-positive T cell quantity namespace: Trait.ontology def: "The proportion or number of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CD4+ T cell number" EXACT [] synonym: "CD4-positive T cell number" EXACT [] is_a: VT:0001830 ! effector T cell quantity is_a: VT:0002432 ! CD4-positive T cell morphology trait [Term] id: VT:0008076 name: CD4-positive T cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CD4+ T cell development trait" EXACT [] synonym: "CD4+ T cell differentiation" EXACT [] synonym: "CD4-positive T cell differentiation" EXACT [] is_a: VT:0002145 ! T cell development trait [Term] id: VT:0008077 name: CD8-positive T cell quantity namespace: Trait.ontology def: "The proportion or number of the regulatory subset of T lymphocytes that are involved in MHC class I restricted interactions." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CD8+ T cell number" EXACT [] synonym: "CD8-positive T cell number" EXACT [] is_a: VT:0001830 ! effector T cell quantity is_a: VT:0005010 ! CD8-positive T cell morphology trait [Term] id: VT:0008080 name: CD8-positive T cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the regulatory subset of T lymphocytes that are involved in MHC class I restricted interactions." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "CD8+ T cell development trait" EXACT [] synonym: "CD8+ T cell differentiation" EXACT [] synonym: "CD8-positive T cell differentiation" EXACT [] is_a: VT:0002145 ! T cell development trait [Term] id: VT:0008081 name: single-positive T cell quantity namespace: Trait.ontology def: "The proportion or number of T cells bearing either CD4-positive or CD8-positive markers on their surface." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "single positive T cell number" EXACT [] is_a: VT:0001830 ! effector T cell quantity [Term] id: VT:0008085 name: T-helper 1 cell quantity namespace: Trait.ontology def: "The proportion or number of the type of T-helper cell whose cytokine production favors cellular immune responses and delayed type hypersensitivity." [CL:0000545, ISBN:0781735149] synonym: " T helper 1 cell number" EXACT [] synonym: "helper T cell type 1 cell number" EXACT [] synonym: "helper T lymphocyte type 1 cell number" EXACT [] synonym: "helper T-cell type 1 cell number" EXACT [] synonym: "helper T-lymphocyte type 1 cell number" EXACT [] synonym: "TH1 cell number" EXACT [] is_a: VT:0002433 ! T-helper 1 cell morphology trait is_a: VT:0008073 ! CD4-positive T cell quantity [Term] id: VT:0008088 name: T-helper 1 cell differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which relatively unspecialized cells acquire the specialized features of the subset of the type of T-helper cell whose cytokine production favors cellular immune responses and delayed type hypersensitivity." [CL:0000545, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "helper T cell type 1 cell differentiation" EXACT [] synonym: "helper T lymphocyte type 1 cell differentiation" EXACT [] synonym: "helper T-cell type 1 cell differentiation" EXACT [] synonym: "helper T-lymphocyte type 1 cell differentiation" EXACT [] synonym: "T helper 1 cell differentiation" EXACT [] synonym: "TH1 cell differentiation" EXACT [] synonym: "Th1 cell differentiation" EXACT [] is_a: VT:0008076 ! CD4-positive T cell development trait [Term] id: VT:0008089 name: T-helper 2 cell quantity namespace: Trait.ontology def: "The proportion or number of the type of T-helper cell whose cytokine production promotes defense against extracellular parasites and humoral immune responses typical of allergy." [CL:0000546, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "helper T cell type 2 cell number" EXACT [] synonym: "helper T lymphocyte type 2 cell number" EXACT [] synonym: "helper T-cell type 2 cell number" EXACT [] synonym: "helper T-lymphocyte type 2 cell number" EXACT [] synonym: "T helper 2 cell number" EXACT [] synonym: "TH2 cell number" EXACT [] is_a: VT:0002434 ! T-helper 2 cell morphology trait is_a: VT:0008073 ! CD4-positive T cell quantity [Term] id: VT:0008092 name: T-helper 2 cell differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which relatively unspecialized cells acquire the specialized features of the type of T-helper cell whose cytokine production promotes defense against extracellular parasites and humoral immune responses typical of allergy." [CL:0000546, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "helper T cell type 2 cell differentiation" EXACT [] synonym: "helper T lymphocyte type 2 cell differentiation" EXACT [] synonym: "helper T-cell type 2 cell differentiation" EXACT [] synonym: "helper T-lymphocyte type 2 cell differentiation" EXACT [] synonym: "T helper 2 cell differentiation" EXACT [] synonym: "TH2 cell differentiation" EXACT [] synonym: "Th2 cell differentiation" EXACT [] is_a: VT:0008076 ! CD4-positive T cell development trait [Term] id: VT:0008093 name: memory B cell quantity namespace: Trait.ontology def: "The proportion or number of distinctly differentiated long-lived B cells that are readily activated upon re-encounter of an antigenic determinant; memory B cells differentiate from antigen-activated B cells which have been selected for expression of higher affinity immunoglobulin." [CL:0000787 "memory B cell", ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "memory B cell number" EXACT [] is_a: VT:0002440 ! memory B cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0008095 name: memory B cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of distinctly differentiated long-lived B cells that are readily activated upon reencounter of an antigenic determinant; memory B cells differentiate from antigen-activated B cells which have been selected for expression of higher affinity immunoglobulin." [CL:0000787, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "memory B cell differentiation" EXACT [] is_a: VT:0002144 ! B cell development trait [Term] id: VT:0008096 name: plasma cell quantity namespace: Trait.ontology def: "The proportion or number of terminally differentiated, post-mitotic, short-lived cells of the B cell lineage devoted to producing large amounts of immunoglobulin." [CL:0000786, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "plasma cell number" EXACT [] synonym: "plasmacyte cell number" EXACT [] is_a: VT:0002439 ! plasma cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0008099 name: plasma cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of terminally differentiated, post-mitotic, short-lived cells of the B cell lineage devoted to producing large amounts of immunoglobulin." [CL:0000786, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "plasma cell differentiation" EXACT [] is_a: VT:0002144 ! B cell development trait [Term] id: VT:0008111 name: granulocyte development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of leukocytes that have abundant granules in the cytoplasm, including basophils, neutrophils, and eosinophils." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "granulocyte differentiation" EXACT [] synonym: "granulopoiesis" EXACT [] is_a: VT:0001601 ! myelopoiesis trait [Term] id: VT:0008112 name: monocyte development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the large, phagocytic mononuclear leukocytes produced in the vertebrate bone marrow and released into the blood." [CL:0000576, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "monocyte differentiation" EXACT [] is_a: VT:0001601 ! myelopoiesis trait [Term] id: VT:0008113 name: macrophage development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the large mononuclear phagocytes which differentiate from monocytes, are typically resident in a particular tissue, and are capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [CL:0000235, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "macrophage differentiation" EXACT [] is_a: VT:0001601 ! myelopoiesis trait [Term] id: VT:0008114 name: Kupffer cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the phagocytic macrophages residing on the luminal surface of the hepatic sinusoids." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0008115 name: dendritic cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of a cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation." [ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "dendritic cell differentiation" EXACT [] synonym: "dendritic cell maturation" EXACT [] is_a: VT:0001601 ! myelopoiesis trait [Term] id: VT:0008117 name: Langerhans cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a stellate dendritic cell of myeloid origin, that appears clear on light microscopy and has a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus." [CL:0000453, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0006173 ! myeloid dendritic cell morphology trait [Term] id: VT:0008119 name: Langerhans cell quantity namespace: Trait.ontology def: "The proportion or number of stellate dendritic cells of myeloid origin, that appear clear on light microscopy and have a dark-staining, indented nucleus and characteristic inclusions (Birbeck granules) in the cytoplasm; Langerhans cells are found principally in the stratum spinosum of the epidermis, but they also occur in other stratified epithelia and have been identified in the lung, lymph nodes, spleen, and thymus." [ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "Langerhams cell number" EXACT [] synonym: "number of Langerhans cells" EXACT [] is_a: VT:0008117 ! Langerhans cell morphology trait [Term] id: VT:0008120 name: myeloid dendritic cell quantity namespace: Trait.ontology def: "The proportion or number of phagocytic cells of the myeloid lineage that capture antigens in the periphery and then migrate to the lymphoid organs and secrete cytokines to initiate immune responses." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:10449155, PMID:9521319] synonym: "myeloid dendritic cell number" EXACT [] is_a: VT:0006173 ! myeloid dendritic cell morphology trait [Term] id: VT:0008123 name: plasmacytoid dendritic cell quantity namespace: Trait.ontology def: "The proportion or number of phagocytic dendritic cells that are morphologically similar to plasma cells, but do not express B lineage markers, and produce large amounts of alpha/beta interferons (IFN-/) in response to viral and bacterial stimuli." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:15596797] synonym: "DC2 cell number" EXACT [] synonym: "lymphoid dendritic cell number" EXACT [] synonym: "PDC cell number" EXACT [] synonym: "pDC cell number" EXACT [] synonym: "plasmacytoid monocytes cell number" EXACT [] synonym: "plasmacytoid T cell number" EXACT [] synonym: "T-associated plasma cells cell number" EXACT [] is_a: VT:0004242 ! plasmacytoid dendritic cell morphology trait [Term] id: VT:0008125 name: dendritic cell quantity namespace: Trait.ontology def: "The proportion or number of cells of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation." [ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "dendritic cell number" EXACT [] is_a: VT:0005461 ! dendritic cell morphology trait [Term] id: VT:0008131 name: Peyer's patch quantity namespace: Trait.ontology def: "The proportion or number of the protruding lymphoid tissue located on the mucosa of the small intestine that is composed of densely packed B cell follicles." [PMID:15841100] synonym: "number of Peyer's patches" EXACT [] is_a: VT:0000696 ! Peyer's patch morphology trait [Term] id: VT:0008134 name: Peyer's patch size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the protruding lymphoid tissue located on the mucosa of the small intestine that is composed of densely packed B cell follicles." [PMID:15841100] is_a: VT:0000696 ! Peyer's patch morphology trait [Term] id: VT:0008164 name: B-1a B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the B-1 B cell subset bearing the CD5 surface marker." [CL:0000820, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:11861604] synonym: "B-1a B lymphocyte morphology trait" EXACT [] synonym: "B-1a B-cell morphology trait" EXACT [] synonym: "B-1a B-lymphocyte morphology trait" EXACT [] synonym: "B1a cell morphology trait" EXACT [] is_a: VT:0004940 ! B-1 B cell morphology trait [Term] id: VT:0008165 name: B-1b B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the B-1 B cell subset not bearing the CD5 surface marker, but having other phenotypic attributes of a B-1 B cell." [CL:0000821, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:11861604] synonym: " B-1b B-cell morphology trait" EXACT [] synonym: "B-1b B lymphocyte morphology trait" EXACT [] synonym: "B-1b B-lymphocyte morphology trait" EXACT [] synonym: "B1b cell morphology trait" EXACT [] is_a: VT:0004940 ! B-1 B cell morphology trait [Term] id: VT:0008166 name: B-2 B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a conventional B cell subject to antigenic stimulation and dependent on T cell help and with a distinct surface marker expression pattern from B-1 B cells." [CL:0000822, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:11861604] synonym: "B-2 B lymphocyte morphology trait" EXACT [] synonym: "B-2 B-cell morphology trait" EXACT [] synonym: "B-2 B-lymphocyte morphology trait" EXACT [] synonym: "B2 cell morphology trait" EXACT [] is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0008167 name: B-1a B cell quantity namespace: Trait.ontology def: "The proportion or number of the B-1 B cell subset bearing the CD5 surface marker." [CL:0000820, PMID:11861604] synonym: "B-1a cell number" EXACT [] synonym: "number of B-1a cells" EXACT [] is_a: VT:0004976 ! B-1 B cell quantity is_a: VT:0008164 ! B-1a B cell morphology trait [Term] id: VT:0008169 name: B-1b B cell quantity namespace: Trait.ontology def: "The proportion or number of the B-1 B cell subset not bearing the CD5 surface marker, but having other phenotypic attributes of a B-1 B cell." [CL:0000821, PMID:11861604] synonym: "B-1b cell number" EXACT [] synonym: "number of B-1b cells" EXACT [] is_a: VT:0004976 ! B-1 B cell quantity is_a: VT:0008165 ! B-1b B cell morphology trait [Term] id: VT:0008171 name: mature B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the mature form of a B cell, a type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex." [CL:0000785, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "mature B lymphocyte morphology trait" EXACT [] synonym: "mature B-cell morphology trait" EXACT [] synonym: "mature B-lymphocyte morphology trait" EXACT [] is_a: VT:0004939 ! B cell morphology trait is_a: VT:0008195 ! antigen presenting cell morphology trait [Term] id: VT:0008172 name: follicular B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a resting mature B cell with distinct phenotypic characteristics (CD23-positive, CD21-positive) found typically in the B cell follicle region of the spleen and lymph nodes." [CL:0000843, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "FOB cell morphology trait" EXACT [] is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0008174 name: follicular B cell quantity namespace: Trait.ontology def: "The proportion or number of resting mature B cells with distinct phenotypic characteristics (CD23-positive, CD21-positive) found typically in the B cell follicle region of the spleen and lymph nodes." [CL:0000843, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "follicular B cell number" EXACT [] is_a: VT:0008172 ! follicular B cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0008176 name: germinal center B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of rapidly cycling, mature B cells which have downregulated IgD expression and exhibit high levels of binding by peanut agglutinin (PNA), and are involved in T-dependent immune responses; germinal center B cells are found typically in the germinal centers of lymph nodes and spleen." [CL:0000844, GO:0002314, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0008178 name: germinal center B cell quantity namespace: Trait.ontology def: "The proportion or number of rapidly cycling mature B cells which have downregulated IgD expression and exhibit high levels of binding by peanut agglutinin (PNA), and are involved in T-dependent immune responses; germinal center B cells are found typically in the germinal centers of lymph nodes and spleen." [CL:0000844, GO:0002314, ISBN:0781735149] synonym: "germinal center B cell number" EXACT [] is_a: VT:0008176 ! germinal center B cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0008180 name: marginal zone B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the CD23-negative, CD21-positive B cells of the marginal zone of the spleen expressing a B cell receptor usually reactive to bacterial cell wall components or senescent self components such as oxidized-LDL." [CL:0000845, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "MZB cell morphology trait" EXACT [] is_a: VT:0002362 ! spleen marginal zone morphology trait is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0008182 name: marginal zone B cell quantity namespace: Trait.ontology def: "The proportion or number of CD23-negative, CD21-positive B cells of the marginal zone of the spleen expressing a B cell receptor usually reactive to bacterial cell wall components or senescent self components such as oxidized-LDL." [CL:0000845, ISBN:0781735149] synonym: "marginal zone B cell number" EXACT [] is_a: VT:0008180 ! marginal zone B cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0008184 name: naive B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a mature B cell which has not yet been activated by antigen." [CL:0000788 "naive B cell", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "naive B lymphocyte morphology trait" EXACT [] is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0008185 name: naive B cell quantity namespace: Trait.ontology def: "The proportion or number of mature B cells which have not yet been activated by antigen." [CL:0000788 "naive B cell", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "naive B cell number" EXACT [] synonym: "number of naive B cells" EXACT [] is_a: VT:0008184 ! naive B cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0008188 name: transitional stage B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of an immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage; transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection." [CL:0000818, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "transitional B cell morphology trait" EXACT [] synonym: "transitional stage B lymphocyte" EXACT [] synonym: "transitional stage B-cell morphology trait" EXACT [] is_a: VT:0005022 ! immature B cell morphology trait [Term] id: VT:0008190 name: transitional stage B cell quantity namespace: Trait.ontology def: "The proportion or number of immature B cells of an intermediate stage between the pre-B cell stage and the mature naive stage; transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection." [CL:0000818, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "T1 B cell number" NARROW [] synonym: "T2 B cell number" NARROW [] synonym: "T3 B cell number" NARROW [] synonym: "transitional B cell number" EXACT [] synonym: "transitional stage B lymphocyte number" EXACT [] synonym: "transitional stage B-cell number" EXACT [] is_a: VT:0008188 ! transitional stage B cell morphology trait is_a: VT:0008215 ! immature B cell quantity [Term] id: VT:0008191 name: follicular B cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in resting mature B cells with distinct phenotypic characteristics (CD23-positive, CD21-positive) found typically in the B cell follicle region of the spleen." [CL:0000843 "follicular B cell", ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0008192 name: germinal center B cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in rapidly cycling mature B cells which have downregulated IgD expression and exhibit high levels of binding by peanut agglutinin (PNA), and are involved in T-dependent immune responses; germinal center B cells are found typically in the germinal centers of lymph nodes." [CL:0000844 "germinal center B cell", GO:0002314, ISBN:0781735149] is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0008193 name: marginal zone B cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in a CD23-negative, CD21-positive B cell of the marginal zone of the spleen expressing a B cell receptor usually reactive to bacterial cell wall components or senescent self components such as oxidized-LDL." [CL:0000845 "marginal zone B cell", ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0008194 name: memory B cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in a distinctly differentiated long-lived B cell that is readily activated upon re-encounter of its antigenic determinant; memory B cells differentiate from antigen-activated B cells which have been selected for expression of higher affinity immunoglobulin." [CL:0000787 "memory B cell", ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0008195 name: antigen presenting cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response." [CL:0000145, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000716 ! immune system cell morphology trait [Term] id: VT:0008196 name: follicular dendritic cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a cell with extensive dendritic processes found in the B cell areas (primary follicles and germinal centers) of lymphoid tissue; follicular dendritic cells have Fc receptors and C3b receptors, and hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response." [CL:0000442, MeSH:D020566 "Dendritic cells, follicular", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Follicular dendritic cells are a distinct population from other dendritic cells associated with T cells. Follicular dendritic cells have Fc receptors and C3b receptors, but unlike other dendritic cells, they do not process or present antigen in a way that allows recognition by T cells. Instead, they hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response. They are not derived from the hematopoietic lineage. Due to its unique lineage and distinct function (B cell vs. T cell presentation), this is NOT a type of dendritic cell. is_a: VT:0000716 ! immune system cell morphology trait [Term] id: VT:0008197 name: follicular dendritic cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in a cell with extensive dendritic processes found in the B cell areas (primary follicles and germinal centers) of lymphoid tissue; follicular dendritic cells have Fc receptors and C3b receptors, and hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response." [CL:0000442, MeSH:D020566 "dendritic cells, follicular", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Annotations to this cell type have been erroneously made to dendritic cell morphology trait. These are unrelated to the dendritic cell associated with T cells. Follicular dendritic cells have Fc receptors and C3b receptors, but unlike other dendritic cells, they do not process or present antigen in a way that allows recognition by T cells. Instead, they hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response. They are not derived from the hematopoietic lineage. Due to its unique lineage and distinct function (B cell vs. T cell presentation), this is NOT a type of dendritic cell. is_a: VT:0001819 ! immune system cell physiology trait [Term] id: VT:0008198 name: follicular dendritic cell antigen presentation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of follicular dendritic cells to process and present antigen to B lymphocytes." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0001835 ! antigen presentation trait is_a: VT:0008197 ! follicular dendritic cell physiology trait [Term] id: VT:0008200 name: follicular dendritic cell quantity namespace: Trait.ontology def: "The proportion or number of cells with extensive dendritic processes found in the B cell areas (primary follicles and germinal centers) of lymphoid tissue; follicular dendritic cells have Fc receptors and C3b receptors, and hold antigen in the form of immune complexes on their surfaces for long periods and can present antigen to B cells during an immune response." [CL:0000442, MeSH:D020566 "dendritic cells, follicular"] synonym: "number of follicular dendritic cells" EXACT [] is_a: VT:0008196 ! follicular dendritic cell morphology trait is_a: VT:0010191 ! immune system cell quantity [Term] id: VT:0008207 name: B-2 B cell quantity namespace: Trait.ontology def: "The proportion or number of conventional B cells subject to antigenic stimulation and dependent on T cell help and with a distinct surface marker expression pattern from B-1 B cells." [CL:0000822, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:11861604] synonym: "B-2 B cell number" EXACT [] synonym: "B-2 cell number" EXACT [] synonym: "number of B-2 cells" EXACT [] is_a: VT:0008166 ! B-2 B cell morphology trait is_a: VT:0008211 ! mature B cell quantity [Term] id: VT:0008208 name: pro-B cell quantity namespace: Trait.ontology def: "The proportion or number of the progenitor cells of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but are not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [CL:0000826, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "number of pro-B cells" EXACT [] synonym: "pro-B lymphocyte cell number" EXACT [] synonym: "reduced pro-B cell number" EXACT [] is_a: VT:0005432 ! pro-B cell morphology trait [Term] id: VT:0008209 name: pre-B cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the B lymphocyte lineage that have undergone VDJ rearrangement of the immunoglobulin heavy chain and are in the process of V-J rearrangement of the light chain: these cells express mu heavy chain on the cell surface." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "number of pre-B cells" EXACT [] synonym: "pre-B cell number" EXACT [] synonym: "pre-B lymphocyte cell number" EXACT [] is_a: VT:0002403 ! pre-B cell morphology trait is_a: VT:0008215 ! immature B cell quantity [Term] id: VT:0008211 name: mature B cell quantity namespace: Trait.ontology def: "The proportion or number of the mature form of B cells, a type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex." [CL:0000785 "mature B cell", ISBN:0781735149] synonym: "number of mature B cells" EXACT [] synonym: "number of mature B lymphocytes" EXACT [] synonym: "number of mature B-cells" EXACT [] synonym: "number of mature B-lymphocytes" EXACT [] synonym: "reduced mature B cell number" EXACT [] is_a: VT:0002458 ! B cell quantity is_a: VT:0008171 ! mature B cell morphology trait [Term] id: VT:0008215 name: immature B cell quantity namespace: Trait.ontology def: "The proportion or number of the cells of the B lymphocyte lineage that have undergone VDJ rearrangement of the heavy chain and V-J rearrangement of the light chain; these cells express IgM on the cell surface but have not yet been selected for self-reactivity." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] synonym: "number of immature B cells" EXACT [] synonym: "number of immature B lymphocytes" EXACT [] synonym: "number of immature B-cells" EXACT [] synonym: "number of immature B-lymphocytes" EXACT [] is_a: VT:0002458 ! B cell quantity is_a: VT:0005022 ! immature B cell morphology trait [Term] id: VT:0008217 name: B cell activation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the change in morphology and behavior of a mature or immature B cell during an immune response, resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific." [GO:0002312, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002144 ! B cell development trait is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0008233 name: pro-B cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the progenitor cells of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but are not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [CL:0000826, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "pro-B cell differentiation" EXACT [] is_a: VT:0002144 ! B cell development trait [Term] id: VT:0008240 name: spleen marginal zone macrophage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells present in the splenic marginal zone that are involved in the recognition and clearance of material, such as pathogen-derived material, from the splenic circulation." [PMID:16322748] comment: Spleen marginal zone macrophage cells express the cell surface protein CD209b (also called Signr1), which is often detected with the ER-TR9 antibody. synonym: "ER-TR9 positive cell morphology trait" EXACT [] synonym: "splenic marginal zone macrophage morphology trait" EXACT [] is_a: VT:0002362 ! spleen marginal zone morphology trait is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0008241 name: metallophilic macrophage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the macrophage cells that surround the white pulp of the spleen, adjacent to the marginal sinus." [PMID:16322748] comment: Metallophillic macrophage cells express the cell surface protein Siglec1 (also called CD169 or sialoadhesin), which is often detected with the MOMA-1 antibody. synonym: "marginal metallophilic macrophage morphology trait" EXACT [] synonym: "MOMA-1 positive cell morphology trait" EXACT [] synonym: "splenic marginal metallophilic macrophage morphology trait" EXACT [] is_a: VT:0002357 ! spleen white pulp morphology trait is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0008242 name: perivascular macrophage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of macrophages that line the small blood vessels." [PMID:16322748] is_a: VT:0001614 ! blood vessel morphology trait is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0008244 name: peritoneal macrophage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a mononuclear phagocyte that develops from bone marrow precursors but is resident in the peritoneum." [CL:0000581, MeSH:D017737 "macrophages, peritoneal"] is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0008245 name: alveolar macrophage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the round, granular, mononuclear phagocytes found in the alveoli of the lungs which ingest small inhaled particles resulting in degradation and presentation of the antigen to immunocompetent cells." [CL:0000583, MeSH:D016676 "macrophages, alveolar"] is_a: VT:0002270 ! respiratory alveoli morphology trait is_a: VT:0002446 ! macrophage morphology trait [Term] id: VT:0008246 name: leukocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of nucleated cells of the myeloid or lymphoid lineages, found in blood or other tissue." [CL:0000738, MeSH:D007962 "Leukocytes"] synonym: "WBC morphology trait" EXACT [] synonym: "white blood cell morphology trait" EXACT [] is_a: VT:0000716 ! immune system cell morphology trait is_a: VT:0002429 ! blood cell morphology trait [Term] id: VT:0008248 name: mononuclear phagocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a vertebrate phagocyte with a single nucleus." [CL:0000113 "mononuclear phagocyte"] is_a: VT:0008251 ! phagocyte morphology trait [Term] id: VT:0008249 name: common lymphoid progenitor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a progenitor cell committed to the lymphoid lineage." [CL:0000051 "common lymphoid progenitor", PMID:10407577] synonym: "CLP morphology trait" EXACT [] synonym: "common lymphocyte progenitor cell morphology trait" EXACT [] synonym: "common lymphocyte progenitor morphology trait" EXACT [] synonym: "common lymphoid progenitor cell morphology trait" EXACT [] synonym: "lymphoid stem cell morphology trait" EXACT [] is_a: VT:0002398 ! bone marrow cell morphology trait [Term] id: VT:0008251 name: phagocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of cells capable of ingesting particulate matter via phagocytosis." [CL:0000234, ISBN:0721601464] synonym: "phagocytic cell morphology trait" EXACT [] is_a: VT:0008246 ! leukocyte morphology trait [Term] id: VT:0008252 name: multinucleated phagocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a phagocyte formed by the fusion of mononuclear phagocytes." [CL:0000783 "multinucleated phagocyte"] is_a: VT:0008251 ! phagocyte morphology trait [Term] id: VT:0008343 name: gamma-delta T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of an immature or mature T cell expressing a gamma-delta T cell receptor complex." [CL:0000798 "gamma-delta T cell", ISBN:0781735149] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. synonym: "gamma-delta T lymphocyte morphology trait" EXACT [] synonym: "gamma-delta T-cell morphology trait" EXACT [] synonym: "gamma-delta T-lymphocyte morphology trait" EXACT [] synonym: "TCRgd cell morphology trait" EXACT [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0008344 name: mature gamma-delta T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a mature T cell expressing a gamma-delta T cell receptor complex." [CL:0000798, ISBN:0781735149] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. synonym: "mature gamma-delta T lymphocyte morphology trait" EXACT [] synonym: "mature gamma-delta T-cell morphology trait" EXACT [] synonym: "mature gamma-delta T-lymphocyte morphology trait" EXACT [] is_a: VT:0008343 ! gamma-delta T cell morphology trait [Term] id: VT:0008345 name: gamma-delta T cell quantity namespace: Trait.ontology def: "The proportion or number of immature or mature T cells expressing a gamma-delta T cell receptor complex." [CL:0000798 "gamma-delta T cell", ISBN:0781735149] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. synonym: "gamma-delta T lymphocyte number" EXACT [] synonym: "gamma-delta T-cell number" EXACT [] synonym: "gamma-delta T-lymphocyte number" EXACT [] is_a: VT:0006387 ! T cell quantity is_a: VT:0008343 ! gamma-delta T cell morphology trait [Term] id: VT:0008349 name: gamma-delta intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a gamma-delta T cell present in columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [CL:0000801 "gamma-delta intraepithelial T cell", ISBN:0781735149] synonym: "gamma-delta intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "gamma-delta intraepithelial T-cell morphology trait" EXACT [] synonym: "gamma-delta intraepithelial T-lymphocyte morphology trait" EXACT [] synonym: "IEL morphology trait" BROAD [] is_a: VT:0008343 ! gamma-delta T cell morphology trait is_a: VT:0008894 ! intraepithelial T cell morphology trait [Term] id: VT:0008351 name: gamma-delta intraepithelial T cell quantity namespace: Trait.ontology def: "The proportion or number of gamma-delta T cells present in columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [ISBN:0781735149] synonym: "gamma-delta intraepithelial T lymphocyte number" EXACT [] synonym: "gamma-delta intraepithelial T-cell number" EXACT [] synonym: "gamma-delta intraepithelial T-lymphocyte number" EXACT [] synonym: "IEL number" BROAD [] synonym: "intraepithelial lymphocyte number" BROAD [] is_a: VT:0008345 ! gamma-delta T cell quantity is_a: VT:0008349 ! gamma-delta intraepithelial T cell morphology trait is_a: VT:0008895 ! intraepithelial T cell quantity [Term] id: VT:0008354 name: mature gamma-delta T cell quantity namespace: Trait.ontology def: "The proportion or number of mature T cells expressing a gamma-delta T cell receptor complex." [CL:0000798 "gamma-delta T cell", ISBN:0781735149] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. synonym: "mature gamma-delta T lymphocyte number" EXACT [] synonym: "mature gamma-delta T-cell number" EXACT [] synonym: "mature gamma-delta T-lymphocyte number" EXACT [] is_a: VT:0008344 ! mature gamma-delta T cell morphology trait is_a: VT:0008345 ! gamma-delta T cell quantity [Term] id: VT:0008356 name: gamma-delta T cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of T cells expressing a gamma-delta T cell receptor complex, and/or accumulation of gamma-delta T cell precursors." [CL:0000798, ISBN:0781735149] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. synonym: "gamma-delta T cell differentiation" EXACT [] synonym: "gamma-delta T lymphocyte differentiation" EXACT [] synonym: "gamma-delta T-cell differentiation" EXACT [] synonym: "gamma-delta T-lymphocyte differentiation" EXACT [] is_a: VT:0002145 ! T cell development trait [Term] id: VT:0008357 name: CD4-positive, gamma-delta intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD4-positive, gamma-delta T cell of the columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [CL:0000803, ISBN:0781735149] synonym: "CD4-positive, gamma-delta intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "CD4-positive, gamma-delta intraepithelial T-cell morphology trait" EXACT [] synonym: "CD4-positive, gamma-delta intraepithelial T-lymphocyte morphology trait" EXACT [] synonym: "IEL morphology trait" BROAD [] synonym: "intraepithelial lymphocyte morphology trait" BROAD [] is_a: VT:0008349 ! gamma-delta intraepithelial T cell morphology trait [Term] id: VT:0008361 name: CD8-positive, gamma-delta intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD8-positive, gamma-delta T cell of the columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [CL:0000803, ISBN:0781735149] synonym: "CD8-positive, gamma-delta intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "CD8-positive, gamma-delta intraepithelial T-cell morphology trait" EXACT [] synonym: "CD8-positive, gamma-delta intraepithelial T-lymphocyte morphology trait" EXACT [] synonym: "IEL morphology trait" BROAD [] synonym: "intraepithelial lymphocyte morphology trait" BROAD [] is_a: VT:0008349 ! gamma-delta intraepithelial T cell morphology trait [Term] id: VT:0008397 name: CD4-positive, CD25-positive, alpha-beta regulatory T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD4-positive, CD25-positive, alpha-beta T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release." [CL:0000792 "CD4-positive, CD25-positive, alpha-beta regulatory T cell", ISBN:0781735149] synonym: "CD4-positive, CD25-positive, alpha-beta regulatory T lymphocyte morphology trait" EXACT [] synonym: "CD4-positive, CD25-positive, alpha-beta regulatory T-cell morphology trait" EXACT [] synonym: "CD4-positive, CD25-positive, alpha-beta regulatory T-lymphocyte morphology trait" EXACT [] synonym: "CD4-positive, CD25-positive, alpha-beta Treg morphology trait" EXACT [] synonym: "suppressor T cell morphology trait" BROAD [] synonym: "suppressor T lymphocyte morphology trait" BROAD [] synonym: "suppressor T-cell morphology trait" BROAD [] synonym: "suppressor T-lymphocyte morphology trait" BROAD [] is_a: VT:0002432 ! CD4-positive T cell morphology trait is_a: VT:0004941 ! regulatory T cell morphology trait [Term] id: VT:0008398 name: CD8-positive, alpha-beta regulatory T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD8-positive, alpha-beta T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release." [CL:0000795 "CD8-positive, alpha-beta regulatory T cell", ISBN:0781735149] synonym: "CD8-positive, alpha-beta regulatory T lymphocyte morphology trait" EXACT [] synonym: "CD8-positive, alpha-beta regulatory T-cell morphology trait" EXACT [] synonym: "CD8-positive, alpha-beta regulatory T-lymphocyte morphology trait" EXACT [] synonym: "CD8-positive, alpha-beta Treg morphology trait" EXACT [] synonym: "suppressor T cell morphology trait" BROAD [] synonym: "suppressor T lymphocyte morphology trait" BROAD [] synonym: "suppressor T-cell morphology trait" BROAD [] synonym: "suppressor T-lymphocyte morphology trait" BROAD [] is_a: VT:0004941 ! regulatory T cell morphology trait is_a: VT:0005010 ! CD8-positive T cell morphology trait [Term] id: VT:0008399 name: alpha-beta intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of an alpha-beta T cell present in columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [CL:0000797 "alpha-beta intraepithelial T cell", ISBN:0781735149] synonym: "alpha-beta intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "alpha-beta intraepithelial T-cell morphology trait" EXACT [] synonym: "alpha-beta intraepithelial T-lymphocyte morphology trait" EXACT [] synonym: "IEL morphology trait" BROAD [] synonym: "intraepithelial lymphocyte morphology trait" BROAD [] is_a: VT:0002435 ! effector T cell morphology trait is_a: VT:0008894 ! intraepithelial T cell morphology trait [Term] id: VT:0008400 name: CD4-positive, alpha-beta intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD4-positive, alpha-beta T cell of the columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [CL:0000793 "CD4-positive, alpha-beta intraepithelial T cell", ISBN:0781735149] synonym: "CD4-positive, alpha-beta intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "CD4-positive, alpha-beta intraepithelial T-cell morphology trait" EXACT [] synonym: "CD4-positive, alpha-beta intraepithelial T-lymphocyte morphology trait" EXACT [] synonym: "IEL morphology trait" BROAD [] synonym: "intraepithelial lymphocyte morphology trait" BROAD [] is_a: VT:0002432 ! CD4-positive T cell morphology trait is_a: VT:0008399 ! alpha-beta intraepithelial T cell morphology trait [Term] id: VT:0008401 name: CD8-positive, alpha-beta intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD8-positive, alpha-beta T cell of the columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [CL:0000796 "CD8-positive, alpha-beta intraepithelial T cell", ISBN:0781735149] synonym: "CD8-positive, alpha-beta intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "CD8-positive, alpha-beta intraepithelial T-cell morphology trait" EXACT [] synonym: "CD8-positive, alpha-beta intraepithelial T-lymphocyte morphology trait" EXACT [] synonym: "IEL morphology trait" BROAD [] is_a: VT:0005010 ! CD8-positive T cell morphology trait is_a: VT:0008399 ! alpha-beta intraepithelial T cell morphology trait [Term] id: VT:0008463 name: peripheral lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of any of the lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "external lymph node morphology trait" EXACT [] is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0008466 name: mesenteric lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lymph nodes located in the mesentary, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000701 ! lymph node size trait is_a: VT:0005232 ! mesenteric lymph node morphology trait [Term] id: VT:0008470 name: spleen B cell follicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur." [PMID:17495967] synonym: "spleen B lymphocyte follicle morphology trait" EXACT [] synonym: "splenic B cell follicle morphology trait" EXACT [] is_a: VT:0002357 ! spleen white pulp morphology trait [Term] id: VT:0008471 name: spleen primary B follicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp." [PMID:17495967] synonym: "splenic primary B cell morphology trait" EXACT [] is_a: VT:0008470 ! spleen B cell follicle morphology trait [Term] id: VT:0008472 name: spleen secondary B follicle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp." [PMID:17495967] synonym: "spleen secondary follicle morphology trait" EXACT [] synonym: "splenic secondary B cell follicle morphology trait" EXACT [] is_a: VT:0008470 ! spleen B cell follicle morphology trait [Term] id: VT:0008473 name: spleen follicular dendritic cell network morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: The follicular dendritic cell network is often visualized by using the monoclonal antibody FDC-M2. synonym: "FDC network morphology trait" EXACT [] synonym: "FDCN morphology trait" EXACT [] synonym: "spleen FDC network morphology trait" EXACT [] synonym: "splenic follicular dendritic cell network morphology trait" EXACT [] is_a: VT:0008470 ! spleen B cell follicle morphology trait [Term] id: VT:0008482 name: spleen germinal center quantity namespace: Trait.ontology def: "The proportion or number of spleen secondary B follicles where rapid B-cell proliferation, somatic hypermutation, and selection for antigen binding occur." [PMID:17495967] comment: Germinal centers are often identified by the binding of peanut agglutinin (PNA). synonym: "spleen follicle center number" EXACT [] synonym: "spleen follicle centre number" EXACT [] synonym: "spleen GC number" EXACT [] synonym: "splenic germinal center number" EXACT [] is_a: VT:0002359 ! spleen germinal center morphology trait [Term] id: VT:0008484 name: spleen germinal center size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the spleen secondary B follicles where rapid B-cell proliferation, somatic hypermutation, and selection for antigen binding occur." [PMID:17495967] comment: Germinal centers are often identified by the binding of peanut agglutinin (PNA). synonym: "spleen follicle center size trait" EXACT [] synonym: "spleen follicle centre size trait" EXACT [] synonym: "spleen GC size trait" EXACT [] synonym: "splenic germinal center size trait" EXACT [] is_a: VT:0002359 ! spleen germinal center morphology trait [Term] id: VT:0008495 name: blood immunoglobulin G1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of immunoglobulin class G1." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "IgG1 concentration" RELATED [] synonym: "IgG1 level" RELATED [] synonym: "plasma immunoglobulin G1 amount" NARROW [] synonym: "serum level of immunoglobulin G1" RELATED [] is_a: VT:0001805 ! blood immunoglobulin G amount [Term] id: VT:0008496 name: blood immunoglobulin G2a amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of immunoglobulin class G2a." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "IgG2a concentration" RELATED [] synonym: "IgG2a level" RELATED [] synonym: "plasma immunoglobulin G2a amount" NARROW [] synonym: "serum level of immunoglobulin G2a" RELATED [] is_a: VT:0001805 ! blood immunoglobulin G amount [Term] id: VT:0008497 name: blood immunoglobulin G2b amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of immunoglobulin class G2b." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "IgG2b concentration" RELATED [] synonym: "IgG2b level" RELATED [] synonym: "plasma immunoglobulin G2b amount" NARROW [] synonym: "serum level of immunoglobulin G2b" RELATED [] is_a: VT:0001805 ! blood immunoglobulin G amount [Term] id: VT:0008498 name: blood immunoglobulin G3 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of immunoglobulin class G3." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "IgG3 concentration" RELATED [] synonym: "IgG3 level" RELATED [] synonym: "plasma immunoglobulin G3 amount" NARROW [] synonym: "serum level of immunoglobulin G3" RELATED [] is_a: VT:0001805 ! blood immunoglobulin G amount [Term] id: VT:0008522 name: lymph node germinal center morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the area of the lymph node secondary follicle where B cells are stimulated by antigens and helper T cells are stimulated to generate memory cells." [MeSH:D018858 "germinal center", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Germinal centers are often identified by the binding of peanut agglutinin (PNA). is_a: VT:0002346 ! lymph node secondary follicle morphology trait [Term] id: VT:0008542 name: cervical lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lymph nodes found near the neck and shoulders." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0000701 ! lymph node size trait is_a: VT:0002351 ! cervical lymph node morphology trait [Term] id: VT:0008548 name: blood interferon amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of proteins secreted by vertebrate cells in response to a wide variety of inducers; they confer resistance against many different viruses, inhibit proliferation of normal and malignant cells, impede multiplication of intracellular parasites, enhance macrophage and granulocyte phagocytosis, augment natural killer cell activity, and show several other immunomodulatory functions." [MeSH:D007372 "Interferons"] synonym: "blood interferon level" RELATED [] synonym: "circulating IFN level" RELATED [] synonym: "circulating interferon level" RELATED [] is_a: VT:0005416 ! blood protein amount is_a: VT:0008750 ! interferon amount [Term] id: VT:0008549 name: blood interferon-alpha amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of one of the type I interferons produced by peripheral blood leukocytes or lymphoblastoid cells that has antiviral activity and activates natural killer cells and B cells." [MeSH:D016898 "Interferon-alpha"] synonym: "blood interferon-alpha level" RELATED [] synonym: "circulating alpha-IFN level" RELATED [] synonym: "circulating alpha-Interferon level" RELATED [] synonym: "circulating IFN-alpha level" RELATED [] synonym: "circulating interferon-alpha level" RELATED [] is_a: VT:0008548 ! blood interferon amount [Term] id: VT:0008550 name: blood interferon-beta amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of one of the type I interferons produced by fibroblasts in response to stimulation by live or inactivated virus or by double-stranded RNA with antiviral, antiproliferative, and immunomodulating activity." [MeSH:D016899 "Interferon-beta"] synonym: "blood interferon-beta level" RELATED [] synonym: "circulating beta-IFN level" RELATED [] synonym: "circulating beta-interferon level" RELATED [] synonym: "circulating IFN-beta level" RELATED [] is_a: VT:0008548 ! blood interferon amount [Term] id: VT:0008551 name: blood interferon-gamma amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the major interferon produced by mitogenically or antigenically stimulated lymphocytes that is involved in immunoregulation." [MeSH:D007371 "interferon-gamma"] synonym: "blood interferon-gamma level" RELATED [] synonym: "circulating gamma-IFN level" RELATED [] synonym: "circulating gamma-interferon level" RELATED [] synonym: "circulating IFN-gamma level" RELATED [] synonym: "circulating interferon type II level" RELATED [] synonym: "circulating interferon-gamma level" RELATED [] is_a: VT:0008548 ! blood interferon amount [Term] id: VT:0008552 name: blood tumor necrosis factor amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a serum glycoprotein produced by activated macrophages and NK cells and involved in initiating local inflammatory responses, particularly by its action on the endothelium of local blood vessels; its actions result in increased vascular permeability and induction of expression of adhesion molecules on the endothelium." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MeSH:D014409 "Tumor Necrosis Factor-alpha"] synonym: "blood TNF amount" EXACT [] synonym: "blood TNFA amount" EXACT [] synonym: "circulating cachectin level" RELATED [] synonym: "circulating TNF level" RELATED [] synonym: "circulating TNFA level" RELATED [] synonym: "circulating tumor necrosis factor alpha level" RELATED [] synonym: "circulating tumor necrosis factor level" RELATED [] is_a: VT:0005416 ! blood protein amount is_a: VT:0008752 ! tumor necrosis factor amount [Term] id: VT:0008555 name: interferon secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of proteins secreted by vertebrate cells in response to a wide variety of inducers; they confer resistance against many different viruses, inhibit proliferation of normal and malignant cells, impede multiplication of intracellular parasites, enhance macrophage and granulocyte phagocytosis, augment natural killer cell activity, and show several other immunomodulatory functions." [MeSH:D007372 "interferons"] synonym: "IFN secretion" EXACT [] is_a: VT:0003009 ! cytokine secretion trait [Term] id: VT:0008556 name: tumor necrosis factor secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a serum glycoprotein produced by activated macrophages and NK cells and involved in initiating local inflammatory responses, particularly by its action on the endothelium of local blood vessels; its actions result in increased vascular permeability and induction of expression of adhesion molecules on the endothelium." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MeSH:D014409 "tumor necrosis factor-alpha"] synonym: "cachectin secretion" EXACT [] synonym: "TNF secretion" EXACT [] synonym: "TNFA secretion" EXACT [] synonym: "tumor necrosis factor alpha secretion" EXACT [] synonym: "tumor necrosis factor-alpha secretion" EXACT [] is_a: VT:0003009 ! cytokine secretion trait [Term] id: VT:0008557 name: interferon-alpha secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of one of the type I interferons produced by peripheral blood leukocytes or lymphoblastoid cells that has antiviral activity and activates natural killer cells and B cells." [MeSH:D016898 "interferon-alpha"] synonym: "alpha-IFN secretion" EXACT [] synonym: "alpha-Interferon secretion" EXACT [] synonym: "IFN-alpha secretion" EXACT [] is_a: VT:0008555 ! interferon secretion trait [Term] id: VT:0008558 name: interferon-beta secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of one of the type I interferons produced by fibroblasts in response to stimulation by live or inactivated virus or by double-stranded RNA with antiviral, antiproliferative, and immunomodulating activity." [MeSH:D016899 "interferon-beta"] synonym: "beta-IFN secretion" EXACT [] synonym: "beta-interferon secretion" EXACT [] synonym: "IFN-beta secretion" EXACT [] is_a: VT:0008555 ! interferon secretion trait [Term] id: VT:0008559 name: interferon-gamma secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of the major interferon produced by mitogenically or antigenically stimulated lymphocytes that is involved in immunoregulation." [MeSH:D007371 "interferon-gamma"] synonym: "gamma-IFN secretion" EXACT [] synonym: "gamma-interferon secretion" EXACT [] synonym: "IFN-gamma secretion" EXACT [] synonym: "interferon type II secretion" EXACT [] is_a: VT:0008555 ! interferon secretion trait [Term] id: VT:0008568 name: interleukin secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of soluble factors which stimulate growth-related activities of leukocytes and other cell types, that can act to enhance cell proliferation and differentiation, DNA synthesis, secretion of other biologically active molecules and responses to immune and inflammatory stimuli." [MeSH:D007378 "interleukins"] is_a: VT:0003009 ! cytokine secretion trait [Term] id: VT:0008588 name: blood interleukin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of soluble factors which stimulate growth-related activities of leukocytes as well as other cell types; they enhance cell proliferation and differentiation, DNA synthesis, secretion of other biologically active molecules and responses to immune and inflammatory stimuli." [MeSH:D007378 "Interleukins"] synonym: "circulating IL level" RELATED [] synonym: "circulating interleukin level" RELATED [] is_a: VT:0005416 ! blood protein amount is_a: VT:0008751 ! interleukin amount [Term] id: VT:0008589 name: blood interleukin-1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a soluble factor produced by monocytes, macrophages and other cells, which activates T-lymphocytes and potentiates their response to mitogens or antigens." [MeSH:D007375 "Interleukin-1"] synonym: "circulating epidermal cell derived thymocyte-activating factor level" RELATED [] synonym: "circulating IL-1 level" RELATED [] synonym: "circulating interleukin I level" RELATED [] synonym: "circulating lymphocyte-activating factor level" RELATED [] synonym: "circulating macrophage cell factor level" RELATED [] synonym: "circulating T helper factor level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008590 name: blood interleukin-10 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine produced by a variety of cell types, including T-cells, monocytes, dendritic cells and epithelial cells that exerts a variety of effects on immunoregulation and inflammation." [MeSH:D016753 "interleukin-10"] synonym: "circulating CSIF-10 level" RELATED [] synonym: "circulating cytokine synthesis inhibitory factor level" RELATED [] synonym: "circulating IL-10 level" RELATED [] synonym: "circulating IL10 level" RELATED [] synonym: "circulating interleukin-10 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008595 name: blood interleukin-6 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine that stimulates the growth and differentiation of B-cells and is also a growth factor for hybridomas and plasmacytomas, and is produced by many different cells including T-cells, monocytes and fibroblasts." [MeSH:D015850 "interleukin-6"] synonym: "circulating B cell stimulatory factor-2 level" RELATED [] synonym: "circulating B-cell differentiation factor level" RELATED [] synonym: "circulating B-cell differentiation factor-2 level" RELATED [] synonym: "circulating B-cell stimulatory factor 2 level" RELATED [] synonym: "circulating B-cell stimulatory factor-2 level" RELATED [] synonym: "circulating BSF-2 level" RELATED [] synonym: "circulating hepatocyte-stimulating factor level" RELATED [] synonym: "circulating hybridoma growth factor level" RELATED [] synonym: "circulating IFN-beta 2 level" RELATED [] synonym: "circulating IL-6 level" RELATED [] synonym: "circulating IL6 level" RELATED [] synonym: "circulating interleukin-6 level" RELATED [] synonym: "circulating MGI-2 level" RELATED [] synonym: "circulating myeloid differentiation-inducing protein level" RELATED [] synonym: "circulating plasmacytoma growth factor level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008598 name: blood interleukin-2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a soluble substance elaborated by antigen- or mitogen-stimulated T-cells which induces DNA synthesis in naive lymphocytes." [MeSH:D007376 "interleukin-2"] synonym: "circulating IL-2 level" RELATED [] synonym: "circulating IL2 level" RELATED [] synonym: "circulating interleukin II level" RELATED [] synonym: "circulating interleukin-2 level" RELATED [] synonym: "circulating interleukine 2 level" RELATED [] synonym: "circulating lymphocyte mitogenic factor level" RELATED [] synonym: "circulating Ro-23-6019 level" RELATED [] synonym: "circulating Ro-236019 level" RELATED [] synonym: "circulating RU 49637 level" RELATED [] synonym: "circulating RU-49637 level" RELATED [] synonym: "circulating T-cell growth factor level" RELATED [] synonym: "circulating T-cell stimulating factor level" RELATED [] synonym: "circulating TCGF level" RELATED [] synonym: "circulating thymocyte stimulating factor level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008601 name: blood interleukin-4 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a soluble factor produced by activated T-cells that induces the expression of MHC class II genes and FC receptors on B-cells and causes their proliferation and differentiation; it also acts on T-cells, mast cells and several other hematopoietic lineage cells." [MeSH:D015847 "interleukin-4"] synonym: "circulating B cell stimulatory factor-1 level" RELATED [] synonym: "circulating B-cell growth factor-1 level" RELATED [] synonym: "circulating B-cell growth factor-I level" RELATED [] synonym: "circulating B-cell proliferating factor level" RELATED [] synonym: "circulating B-cell stimulating factor-1 level" RELATED [] synonym: "circulating B-cell stimulatory factor 1 level" RELATED [] synonym: "circulating B-cell stimulatory factor-1 level" RELATED [] synonym: "circulating BCGF-1 level" RELATED [] synonym: "circulating Binetrakin level" RELATED [] synonym: "circulating BSF-1 level" RELATED [] synonym: "circulating IL-4 level" RELATED [] synonym: "circulating IL4 level" RELATED [] synonym: "circulating interleukin-4 level" RELATED [] synonym: "circulating mast cell growth factor-2 level" RELATED [] synonym: "circulating MCGF-2 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008604 name: blood interleukin-7 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine produced by bone marrow stromal cells that promotes the growth of B-cell precursors and is co-mitogenic with interleukin-2 for mature T-cell activation." [MeSH:D015851 "interleukin-7"] synonym: "circulating IL-7 level" RELATED [] synonym: "circulating IL7 level" RELATED [] synonym: "circulating interleukin-7 level" RELATED [] synonym: "circulating lymphopoietin-1 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008607 name: blood interleukin-13 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine synthesized by T-cells that produces proliferation, immunoglobulin isotype switching, and immunoglobulin production by immature B-cells, and appears to play a role in regulating inflammatory and immune responses." [MeSH:D018793 "interleukin-13"] synonym: "circulating IL-13 level" RELATED [] synonym: "circulating IL13 level" RELATED [] synonym: "circulating interleukin-13 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008610 name: blood interleukin-15 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine that stimulates the proliferation of T-cells and can induce proliferation and differentiation of B-cells; interleukin-15 shares biological activities with interleukin-2." [MeSH:D019409 "interleukin-15"] synonym: "circulating IL-15 level" RELATED [] synonym: "circulating IL15 level" RELATED [] synonym: "circulating interleukin-15 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008613 name: blood interleukin-17 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a proinflammatory cytokine produced primarily by T-cells or their precursors." [MeSH:D020381 "interleukin-17"] comment: Several subtypes of interleukin-17 have been identified, each of which is a product of a unique gene. synonym: "circulating CTLA-8 level" RELATED [] synonym: "circulating CTLA8 level" RELATED [] synonym: "circulating cytokine CX2 level" RELATED [] synonym: "circulating cytotoxic T lymphocyte-associated antigen 8 level" RELATED [] synonym: "circulating IL-17 level" RELATED [] synonym: "circulating IL17 level" RELATED [] synonym: "circulating interleukin-17 level" RELATED [] synonym: "circulating ML-1 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008616 name: blood interleukin-12 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a heterodimeric cytokine that plays a role in innate and adaptive immune responses; it is produced by dendritic cells, macrophages and a variety of other immune cells and plays a role in the stimulation of interferon-gamma production by T-cells and natural killer cells." [MeSH:D018664 "interleukin-12"] comment: Interleukin-12 is a 70 kDa protein that is composed of covalently linked 40 kDa (IL-12b) and 35 kDa (IL-12a) subunits. The 40 kDa subunit (IL-12b) also is a component of interleukin-23 together with the IL-23a ( 19kDa) chain. synonym: "circulating cytotoxic lymphocyte maturation factor level" RELATED [] synonym: "circulating IL-12 level" RELATED [] synonym: "circulating IL-12 p70 level" RELATED [] synonym: "circulating IL12 level" RELATED [] synonym: "circulating interleukin-12 level" RELATED [] synonym: "circulating interleukin-12 p70 level" RELATED [] synonym: "circulating natural killer cell stimulatory factor level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008619 name: blood interleukin-23 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a heterodimeric cytokine that plays a role in innate and adaptive immune responses; it is produced by dendritic cells, macrophages and a variety of other immune cells." [MeSH:D053759 "interleukin-23"] comment: Interleukin-23 is comprised of a unique 19 kDa subunit (IL-23a) and 40 kDa subunit (IL-12b) that is shared with interleukin-12. synonym: "circulating IL-23 level" RELATED [] synonym: "circulating IL23 level" RELATED [] synonym: "circulating interleukin-23 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008622 name: blood interleukin-3 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a multi-lineage cell growth factor secreted by lymphocytes, epithelial cells and astrocytes which stimulates clonal proliferation and differentiation of various types of blood and tissue cells." [MeSH:D007377 "interleukin-3"] synonym: "circulating colony-stimulating factor 2 alpha level" RELATED [] synonym: "circulating eosinophil-mast cell growth-factor level" RELATED [] synonym: "circulating erythrocyte burst-promoting factor level" RELATED [] synonym: "circulating hematopoietin-2 level" RELATED [] synonym: "circulating IL-3 level" RELATED [] synonym: "circulating IL3 level" RELATED [] synonym: "circulating interleukin-3 level" RELATED [] synonym: "circulating mast-cell colony-stimulating factor level" RELATED [] synonym: "circulating multipotential colony-stimulating factor level" RELATED [] synonym: "circulating P-cell stimulating factor level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008625 name: blood interleukin-5 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine that promotes differentiation and activation of eosinophils; it also triggers activated B-cells to differentiate into immunoglobulin-secreting cells." [MeSH:D015848 "interleukin-5"] synonym: "circulating B-cell growth factor-II level" RELATED [] synonym: "circulating BCGF-II level" RELATED [] synonym: "circulating eosinophil differentiation factor level" RELATED [] synonym: "circulating IL-5 level" RELATED [] synonym: "circulating IL5 level" RELATED [] synonym: "circulating interleukin-5 level" RELATED [] synonym: "circulating T-cell replacing factor level" RELATED [] synonym: "circulating T-cell-replacing factor level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008628 name: blood interleukin-9 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a multifunctional cytokine secreted by primarily by activated TH2 cells that may play a role as a regulator of allergic inflammation, and has been shown to enhance the growth and differentiation of mast cells, and can act on a variety of other immune cells." [MeSH:D016906 "interleukin-9"] synonym: "circulating IL-9 level" RELATED [] synonym: "circulating IL9 level" RELATED [] synonym: "circulating interleukin-9 level" RELATED [] synonym: "circulating P40 T-Cell Growth Factor level" RELATED [] synonym: "circulating T-Cell Growth Factor P40 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008631 name: blood interleukin-16 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine produced by activated T-cells that stimulates the migration of CD4-positive lymphocytes and monocytes." [MeSH:D019410 "interleukin-16"] synonym: "circulating IL-16 level" RELATED [] synonym: "circulating IL16 level" RELATED [] synonym: "circulating interleukin-16 level" RELATED [] synonym: "circulating LCF factor level" RELATED [] synonym: "circulating lymphocyte chemoattractant factor level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008634 name: blood interleukin-18 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a cytokine which enhances the cytotoxic activity of NK cells and cytotoxic T-cells and appears to play a role both as neuroimmunomodulator and in the induction of mucosal immunity." [MeSH:D020382 "interleukin-18"] synonym: "circulating IFN-gamma inducing factor level" RELATED [] synonym: "circulating IL-18 level" RELATED [] synonym: "circulating IL18 level" RELATED [] synonym: "circulating interferon-gamma inducing factor" RELATED [] synonym: "circulating interleukin-18 concentration" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008637 name: blood interleukin-1 alpha amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of an interleukin-1 subtype that occurs as a membrane-bound pro-protein form that is cleaved by proteases to form a secreted mature form; both membrane-bound and secreted forms of interleukin-1alpha are biologically active." [MeSH:D053582 "interleukin-1alpha"] synonym: "circulating hematopoietin-1 level" RELATED [] synonym: "circulating IL-1a level" RELATED [] synonym: "circulating IL-1alpha level" RELATED [] synonym: "circulating IL1 alpha level" RELATED [] synonym: "circulating IL1a level" RELATED [] synonym: "circulating interleukin-1 alpha level" RELATED [] is_a: VT:0008589 ! blood interleukin-1 amount [Term] id: VT:0008640 name: blood interleukin-1 beta amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of an interleukin-1 subtype that is synthesized as an inactive membrane-bound pro-protein on monocytes, macrophages and other cells; proteolytic processing of the precursor form by caspase 1 results in release of the active form of interleukin-1beta from the membrane." [MeSH:D053583 "interleukin-1beta"] synonym: "circulating catabloin level" RELATED [] synonym: "circulating IL-1 beta level" RELATED [] synonym: "circulating IL-1b level" RELATED [] synonym: "circulating Il1b level" RELATED [] synonym: "circulating interleukin-1 beta level" RELATED [] is_a: VT:0008589 ! blood interleukin-1 amount [Term] id: VT:0008643 name: blood interleukin-12a amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the p35 subunit of interleukin-12." [MeSH:D053765 "interleukin-12 subunit p35"] synonym: "circulating IL-12a level" RELATED [] synonym: "circulating IL-12p35 level" RELATED [] synonym: "circulating interleukin-12a level" RELATED [] synonym: "circulating interleukin-12p35 level" RELATED [] is_a: VT:0008616 ! blood interleukin-12 amount [Term] id: VT:0008646 name: blood interleukin-12b amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the p40 cytokine subunit that is a component of both interleukin-12 and interleukin-23." [MeSH:D053762 "interleukin-12 subunit p40"] synonym: "circulating IL-12b level" RELATED [] synonym: "circulating IL-12p40 level" RELATED [] synonym: "circulating IL-23b level" RELATED [] synonym: "circulating IL-23p40 level" RELATED [] synonym: "circulating interleukin-12 beta chain level" RELATED [] synonym: "circulating interleukin-12b level" RELATED [] synonym: "circulating interleukin-12p40 level" RELATED [] synonym: "circulating interleukin-23 p40 level" RELATED [] synonym: "circulating interleukin-23b level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0008649 name: blood interleukin-23a amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the p19 subunit of interleukin-23." [MeSH:D053760 "interleukin-23 subunit p19"] synonym: "circulating IL-23 alpha level" RELATED [] synonym: "circulating IL-23 p19 level" RELATED [] synonym: "circulating IL-23a level" RELATED [] synonym: "circulating IL-23p19 level" RELATED [] synonym: "circulating interleukin-23 alpha level" RELATED [] synonym: "circulating interleukin-23a level" RELATED [] synonym: "circulating interleukin-23p19 level" RELATED [] is_a: VT:0008619 ! blood interleukin-23 amount [Term] id: VT:0008650 name: interleukin-1 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a soluble factor produced by monocytes, macrophages and other cells, which activates T-lymphocytes and potentiates their response to mitogens or antigens." [MeSH:D007375 "interleukin-1"] synonym: "epidermal cell derived thymocyte-activating factor secretion" EXACT [] synonym: "IL-1 secretion" EXACT [] synonym: "interleukin I secretion" EXACT [] synonym: "lymphocyte-activating factor secretion" EXACT [] synonym: "macrophage cell factor secretion" EXACT [] synonym: "T helper factor secretion" EXACT [] xref: ATOL:0000539 is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008653 name: interleukin-1 alpha secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of an interleukin-1 subtype that occurs as a membrane-bound pro-protein form that is cleaved by proteases to form a secreted mature form; both membrane-bound and secreted forms of interleukin-1alpha are biologically active." [MeSH:D053582 "interleukin-1alpha"] synonym: "hematopoietin-1 secretion" EXACT [] synonym: "IL-1a secretion" EXACT [] synonym: "IL-1alpha secretion" EXACT [] synonym: "IL1 alpha secretion" EXACT [] synonym: "IL1a secretion" EXACT [] is_a: VT:0008650 ! interleukin-1 secretion trait [Term] id: VT:0008656 name: interleukin-1 beta secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of an interleukin-1 subtype that is synthesized as an inactive membrane-bound pro-protein on monocytes, macrophages and other cells; proteolytic processing of the precursor form by caspase 1 results in release of the active form of interleukin-1beta from the membrane." [MeSH:D053583 "interleukin-1beta"] synonym: "catabloin secretion" EXACT [] synonym: "IL-1 beta secretion" EXACT [] synonym: "IL-1b secretion" EXACT [] synonym: "Il1b secretion" EXACT [] is_a: VT:0008650 ! interleukin-1 secretion trait [Term] id: VT:0008659 name: interleukin-10 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine produced by a variety of cell types, including T-cells, monocytes, dendritic cells and epithelial cells that exerts a variety of effects on immunoregulation and inflammation." [MeSH:D016753 "interleukin-10"] synonym: "CSIF-10 secretion" EXACT [] synonym: "cytokine synthesis inhibitory factor secretion" EXACT [] synonym: "IL-10 secretion" EXACT [] synonym: "IL10 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008662 name: interleukin-12 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a heterodimeric cytokine that plays a role in innate and adaptive immune responses; it is produced by dendritic cells, macrophages and a variety of other immune cells and plays a role in the stimulation of interferon-gamma production by T-cells and natural killer cells." [MeSH:D018664 "interleukin-12"] comment: Interleukin-12 is a 70 kDa protein that is composed of covalently linked 40 kDa (IL-12b) and 35 kDa (IL-12a) subunits. The 40 kDa subunit (IL-12b) also is a component of interleukin-23 together with the IL-23a ( 19kDa) chain. synonym: "cytotoxic lymphocyte maturation factor secretion" EXACT [] synonym: "IL-12 p70 secretion" EXACT [] synonym: "IL-12 secretion" EXACT [] synonym: "IL12 secretion" EXACT [] synonym: "interleukin-12 p70 secretion" EXACT [] synonym: "natural killer cell stimulatory factor secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008665 name: interleukin-12a secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of the p35 subunit of interleukin-12." [MeSH:D053765 "interleukin-12 subunit p35"] synonym: "IL-12a secretion" EXACT [] synonym: "IL-12p35 secretion" EXACT [] synonym: "interleukin-12p35 secretion" EXACT [] is_a: VT:0008662 ! interleukin-12 secretion trait [Term] id: VT:0008668 name: interleukin-12b secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of the p40 cytokine subunit that is a component of both interleukin-12 and interleukin-23." [MeSH:D053762 "interleukin-12 subunit p40"] synonym: "IL-12b secretion" EXACT [] synonym: "IL-12p40 secretion" EXACT [] synonym: "IL-23b secretion" EXACT [] synonym: "IL-23p40 secretion" EXACT [] synonym: "interleukin-12 beta chain secretion" EXACT [] synonym: "interleukin-12p40 secretion" EXACT [] synonym: "interleukin-23 p40 secretion" EXACT [] synonym: "interleukin-23b secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008671 name: interleukin-13 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine synthesized by T-cells that produces proliferation, immunoglobulin isotype switching, and immunoglobulin production by immature B-cells, and appears to play a role in regulating inflammatory and immune responses." [MeSH:D018793 "interleukin-13"] synonym: "IL-13 secretion" EXACT [] synonym: "IL13 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008674 name: interleukin-15 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine that stimulates the proliferation of T-cells and can induce proliferation and differentiation of B-cells; interleukin-15 shares biological activities with interleukin-2." [MeSH:D019409 "interleukin-15"] synonym: "IL-15 secretion" EXACT [] synonym: "IL15 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008677 name: interleukin-16 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine produced by activated T-cells that stimulates the migration of CD4-positive lymphocytes and monocytes." [MeSH:D019410 "interleukin-16"] synonym: "IL-16 secretion" EXACT [] synonym: "IL16 secretion" EXACT [] synonym: "LCF factor secretion" EXACT [] synonym: "lymphocyte chemoattractant factor secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008680 name: interleukin-17 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a proinflammatory cytokine produced primarily by T-cells or their precursors." [MeSH:D020381 "interleukin-17"] comment: Several subtypes of interleukin-17 have been identified, each of which is a product of a unique gene. synonym: "CTLA-8 secretion" NARROW [] synonym: "CTLA8 secretion" NARROW [] synonym: "cytokine CX2 secretion" NARROW [] synonym: "cytotoxic T lymphocyte-associated antigen 8 secretion" NARROW [] synonym: "IL-17 secretion" EXACT [] synonym: "IL17 secretion" EXACT [] synonym: "ML-1 secretion" NARROW [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008683 name: interleukin-18 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine which enhances the cytotoxic activity of NK cells and cytotoxic T-cells and appears to play a role both as neuroimmunomodulator and in the induction of mucosal immunity." [MeSH:D020382 "interleukin-18"] synonym: "IFN-gamma inducing factor secretion" EXACT [] synonym: "IL-18 secretion" EXACT [] synonym: "IL18 secretion" EXACT [] synonym: "interferon-gamma inducing factor secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008686 name: interleukin-2 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a soluble substance elaborated by antigen- or mitogen-stimulated T-cells which induces DNA synthesis in naive lymphocytes." [MeSH:D007376 "interleukin-2"] synonym: "IL-2 secretion" EXACT [] synonym: "IL2 secretion" EXACT [] synonym: "interleukin II secretion" EXACT [] synonym: "interleukine 2 secretion" EXACT [] synonym: "lymphocyte mitogenic factor secretion" EXACT [] synonym: "Ro-23-6019 secretion" EXACT [] synonym: "Ro-236019 secretion" EXACT [] synonym: "RU 49637 secretion" EXACT [] synonym: "RU-49637 secretion" EXACT [] synonym: "T-cell growth factor secretion" EXACT [] synonym: "T-cell stimulating factor secretion" EXACT [] synonym: "TCGF secretion" EXACT [] synonym: "thymocyte stimulating factor secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008689 name: interleukin-23 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a heterodimeric cytokine that plays a role in innate and adaptive immune responses; it is produced by dendritic cells, macrophages and a variety of other immune cells." [MeSH:D053759 "interleukin-23"] comment: Interleukin-23 is comprised of a unique 19 kDa subunit (IL-23a) and 40 kDa subunit (IL-12b) that is shared with interleukin-12. synonym: "IL-23 secretion" EXACT [] synonym: "IL23 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008692 name: interleukin-23a secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of the p19 subunit of interleukin-23." [MeSH:D053760 "interleukin-23 subunit p19"] synonym: "IL-23 alpha secretion" EXACT [] synonym: "IL-23 p19 secretion" EXACT [] synonym: "IL-23a secretion" EXACT [] synonym: "IL-23p19 secretion" EXACT [] synonym: "interleukin-23 alpha secretion" EXACT [] synonym: "interleukin-23p19 secretion" EXACT [] is_a: VT:0008689 ! interleukin-23 secretion trait [Term] id: VT:0008695 name: interleukin-3 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a multilineage cell growth factor secreted by lymphocytes, epithelial cells and astrocytes which stimulates clonal proliferation and differentiation of various types of blood and tissue cells." [MeSH:D007377 "interleukin-3"] synonym: "colony-stimulating factor 2 alpha secretion" EXACT [] synonym: "eosinophil-mast cell growth-factor secretion" EXACT [] synonym: "erythrocyte burst-promoting factor secretion" EXACT [] synonym: "hematopoietin-2 secretion" EXACT [] synonym: "IL-3 secretion" EXACT [] synonym: "IL3 secretion" EXACT [] synonym: "mast-cell colony-stimulating factor secretion" EXACT [] synonym: "multipotential colony-stimulating factor secretion" EXACT [] synonym: "P-cell stimulating factor secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008698 name: interleukin-4 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a soluble factor produced by activated T-cells that induces the expression of MHC class II genes and FC receptors on B-cells and causes their proliferation and differentiation; it also acts on T-cells, mast cells and several other hematopoietic lineage cells." [MeSH:D015847 "interleukin-4"] synonym: "B cell stimulatory factor-1 secretion" EXACT [] synonym: "B-cell growth factor-1 secretion" EXACT [] synonym: "B-cell growth factor-I secretion" EXACT [] synonym: "B-cell proliferating factor secretion" EXACT [] synonym: "B-cell stimulating factor-1 secretion" EXACT [] synonym: "B-cell stimulatory factor 1 secretion" EXACT [] synonym: "B-cell stimulatory factor-1 secretion" EXACT [] synonym: "BCGF-1 secretion" EXACT [] synonym: "Binetrakin secretion" EXACT [] synonym: "BSF-1 secretion" EXACT [] synonym: "IL-4 secretion" EXACT [] synonym: "IL4 secretion" EXACT [] synonym: "mast cell growth factor-2 secretion" EXACT [] synonym: "MCGF-2 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008701 name: interleukin-5 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine that promotes differentiation and activation of eosinophils; it also triggers activated B-cells to differentiate into immunoglobulin-secreting cells." [MeSH:D015848 "interleukin-5"] synonym: "B-cell growth factor-II secretion" EXACT [] synonym: "BCGF-II secretion" EXACT [] synonym: "eosinophil differentiation factor secretion" EXACT [] synonym: "IL-5 secretion" EXACT [] synonym: "IL5 secretion" EXACT [] synonym: "T-cell replacing factor secretion" EXACT [] synonym: "T-cell-replacing factor secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008704 name: interleukin-6 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine that stimulates the growth and differentiation of B-cells and is also a growth factor for hybridomas and plasmacytomas, and is produced by many different cells including T-cells, monocytes and fibroblasts." [MeSH:D015850 "interleukin-6"] synonym: "B cell stimulatory factor-2 secretion" EXACT [] synonym: "B-cell differentiation factor secretion" EXACT [] synonym: "B-cell differentiation factor-2 secretion" EXACT [] synonym: "B-cell stimulatory factor 2 secretion" EXACT [] synonym: "B-cell stimulatory factor-2 secretion" EXACT [] synonym: "BSF-2 secretion" EXACT [] synonym: "hepatocyte-stimulating factor secretion" EXACT [] synonym: "hybridoma growth factor secretion" EXACT [] synonym: "IFN-beta 2 secretion" EXACT [] synonym: "IL-6 secretion" EXACT [] synonym: "IL6 secretion" EXACT [] synonym: "MGI-2 secretion" EXACT [] synonym: "myeloid differentiation-inducing protein secretion" EXACT [] synonym: "plasmacytoma growth factor secretion" EXACT [] xref: ATOL:0000540 is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008707 name: interleukin-7 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a cytokine produced by bone marrow stromal cells that promotes the growth of B-cell precursors and is co-mitogenic with interleukin-2 for mature T-cell activation." [MeSH:D015851 "interleukin-7"] synonym: "IL-7 secretion" EXACT [] synonym: "IL7 secretion" EXACT [] synonym: "lymphopoietin-1 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008710 name: interleukin-9 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a multifunctional cytokine secreted primarily by activated TH2 cells that may play a role as a regulator of allergic inflammation, and has been shown to enhance the growth and differentiation of mast cells, and can act on a variety of other immune cells." [MeSH:D016906 "interleukin-9"] synonym: "IL-9 secretion" EXACT [] synonym: "IL9 secretion" EXACT [] synonym: "P40 T-Cell Growth Factor secretion" EXACT [] synonym: "T-Cell Growth Factor P40 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0008713 name: cytokine amount namespace: Trait.ontology def: "The proportion, quantity, or volume of any of the non-antibody proteins made by inflammatory leukocytes and some non-leukocytic cells that affect the behavior of other cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0010034 ! immune serum protein amount [Term] id: VT:0008719 name: neutrophil recruitment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the diffusion or accumulation of neutrophils in tissues or cells in response to a wide variety of substances released at the sites of inflammatory reactions." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002463 ! neutrophil physiology trait [Term] id: VT:0008720 name: neutrophil migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement of neutrophils from point to point." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "neutrophil chemotaxis" EXACT [] is_a: VT:0002463 ! neutrophil physiology trait is_a: VT:0005073 ! granulocyte migration trait [Term] id: VT:0008721 name: chemokine amount namespace: Trait.ontology def: "The proportion, quantity, or volume of any of the class of pro-inflammatory cytokines that attract and activate leukocytes." [MeSH:D018925 "Chemokines"] synonym: "chemokine level" EXACT [] is_a: VT:0008713 ! cytokine amount [Term] id: VT:0008723 name: eosinophil recruitment trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the diffusion or accumulation of eosinophils in tissues or cells in response to a wide variety of substances released at the sites of inflammatory reactions." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002465 ! eosinophil physiology trait [Term] id: VT:0008724 name: eosinophil migration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the directed and orderly movement of eosinophils from point to point." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "eosinophil chemotaxis" RELATED [] is_a: VT:0002465 ! eosinophil physiology trait is_a: VT:0005073 ! granulocyte migration trait [Term] id: VT:0008737 name: spleen physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organ that filters blood and stores red corpuscles and platelets." [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"] is_a: VT:0003762 ! immune system organ physiology trait is_a: VT:0010254 ! hematopoietic system physiology trait [Term] id: VT:0008739 name: spleen iron amount namespace: Trait.ontology def: "The proportion, quantity, or volume of iron present in the spleen tissue." [RGD:MS] synonym: "spleen iron level" EXACT [] synonym: "spleen iron load" EXACT [] synonym: "splenic iron level" EXACT [] synonym: "splenic iron load" EXACT [] is_a: VT:0000689 ! spleen morphology trait is_a: VT:0001770 ! iron amount [Term] id: VT:0008744 name: B cell anergy trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process contributing to anergy in B cells, a state of functional inactivation which is part of B cell tolerance induction." [MGI:GO "Definition from the Gene Ontology"] synonym: "B lymphocyte anergy" EXACT [] synonym: "B-cell anergy" EXACT [] synonym: "B-lymphocyte anergy" EXACT [] xref: GO:0002515 "B cell anergy" is_a: VT:0004944 ! B cell negative selection trait is_a: VT:0005004 ! lymphocyte anergy trait [Term] id: VT:0008745 name: central B cell anergy trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the processes of B cell anergy, a state of functional inactivation that occurs as part of tolerance induction, in B cells in the bone marrow." [MGI:GO "Definition from the Gene Ontology"] synonym: "central B lymphocyte anergy" EXACT [] synonym: "central B-cell anergy" EXACT [] synonym: "central B-lymphocyte anergy" EXACT [] xref: GO:0002341 "central B cell anergy" is_a: VT:0008744 ! B cell anergy trait [Term] id: VT:0008746 name: peripheral B cell anergy trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the processes of B cell anergy, a state of functional inactivation that occurs as part of tolerance induction, in B cells outside the bone marrow." [MGI:GO "Definition from the Gene Ontology"] synonym: "peripheral B lymphocyte anergy" EXACT [] synonym: "peripheral B-cell anergy" EXACT [] synonym: "peripheral B-lymphocyte anergy" EXACT [] xref: GO:0002453 "peripheral B cell anergy" is_a: VT:0008744 ! B cell anergy trait [Term] id: VT:0008747 name: T cell anergy trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process contributing to anergy in T cells, a state of functional inactivation which is part of T cell tolerance induction." [MGI:GO "Definition from the Gene Ontology"] synonym: "T lymphocyte anergy" EXACT [] synonym: "T-cell anergy" EXACT [] synonym: "T-lymphocyte anergy" EXACT [] xref: GO:0002870 "T cell anergy" is_a: VT:0004918 ! negative T cell selection trait is_a: VT:0005004 ! lymphocyte anergy trait [Term] id: VT:0008748 name: central T cell anergy trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the processes of T cell anergy, a state of functional inactivation which is part of tolerance induction, that occur in the thymus." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "central T lymphocyte anergy" EXACT [] synonym: "central T-cell anergy" EXACT [] synonym: "central T-lymphocyte anergy" EXACT [] is_a: VT:0008747 ! T cell anergy trait [Term] id: VT:0008749 name: peripheral T cell anergy trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the processes of T cell anergy, a state of functional inactivation which is part of tolerance induction, that occur outside the thymus." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "peripheral T lymphocyte anergy" EXACT [] synonym: "peripheral T-cell anergy" EXACT [] synonym: "peripheral T-lymphocyte anergy" EXACT [] is_a: VT:0008747 ! T cell anergy trait [Term] id: VT:0008750 name: interferon amount namespace: Trait.ontology def: "The proportion, quantity, or volume of proteins secreted by vertebrate cells in response to a wide variety of inducers; they confer resistance against many different viruses, inhibit proliferation of normal and malignant cells, impede multiplication of intracellular parasites, enhance macrophage and granulocyte phagocytosis, augment natural killer cell activity, and show several other immunomodulatory functions." [MeSH:D007372 "interferons"] synonym: "interferon level" EXACT [] is_a: VT:0008713 ! cytokine amount [Term] id: VT:0008751 name: interleukin amount namespace: Trait.ontology def: "The proportion, quantity, or volume of soluble factors which stimulate growth-related activities of leukocytes as well as other cell types; they enhance cell proliferation and differentiation, DNA synthesis, secretion of other biologically active molecules and responses to immune and inflammatory stimuli." [MeSH:D007378 "Interleukins"] synonym: "interleukin level" EXACT [] is_a: VT:0008713 ! cytokine amount [Term] id: VT:0008752 name: tumor necrosis factor amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a serum glycoprotein produced by activated macrophages and NK cells and involved in initiating local inflammatory responses, particularly by its action on the endothelium of local blood vessels; its actions result in increased vascular permeability and induction of expression of adhesion molecules on the endothelium." [MeSH:D014409 "Tumor Necrosis Factor-alpha"] synonym: "cachectin level" EXACT [] synonym: "TNF level" EXACT [] synonym: "TNFA level" EXACT [] synonym: "tumor necrosis factor alpha level" EXACT [] synonym: "tumor necrosis factor level" EXACT [] is_a: VT:0008713 ! cytokine amount [Term] id: VT:0008754 name: T cell receptor V(D)J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which T cell receptor V, D, and J, or V and J gene segments, depending on the specific locus, are recombined within a single locus." [GO:0033153, MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "T cell receptor V(D)J joining" EXACT [] synonym: "T cell receptor V(D)J rearrangement" EXACT [] synonym: "T cell receptor V-D-J joining" EXACT [] synonym: "T cell receptor V-D-J rearrangement" EXACT [] synonym: "T cell receptor V-D-J recombination" EXACT [] synonym: "T cell receptor V-J joining" EXACT [] synonym: "T cell receptor V-J rearrangement" EXACT [] synonym: "T cell receptor V-J recombination" EXACT [] synonym: "T-cell receptor V(D)J recombination" EXACT [] synonym: "TCR V(D)J recombination" EXACT [] is_a: VT:0002145 ! T cell development trait [Term] id: VT:0008755 name: immunoglobulin V(D)J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which immunoglobulin V, D, and J or V and J gene segments, depending on the specific locus, are recombined within a single locus." [GO:0033152, MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "immunoglobulin V(D)J joining" EXACT [] synonym: "immunoglobulin V(D)J rearrangement" EXACT [] synonym: "immunoglobulin V-D-J joining" EXACT [] synonym: "immunoglobulin V-D-J rearrangement" EXACT [] synonym: "immunoglobulin V-D-J recombination" EXACT [] synonym: "immunoglobulin V-J joining" EXACT [] synonym: "immunoglobulin V-J rearrangement" EXACT [] synonym: "immunoglobulin V-J recombination" EXACT [] xref: GO:0033152 "immunoglobulin V(D)J recombination" is_a: VT:0002144 ! B cell development trait [Term] id: VT:0008756 name: T cell receptor alpha chain V-J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which V and J gene segments of the T cell receptor alpha chain are recombined." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "T cell receptor alpha chain V-J joining" EXACT [] synonym: "T cell receptor alpha chain V-J rearrangement" EXACT [] synonym: "T cell receptor alpha chain V-J recombination" EXACT [] is_a: VT:0008754 ! T cell receptor V(D)J recombination trait [Term] id: VT:0008757 name: T cell receptor gamma chain V-J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which V and J gene segments of the T cell receptor gamma chain are recombined." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "T cell receptor gamma chain V-J joining" EXACT [] synonym: "T cell receptor gamma chain V-J rearrangement" EXACT [] synonym: "T cell receptor gamma chain V-J recombination" EXACT [] is_a: VT:0008754 ! T cell receptor V(D)J recombination trait [Term] id: VT:0008758 name: T cell receptor beta chain V(D)J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which V, D, and J segments of the T cell receptor beta chain are recombined." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "T cell receptor beta chain V(D)J joining" EXACT [] synonym: "T cell receptor beta chain V(D)J rearrangement" EXACT [] synonym: "T cell receptor beta chain V-D-J joining" EXACT [] synonym: "T cell receptor beta chain V-D-J rearrangement" EXACT [] synonym: "T cell receptor beta chain V-D-J recombination" EXACT [] synonym: "T-cell receptor beta chain V(D)J recombination" EXACT [] synonym: "TCR beta chain V(D)J recombination" EXACT [] is_a: VT:0008754 ! T cell receptor V(D)J recombination trait [Term] id: VT:0008759 name: T cell receptor delta chain V(D)J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which V, D, and J segments of the T cell receptor delta chain are recombined." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "T cell receptor delta chain V(D)J joining" EXACT [] synonym: "T cell receptor delta chain V(D)J rearrangement" EXACT [] synonym: "T cell receptor delta chain V-D-J joining" EXACT [] synonym: "T cell receptor delta chain V-D-J rearrangement" EXACT [] synonym: "T cell receptor delta chain V-D-J recombination" EXACT [] synonym: "T-cell receptor delta chain V(D)J recombination" EXACT [] synonym: "TCR delta chain V(D)J recombination" EXACT [] is_a: VT:0008754 ! T cell receptor V(D)J recombination trait [Term] id: VT:0008760 name: immunoglobulin heavy chain V(D)J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which V, D, and J gene segments of the immunoglobulin heavy chain are recombined." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "immunoglobulin heavy chain V(D)J joining" EXACT [] synonym: "immunoglobulin heavy chain V(D)J rearrangement" EXACT [] synonym: "immunoglobulin heavy chain V-D-J joining" EXACT [] synonym: "immunoglobulin heavy chain V-D-J rearrangement" EXACT [] synonym: "immunoglobulin heavy chain V-D-J recombination" EXACT [] is_a: VT:0008755 ! immunoglobulin V(D)J recombination trait [Term] id: VT:0008761 name: immunoglobulin light chain V-J recombination trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which V and J gene segments of the immunoglobulin light chain are recombined." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "immunoglobulin light chain V-J joining" EXACT [] synonym: "immunoglobulin light chain V-J rearrangement" EXACT [] synonym: "immunoglobulin light chain V-J recombination" EXACT [] is_a: VT:0008755 ! immunoglobulin V(D)J recombination trait [Term] id: VT:0008766 name: B cell receptor editing trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of replacing receptors on B cells, in which RAG gene expression allows continued light-chain gene rearrangement and expression of a new light chain which combines with the previous heavy chain to form a new receptor." [GO:0002452, MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "B lymphocyte receptor editing" EXACT [] synonym: "B-cell receptor editing" EXACT [] synonym: "B-lymphocyte receptor editing" EXACT [] is_a: VT:0002144 ! B cell development trait [Term] id: VT:0008769 name: plasmacytoid dendritic cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the phagocytic dendritic cells that are morphologically similar to plasma cells, but do not express B lineage markers, and produce large amounts of alpha/beta interferons (IFN-/) in response to viral and bacterial stimuli; plasmacytoid dendritic cells are found in the thymic medulla and lymph node T cell areas and are responsible for immune tolerance." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: VT:0002376 ! dendritic cell physiology trait [Term] id: VT:0008778 name: lymphangiogenesis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the formation of lymphatic vessels, tubular vessels involved in the transport of lymph and lymphocytes." [MeSH:D042583 "Lymphangiogenesis", MeSH:D042601 "Lymphatic vessels"] comment: Do not use for the initial specification of lymphatic vessels in early development trait; use for the remodeling of pre-existing lymphatic vessels. This term is similar to angiogenesis for blood vessel remodeling. is_a: VT:0010179 ! immune system development trait [Term] id: VT:0008781 name: B cell apoptosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which B cells undergo programmed cell death." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "B lymphocyte apoptosis" EXACT [] synonym: "B-cell apoptosis" EXACT [] synonym: "B-lymphocyte apoptosis" EXACT [] is_a: VT:0002459 ! B cell physiology trait [Term] id: VT:0008876 name: uterine NK cell quantity namespace: Trait.ontology def: "The proportion or number of the uterine subset of the non-T, non-B lymphocytes, having a granular morphology and which are important in innate immunity to viruses and other intracellular pathogens; uNK cells contribute to uterine decidualization and are recruited to implantation sites." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", PMID:12887272] synonym: "GMG cell number" EXACT [] synonym: "granulated metrial gland cell number" EXACT [] synonym: "uNK cell number" EXACT [] synonym: "uterine natural killer cell number" EXACT [] is_a: VT:0008043 ! NK cell quantity [Term] id: VT:0008894 name: intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a T cell present in columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [ISBN:0781735149] synonym: "IEL morphology trait" EXACT [] synonym: "intraepithelial lymphocyte morphology trait" EXACT [] synonym: "intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "intraepithelial T-cell morphology trait" EXACT [] synonym: "intraepithelial T-lymphocyte morphology trait" EXACT [] is_a: VT:0008037 ! T cell morphology trait [Term] id: VT:0008895 name: intraepithelial T cell quantity namespace: Trait.ontology def: "The proportion or number of T cells present in columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [ISBN:0781735149] synonym: "IEL number" EXACT [] synonym: "intraepithelial lymphocyte number" EXACT [] synonym: "intraepithelial T lymphocyte number" RELATED [] synonym: "intraepithelial T-cell number" EXACT [] synonym: "intraepithelial T-lymphocyte number" EXACT [] is_a: VT:0006387 ! T cell quantity is_a: VT:0008894 ! intraepithelial T cell morphology trait [Term] id: VT:0008897 name: blood immunoglobulin G2c amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of immunoglobulin class G2c." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "IgG2c concentration" RELATED [] synonym: "IgG2c level" RELATED [] synonym: "plasma immunoglobulin G2c amount" NARROW [] synonym: "serum level of immunoglobulin G2c" RELATED [] is_a: VT:0001805 ! blood immunoglobulin G amount [Term] id: VT:0009056 name: interleukin-21 secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a pleiotropic cytokine that regulates immunoglobulin production, plasma cell and Th17 T cell differentiation, CD8+ T cell expansion, and inhibits antigen presentation by dendritic cells." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "IL-21 secretion" EXACT [] synonym: "IL21 secretion" EXACT [] is_a: VT:0008568 ! interleukin secretion trait [Term] id: VT:0009059 name: blood interleukin-21 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a pleiotropic cytokine that regulates immunoglobulin production, plasma cell and Th17 T cell differentiation, CD8+ T cell expansion, and inhibits antigen presentation by dendritic cells." [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"] synonym: "circulating IL-21 level" RELATED [] synonym: "circulating IL21 level" RELATED [] synonym: "circulating interleukin-21 level" RELATED [] is_a: VT:0008588 ! blood interleukin amount [Term] id: VT:0009258 name: thymocyte apoptosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which immature T cells located in the thymus undergo programmed cell death." [CL:0000893 "thymocyte"] comment: Note that a thymocyte is an immature T cell located in the thymus (CL:0000893). is_a: VT:0003763 ! thymus physiology trait [Term] id: VT:0009323 name: spleen development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the organ that filters blood and stores red corpuscles and platelets." [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "spleen formation" EXACT [] synonym: "spleen organogenesis" EXACT [] synonym: "splenic development trait" EXACT [] is_a: VT:0002450 ! immune system organ development trait is_a: VT:0010255 ! hematopoietic system development trait [Term] id: VT:0009332 name: splenocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells of the spleen." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Splenocytes can be any one of the different white blood cell types in the spleen. Splenocyte is a vague term, but this name is seen many references as such and is not explained futher, necessitating a need for this terminology. synonym: "spleen cell morphology trait" EXACT [] is_a: VT:0000689 ! spleen morphology trait [Term] id: VT:0009333 name: splenocyte physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the cells of the spleen." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Splenocytes can be any one of the different white blood cell types in the spleen. Splenocyte is a vague term, but this name is seen many references as such and is not explained futher, necessitating a need for this terminology. synonym: "spleen cell physiology trait" EXACT [] is_a: VT:0008737 ! spleen physiology trait [Term] id: VT:0009334 name: splenocyte proliferation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which the splenocyte cell population undergoes expansion by cell division." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Splenocytes can be any one of the different white blood cell types in the spleen. Splenocyte is a vague term, but this name is seen many references as such and is not explained futher, necessitating a need for this terminology. synonym: "spleen cell proliferation" EXACT [] is_a: VT:0009333 ! splenocyte physiology trait [Term] id: VT:0009340 name: splenocyte apoptosis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which spleen cells undergo programmed cell death." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] comment: Splenocytes can be any one of the different white blood cell types in the spleen. Splenocyte is a vague term, but this name is seen many references as such and is not explained futher, necessitating a need for this terminology. synonym: "spleen cell apoptosis" EXACT [] is_a: VT:0009333 ! splenocyte physiology trait [Term] id: VT:0009539 name: Hassall's corpuscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "Hassal body morphology trait" EXACT [] synonym: "Hassall concentric corpuscle morphology trait" EXACT [] synonym: "thymic corpuscle morphology trait" EXACT [] synonym: "Virchow-Hassall body morphology trait" EXACT [] is_a: VT:0002375 ! thymus medulla morphology trait is_a: VT:0009544 ! thymus epithelium morphology trait [Term] id: VT:0009543 name: thymus corticomedullary boundary morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:17067941] synonym: "thymic corticomedullary boundary morphology trait" EXACT [] synonym: "thymus CMZ morphology trait" EXACT [] synonym: "thymus cortico-medullary boundary morphology trait" EXACT [] synonym: "thymus cortico-medullary junction morphology trait" EXACT [] synonym: "thymus cortico-medullary zone morphology trait" EXACT [] synonym: "thymus corticomedullary zone morphology trait" EXACT [] is_a: VT:0002367 ! thymus lobule morphology trait [Term] id: VT:0009544 name: thymus epithelium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the supporting framework of the thymus." [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:17067941] is_a: VT:0000703 ! thymus morphology trait [Term] id: VT:0009623 name: inguinal lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lymph nodes located in the groin area." [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000701 ! lymph node size trait is_a: VT:0002353 ! inguinal lymph node morphology trait [Term] id: VT:0009625 name: abdominal lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the parietal or visceral lymph nodes of the abdomen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002339 ! lymph node morphology trait [Term] id: VT:0009626 name: celiac lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern any of the visceral lymph nodes located along the celiac trunk, which drain lymph from the stomach, duodenum, pancreas, spleen, and biliary tract." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0009625 ! abdominal lymph node morphology trait [Term] id: VT:0009627 name: submandibular lymph node morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lymph nodes beneath the mandible that receive vessels from the face and tongue and drain into the superior deep cervical nodes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0008463 ! peripheral lymph node morphology trait [Term] id: VT:0009629 name: brachial lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "humeral axillary lymph node size trait" EXACT [] is_a: VT:0005231 ! brachial lymph node morphology trait is_a: VT:0009631 ! axillary lymph node size trait [Term] id: VT:0009631 name: axillary lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lymph nodes located around the axillary vein that receive lymphatic drainage from the upper or forelimb, scapular region and pectoral region." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000701 ! lymph node size trait is_a: VT:0002340 ! axillary lymph node morphology trait [Term] id: VT:0009635 name: popliteal lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lymph nodes which drain the legs." [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: VT:0000701 ! lymph node size trait is_a: VT:0002352 ! popliteal lymph node morphology trait [Term] id: VT:0009858 name: cellular extravasation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the migration of leukocytes from the blood vessels into the surrounding tissue." [MGI:GO "Definition from the Gene Ontology"] synonym: "immune cell cellular extravasation" EXACT [] synonym: "leukocyte transmigration" NARROW [] synonym: "lymphocyte transmigration" NARROW [] synonym: "transendothelial leukocyte migration" EXACT [] xref: GO:0045123 "cellular extravasation" is_a: VT:0003156 ! leukocyte migration trait [Term] id: VT:0009919 name: transitional stage T1 B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a type of transitional stage B cell that migrates from the bone marrow into the peripheral circulation, and finally to the spleen; this cell type has the phenotype surface IgM-positive, surface IgD-negative, CD21-negative, CD23-negative, and CD62L-negative." [CL:0000958 "T1 B cell", PMID:12810111] synonym: "T1 B cell morphology trait" EXACT [] synonym: "T1 stage B cell morphology trait" EXACT [] synonym: "transitional one stage B lymphocyte morphology trait" EXACT [] synonym: "transitional one stage B-cell morphology trait" EXACT [] synonym: "transitional one stage B-lymphocyte morphology trait" EXACT [] is_a: VT:0008188 ! transitional stage B cell morphology trait created_by: csmith creation_date: 2010-01-27T01:10:38Z [Term] id: VT:0009920 name: transitional stage T2 B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a type of transitional stage B cell that has the phenotype surface IgM-positive, surface IgD-positive, CD21-positive, CD23-positive, CD62L-negative, and is located in the splenic B follicles." [CL:0000959 "T2 B cell", PMID:12810111] synonym: "T2 B cell morphology trait" EXACT [] synonym: "T2 stage B cell morphology trait" EXACT [] synonym: "transitional two stage B lymphocyte morphology trait" EXACT [] synonym: "transitional two stage B-cell morphology trait" EXACT [] synonym: "transitional two stage B-lymphocyte morphology trait" EXACT [] is_a: VT:0008188 ! transitional stage B cell morphology trait created_by: csmith creation_date: 2010-01-27T01:11:25Z [Term] id: VT:0009921 name: transitional stage T3 B cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a type of a transitional stage B cell that expresses surface IgM and IgD, and CD62L; this cell type appears to be an anergic B cell that does not proliferate upon BCR signaling, is found in the spleen and lymph nodes, and has the phenotype surface IgM-positive, surface IgD-positive, CD21-positive, CD23-positive, and CD62L-positive." [CL:0000960 "T3 B cell", PMID:12810111] synonym: "T3 B cell morphology trait" EXACT [] synonym: "T3 stage B cell morphology trait" EXACT [] synonym: "transitional three stage B lymphocyte morphology trait" EXACT [] synonym: "transitional three stage B-cell morphology trait" EXACT [] synonym: "transitional three stage B-lymphocyte morphology trait" EXACT [] is_a: VT:0008188 ! transitional stage B cell morphology trait created_by: csmith creation_date: 2010-01-27T01:11:40Z [Term] id: VT:0009923 name: transitional stage T1 B cell quantity namespace: Trait.ontology def: "The proportion or number of a type of transitional stage B cell that migrates from the bone marrow into the peripheral circulation, and finally to the spleen; this cell type has the phenotype surface IgM-positive, surface IgD-negative, CD21-negative, CD23-negative, and CD62L-negative." [CL:0000958 "T1 B cell", PMID:12810111] synonym: "T1 B cell number" EXACT [] synonym: "T1 stage B cell number" EXACT [] synonym: "transitional one stage B lymphocyte number" EXACT [] synonym: "transitional one stage B-cell number" EXACT [] synonym: "transitional one stage B-lymphocyte number" EXACT [] is_a: VT:0008190 ! transitional stage B cell quantity is_a: VT:0009919 ! transitional stage T1 B cell morphology trait created_by: csmith creation_date: 2010-01-27T01:12:48Z [Term] id: VT:0009926 name: transitional stage T2 B cell quantity namespace: Trait.ontology def: "The proportion or number of a type of transitional stage B cell that has the phenotype surface IgM-positive, surface IgD-positive, CD21-positive, CD23-positive, CD62L-negative, and is located in the splenic B follicles." [CL:0000959 "T2 B cell", PMID:12810111] synonym: "T2 B cell number" EXACT [] synonym: "T2 stage B cell number" EXACT [] synonym: "transitional two stage B lymphocyte number" EXACT [] synonym: "transitional two stage B-cell number" EXACT [] synonym: "transitional two stage B-lymphocyte number" EXACT [] is_a: VT:0008190 ! transitional stage B cell quantity is_a: VT:0009920 ! transitional stage T2 B cell morphology trait created_by: csmith creation_date: 2010-01-27T01:14:05Z [Term] id: VT:0010001 name: egg color trait namespace: Product.ontology xref: ATOL:0002071 is_a: PT:0000026 ! egg organoleptic trait created_by: caripark creation_date: 2012-10-17T11:38:11Z [Term] id: VT:0010002 name: egg flavor trait namespace: Product.ontology xref: ATOL:0002077 is_a: PT:0000026 ! egg organoleptic trait created_by: caripark creation_date: 2012-10-17T11:38:11Z [Term] id: VT:0010003 name: egg albumen flavor trait namespace: Product.ontology xref: ATOL:0002079 is_a: VT:0010002 ! egg flavor trait created_by: caripark creation_date: 2012-10-17T11:39:54Z [Term] id: VT:0010004 name: egg yolk flavor trait namespace: Product.ontology xref: ATOL:0002078 is_a: VT:0010002 ! egg flavor trait created_by: caripark creation_date: 2012-10-17T11:39:54Z [Term] id: VT:0010005 name: bone development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of a portion of osseous tissue forming a part of the skeleton; consists of a dense outer layer surrounded by the periosteum, and an inner spongy substance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010065 ! connective tissue development trait created_by: caripark creation_date: 2011-08-15T03:28:49Z [Term] id: VT:0010006 name: adipose molecular composition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the proportions of proteins, minerals, nutrients, gases, or other substances in fat-storing cells/tissue." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000003 ! adipose morphology trait created_by: caripark creation_date: 2011-08-16T03:29:33Z [Term] id: VT:0010007 name: skin adnexa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the tissues or structures associated with or embedded in the skin." [MP:0010678] synonym: "skin appendage morphology trait" EXACT [] is_a: VT:0100020 ! integumentary system morphology trait created_by: caripark creation_date: 2011-08-25T12:06:35Z [Term] id: VT:0010008 name: skin adnexa development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of any of the tissues or structures associated with or embedded in the skin." [MP:0010678] is_a: VT:0100018 ! integumentary system development trait created_by: caripark creation_date: 2011-08-25T12:11:04Z [Term] id: VT:0010009 name: femur mass namespace: Trait.ontology def: "The amount of matter in the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:1000369 ! femur size trait created_by: caripark creation_date: 2011-10-18T10:14:44Z [Term] id: VT:0010010 name: femur strength trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the long bone of the thigh to withstand the application of force without yielding or breaking." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001542 ! bone strength trait created_by: caripark creation_date: 2011-10-18T10:31:38Z [Term] id: VT:0010011 name: femur mineral mass namespace: Trait.ontology def: "The amount of matter in the minerals (inorganic elements or compounds that have importance in body functions) in the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "femur bone mineral density" RELATED [] synonym: "femur mineral content" RELATED [] is_a: VT:0010009 ! femur mass created_by: caripark creation_date: 2011-10-18T10:34:29Z [Term] id: VT:0010012 name: humerus strength trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the bone of the forelimb that articulates with the scapula above and the radius and ulna below to withstand the application of force without yielding or breaking." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001542 ! bone strength trait created_by: caripark creation_date: 2011-10-18T10:48:29Z [Term] id: VT:0010013 name: humerus mass namespace: Trait.ontology def: "The amount of matter in the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100000 ! humerus size trait created_by: caripark creation_date: 2011-10-18T02:00:18Z [Term] id: VT:0010014 name: femur circumference namespace: Trait.ontology def: "The distance around the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:1000369 ! femur size trait created_by: caripark creation_date: 2011-10-18T02:01:36Z [Term] id: VT:0010015 name: tibia mass namespace: Trait.ontology def: "The amount of matter in the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100001 ! tibia size trait created_by: caripark creation_date: 2011-10-18T02:41:39Z [Term] id: VT:0010016 name: adipocyte quantity namespace: Trait.ontology def: "The proportion or number of fat-storing cells." [MP:0009115] is_a: VT:0004128 ! adipocyte morphology trait created_by: caripark creation_date: 2011-10-19T10:28:02Z [Term] id: VT:0010017 name: white adipose mass namespace: Trait.ontology def: "The amount of matter in the connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001781 ! white adipose amount created_by: caripark creation_date: 2011-10-19T10:55:08Z [Term] id: VT:0010018 name: mammary gland symmetry namespace: Trait.ontology def: "Correspondence in size, shape, and relative position of milk-producing glands in female mammals on opposite sides of a dividing line or plane or about a center or axis." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", VTO:INRA "INRA curator"] xref: ATOL:0000546 is_a: VT:0000627 ! mammary gland morphology trait created_by: caripark creation_date: 2009-12-07T10:30:39Z [Term] id: VT:0010019 name: epididymis mass namespace: Trait.ontology def: "The amount of matter in the elongated structure connected to the posterior surface of the testes that transports, stores, and matures spermatozoa between testes and vas deferens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002631 ! epididymis morphology trait created_by: caripark creation_date: 2011-10-19T12:56:12Z [Term] id: VT:0010020 name: seminiferous tubule diameter namespace: Trait.ontology def: "The distance across the tubules in the testes where spermatogenesis occurs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001153 ! seminiferous tubule size trait created_by: caripark creation_date: 2011-10-19T01:25:53Z [Term] id: VT:0010021 name: muscle molecular composition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the proportions of proteins, minerals, nutrients, gases, or other substances in the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002108 ! muscular system morphology trait created_by: caripark creation_date: 2010-04-06T02:28:15Z [Term] id: VT:0010022 name: metacarpus length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the bones of the forelimbs that articulate proximally with the carpal bones and distally with the phalanges." [ISBN:978-0028454405 "Greene, EC Anatomy of the Rat"] is_a: VT:0003073 ! metacarpus morphology trait created_by: caripark creation_date: 2011-10-19T03:46:46Z [Term] id: VT:0010023 name: forelimb length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the anterior/superior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] is_a: VT:0000550 ! forelimb morphology trait created_by: caripark creation_date: 2011-10-20T01:13:57Z [Term] id: VT:0010024 name: hindlimb length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the posterior/inferior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] is_a: VT:0000556 ! hindlimb morphology trait created_by: caripark creation_date: 2011-10-20T01:15:51Z [Term] id: VT:0010025 name: milk fatty acid C12:1(n-3) amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an omega-3, unsaturated fatty acid with a twelve-carbon backbone." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "milk lauroleic acid amount" EXACT [] is_a: VT:0010322 ! milk omega-3 fatty acid amount is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2011-12-09T10:51:46Z [Term] id: VT:0010026 name: milk fatty acid C15:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a fifteen-carbon backbone." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "milk pentadecanoic acid amount" EXACT [] synonym: "milk pentadecylic acid amount" EXACT [] is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2011-12-09T10:58:12Z [Term] id: VT:0010027 name: milk fatty acid C24:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a twenty-four-carbon backbone." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "mlik tetracosanoic acid amount" EXACT [] is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2011-12-09T11:00:38Z [Term] id: VT:0010028 name: milk total protein amount namespace: Trait.ontology def: "The total proportion, quantity, or volume of protein in milk." [RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "milk total protein content" EXACT [] is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2009-12-14T04:02:02Z [Term] id: VT:0010029 name: milk alpha-lactalbumin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of alpha-lactalbumin, an enzyme that catalyzes lactose synthesis in mammary epithelial cells." [ATOL:0000541, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk alpha-lactalbumin content" EXACT [] xref: ATOL:0000541 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2009-12-15T08:42:38Z [Term] id: VT:0010030 name: udder height namespace: Trait.ontology def: "The vertical dimension of the organ in certain species containing two or more mammary glands, each with its own nipple." [http://www.merriam-webster.com/dictionary/udder] synonym: "rear udder height" NARROW [] is_a: VT:0100035 ! udder size trait created_by: caripark creation_date: 2012-01-12T11:12:32Z [Term] id: VT:0010031 name: immune serum protein secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of circulating proteins involved in the body's defense againste foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001790 ! immune system physiology trait created_by: caripark creation_date: 2012-01-27T12:52:59Z [Term] id: VT:0010032 name: chemokine secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of any of the class of pro-inflammatory cytokines that attract and activate leukocytes." [MeSH:D018925 "chemokines"] is_a: VT:0003009 ! cytokine secretion trait created_by: caripark creation_date: 2012-01-27T01:05:42Z [Term] id: VT:0010033 name: complement protein amount namespace: Trait.ontology def: "The proportion, quantity or volume of any of the cascade of proteins that act together to attack extracellular pathogens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010034 ! immune serum protein amount created_by: caripark creation_date: 2012-01-27T01:27:10Z [Term] id: VT:0010034 name: immune serum protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of circulating proteins involved in the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "immune serum protein level" RELATED [] is_a: VT:0010120 ! protein amount created_by: caripark creation_date: 2012-01-27T02:22:11Z [Term] id: VT:0010035 name: acute phase protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the series of proteins found in the blood shortly after infection, which participate in the early phases of host defense against infection." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MP:0010211] is_a: VT:0010034 ! immune serum protein amount created_by: caripark creation_date: 2012-01-27T02:32:56Z [Term] id: VT:0010036 name: C-reactive protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this plasma protein that normally circulates in increased amounts during inflammation or after tissue damage." [MeSH:D002097 "C-reactive protein"] is_a: VT:0010035 ! acute phase protein amount created_by: caripark creation_date: 2012-01-27T02:35:41Z [Term] id: VT:0010037 name: serum amyloid protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an acute-phase reaction protein that is a precursor to amyloid A protein; it is present in very high levels during acute inflammatory episodes, and is present in low concentrations in normal sera, but is found at higher concentrations in sera of older persons and in patients with amyloidosis." [MeSH:D12.776.049.790] is_a: VT:0010035 ! acute phase protein amount created_by: caripark creation_date: 2012-01-27T02:35:41Z [Term] id: VT:0010038 name: adrenergic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers of the autonomic nervous system that use norepinephrine as their neurotransmitter." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-01-31T03:34:31Z [Term] id: VT:0010039 name: adrenergic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers of the autonomic nervous system that use norepinephrine as their neurotransmitter." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-01-31T03:34:31Z [Term] id: VT:0010040 name: lymphatic system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the system of lymphoid channels and tissues that drains extracellular fluid from the periphery via the thoracic duct to the blood." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "lymphoid system physiology trait" EXACT [] is_a: VT:0010253 ! hemolymphoid system physiology trait is_a: VT:0100017 ! circulatory system physiology trait created_by: caripark creation_date: 2010-05-17T04:20:50Z [Term] id: VT:0010041 name: cholinergic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers that utilize acetylcholine as a neurotransmitter" [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-01-31T03:40:44Z [Term] id: VT:0010042 name: sperm morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the male gamete." [ATOL:0001008, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0001008 is_a: VT:0002208 ! germ cell morphology trait created_by: caripark creation_date: 2010-01-15T01:20:52Z [Term] id: VT:0010043 name: ovarian follicle physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the ovarian follicle." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0003507 ! ovary physiology trait created_by: caripark creation_date: 2010-01-15T03:53:20Z [Term] id: VT:0010044 name: intramuscular adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of fat-storing cells/tissue present within skeletal muscle." [http:www1.agric.gov.ab.ca, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "intramuscular adipose percentage" RELATED [] synonym: "intramuscular fat amount" EXACT [] synonym: "intramuscular fat content" EXACT [] synonym: "marbling" RELATED [] is_a: VT:0000759 ! skeletal muscle morphology trait is_a: VT:0001781 ! white adipose amount created_by: caripark creation_date: 2010-02-02T02:09:41Z [Term] id: VT:0010045 name: subcutaneous adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of fat-storing tissue located directly beneath the skin." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "subcutaneous fat amount" EXACT [] synonym: "subcutaneous fat weight" RELATED [] is_a: VT:0001781 ! white adipose amount is_a: VT:0003705 ! hypodermis morphology trait created_by: caripark creation_date: 2010-02-02T02:15:38Z [Term] id: VT:0010046 name: fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body fluid or tissue of organic, monobasic acids derived from hydrocarbons; they are saturated and unsaturated." [MeSH:D005227 "fatty acids"] is_a: VT:0001547 ! lipid amount created_by: caripark creation_date: 2010-02-09T12:45:06Z [Term] id: VT:0010047 name: tendon physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the fibrous bands or cords of connective tissue at the ends of muscle fibers that attach muscles to bones and other structures." [MeSH:D013710 "tendons"] is_a: VT:0002106 ! muscular system physiology trait is_a: VT:0010064 ! connective tissue physiology trait created_by: caripark creation_date: 2010-04-06T02:52:51Z [Term] id: VT:0010048 name: muscle saturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons present in the contractile tissue that effects movement; the carbon chain contains only single carbon-carbon bonds." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MeSH:D005227 "fatty acids"] is_a: VT:0003249 ! muscle free fatty acid amount created_by: caripark creation_date: 2010-02-09T01:42:42Z [Term] id: VT:0010049 name: muscle unsaturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons present in the contractile tissue that effects movement; the carbon chain has one or more double or triple carbon-carbon bonds." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MeSH:D005231 "fatty acids, unsaturated"] is_a: VT:0003249 ! muscle free fatty acid amount created_by: caripark creation_date: 2010-02-09T01:42:42Z [Term] id: VT:0010050 name: muscle fatty acid C17:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C17H34O2) present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid C17:0 concentration" RELATED [] synonym: "muscle fatty acid C17:0 percentage" RELATED [] synonym: "muscle heptadecanoic acid concentration" EXACT [] is_a: VT:0010048 ! muscle saturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:54:42Z [Term] id: VT:0010051 name: muscle fatty acid C14:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C14H28O2) present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid C14:0 concentration" RELATED [] synonym: "muscle fatty acid C14:0 percentage" RELATED [] synonym: "muscle myristic acid concentration" EXACT [] is_a: VT:0010048 ! muscle saturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:54:42Z [Term] id: VT:0010052 name: muscle fatty acid C16:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C16H32O2) present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid C16:0 concentration" RELATED [] synonym: "muscle fatty acid C16:0 percentage" RELATED [] synonym: "muscle palmitic acid concentration" EXACT [] is_a: VT:0010048 ! muscle saturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:54:42Z [Term] id: VT:0010053 name: muscle fatty acid C18:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C18H36O2) present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid C18:0 concentration" RELATED [] synonym: "muscle fatty acid C18:0 percentage" RELATED [] synonym: "muscle stearic acid concentration" EXACT [] is_a: VT:0010048 ! muscle saturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:54:42Z [Term] id: VT:0010054 name: muscle fatty acid trans-11-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a monounsaturated fatty acid (C18H34O2), with a carbon-carbon double bond at C-11 position, present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle 7-octadecenoic acid content" EXACT [] synonym: "muscle fatty acid trans-11-C18:1 concentration" RELATED [] synonym: "muscle fatty acid trans-11-C18:1 percentage" RELATED [] synonym: "muscle vaccenic acid content" EXACT [] is_a: VT:0010049 ! muscle unsaturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:56:04Z [Term] id: VT:0010055 name: muscle fatty acid C20:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an unsaturated fatty acid (C20H36O2), with two carbon-carbon double bonds, present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle eicosadienoic acid content" EXACT [] synonym: "muscle fatty acid C20:2 concentration" RELATED [] synonym: "muscle fatty acid C20:2 percentage" RELATED [] is_a: VT:0010049 ! muscle unsaturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:56:04Z [Term] id: VT:0010056 name: muscle fatty acid cis-11-C20:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a monounsaturated fatty acid (C20H38O2), with a carbon-carbon double bond at C-11, present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle cis-11-eicosenoic acid concentration" EXACT [] synonym: "muscle fatty acid cis-11-C20:1 content" RELATED [] synonym: "muscle fatty acid cis-11-C20:1 percentage" RELATED [] is_a: VT:0010049 ! muscle unsaturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:56:04Z [Term] id: VT:0010057 name: muscle fatty acid cis-9,cis-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an omega-6 unsaturated fatty acid (C18H32O2), with two carbon-carbon double bonds, present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid cis-9,cis-12-C18:2 concentration" RELATED [] synonym: "muscle fatty acid cis-9,cis-12-C18:2 percentage" RELATED [] synonym: "muscle linoleic acid content" EXACT [] is_a: VT:0010049 ! muscle unsaturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:56:04Z [Term] id: VT:0010058 name: muscle fatty acid C18:3 n-3 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an omega-3, polyunsaturated fatty acid (C18H30O2), with three carbon-carbon double bonds, present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid C18:3 n-3 concentration" RELATED [] synonym: "muscle fatty acid C18:3 n-3 percentage" RELATED [] synonym: "muscle linolenic acid content" EXACT [] is_a: VT:0010049 ! muscle unsaturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:56:04Z [Term] id: VT:0010059 name: muscle fatty acid cis-9-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a monounsaturated, omega-9 fatty acid (C18H34O2), present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid cis-9-C18:1 concentration" RELATED [] synonym: "muscle fatty acid cis-9-C18:1 percentage" RELATED [] synonym: "muscle oleic acid content" EXACT [] is_a: VT:0010049 ! muscle unsaturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:56:04Z [Term] id: VT:0010060 name: muscle fatty acid cis-9-C16:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an omega-7, monounsaturated fatty acid (C16H30O2) present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle fatty acid cis-9-C16:1 concentration" RELATED [] synonym: "muscle fatty acid cis-9-C16:1 percentage" RELATED [] synonym: "muscle palmitoleic acid content" EXACT [] is_a: VT:0010049 ! muscle unsaturated fatty acid amount created_by: caripark creation_date: 2010-02-09T01:56:04Z [Term] id: VT:0010061 name: brown adipocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cells of the thermogenic form of adipose capable of rapid liberation of energy; contain multiple small droplets of triglycerides and a high number of mitochondria." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0009116] synonym: "brown fat cell morphology" EXACT [] is_a: VT:0002971 ! brown adipose morphology trait is_a: VT:0004128 ! adipocyte morphology trait created_by: caripark creation_date: 2010-02-09T02:39:08Z [Term] id: VT:0010062 name: cholinergic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers that utilize acetylcholine as a neurotransmitter." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition"] is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-01-31T03:40:44Z [Term] id: VT:0010063 name: visceral adipose mass namespace: Trait.ontology def: "The amount of matter in the fat-storing tissue surrounding the internal organs." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "visceral adipose weight" RELATED [] is_a: VT:0010017 ! white adipose mass is_a: VT:1000220 ! abdominal adipose amount created_by: caripark creation_date: 2010-02-11T11:57:32Z [Term] id: VT:0010064 name: connective tissue physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the physical or functional supporting tissue of the body, a major constituent of which is an extracellular matrix of ground substance, protein fibers, and structural glycoproteins." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100002 ! connective tissue trait created_by: caripark creation_date: 2010-02-18T02:58:22Z [Term] id: VT:0010065 name: connective tissue development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the physical or functional supporting tissue of the body, a major constituent of which is an extracellular matrix of ground substance, protein fibers, and structural glycoproteins." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100002 ! connective tissue trait created_by: caripark creation_date: 2010-02-18T03:05:23Z [Term] id: VT:0010066 name: Henle's loop morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the U-shaped portion of the renal tubule, consisting of descending and ascending limbs; situated between the proximal and distal convoluted tubules." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "loop of Henle morphology trait" EXACT [] synonym: "nephron loop morphology trait" EXACT [] is_a: VT:0002703 ! kidney tubule morphology trait is_a: VT:0003014 ! kidney medulla morphology trait created_by: caripark creation_date: 2010-02-19T10:42:05Z [Term] id: VT:0010067 name: convoluted tubule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the convoluted segments of nephron made up of the proximal tubule, leading from the glomerular capsule to the descending limb of Henle's loop, and the distal tubule, leading from the ascending limb of Henle's loop to a collecting tubule." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000521 ! kidney cortex morphology trait is_a: VT:0002703 ! kidney tubule morphology trait created_by: caripark creation_date: 2010-02-19T10:42:05Z [Term] id: VT:0010068 name: kidney collecting duct morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small ducts that receive urine from several renal tubules, which converge to join larger collecting tubules (papillary ducts of Bellini) that open into the renal pelvis." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "kidney collecting tubule morphology trait" EXACT [] is_a: VT:0002703 ! kidney tubule morphology trait created_by: caripark creation_date: 2010-02-19T10:42:05Z [Term] id: VT:0010069 name: proximal convoluted tubule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the renal tubule that extends from the glomerular capsule to the descending limb of Henle's loop." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010067 ! convoluted tubule morphology trait created_by: caripark creation_date: 2010-02-19T10:50:14Z [Term] id: VT:0010070 name: distal convoluted tubule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the portion of the renal tubule that extends from the ascending limb of Henle's loop to a collecting tubule." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010067 ! convoluted tubule morphology trait created_by: caripark creation_date: 2010-02-19T10:50:14Z [Term] id: VT:0010071 name: lymphatic system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the system of lymphoid channels and tissues that drains extracellular fluid from the periphery via the thoracic duct to the blood." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "lymphoid system morphology trait" EXACT [] is_a: VT:0010252 ! hemolymphoid system morphology trait is_a: VT:0100016 ! circulatory system morphology trait created_by: caripark creation_date: 2010-05-17T04:31:50Z [Term] id: VT:0010072 name: lymphatic system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the system of lymphoid channels and tissues that drains extracellular fluid from the periphery via the thoracic duct to the blood." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "lymphoid system development trait" EXACT [] is_a: VT:0010251 ! hemolymphoid system development trait is_a: VT:0100015 ! circulatory system development trait created_by: caripark creation_date: 2010-05-17T04:33:36Z [Term] id: VT:0010073 name: esophagus length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the part of the digestive canal through which food passes from the pharynx to the stomach." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "oesophagus length" EXACT [] xref: ATOL:0000553 is_a: VT:0000006 ! esophagus size trait created_by: caripark creation_date: 2010-05-18T08:39:59Z [Term] id: VT:0010074 name: enteric cholinergic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers that utilize acetylcholine as a neurotransmitter and transmit impulses to the alimentary tube." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010062 ! cholinergic nerve fiber quantity created_by: caripark creation_date: 2012-02-01T09:33:02Z [Term] id: VT:0010075 name: occipitomastoid suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the cranial suture that lies between the occipital bone and the mastoid portion of the temporal bones; continuous with the lambdoid suture." [ISBN:0-914294-08-3 "Gray's Anatomy"] is_a: VT:0002835 ! cranial suture morphology trait created_by: caripark creation_date: 2010-03-11T09:34:04Z [Term] id: VT:0010076 name: parietomastoid suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the suture that unites the mastoid process of the temporal bone with the region of the mastoid angle of the parietal bone; continuous with the squamosal suture." [ISBN:0-914294-08-3 "Gray's Anatomy"] is_a: VT:0002835 ! cranial suture morphology trait created_by: caripark creation_date: 2010-03-11T09:54:44Z [Term] id: VT:0010077 name: sphenofrontal suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the union between the orbital plate of the frontal bone and the lesser wings of the sphenoid on either side." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002835 ! cranial suture morphology trait created_by: caripark creation_date: 2010-03-11T09:59:49Z [Term] id: VT:0010078 name: sphenoparietal suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the union between the lower border of the parietal bone with the upper edge of the greater wing of the sphenoid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002835 ! cranial suture morphology trait created_by: caripark creation_date: 2010-03-11T10:01:52Z [Term] id: VT:0010079 name: sphenozygomatic suture morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the junction between the zygomatic bone and greater wing of the sphenoid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002835 ! cranial suture morphology trait created_by: caripark creation_date: 2010-03-11T10:03:32Z [Term] id: VT:0010080 name: skeletal muscle physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000401 is_a: VT:0002106 ! muscular system physiology trait created_by: caripark creation_date: 2010-04-06T03:04:49Z [Term] id: VT:0010081 name: maxillary sinus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large pyramidal cavity within the body of the maxilla; its apex is formed by the zygomatic process and its base by the lateral wall of the nose." [ISBN:0-914294-08-3 "Gray's Anatomy"] is_a: VT:0000455 ! maxilla morphology trait is_a: VT:0002240 ! paranasal sinus morphology trait created_by: caripark creation_date: 2010-03-11T10:55:43Z [Term] id: VT:0010082 name: zygomatic process of maxilla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the rough projection of the upper bony framework of the mouth, which articulates with the zygomatic bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "malar process morphology trait" EXACT [] is_a: VT:0000455 ! maxilla morphology trait created_by: caripark creation_date: 2010-03-11T10:58:13Z [Term] id: VT:0010083 name: frontal process of maxilla morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the upward extension from the body of the upper bony framework of the mouth, which articulates with the frontal bone." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "nasal process" EXACT [] is_a: VT:0000455 ! maxilla morphology trait created_by: caripark creation_date: 2010-03-11T11:00:44Z [Term] id: VT:0010084 name: long lived plasma cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a fully differentiated plasma cell that lives for years, as opposed to months, secretes immunoglobulin, and has the phenotype weakly CD19-positive, CD20-negative, CD38-negative, strongly CD138-positive, MHC Class II-negative, surface immunoglobulin-negative, IgD-negative, and strongly CXCR4-positive; the majority of these cells of this type reside in the bone marrow." [CL:0000974 "long lived plasma cell", ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002439 ! plasma cell morphology trait created_by: csmith creation_date: 2010-03-29T10:53:46Z [Term] id: VT:0010085 name: short lived plasma cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a fully differentiated plasma cell that lives for months, not years." [CL:0000975 "short lived plasma cell", ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002439 ! plasma cell morphology trait created_by: csmith creation_date: 2010-03-29T10:56:46Z [Term] id: VT:0010086 name: vertebral column morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the supporting, flexible bony structure that encases the spinal cord." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "spinal column morphology trait" EXACT [] synonym: "spine morphology trait" EXACT [] is_a: VT:0002114 ! axial skeleton morphology trait created_by: caripark creation_date: 2010-03-12T11:52:50Z [Term] id: VT:0010087 name: ischium morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the lower, posterior part of the hip bone, which fuses with the ilium and pubis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "ischial bone morphology trait" EXACT [] is_a: VT:0010090 ! pelvic girdle morphology trait created_by: caripark creation_date: 2010-03-12T01:32:42Z [Term] id: VT:0010088 name: pubis morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the anteroinferior portion of the hip bone, which fuses with the ilium and ischium." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "pubic bone morphology trait" EXACT [] is_a: VT:0010090 ! pelvic girdle morphology trait created_by: caripark creation_date: 2010-03-12T01:32:42Z [Term] id: VT:0010089 name: shoulder girdle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the incomplete bony ring by which the upper/fore limbs are attached to the axial skeleton." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "pectoral girdle morphology trait" EXACT [] synonym: "thoracic girdle morphology trait" EXACT [] is_a: VT:0010091 ! appendicular skeleton morphology trait created_by: caripark creation_date: 2010-03-12T01:39:04Z [Term] id: VT:0010090 name: pelvic girdle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bony structure by which the lower or hind limbs are attached to the axial skeleton." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "pelvic arch morphology trait" EXACT [] is_a: VT:0010091 ! appendicular skeleton morphology trait created_by: caripark creation_date: 2010-03-12T01:39:04Z [Term] id: VT:0010091 name: appendicular skeleton morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bones of the limbs and the shoulder and pelvic girdles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010003 ! bone morphology trait created_by: caripark creation_date: 2010-03-16T08:45:13Z [Term] id: VT:0010092 name: thoracic cage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bony and cartilaginous structure enclosing the thoracic cavity, consisting of the thoracic vertebrae, ribs, costal cartilages, and sternum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0004624] is_a: VT:0002114 ! axial skeleton morphology trait created_by: caripark creation_date: 2010-03-16T09:27:29Z [Term] id: VT:0010093 name: costal cartilage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the nonvascular, flexible hyaline connective tissue that forms the anterior continuation of a rib, the means by which it articulates with the sternum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0006432] is_a: VT:0000163 ! cartilage morphology trait is_a: VT:0010092 ! thoracic cage morphology trait created_by: caripark creation_date: 2010-03-16T09:33:35Z [Term] id: VT:0010094 name: osteoblast morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the bone-forming cell that is derived from mesenchymal osteoprogenitor cells and forms an osseous matrix in which it becomes enclosed as an osteocyte." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "osteoplast morphology trait" EXACT [] is_a: VT:0010003 ! bone morphology trait created_by: caripark creation_date: 2010-03-16T10:41:40Z [Term] id: VT:0010095 name: osteoclast morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a large, multinucleated cell that functions in the absorption and removal of osseous tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "osteophage morphology trait" EXACT [] is_a: VT:0010003 ! bone morphology trait created_by: caripark creation_date: 2010-03-16T10:41:40Z [Term] id: VT:0010096 name: osteoblast quantity namespace: Trait.ontology def: "The proportion or number of bone-forming cells that are derived from mesenchymal osteoprogenitor cells and form an osseous matrix in which they become enclosed as osteocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "osteoblast cell number" EXACT [] synonym: "osteoblast cell quantity" EXACT [] synonym: "osteoblast number" EXACT [] is_a: VT:0010094 ! osteoblast morphology trait created_by: caripark creation_date: 2010-03-16T10:45:52Z [Term] id: VT:0010097 name: osteocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a mature osteoblast that has become embedded in the bone matrix in small cavities called lacunae and has cytoplasmic processes that extend into canaliculi and make contact with the processes of other osteocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008753] is_a: VT:0010094 ! osteoblast morphology trait created_by: caripark creation_date: 2010-03-16T10:45:52Z [Term] id: VT:0010098 name: osteoclast quantity namespace: Trait.ontology def: "The proportion or number of large, multinucleated cells that function in the absorption and removal of osseous tissue." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "osteoclast cell number" EXACT [] synonym: "osteoclast cell quantity" EXACT [] synonym: "osteoclast number" EXACT [] synonym: "osteophage cell number" EXACT [] is_a: VT:0010095 ! osteoclast morphology trait created_by: caripark creation_date: 2010-03-16T12:17:25Z [Term] id: VT:0010099 name: enteric cholinergic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers that utilize acetylcholine as a neurotransmitter and transmit impulses to the alimentary tube." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010041 ! cholinergic nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T09:37:21Z [Term] id: VT:0010100 name: lacrimal gland cholinergic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers that utilize acetylcholine as a neurotransmitter and transmit impulses to the gland that secretes tears." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010041 ! cholinergic nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T09:48:04Z [Term] id: VT:0010101 name: medullary cavity development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the marrow cavity in the shaft of a long bone during its formation and differentiation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "bone marrow cavity development trait" EXACT [] synonym: "marrow cavity development trait" EXACT [] synonym: "medullary canal development trait" EXACT [] is_a: VT:0010005 ! bone development trait created_by: caripark creation_date: 2010-03-29T10:36:52Z [Term] id: VT:0010102 name: vertebral column development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the supporting, flexible bony structure that encases the spinal cord." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "spinal column development trait" EXACT [] synonym: "spine development trait" EXACT [] is_a: VT:0010065 ! connective tissue development trait created_by: caripark creation_date: 2010-03-29T10:43:55Z [Term] id: VT:0010103 name: parotid salivary gland cholinergic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers that utilize acetylcholine as a neurotransmitter and transmit impulses to the exocrine gland lateral to the jaw that secretes saliva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010041 ! cholinergic nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T09:48:04Z [Term] id: VT:0010104 name: forelimb long bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the elongated bones of the anterior/superior extremities, consisting of a tubular shaft (diaphysis) and two extremities (epiphyses)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000550 ! forelimb morphology trait is_a: VT:0003723 ! long bone morphology trait created_by: caripark creation_date: 2010-04-05T02:47:34Z [Term] id: VT:0010105 name: hindlimb long bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the elongated bones of the posterior/inferior extremities, consisting of a tubular shaft (diaphysis) and two extremities (epiphyses)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000556 ! hindlimb morphology trait is_a: VT:0003723 ! long bone morphology trait created_by: caripark creation_date: 2010-04-05T02:47:34Z [Term] id: VT:0010106 name: limb muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscles of the anterior or posterior extremities." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002109 ! limb morphology trait is_a: VT:0003358 ! hypaxial muscle morphology trait created_by: caripark creation_date: 2010-04-05T03:03:17Z [Term] id: VT:0010107 name: hindlimb muscle morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the muscles of the posterior extremities." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000556 ! hindlimb morphology trait is_a: VT:0010106 ! limb muscle morphology trait created_by: caripark creation_date: 2010-04-05T03:24:05Z [Term] id: VT:0010108 name: hippocampus pyramidal cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the projection neurons in the pyramidal layer of the hippocampus." [MP:0009940] synonym: "hippocampus projection neuron morphology trait" EXACT [] synonym: "hippocampus pyramidal neuron morphology trait" EXACT [] is_a: VT:0015046 ! hippocampus neuron morphology trait is_a: VT:0015104 ! hippocampus pyramidal cell layer morphology trait created_by: caripark creation_date: 2010-04-06T01:09:49Z [Term] id: VT:0010109 name: hippocampus pyramidal cell quantity namespace: Trait.ontology def: "The proportion or number of projection neurons in the pyramidal layer of the hippocampus." [MP:0009940] synonym: "hippocampus projection neuron number" EXACT [] synonym: "hippocampus pyramidal cell number" EXACT [] synonym: "hippocampus pyramidal neuron number" EXACT [] is_a: VT:0003240 ! hippocampus neuron quantity is_a: VT:0010108 ! hippocampus pyramidal cell morphology trait created_by: caripark creation_date: 2010-04-06T01:11:39Z [Term] id: VT:0010110 name: heart muscle physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the striated, involuntary muscle comprising the myocardium." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cardiac muscle physiology trait" EXACT [] synonym: "myocardial physiology trait" EXACT [] synonym: "myocardium physiology trait" EXACT [] is_a: VT:0002106 ! muscular system physiology trait created_by: caripark creation_date: 2010-04-06T03:06:06Z [Term] id: VT:0010111 name: smooth muscle physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the unstriated, involuntary muscle tissue of the internal organs, blood vessels, and other body structures not under willful control." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002106 ! muscular system physiology trait created_by: caripark creation_date: 2010-04-06T03:08:12Z [Term] id: VT:0010112 name: intercalated disc morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the electron-dense junctional complex, at the end-to-end contacts of cardiac muscle cells, that contains three types of membrane junctions (fascia adherens, gap junctions and occasionally desmosomes)." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005329 ! heart muscle morphology trait created_by: caripark creation_date: 2010-04-08T10:47:48Z [Term] id: VT:0010113 name: masticatory muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of any of the muscles responsible for the movement of the jaws during mastication, including the masseter, temporalis, and medial and lateral pterygoid muscles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0003398 ! skeletal muscle size trait is_a: VT:0004234 ! masticatory muscle morphology trait created_by: caripark creation_date: 2010-04-12T10:53:03Z [Term] id: VT:0010114 name: intercostal muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib." [MeSH:D007366 "intercostal muscles"] is_a: VT:0002280 ! intercostal muscle morphology trait is_a: VT:0003398 ! skeletal muscle size trait created_by: caripark creation_date: 2010-04-12T10:55:36Z [Term] id: VT:0010115 name: diaphragm size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the thin musculomebranous barrier that separates the abdominal and thoracic cavities; often used for breathing control." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002279 ! diaphragm morphology trait is_a: VT:0003398 ! skeletal muscle size trait created_by: caripark creation_date: 2010-04-12T10:59:05Z [Term] id: VT:0010116 name: pectoralis muscle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of either or both of the two muscles that make up the upper and fore part of the chest that adduct and rotate the forelimb and lift the ribs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D010369 "pectoralis muscles"] is_a: VT:0003346 ! pectoralis muscle morphology trait is_a: VT:0003398 ! skeletal muscle size trait created_by: caripark creation_date: 2010-04-12T11:09:33Z [Term] id: VT:0010117 name: longissimus dorsi size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis." [ISBN:0-914294-08-3 "Gray's Anatomy"] is_a: VT:0003398 ! skeletal muscle size trait is_a: VT:1000706 ! longissimus dorsi morphology trait created_by: caripark creation_date: 2010-04-12T11:11:46Z [Term] id: VT:0010118 name: muscle cellular composition trait namespace: Trait.ontology def: "Any measurable or observable characteristic pertaining to the proportions of cells within the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002108 ! muscular system morphology trait created_by: caripark creation_date: 2010-04-12T03:02:24Z [Term] id: VT:0010119 name: skeletal muscle cellular composition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the proportions of cells in any of the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000759 ! skeletal muscle morphology trait is_a: VT:0010118 ! muscle cellular composition trait created_by: caripark creation_date: 2010-04-12T03:17:00Z [Term] id: VT:0010120 name: protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of macromolecules consisting of long sequences of amino acids in peptide linkage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015077 ! molecule homeostasis trait created_by: caripark creation_date: 2010-05-05T11:27:49Z [Term] id: VT:0010121 name: sublingual salivary gland cholinergic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers that utilitze acetylcholine as a neurotransmitter and transmit impulses to the exocrine gland on the floor of the mouth that secretes saliva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010041 ! cholinergic nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T09:48:04Z [Term] id: VT:0010122 name: somite morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the paired, metamerically arranged cell masses formed in the embryonic paraxial mesoderm." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002085 ! embryonic cell/tissue morphology trait created_by: caripark creation_date: 2010-04-16T10:29:00Z [Term] id: VT:0010123 name: lacrimal gland cholinergic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers that utilize acetylcholine as a neurotransmitter and transmit impulses to the gland that secretes tears." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010062 ! cholinergic nerve fiber quantity created_by: caripark creation_date: 2012-02-01T10:10:33Z [Term] id: VT:0010124 name: parotid salivary gland cholinergic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers that utilize acetylcholine as a neurotransmitter and transmit impulses to the exocrine gland lateral to the jaw that secretes saliva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010062 ! cholinergic nerve fiber quantity created_by: caripark creation_date: 2012-02-01T10:10:33Z [Term] id: VT:0010125 name: celiac lymph node size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the visceral lymph nodes located along the celiac trunk, which drain lymph from the stomach, duodenum, pancreas, spleen, and biliary tract." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000701 ! lymph node size trait is_a: VT:0009626 ! celiac lymph node morphology trait created_by: caripark creation_date: 2010-05-06T08:55:39Z [Term] id: VT:0010126 name: sublingual salivary gland cholinergic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers that utilitze acetylcholine as a neurotransmitter and transmit impulses to the exocrine gland on the floor of the mouth that secretes saliva." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010062 ! cholinergic nerve fiber quantity created_by: caripark creation_date: 2012-02-01T10:10:33Z [Term] id: VT:0010127 name: bursa of Fabricius size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of an epithelial outgrowth of the cloaca in birds; prior to involution, it is where B-lymphocyte maturation occurs." [MeSH:D002060 "Bursa of Fabricius"] is_a: VT:0002221 ! immune system organ size trait created_by: caripark creation_date: 2010-05-06T09:57:27Z [Term] id: VT:0010128 name: sensory nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of fibers of afferent nerves conveying impulses processed by the central nervous system." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-02-01T11:56:25Z [Term] id: VT:0010129 name: esophagus mass namespace: Trait.ontology def: "The amount of matter in the part of the digestive canal through which food passes from the pharynx to the stomach." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "esophagus weight" EXACT [] synonym: "oesophagus weight" EXACT [] synonym: "tissue weight of the esophagus" EXACT [] synonym: "tissue weight of the oesophagus" EXACT [] xref: ATOL:0000554 is_a: VT:0000006 ! esophagus size trait created_by: caripark creation_date: 2010-05-18T08:40:49Z [Term] id: VT:0010130 name: DN1 thymic pro-T cell quantity namespace: Trait.ontology def: "The proportion or number of pro-T cells that have the cell surface marker phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-negative." [RGD:MS] synonym: "DN1 thymic pro-T lymphocyte number" EXACT [] synonym: "DN1 thymic pro-T-cell number" EXACT [] synonym: "DN1 thymic pro-T-lymphocyte number" EXACT [] synonym: "DN1 thymic progenitor T cell number" EXACT [] synonym: "DN1 thymocyte number" EXACT [] is_a: VT:0000715 ! thymocyte quantity is_a: VT:0005089 ! double-negative T cell quantity created_by: csmith creation_date: 2010-04-14T02:53:53Z [Term] id: VT:0010131 name: cecum mass namespace: Trait.ontology def: "The amount of matter in the large sac at the ileum and large intestine junction." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "cecum weight" RELATED [] synonym: "tissue weight of the cecum" RELATED [] xref: ATOL:0001107 is_a: VT:0000494 ! cecum morphology trait is_a: VT:0010220 ! large intestine mass created_by: caripark creation_date: 2010-05-18T08:51:58Z [Term] id: VT:0010132 name: DN2 thymocyte quantity namespace: Trait.ontology def: "The proportion or number of thymocytes that have the cell surface marker phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-positive." [RGD:MS] comment: Note that this type of thymocyte is at the earliest stage of T cell receptor rearrangement of the beta, gamma, and delta T cell receptor chains. synonym: "DN2 alpha-beta immature T lymphocyte number" EXACT [] synonym: "DN2 alpha-beta immature T-cell number" EXACT [] synonym: "DN2 alpha-beta immature T-lymphocyte number" EXACT [] synonym: "DN2 cell number" EXACT [] synonym: "DN2 immature T cell number" EXACT [] synonym: "TN2 cell number" EXACT [] synonym: "TN2 thymocyte number" EXACT [] is_a: VT:0000715 ! thymocyte quantity is_a: VT:0005089 ! double-negative T cell quantity created_by: csmith creation_date: 2010-04-14T02:59:07Z [Term] id: VT:0010133 name: gizzard capacity namespace: Trait.ontology def: "The volume of or amount contained in the secondary, muscular stomach in some vertebrates used for grinding up food." [ATOL:0000555, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "gizzard volume" EXACT [] xref: ATOL:0000555 is_a: VT:1000667 ! gizzard morphology trait created_by: caripark creation_date: 2010-05-18T08:55:30Z [Term] id: VT:0010134 name: DN3 thymocyte quantity namespace: Trait.ontology def: "The proportion or number of thymocytes that have the cell surface marker phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [RGD:MS] synonym: "DN3 alpha-beta immature T lymphocyte number" EXACT [] synonym: "DN3 alpha-beta immature T-cell number" EXACT [] synonym: "DN3 alpha-beta immature T-lymphocyte number" EXACT [] synonym: "DN3 cell number" EXACT [] synonym: "DN3 immature T cell number" EXACT [] synonym: "TN3 cell number" EXACT [] synonym: "TN3 thymocyte number" EXACT [] is_a: VT:0000715 ! thymocyte quantity is_a: VT:0005089 ! double-negative T cell quantity created_by: csmith creation_date: 2010-04-14T02:59:48Z [Term] id: VT:0010135 name: gizzard muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the layer of muscular tissue surrounding the secondary, muscular stomach in some vertebrates used for grinding up food." [ATOL:0000556, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "muscle thickness of the gizzard" EXACT [] xref: ATOL:0000556 is_a: VT:1000667 ! gizzard morphology trait created_by: caripark creation_date: 2010-05-18T08:57:33Z [Term] id: VT:0010136 name: DN4 thymocyte quantity namespace: Trait.ontology def: "The proportion or number of thymocytes that have the cell surface marker phenotype CD4-negative, CD8-negative, CD44-negative, CD25-negative, and pre-TCR-positive." [RGD:MS] comment: Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and beginning to rearrange the T cell receptor alpha chain. synonym: "DN4 alpha-beta immature T lymphocyte number" EXACT [] synonym: "DN4 alpha-beta immature T-lymphocyte number" EXACT [] synonym: "DN4 cell number" EXACT [] synonym: "DN4 immature T cell number" EXACT [] synonym: "DN4 immature T-cell number" EXACT [] is_a: VT:0000715 ! thymocyte quantity is_a: VT:0005089 ! double-negative T cell quantity created_by: csmith creation_date: 2010-04-14T03:00:30Z [Term] id: VT:0010137 name: sensory nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the fibers of afferent nerves conveying impulses processed by the central nervous system." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T11:56:25Z [Term] id: VT:0010138 name: lymphatic vessel cell quantity namespace: Trait.ontology def: "The proportion or number of cells in the network of vessels which carries lymph around the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "lymphatic vessel cell number" EXACT [] is_a: VT:0001879 ! lymphatic vessel morphology trait created_by: caripark creation_date: 2010-05-06T10:10:23Z [Term] id: VT:0010139 name: immune response trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0006955 "immune response" is_a: VT:0001790 ! immune system physiology trait created_by: caripark creation_date: 2010-05-06T12:21:20Z [Term] id: VT:0010140 name: small intestine mass namespace: Trait.ontology def: "The amount of matter in the upper portion of the digestive tract, between the stomach and the large intestine." [ATOL:0001082, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "small intestine weight" RELATED [] synonym: "tissue weight of the small intestine" RELATED [] xref: ATOL:0001082 is_a: VT:0000496 ! small intestine morphology trait is_a: VT:0010196 ! intestine mass created_by: caripark creation_date: 2010-05-18T09:05:21Z [Term] id: VT:0010141 name: optic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to systematic arrangement of the fibers of the second cranial nerve which is responsible for conveying visual information from the retina to the brain." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001330 ! optic nerve morphology trait is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T02:59:05Z [Term] id: VT:0010142 name: nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the elongated processes of neurons." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002184 ! innervation trait created_by: caripark creation_date: 2012-02-01T03:13:53Z [Term] id: VT:0010143 name: nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of elongated processes of neurons." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002184 ! innervation trait created_by: caripark creation_date: 2012-02-01T03:13:53Z [Term] id: VT:0010144 name: pancreas mass namespace: Trait.ontology def: "The amount of matter in the organ that secretes pancreatic juice into the duodenum and secretes glucagon and insulin into the bloodstream." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "pancreas weight" RELATED [] synonym: "weight of the pancreas" RELATED [] xref: ATOL:0000557 is_a: VT:0003450 ! pancreas size trait created_by: caripark creation_date: 2010-05-18T09:25:22Z [Term] id: VT:0010145 name: rectum mass namespace: Trait.ontology def: "The amount of matter in the terminal portion of the intestinal tube adjacent to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "rectum weight" RELATED [] synonym: "tissue weight of the rectum" RELATED [] xref: ATOL:0001117 is_a: VT:0000492 ! rectum morphology trait is_a: VT:0010220 ! large intestine mass created_by: caripark creation_date: 2010-05-18T09:27:17Z [Term] id: VT:0010146 name: mannose-binding protein physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of a protein involved in innate immunity, which can bind mannosylated microorganisms and activate the complement pathway." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T10:37:22Z [Term] id: VT:0010147 name: inflammatory mediator physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of any of the endogenous compounds that mediate the local accumulation of fluid, plasma proteins, and leukocytes at the site of injury, insult, or infection." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T01:46:53Z [Term] id: VT:0010148 name: Merkel's receptor nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers to the modified epidermal cells located in the stratum basale and found mostly in areas where sensory perception is acute." [MP:0000985] is_a: VT:0000985 ! Merkel's receptor morphology trait is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T03:20:22Z [Term] id: VT:0010149 name: chemokine physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of any of the class of pro-inflammatory cytokines that attract and activate leukocytes." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T01:53:14Z [Term] id: VT:0010150 name: Merkel's receptor nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers to the modified epidermal cells located in the stratum basale and found mostly in areas where sensory perception is acute." [MP:0000985] is_a: VT:0000985 ! Merkel's receptor morphology trait is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-02-01T03:20:22Z [Term] id: VT:0010151 name: Purkinje cell nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers that connect to the neurons located at the interface of the molecular and internal granule layers of the cerebellar cortex." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0003894] is_a: VT:0000877 ! Purkinje cell morphology trait is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-02-01T03:43:36Z [Term] id: VT:0010152 name: chemotactic interleukin physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of any of a subset of interleukins that are involved in attracting leukocytes to a site of tissue injury." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T01:53:50Z [Term] id: VT:0010153 name: interleukin-8 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of this protein secreted by macrophages which is chemotactic for neutrophils and T cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "IL-8 physiology trait" EXACT [] is_obsolete: true created_by: caripark creation_date: 2010-05-07T01:54:10Z [Term] id: VT:0010154 name: Purkinje cell nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers that connect to the neurons located at the interface of the molecular and internal granule layers of the cerebellar cortex." [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MP:0003894] is_a: VT:0000877 ! Purkinje cell morphology trait is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T03:43:36Z [Term] id: VT:0010155 name: cochlear inner hair cell afferent nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of afferent terminals and/or their synapses in the cochlear IHC region." [MP:0004746] is_a: VT:0004393 ! cochlear inner hair cell morphology trait created_by: caripark creation_date: 2012-02-01T03:57:51Z [Term] id: VT:0010156 name: cytokine physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of any of the non-antibody proteins made by inflammatory leukocytes and some non-leukocytic cells that affect the behavior of other cells." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease", MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T01:55:24Z [Term] id: VT:0010157 name: cochlear inner hair cell efferent nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers to the normally dense plexus of efferent terminals that contact radial fibers of the spiral ganglion below cochlear IHCs or of the sparser plexus of terminals positioned around IHC somata; normally, lateral olivocochlear neurons, which are found in and/or around the lateral superior olive, project mainly to the ipsilateral cochlea and terminate mostly on dendritic fibers below IHCs." [MP:0004633] is_a: VT:0004393 ! cochlear inner hair cell morphology trait created_by: caripark creation_date: 2012-02-01T03:57:51Z [Term] id: VT:0010158 name: interferon physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of any of the cytokines produced by T cells, fibroblasts and other cells in response to a challenge by a foreign agents such as viruses, bacteria, parasites and tumor cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:hdene "Howard Dene, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T01:59:26Z [Term] id: VT:0010159 name: interleukin physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of any of the cytokines produced by leukocytes." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T01:59:59Z [Term] id: VT:0010160 name: tumor necrosis factor-alpha physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of a a serum glycoprotein produced by activated macrophages and NK cells and involved in initiating local inflammatory responses, particularly by its action on the endothelium of local blood vessels; its actions result in increased vascular permeability and induction of expression of adhesion molecules on the endothelium." [MeSH:D12.644.276.374.500.800 "Tumor necrosis factor-alpha"] synonym: "TNF physiology trait" EXACT [] synonym: "TNF-alpha physiology trait" EXACT [] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:02:53Z [Term] id: VT:0010161 name: interleukin-1 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of this soluble factor produced by macrophages/monocytes that activates vascular endothelium and lymphocytes." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:38:34Z [Term] id: VT:0010162 name: interleukin-10 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of this factor that is a co-regulator of mast cell growth and produced by T and B cells." [MGI:pvb "Pierre Vanden Borre, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:38:34Z [Term] id: VT:0010163 name: interleukin-2 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of this cytokine released by helper T cells that stimulates proliferation of T lymphocytes and activated B lymphocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:38:34Z [Term] id: VT:0010164 name: interleukin-6 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of this soluble factor produced by B- and T-cells, with effects on T- and B-cell growth and differentiation, and in acute phase reactions." [ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:38:34Z [Term] id: VT:0010165 name: interleukin-2 activity namespace: Trait.ontology def: "OBSOLETE. The degree of function or response of this cytokine released by helper T cells that stimulates proliferation of T lymphocytes and activated B lymphocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:38:53Z [Term] id: VT:0010166 name: induced interleukin-2 activity namespace: Trait.ontology def: "OBSOLETE. The degree of function or response to an external intervention of the cytokine released by helper T cells that stimulates proliferation of T lymphocytes and activated B lymphocytes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:39:05Z [Term] id: VT:0010167 name: complement protein physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of any of the complement proteins." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:51:06Z [Term] id: VT:0010168 name: C1 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C1." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010169 name: C2 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C2." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010170 name: C3 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C3." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010171 name: C4 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C4." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010172 name: C5 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C5." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010173 name: C6 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C6." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010174 name: C7 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C7." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010175 name: C8 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C8." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010176 name: C9 physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, C9." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010177 name: factor B physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, factor B." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010178 name: factor D physiology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the function of the complement protein, factor D." [MGI:cwg "Carroll-Ann W. Goldsmith, Mouse Genome Informatics Curator"] is_obsolete: true created_by: caripark creation_date: 2010-05-07T02:52:44Z [Term] id: VT:0010179 name: immune system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the organs or cells associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:1000783 ! immune system trait created_by: caripark creation_date: 2010-05-07T03:14:33Z [Term] id: VT:0010180 name: bone marrow cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the cells found in the bone marrow during their formation and differentiation." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0010255 ! hematopoietic system development trait created_by: caripark creation_date: 2010-05-10T08:49:16Z [Term] id: VT:0010181 name: myeloblast development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of cells found in the bone marrow, which eventually give rise to the granulocyte line of blood cells, during their formation and differentiation." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010180 ! bone marrow cell development trait created_by: caripark creation_date: 2010-05-10T08:55:59Z [Term] id: VT:0010182 name: blood cell development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of any of the cells found in the blood during their formation or differentiation." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0010255 ! hematopoietic system development trait created_by: caripark creation_date: 2010-05-10T09:16:34Z [Term] id: VT:0010183 name: platelet morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of disc-like fragments of megakaryocytes that are found in the blood and function in clotting." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "thrombocyte morphology trait" EXACT [] is_a: VT:0002429 ! blood cell morphology trait created_by: caripark creation_date: 2010-05-10T09:18:15Z [Term] id: VT:0010184 name: lymphocyte proliferation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which lymphocyte populations (any of the white blood cells that include B cells, T cells, and NK cells) undergo expansion by cell division." [MP:0003945] is_a: VT:0003945 ! lymphocyte physiology trait is_a: VT:0010417 ! leukocyte proliferation trait created_by: caripark creation_date: 2010-05-10T12:58:46Z [Term] id: VT:0010185 name: cochlear inner hair cell afferent nerve fiber quantity namespace: Trait.ontology def: "The proportion or quantity of afferent terminals and/or their synapses in the cochlear IHC region." [MP:0004746] is_a: VT:0004393 ! cochlear inner hair cell morphology trait created_by: caripark creation_date: 2012-02-01T03:57:51Z [Term] id: VT:0010186 name: cochlear inner hair cell efferent nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers to the normally dense plexus of efferent terminals that contact radial fibers of the spiral ganglion below cochlear IHCs or of the sparser plexus of terminals positioned around IHC somata; normally, lateral olivocochlear neurons, which are found in and/or around the lateral superior olive, project mainly to the ipsilateral cochlea and terminate mostly on dendritic fibers below IHCs." [MP:0004633] is_a: VT:0004393 ! cochlear inner hair cell morphology trait created_by: caripark creation_date: 2012-02-01T03:57:51Z [Term] id: VT:0010187 name: Meissner's corpuscle nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers to any part of the numerous oval bodies found in the dermal papillae of thick skin and which are believed to be mechanoreceptors for tactile sensation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000982 ! Meissner's corpuscle morphology trait created_by: caripark creation_date: 2012-02-01T04:21:07Z [Term] id: VT:0010188 name: Meissner's corpuscle nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of nerve fibers to any part of the numerous oval bodies found in the dermal papillae of thick skin and which are believed to be mechanoreceptors for tactile sensation." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000982 ! Meissner's corpuscle morphology trait created_by: caripark creation_date: 2012-02-01T04:21:07Z [Term] id: VT:0010189 name: muscle nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of sensory or motor nerve fibers to targets in the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002108 ! muscular system morphology trait is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-02-01T04:26:59Z [Term] id: VT:0010190 name: basophil development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of granular leukocytes that are characterized by pale-staining, lobate nucleus and cytoplasm and contain dark-staining granules of varying size and stainable by basic dyes." [MeSH:D001491 "Basophils"] synonym: "basophil differentiation" EXACT [] is_a: VT:0008111 ! granulocyte development trait created_by: caripark creation_date: 2010-05-11T09:41:19Z [Term] id: VT:0010191 name: immune system cell quantity namespace: Trait.ontology def: "The proportion or number of cells associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "immune cell number" EXACT [] is_a: VT:0000716 ! immune system cell morphology trait created_by: caripark creation_date: 2010-05-11T12:46:43Z [Term] id: VT:0010192 name: CD4-negative, CD8-negative, alpha-beta intraepithelial T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD4-negative, CD8-negative, alpha-beta T cell present in columnar epithelia such as in the gastrointestinal tract; intraepithelial T cells often have distinct developmental pathways and activation requirements." [CL:0000935 "CD4-negative, CD8-negative, alpha-beta intraepithelial T cell"] synonym: "CD4-, CD8-, alpha-beta intraepithelial T cell morphology trait" EXACT [] synonym: "CD4-negative, CD8-negative, alpha-beta intraepithelial T lymphocyte morphology trait" EXACT [] synonym: "CD4-negative, CD8-negative, alpha-beta intraepithelial T-cell morphology trait" EXACT [] synonym: "CD4-negative, CD8-negative, alpha-beta intraepithelial T-lymphocyte morphology trait" EXACT [] is_a: VT:0002407 ! double-negative T cell morphology trait is_a: VT:0008399 ! alpha-beta intraepithelial T cell morphology trait created_by: caripark creation_date: 2010-05-12T03:54:35Z [Term] id: VT:0010193 name: colon length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the portion of the large intestine between the cecum and the rectum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0001111 is_a: VT:0002731 ! colon size trait is_a: VT:0010219 ! large intestine length created_by: caripark creation_date: 2010-05-18T09:42:04Z [Term] id: VT:0010194 name: colon mass namespace: Trait.ontology def: "The amount of matter in the portion of the large intestine between the cecum and the rectum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "colon weight" RELATED [] synonym: "tissue weight of the colon " RELATED [] xref: ATOL:0001113 is_a: VT:0002731 ! colon size trait is_a: VT:0010220 ! large intestine mass created_by: caripark creation_date: 2010-05-18T09:43:26Z [Term] id: VT:0010195 name: intestine length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the digestive tube passing from the stomach to the anus." [ATOL:0000558, VTO:INRA "INRA curator"] xref: ATOL:0000558 is_a: VT:0000477 ! intestine morphology trait created_by: caripark creation_date: 2010-05-18T09:47:27Z [Term] id: VT:0010196 name: intestine mass namespace: Trait.ontology def: "The amount of matter in the digestive tube passing from the stomach to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "intestine weight" RELATED [] synonym: "tissue weight of the intestine" EXACT [] xref: ATOL:0000559 is_a: VT:0000477 ! intestine morphology trait created_by: caripark creation_date: 2010-05-18T09:49:33Z [Term] id: VT:0010197 name: duodenum length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the first division of the small intestine that extends from the pyloris to the junction with the jejunum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0001084 is_a: VT:0003271 ! duodenum morphology trait is_a: VT:1000421 ! small intestine length created_by: caripark creation_date: 2010-05-18T09:53:20Z [Term] id: VT:0010198 name: duodenum mass namespace: Trait.ontology def: "The amount of matter in the first division of the small intestine that extends from the pyloris to the junction with the jejunum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "duodenum weight" RELATED [] synonym: "tissue weight of the duodenum" RELATED [] xref: ATOL:0001086 is_a: VT:0003271 ! duodenum morphology trait is_a: VT:0010140 ! small intestine mass created_by: caripark creation_date: 2010-05-18T09:54:49Z [Term] id: VT:0010199 name: stomach capacity namespace: Trait.ontology def: "The volume of or amount contained in the sac-like structure of the digestive canal between the esophagus and the small intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abomasum volume" RELATED [] synonym: "stomach volume" EXACT [] xref: ATOL:0000560 is_a: VT:0003883 ! stomach size trait created_by: caripark creation_date: 2010-05-18T10:05:39Z [Term] id: VT:0010200 name: stomach mass namespace: Trait.ontology def: "The amount of matter in the sac-like structure of the digestive canal between the esophagus and the small intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abomasum weight" RELATED [] synonym: "stomach weight" RELATED [] synonym: "tissue weight of the stomach" RELATED [] xref: ATOL:0000561 is_a: VT:0003883 ! stomach size trait created_by: caripark creation_date: 2010-05-18T10:08:40Z [Term] id: VT:0010201 name: stomach muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the layer of smooth excitable and contractile fibers of the sac-like structure of the digestive canal between the esophagus and the small intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "muscle thickness of the stomach" EXACT [] xref: ATOL:0000562 is_a: VT:0003883 ! stomach size trait created_by: caripark creation_date: 2010-05-18T10:11:22Z [Term] id: VT:0010202 name: stomach epithelium thickness namespace: Trait.ontology def: "The distance between the surfaces of the layer of epithelial cells of the sac-like structure of the digestive canal between the esophagus and the small intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "mucosa thickness of the stomach" RELATED [] synonym: "stomach mucosa thickness" RELATED [] xref: ATOL:0000563 is_a: VT:0000471 ! stomach epithelium morphology trait is_a: VT:0003883 ! stomach size trait created_by: caripark creation_date: 2010-05-18T10:36:32Z [Term] id: VT:0010203 name: proventriculus morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the first muscular and glandular part of the stomach of birds where digestive enzymes are secreted and mixed with food." [ATOL:0000564, VTO:INRA "INRA curator"] xref: ATOL:0000564 is_a: VT:0000462 ! gastrointestinal system morphology trait created_by: caripark creation_date: 2010-05-18T10:49:39Z [Term] id: VT:0010204 name: proventriculus capacity namespace: Trait.ontology def: "The volume of or amount contained in the first muscular and glandular part of the stomach of birds where digestive enzymes are secreted and mixed with food." [ATOL:0000564, VTO:INRA "INRA curator"] synonym: "proventriculus volume" EXACT [] xref: ATOL:0000565 is_a: VT:0010203 ! proventriculus morphology trait created_by: caripark creation_date: 2010-05-18T10:51:21Z [Term] id: VT:0010205 name: proventriculus mass namespace: Trait.ontology def: "The amount of matter in the first muscular and glandular part of the stomach of birds where digestive enzymes are secreted and mixed with food." [ATOL:0000564, VTO:INRA "INRA curator"] synonym: "proventriculus weight" RELATED [] synonym: "tissue weight of the proventriculus" RELATED [] xref: ATOL:0000566 is_a: VT:0010203 ! proventriculus morphology trait created_by: caripark creation_date: 2010-05-18T10:52:28Z [Term] id: VT:0010206 name: proventriculus mucosa thickness namespace: Trait.ontology def: "The distance between the surfaces of the mucosal layer lining the first muscular and glandular part of the stomach of birds where digestive enzymes are secreted and mixed with food." [RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "mucosa thickness of the proventriculus" EXACT [] xref: ATOL:0000567 is_a: VT:0010203 ! proventriculus morphology trait created_by: caripark creation_date: 2010-05-18T10:59:41Z [Term] id: VT:0010207 name: duodenum muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the muscle layer of the first division of the small intestine that extends from the pyloris to the junction with the jejunum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "muscle thickness of the duodenum" EXACT [] xref: ATOL:0001088 is_a: VT:0003271 ! duodenum morphology trait created_by: caripark creation_date: 2010-05-18T11:21:53Z [Term] id: VT:0010208 name: duodenum mucosa thickness namespace: Trait.ontology def: "The distance from between the surfaces of the mucosal layer lining the first division of the small intestine that extends from the pyloris to the junction with the jejunum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "mucosa thickness of the duodenum" EXACT [] xref: ATOL:0001089 is_a: VT:0003271 ! duodenum morphology trait is_a: VT:0010221 ! duodenum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T11:23:59Z [Term] id: VT:0010209 name: duodenum villi length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the finger-like projections of the mucosal layer of the duodenum." [ATOL:0001090, RGD:MS, VTO:INRA "INRA curator"] synonym: "duodenum villi height" EXACT [] synonym: "height of the villi of the duodenum" EXACT [] xref: ATOL:0001090 is_a: VT:0003271 ! duodenum morphology trait is_a: VT:0010221 ! duodenum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T11:26:12Z [Term] id: VT:0010210 name: duodenum crypt of Lieberkuhn depth namespace: Trait.ontology def: "The distance between the inferior and superior edges of any of the straight tubular glands located in the epithelial layer of the intestine between the bases of the villi of the duodenum." [ATOL:0001091, ATOL:0001819, VTO:INRA "INRA curator"] synonym: "depth of the glandular crypts of the duodenum" EXACT [] synonym: "duodenum glandular crypt depth" EXACT [] xref: ATOL:0001091 is_a: VT:0000490 ! crypt of Lieberkuhn morphology trait is_a: VT:0003271 ! duodenum morphology trait is_a: VT:0010221 ! duodenum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T12:15:05Z [Term] id: VT:0010211 name: duodenum crypt of Lieberkuhn width namespace: Trait.ontology def: "The distance from side to side of the straight tubular glands located in the epithelial layer of the intestine between the bases of the villi of the duodenum." [ATOL:0001092, ATOL:0001819, VTO:INRA "INRA curator"] synonym: "duodenum glandular crypt width" EXACT [] synonym: "width of the glandular crypts of the duodenum" EXACT [] xref: ATOL:0001092 is_a: VT:0000490 ! crypt of Lieberkuhn morphology trait is_a: VT:0003271 ! duodenum morphology trait is_a: VT:0010221 ! duodenum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T12:17:08Z [Term] id: VT:0010212 name: jejunum length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the portion of the small intestine that extends from the duodenum to the ileum." [ATOL:0001093, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0001093 is_a: VT:0004002 ! jejunum morphology trait is_a: VT:1000421 ! small intestine length created_by: caripark creation_date: 2010-05-18T12:32:04Z [Term] id: VT:0010213 name: jejunum mass namespace: Trait.ontology def: "The amount of matter in the portion of the small intestine that extends from the duodenum to the ileum." [MS:RGD, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "jejunum weight" RELATED [] synonym: "tissue weight of the jejunum" RELATED [] xref: ATOL:0001095 is_a: VT:0004002 ! jejunum morphology trait is_a: VT:0010140 ! small intestine mass created_by: caripark creation_date: 2010-05-18T12:33:17Z [Term] id: VT:0010214 name: jejunum muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the muscle layer of the portion of the small intestine that extends from the duodenum to the ileum." [ATOL:0001097, RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "muscle thickness of the jejunum" EXACT [] xref: ATOL:0001097 is_a: VT:0004002 ! jejunum morphology trait created_by: caripark creation_date: 2010-05-18T12:35:18Z [Term] id: VT:0010215 name: jejunum mucosa thickness namespace: Trait.ontology def: "The distance between the surfaces of the mucosal layer lining the portion of the small intestine that extends from the duodenum to the ileum." [ATOL:0001098, RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "mucosa thickness of the jejunum" EXACT [] xref: ATOL:0001098 is_a: VT:0004002 ! jejunum morphology trait is_a: VT:0010222 ! jejunum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T12:35:18Z [Term] id: VT:0010216 name: jejunum villi length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the finger-like projections of the mucosal cell layer of the jejunum." [ATOL:0001099, RGD:MS, VTO:INRA "INRA curator"] synonym: "height of the villi of the jejunum" EXACT [] synonym: "jejunum villi height" EXACT [] xref: ATOL:0001099 is_a: VT:0004002 ! jejunum morphology trait is_a: VT:0010222 ! jejunum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T12:35:18Z [Term] id: VT:0010217 name: jejunum crypt of Lieberkuhn depth namespace: Trait.ontology def: "The distance between the inferior and superior edges of the straight tubular glands located in the epithelial layer of the intestine between the bases of the villi of the jejunum." [ATOL:0000569, VTO:INRA "INRA curator"] synonym: "depth of the glandular crypts of the jejunum" EXACT [] synonym: "jejunum glandular crypt depth" EXACT [] xref: ATOL:0000569 is_a: VT:0000490 ! crypt of Lieberkuhn morphology trait is_a: VT:0004002 ! jejunum morphology trait is_a: VT:0010222 ! jejunum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T12:35:18Z [Term] id: VT:0010218 name: jejunum crypt of Lieberkuhn width namespace: Trait.ontology def: "The distance from side to side of the straight tubular glands located in the epithelial layer of the intestine between the bases of the villi of the jejunum." [ATOL:0000570, VTO:INRA "INRA curator"] synonym: "jejunum glandular crypt width" EXACT [] synonym: "width of the glandular crypts of the jejunum" EXACT [] xref: ATOL:0000570 is_a: VT:0000490 ! crypt of Lieberkuhn morphology trait is_a: VT:0004002 ! jejunum morphology trait is_a: VT:0010222 ! jejunum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T12:35:18Z [Term] id: VT:0010219 name: large intestine length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the distal portion of the digestive tube that extends from the ileocecal valve to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0001102 is_a: VT:0000489 ! large intestine morphology trait is_a: VT:0010195 ! intestine length created_by: caripark creation_date: 2010-05-18T12:45:42Z [Term] id: VT:0010220 name: large intestine mass namespace: Trait.ontology def: "The amount of matter in the distal portion of the digestive tube that extends from the ileocecal valve to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "large intestine weight" RELATED [] synonym: "tissue weight of the large intestine" RELATED [] xref: ATOL:0001104 is_a: VT:0000489 ! large intestine morphology trait is_a: VT:0010196 ! intestine mass created_by: caripark creation_date: 2010-05-18T12:49:45Z [Term] id: VT:0010221 name: duodenum mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mucous lining of the first division of the small intestine that extends from the pyloris to the junction with the jejunum; this consists of epithelium, lamina propria, and a layer of smooth muscle cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000511 ! intestinal mucosa morphology trait created_by: caripark creation_date: 2010-05-18T01:14:20Z [Term] id: VT:0010222 name: jejunum mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mucous lining of the portion of the small intestine that extends from the duodenum to the ileum; this consists of epithelium, lamina propria, and a layer of smooth muscle cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0000511 ! intestinal mucosa morphology trait created_by: caripark creation_date: 2010-05-18T01:14:20Z [Term] id: VT:0010223 name: ileum mucosa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the mucous lining of the portion of the small intestine that extends from the jejunum to the colon; this consists of epithelium, lamina propria, and a layer of smooth muscle cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000511 ! intestinal mucosa morphology trait created_by: caripark creation_date: 2010-05-18T01:14:20Z [Term] id: VT:0010224 name: ileum length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the portion of the small intestine that extends from the jejunum to the colon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000571 is_a: VT:0002581 ! ileum morphology trait is_a: VT:1000421 ! small intestine length created_by: caripark creation_date: 2010-05-18T01:29:40Z [Term] id: VT:0010225 name: ileum mass namespace: Trait.ontology def: "The amount of matter in the portion of the small intestine that extends from the jejunum to the colon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "ileum weight" RELATED [] synonym: "tissue weight of the ileum" RELATED [] xref: ATOL:0000572 is_a: VT:0002581 ! ileum morphology trait is_a: VT:0010140 ! small intestine mass created_by: caripark creation_date: 2010-05-18T01:30:45Z [Term] id: VT:0010226 name: ileum muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the muscle layer of the portion of the small intestine that extends from the jejunum to the colon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "muscle thickness of the ileum" EXACT [] xref: ATOL:0000573 is_a: VT:0002581 ! ileum morphology trait created_by: caripark creation_date: 2010-05-18T01:32:06Z [Term] id: VT:0010227 name: ileum mucosa thickness namespace: Trait.ontology def: "The distance between the surfaces of the portion of the small intestine that extends from the jejunum to the colon." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "mucosa thickness of the ileum" EXACT [] xref: ATOL:0000574 is_a: VT:0002581 ! ileum morphology trait is_a: VT:0010223 ! ileum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T01:39:19Z [Term] id: VT:0010228 name: ileum villi length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the finger-like projections of the mucosal cell layer of the ileum." [ATOL:0000575, RGD:MS, VTO:INRA "INRA curator"] synonym: "height of the villi of the ileum" RELATED [] synonym: "ileum villi height" RELATED [] xref: ATOL:0000575 is_a: VT:0002581 ! ileum morphology trait is_a: VT:0010223 ! ileum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T01:39:19Z [Term] id: VT:0010229 name: ileum crypt of Lieberkuhn depth namespace: Trait.ontology def: "The distance between the inferior and superior edges of the straight tubular glands located in the epithelial layer of the intestine between the bases of the villi of the ileum." [ATOL:0000576, VTO:INRA "INRA curator"] synonym: "depth of the glandular crypts of the ileum" EXACT [] synonym: "ileum glandular crypt depth" EXACT [] xref: ATOL:0000576 is_a: VT:0000490 ! crypt of Lieberkuhn morphology trait is_a: VT:0002581 ! ileum morphology trait is_a: VT:0010223 ! ileum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T01:39:19Z [Term] id: VT:0010230 name: ileum crypt of Lieberkuhn width namespace: Trait.ontology def: "The distance from side to side of the straight tubular glands located in the epithelial layer of the intestine between the bases of the villi of the ileum." [ATOL:0000577, VTO:INRA "INRA curator"] synonym: "ileum glandular crypt width" EXACT [] synonym: "width of the glandular crypts of the ileum" EXACT [] xref: ATOL:0000577 is_a: VT:0000490 ! crypt of Lieberkuhn morphology trait is_a: VT:0002581 ! ileum morphology trait is_a: VT:0010223 ! ileum mucosa morphology trait created_by: caripark creation_date: 2010-05-18T01:39:19Z [Term] id: VT:0010231 name: colon muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the muscle surrounding the portion of the large intestine between the cecum and the rectum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "muscle thickness of the colon" EXACT [] xref: ATOL:0001115 is_a: VT:0002731 ! colon size trait created_by: caripark creation_date: 2010-05-18T01:56:41Z [Term] id: VT:0010232 name: colon mucosa thickness namespace: Trait.ontology def: "The distance between the surfaces of the mucosal layer lining the portion of the large intestine between the cecum and the rectum." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "mucosa thickness of the colon" EXACT [] xref: ATOL:0001116 is_a: VT:0002731 ! colon size trait created_by: caripark creation_date: 2010-05-18T01:58:45Z [Term] id: VT:0010233 name: cecum muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the muscle surrounding the large sac at the ileum and large intestine junction." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "muscle thickness of the cecum" EXACT [] xref: ATOL:0001109 is_a: VT:0000494 ! cecum morphology trait created_by: caripark creation_date: 2010-05-18T02:00:46Z [Term] id: VT:0010234 name: cecum mucosa thickness namespace: Trait.ontology def: "The distance between the surfaces of the mucosal layer lining the large sac at the ileum and large intestine junction." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] synonym: "mucosa thickness of the cecum" EXACT [] xref: ATOL:0001110 is_a: VT:0000494 ! cecum morphology trait created_by: caripark creation_date: 2010-05-18T02:00:46Z [Term] id: VT:0010235 name: forestomach morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the large fermentation chamber situated anteriorly to the stomach in some species." [ATOL:0000578, VTO:INRA "INRA curator"] xref: ATOL:0000578 is_a: VT:0000462 ! gastrointestinal system morphology trait created_by: caripark creation_date: 2010-05-18T02:21:33Z [Term] id: VT:0010236 name: forestomach capacity namespace: Trait.ontology def: "The volume of or amount contained in the large fermentation chamber situated anteriorly to the stomach in some species." [ATOL:0000578, VTO:INRA "INRA curator"] synonym: "forestomach volume" EXACT [] xref: ATOL:0000568 is_a: VT:0010235 ! forestomach morphology trait created_by: caripark creation_date: 2010-05-18T02:23:08Z [Term] id: VT:0010237 name: forestomach mass namespace: Trait.ontology def: "The amount of matter in the large fermentation chamber situated anteriorly to the stomach in some species." [ATOL:0000578, VTO:INRA "INRA curator"] synonym: "forestomach weight" RELATED [] synonym: "tissue weight of the forestomach" RELATED [] xref: ATOL:0000579 is_a: VT:0010235 ! forestomach morphology trait created_by: caripark creation_date: 2010-05-18T02:24:09Z [Term] id: VT:0010238 name: crop morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the esophageal anatomical diverticulum in some species." [ATOL:0000580, VTO:INRA "INRA curator"] xref: ATOL:0000580 is_a: VT:0000462 ! gastrointestinal system morphology trait created_by: caripark creation_date: 2010-05-18T02:27:52Z [Term] id: VT:0010239 name: crop mass namespace: Trait.ontology def: "The amount of matter in the esophageal anatomical diverticulum in some species." [ATOL:0000581, MS:RGD, VTO:INRA "INRA curator"] synonym: "crop weight" RELATED [] synonym: "tissue weight of the crop" RELATED [] xref: ATOL:0000581 is_a: VT:0010238 ! crop morphology trait created_by: caripark creation_date: 2010-05-18T02:29:52Z [Term] id: VT:0010240 name: reticulo-rumen morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the first two compartments of the forestomach of ruminants, composed of the reticulum and the rumen which communicates anteriorly with the oesophagus and posteriorly with the omasum." [VTO:INRA "INRA curator"] synonym: "reticulorumen morphology trait" EXACT [] synonym: "rumen morphology trait" NARROW [] is_a: VT:0010235 ! forestomach morphology trait created_by: caripark creation_date: 2010-05-19T08:32:21Z [Term] id: VT:0010241 name: reticulo-rumen capacity namespace: Trait.ontology def: "The volume of or amount contained in the forestomach of ruminants, composed of the reticulum and the rumen which communicates anteriorly with the esophagus and posteriorly with the omasum." [VTO:INRA "INRA curator"] synonym: "reticulo-rumen volume" EXACT [] synonym: "reticulorumen volume" EXACT [] synonym: "rumen volume" NARROW [] is_a: VT:0010236 ! forestomach capacity is_a: VT:0010240 ! reticulo-rumen morphology trait created_by: caripark creation_date: 2010-05-19T08:44:20Z [Term] id: VT:0010242 name: reticulo-rumen mass namespace: Trait.ontology def: "The amount of matter in the forestomach of ruminants, composed of the reticulum and the rumen which communicates anteriorly with the oesophagus and posteriorly with the omasum." [VTO:INRA "INRA curator"] synonym: "reticulo-rumen weight" RELATED [] synonym: "reticulorumen weight" EXACT [] synonym: "rumen weight" NARROW [] synonym: "tissue weight of the reticulo-rumen" RELATED [] synonym: "tissue weight of the rumen" NARROW [] is_a: VT:0010237 ! forestomach mass is_a: VT:0010240 ! reticulo-rumen morphology trait created_by: caripark creation_date: 2010-05-19T08:49:24Z [Term] id: VT:0010243 name: reticulo-rumen epithelium thickness namespace: Trait.ontology def: "The distance between the surfaces of the layer of membranous tissue that lines the internal surface of the reticulo-rumen." [RGD:MS, VTO:INRA "INRA curator"] synonym: "epithelium thickness of the reticulo-rumen" EXACT [] synonym: "epithelium thickness of the rumen" NARROW [] synonym: "reticulorumen epithelium thickness" EXACT [] is_a: VT:0010240 ! reticulo-rumen morphology trait created_by: caripark creation_date: 2010-05-19T09:01:13Z [Term] id: VT:0010244 name: rumen papillae morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the small, finger-like projections of the surface epithelial layer in the rumen." [ATOL:0000586, VTO:INRA "INRA curator"] xref: ATOL:0000586 is_a: VT:0010240 ! reticulo-rumen morphology trait created_by: caripark creation_date: 2010-05-19T09:05:46Z [Term] id: VT:0010245 name: omasum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the third forestomach of ruminants which connects the reticulum to the abomasum." [ATOL:0000587, VTO:INRA "INRA curator"] xref: ATOL:0000587 is_a: VT:0010235 ! forestomach morphology trait created_by: caripark creation_date: 2010-05-19T09:07:50Z [Term] id: VT:0010246 name: omasum capacity namespace: Trait.ontology def: "The volume of or amount contained in the third forestomach of ruminants which connects the reticulum to the abomasum." [ATOL:0000588, RGD:MS, VTO:INRA "INRA curator"] synonym: "omasum volume" EXACT [] xref: ATOL:0000588 is_a: VT:0010236 ! forestomach capacity is_a: VT:0010245 ! omasum morphology trait created_by: caripark creation_date: 2010-05-19T09:09:16Z [Term] id: VT:0010247 name: omasum mass namespace: Trait.ontology def: "The amount of matter in the third forestomach in ruminants which connects the reticulum to the abomasum." [ATOL:0000589, VTO:INRA "INRA curator"] synonym: "omasum weight" RELATED [] synonym: "tissue weight of the omasum" RELATED [] xref: ATOL:0000589 is_a: VT:0010237 ! forestomach mass is_a: VT:0010245 ! omasum morphology trait created_by: caripark creation_date: 2010-05-19T09:10:47Z [Term] id: VT:0010248 name: hemolymphoid system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the blood forming organs and tissues and the system of lymphoid channels and tissues that drains extracellular fluid from the periphery via the thoracic duct to the blood." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "haemolymphoid system trait" EXACT [] synonym: "hematolymphoid system trait" EXACT [] synonym: "hemolymphatic system trait" EXACT [] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2010-05-19T10:57:30Z [Term] id: VT:0010249 name: blood cell physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in any of the cells found in the blood." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0010254 ! hematopoietic system physiology trait created_by: caripark creation_date: 2010-05-19T11:35:38Z [Term] id: VT:0010250 name: hematopoietic system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of cells found in the blood and/or the blood-forming organs and tissues." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "hemopoietic system trait" EXACT [] is_a: VT:0010252 ! hemolymphoid system morphology trait created_by: caripark creation_date: 2010-05-19T02:08:38Z [Term] id: VT:0010251 name: hemolymphoid system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the blood forming organs and tissues and the system of lymphoid channels and tissues that drains extracellular fluid from the periphery via the thoracic duct to the blood." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "haemolymphoid system development trait" EXACT [] synonym: "hematolymphoid system development trait" EXACT [] synonym: "hemolymphatic system development trait" EXACT [] is_a: VT:0010248 ! hemolymphoid system trait created_by: caripark creation_date: 2010-05-19T02:16:10Z [Term] id: VT:0010252 name: hemolymphoid system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the blood forming organs and tissues and the system of lymphoid channels and tissues that drains extracellular fluid from the periphery via the thoracic duct to the blood." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "haemolymphoid system morphology trait" EXACT [] synonym: "hematolymphoid system morphology trait" EXACT [] synonym: "hemolymphatic system morphology trait" EXACT [] is_a: VT:0010248 ! hemolymphoid system trait created_by: caripark creation_date: 2010-05-19T02:16:25Z [Term] id: VT:0010253 name: hemolymphoid system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the blood forming organs and tissues and the system of lymphoid channels and tissues that drains extracellular fluid from the periphery via the thoracic duct to the blood." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", ISBN:0-8153-1691-7 "Immunobiology, The Immune System in Health and Disease"] synonym: "haemolymphoid system physiology trait" EXACT [] synonym: "hematolymphoid system physiology trait" EXACT [] synonym: "hemolymphatic system physiology trait" EXACT [] is_a: VT:0010248 ! hemolymphoid system trait created_by: caripark creation_date: 2010-05-19T02:16:49Z [Term] id: VT:0010254 name: hematopoietic system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the cells found in the blood and/or the blood-forming organs and tissues." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "hemopoietic system physiology trait" EXACT [] is_a: VT:0010253 ! hemolymphoid system physiology trait created_by: caripark creation_date: 2010-05-19T02:22:32Z [Term] id: VT:0010255 name: hematopoietic system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the cells found in the blood and/or the blood-forming organs and tissues." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "hemopoietic system development trait" EXACT [] is_a: VT:0010251 ! hemolymphoid system development trait created_by: caripark creation_date: 2010-05-19T02:25:32Z [Term] id: VT:0010256 name: colostrum trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the first secretion of the mammary gland before milk production; provides energy and passive immunity to newborn offspring." [ATOL:0000590, VTO:INRA "INRA curator"] xref: ATOL:0000590 is_a: VT:0010433 ! milk fatty acid trans-16-C18:1 amount created_by: caripark creation_date: 2010-05-19T03:36:39Z [Term] id: VT:0010257 name: colostrum immunoglobulin amount namespace: Trait.ontology def: "The proportion, quantity, or volume of proteins that function as a primary mechanism for protection against disease present in the first secretion of the mammary gland before milk production." [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0000591 is_a: VT:0010256 ! colostrum trait created_by: caripark creation_date: 2010-05-19T03:47:57Z [Term] id: VT:0010258 name: colostrum immunoglobulin A amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of the principal immunoglobulin in exocrine secretions." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "colostrum immunoglobulin A concentration" EXACT [] xref: ATOL:0000592 is_a: VT:0010257 ! colostrum immunoglobulin amount created_by: caripark creation_date: 2010-05-19T04:01:54Z [Term] id: VT:0010259 name: colostrum immunoglobulin G amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of the major antibody for antitoxins, viruses, and bacteria; also activates complement." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "colostrum IgG content" EXACT [] synonym: "colostrum immunoglobulin G concentration" EXACT [] xref: ATOL:0000593 is_a: VT:0010257 ! colostrum immunoglobulin amount created_by: caripark creation_date: 2010-05-19T04:04:14Z [Term] id: VT:0010260 name: colostrum immunoglobulin M amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of an immunoglobulin formed during the early period of an immune response; also stimulates complement activity." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "colostrum IgM content" EXACT [] synonym: "colostrum immunoglobulin M concentration" EXACT [] xref: ATOL:0000594 is_a: VT:0010257 ! colostrum immunoglobulin amount created_by: caripark creation_date: 2010-05-19T04:07:18Z [Term] id: VT:0010261 name: milk fat amount namespace: Trait.ontology def: "Any measurable or observable characteristic related to the proportion, quantity, or volume of butterfat present in milk." [ATOL:0001520, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fat content" EXACT [] xref: ATOL:0001520 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-19T04:15:04Z [Term] id: VT:0010262 name: muscle nerve fiber quantity namespace: Trait.ontology def: "The proportion or quantity of sensory or motor nerve fibers to targets in the tissue composed of contractile cells or fibers that effects movement of an organ or part of the body." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0002108 ! muscular system morphology trait is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-02-01T04:26:59Z [Term] id: VT:0010263 name: erythrocyte precursor morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the immature erythrocyte precursors." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002398 ! bone marrow cell morphology trait created_by: caripark creation_date: 2010-05-20T11:18:06Z [Term] id: VT:0010264 name: colostrum amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the thin, yellow, milky fluid secreted by the mammary gland, before or after parturition, preceding the production of milk." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "colostrum volume" EXACT [] synonym: "colostrum yield" RELATED [] is_a: VT:0010256 ! colostrum trait created_by: caripark creation_date: 2010-05-20T03:30:45Z [Term] id: VT:0010265 name: colostrum somatic cell quantity namespace: Trait.ontology def: "The proportion or number of somatic cells (leukocytes and epithelial cells) present in colostrum." [ATOL:0000597, RGD :MS, VTO:INRA "INRA curator"] synonym: "colostrum somatic cell count" EXACT [] synonym: "colostrum somatic cell number" EXACT [] xref: ATOL:0000597 is_a: VT:0010256 ! colostrum trait created_by: caripark creation_date: 2010-05-20T03:34:56Z [Term] id: VT:0010266 name: milk beta-lactoglobulin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of beta-lactoglobulin, which may bind retinol; this milk constituent is allergenic." [ATOL:0000598, VTO:INRA "INRA curator"] synonym: "milk beta-lactoglobulin concentration" RELATED [] synonym: "milk beta-lactoglobulin content" EXACT [] xref: ATOL:0000598 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-20T04:06:39Z [Term] id: VT:0010267 name: milk whey acidic protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of whey acidic protein (WAP), a major protein of whey in rodents and rabbits (as well as marsupials), which belongs to the four disulfide core family." [ATOL:0000599, VTO:INRA "INRA curator"] synonym: "milk WAP content" RELATED [] synonym: "milk whey acidic protein concentration" RELATED [] synonym: "milk whey acidic protein content" EXACT [] xref: ATOL:0000599 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-20T04:09:37Z [Term] id: VT:0010268 name: milk lactoferrin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of lactoferrin, a globular multifunctional protein with antimicrobial activity; part of innate defense." [ATOL:0000600, VTO:INRA "INRA curator"] synonym: "milk lactoferrin concentration" RELATED [] synonym: "milk lactoferrin content" EXACT [] xref: ATOL:0000600 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-20T04:09:37Z [Term] id: VT:0010269 name: colostrum hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of chemical substances produced by an organ, cells of an organ, or scattered cells, having a specific regulatory effect on the activity of an organ or organs." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "colostrum hormone concentration" RELATED [] xref: ATOL:0000601 is_a: VT:0010256 ! colostrum trait created_by: caripark creation_date: 2010-05-21T09:27:13Z [Term] id: VT:0010270 name: colostrum steroid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of members of the hormone family that includes estrogens, progesterone, glucocorticoids, and androgens." [ATOL:0000602, VTO:INRA "INRA curator"] synonym: "colostrum steroid concentration" RELATED [] xref: ATOL:0000602 is_a: VT:0010269 ! colostrum hormone amount created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: VT:0010271 name: colostrum leptin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of the peptide hormone secreted by white adipocytes and believed to regulate food intake and energy balance." [ATOL:0000603, VTO:INRA "INRA curator"] synonym: "colostrum leptin concentration" RELATED [] xref: ATOL:0000603 is_a: VT:0010269 ! colostrum hormone amount created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: VT:0010272 name: colostrum prolactin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of the hormone that stimulates milk secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "colostrum prolactin concentration" RELATED [] xref: ATOL:0000604 is_a: VT:0010269 ! colostrum hormone amount created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: VT:0010273 name: colostrum growth factor amount namespace: Trait.ontology def: "The proportion, quantity, or volume in colostrum of any factors which promote cell proliferation." [ATOL:0000605, VTO:INRA "INRA curator"] synonym: "colostrum growth hormone concentration" RELATED [] xref: ATOL:0000605 is_a: VT:0010269 ! colostrum hormone amount created_by: caripark creation_date: 2010-05-21T09:59:08Z [Term] id: VT:0010274 name: ear orientation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location or arrangement of the outer ears in relation to each other or to the skull." [MP:0000023] is_a: VT:0002177 ! outer ear morphology trait created_by: caripark creation_date: 2012-02-10T01:26:31Z [Term] id: VT:0010275 name: milk hormone amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of any substance, usually a peptide or steroid, that has a specific metabolic regulatory effect on the activity or behavior of cells expressing a receptor for the hormone." [ATOL:0000607, MP:0003953, VTO:INRA "INRA curator"] synonym: "hormones in milk" RELATED [] synonym: "milk hormone concentration" RELATED [] synonym: "milk hormone content" EXACT [] xref: ATOL:0000607 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-21T11:21:36Z [Term] id: VT:0010276 name: milk steroid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of members of the hormone family that includes estrogens, progesterone, glucocorticoids, and androgens." [ATOL:0000608, VTO:INRA "INRA curator"] synonym: "milk steroid concentration" RELATED [] synonym: "milk steroid content" EXACT [] xref: ATOL:0000608 is_a: VT:0010275 ! milk hormone amount created_by: caripark creation_date: 2010-05-21T11:26:27Z [Term] id: VT:0010277 name: milk leptin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of the peptide hormone secreted by white adipocytes and believed to regulate food intake and energy balance." [ATOL:0000609, MP:0005667, VTO:INRA "INRA curator"] synonym: "milk leptin concentration" RELATED [] synonym: "milk leptin content" EXACT [] xref: ATOL:0000609 is_a: VT:0010275 ! milk hormone amount created_by: caripark creation_date: 2010-05-21T11:26:27Z [Term] id: VT:0010278 name: milk prolactin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of the hormone that stimulates milk secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "milk prolactin concentration" RELATED [] synonym: "milk prolactin content" EXACT [] xref: ATOL:0000610 is_a: VT:0010275 ! milk hormone amount created_by: caripark creation_date: 2010-05-21T11:26:27Z [Term] id: VT:0010279 name: milk growth factor amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of any factors which promote cell proliferation." [ATOL:0000611, VTO:INRA "INRA curator"] synonym: "milk growth factor concentration" RELATED [] synonym: "milk growth factor content" EXACT [] xref: ATOL:0000611 is_a: VT:0010275 ! milk hormone amount created_by: caripark creation_date: 2010-05-21T11:26:27Z [Term] id: VT:0010280 name: milk casein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of casein, the predominant phosphoprotein in milk." [ATOL:0000612, VTO:INRA "INRA curator"] comment: accounts for nearly 80% of the protein in cow's milk and cheese synonym: "milk casein concentration" RELATED [] synonym: "milk casein content" EXACT [] xref: ATOL:0000612 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-21T12:20:10Z [Term] id: VT:0010281 name: milk alpha-S1-casein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of the most abundant casein in the milk of ruminants and rabbits." [ATOL:0000613, VTO:INRA "INRA curator"] synonym: "milk alpha-S1-casein concentration" RELATED [] synonym: "milk alpha-S1-casein content" EXACT [] xref: ATOL:0000613 is_a: VT:0010280 ! milk casein amount created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: VT:0010282 name: milk alpha-S2-casein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of alpa-S2-casein, a minor form of casein." [ATOL:0000614, VTO:INRA "INRA curator"] synonym: "milk alpha-S2-casein concentration" RELATED [] synonym: "milk alpha-S2-casein content" EXACT [] xref: ATOL:0000614 is_a: VT:0010280 ! milk casein amount created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: VT:0010283 name: milk kappa-casein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of kappa-casein, a casein which plays a crucial role in micellar structure; its concentration determines micellar size." [ATOL:0000615, VTO:INRA "INRA curator"] synonym: "milk kappa-casein concentration" RELATED [] synonym: "milk kappa-casein content" EXACT [] xref: ATOL:0000615 is_a: VT:0010280 ! milk casein amount created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: VT:0010284 name: milk beta-casein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of beta-casein in milk." [ATOL:0000616, VTO:INRA "INRA curator"] synonym: "milk beta-casein concentration" RELATED [] synonym: "milk beta-casein content" EXACT [] xref: ATOL:0000616 is_a: VT:0010280 ! milk casein amount created_by: caripark creation_date: 2010-05-21T12:27:38Z [Term] id: VT:0010285 name: milk nitrogen amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this element in milk." [ATOL:0001521, VTO:INRA "INRA curator"] synonym: "milk nitrogen" RELATED [] synonym: "milk nitrogen concentration" RELATED [] synonym: "milk nitrogen content" EXACT [] xref: ATOL:0001521 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-21T02:13:16Z [Term] id: VT:0010286 name: motor nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic arrangement of the nerve fibers that convey impulses from the central nervous system to stimulate muscle contraction or glandular secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-03-19T12:48:25Z [Term] id: VT:0010287 name: milk lactose amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of lactose, the major sugar found in colostrum and milk; it is composed of one molecule of glucose and one molecule of galactose." [ATOL:0000619, VTO:INRA "INRA curator"] synonym: "milk lactose concentration" RELATED [] synonym: "milk lactose content" EXACT [] xref: ATOL:0000619 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-21T02:24:28Z [Term] id: VT:0010288 name: milk mineral amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of any inorganic element or compound that has importance in body functions." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "milk mineral concentration" RELATED [] synonym: "milk mineral content" EXACT [] xref: ATOL:0000620 is_a: VT:0000192 ! mineral amount is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-21T02:44:27Z [Term] id: VT:0010289 name: motor nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers that convey impulses from the central nervous system to stimulate muscle contraction or glandular secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-03-19T12:53:36Z [Term] id: VT:0010290 name: milk calcium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this metallic element." [ATOL:0000622, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk calcium concentration" RELATED [] synonym: "milk calcium content" EXACT [] xref: ATOL:0000622 is_a: VT:0010288 ! milk mineral amount created_by: caripark creation_date: 2010-05-21T02:58:45Z [Term] id: VT:0010291 name: milk potassium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this metallic element." [ATOL:0000623, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk potassium concentration" RELATED [] synonym: "milk potassium content" EXACT [] xref: ATOL:0000623 is_a: VT:0010288 ! milk mineral amount created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: VT:0010292 name: milk sodium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this metallic element." [ATOL:0000624, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk sodium concentration" RELATED [] synonym: "milk sodium content" EXACT [] xref: ATOL:0000624 is_a: VT:0010288 ! milk mineral amount created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: VT:0010293 name: milk phosphorus amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this nonmetallic element which occurs naturally in phosphates." [ATOL:0000625, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk phosphorus concentration" RELATED [] synonym: "milk phosphorus content" EXACT [] xref: ATOL:0000625 is_a: VT:0010288 ! milk mineral amount created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: VT:0010294 name: milk chloride amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of any binary compound of chlorine." [ATOL:0000626, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk chloride concentration" RELATED [] synonym: "milk chloride content" EXACT [] xref: ATOL:0000626 is_a: VT:0010288 ! milk mineral amount created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: VT:0010295 name: milk magnesium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this metallic element." [ATOL:0000627, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk magnesium concentration" RELATED [] synonym: "milk magnesium content" EXACT [] xref: ATOL:0000627 is_a: VT:0010288 ! milk mineral amount created_by: caripark creation_date: 2010-05-21T03:03:34Z [Term] id: VT:0010296 name: sympathetic nerve fiber quantity namespace: Trait.ontology def: "The proportion or number of nerve fibers to sympathetic termini." [MP:0009284] is_a: VT:0010143 ! nerve fiber quantity created_by: caripark creation_date: 2012-03-19T12:56:56Z [Term] id: VT:0010297 name: sympathetic nerve fiber organization trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the systematic organization of nerve fibers to sympathetic termini." [MP:0009284] is_a: VT:0010142 ! nerve fiber organization trait created_by: caripark creation_date: 2012-03-19T12:57:31Z [Term] id: VT:0010298 name: heart ventricle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the lower chamber(s) of the heart." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0005294 ! heart ventricle morphology trait is_a: VT:0005406 ! heart size trait created_by: caripark creation_date: 2012-05-22T09:47:52Z [Term] id: VT:0010299 name: angiogenesis namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of blood vessel formation and remodeling, following initial formation of the vascular network." [MP:0000260, PMID:9109485] is_a: VT:0000122 ! blood vessel development trait created_by: caripark creation_date: 2012-06-15T01:47:00Z [Term] id: VT:0010300 name: vasculogenesis namespace: Trait.ontology def: "Any measurable or observable characteristic related to the initial establishment of the vascular network." [MP:0001622] is_a: VT:0000122 ! blood vessel development trait created_by: caripark creation_date: 2012-06-15T01:47:00Z [Term] id: VT:0010301 name: heart physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the hollow, muscular organ that pumps blood through the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0001544 ! cardiovascular system physiology trait created_by: caripark creation_date: 2012-06-15T01:50:42Z [Term] id: VT:0010302 name: blood uric acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a crystalline acid occurring as an end product of purine metabolism." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0015078 ! blood homeostasis trait created_by: caripark creation_date: 2012-07-10T11:09:27Z [Term] id: VT:0010303 name: milk fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of straight chain monocarboxylic acids naturally occurring in fats found in milk fat; they are saturated and unsaturated." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "milk fatty acid concentration" RELATED [] synonym: "milk fatty acid content" EXACT [] is_a: VT:0010046 ! fatty acid amount is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-24T09:11:45Z [Term] id: VT:0010304 name: milk saturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of straight chain monocarboxylic acids without double bonds in their chains found in milk fat." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "milk saturated fatty acid content" EXACT [] is_a: VT:0010303 ! milk fatty acid amount created_by: caripark creation_date: 2010-05-24T09:17:14Z [Term] id: VT:0010305 name: milk unsaturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of straight chain monocarboxylic acids with one or more double or triple carbon-carbon bonds found in milk fat." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] synonym: "milk unsaturated fatty acid content" EXACT [] is_a: VT:0010303 ! milk fatty acid amount created_by: caripark creation_date: 2010-05-24T09:18:07Z [Term] id: VT:0010306 name: milk fatty acid C4:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a four-carbon backbone." [ATOL:0000638, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk butyric acid concentration" EXACT [] synonym: "milk butyric acid content" RELATED [] synonym: "milk butyric acid percentage" RELATED [] synonym: "milk fatty acid C4:0 concentration" RELATED [] synonym: "milk fatty acid C4:0 percentage" RELATED [] xref: ATOL:0000638 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010307 name: milk fatty acid C5:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a five-carbon backbone." [ATOL:0000639, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C5:0 concentration" RELATED [] synonym: "milk fatty acid C5:0 percentage" RELATED [] xref: ATOL:0000639 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010308 name: milk fatty acid C6:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a six-carbon backbone." [ATOL:0000640, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk caproic acid concentration" EXACT [] synonym: "milk caproic acid content" RELATED [] synonym: "milk caproic acid percentage" RELATED [] synonym: "milk fatty acid C6:0 concentration" RELATED [] synonym: "milk fatty acid C6:0 percentage" RELATED [] xref: ATOL:0000640 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010309 name: milk fatty acid C7:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a seven-carbon backbone." [ATOL:0000641, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C7:0 concentration" RELATED [] synonym: "milk fatty acid C7:0 percentage" RELATED [] xref: ATOL:0000641 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010310 name: milk fatty acid C8:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with an eight-carbon backbone." [ATOL:0000642, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk caprylic acid concentration" EXACT [] synonym: "milk caprylic acid content" RELATED [] synonym: "milk caprylic acid percentage" RELATED [] synonym: "milk fatty acid C8:0 concentration" RELATED [] synonym: "milk fatty acid C8:0 percentage" RELATED [] xref: ATOL:0000642 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010311 name: milk fatty acid C9:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a nine-carbon backbone." [ATOL:0000643, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C9:0 concentration" RELATED [] synonym: "milk fatty acid C9:0 percentage" RELATED [] xref: ATOL:0000643 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010312 name: milk fatty acid C10:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a ten-carbon backbone." [ATOL:0000644, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk capric acid concentration" EXACT [] synonym: "milk capric acid content" RELATED [] synonym: "milk capric acid percentage" RELATED [] synonym: "milk fatty acid C10:0 concentration" RELATED [] synonym: "milk fatty acid C10:0 percentage" RELATED [] xref: ATOL:0000644 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010313 name: milk fatty acid C11:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with an eleven-carbon backbone." [ATOL:0000645, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C11:0 concentration" RELATED [] synonym: "milk fatty acid C11:0 percentage" RELATED [] xref: ATOL:0000645 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010314 name: milk fatty acid C12:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a twelve-carbon backbone." [ATOL:0000646, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C12:0 concentration" RELATED [] synonym: "milk fatty acid C12:0 percentage" RELATED [] synonym: "milk lauric acid concentration" EXACT [] synonym: "milk lauric acid content" RELATED [] synonym: "milk lauric acid percentage" RELATED [] xref: ATOL:0000646 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T09:22:09Z [Term] id: VT:0010315 name: milk fatty acid C14:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a fourteen-carbon backbone." [ATOL:0000647, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C14:0 concentration" RELATED [] synonym: "milk fatty acid C14:0 percentage" RELATED [] synonym: "milk myristic acid concentration" EXACT [] synonym: "milk myristic acid content" RELATED [] synonym: "milk myristic acid percentage" RELATED [] xref: ATOL:0000647 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:13:36Z [Term] id: VT:0010316 name: milk fatty acid C16:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a sixteen-carbon backbone." [ATOL:0000648, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C16:0 concentration" RELATED [] synonym: "milk fatty acid C16:0 percentage" RELATED [] synonym: "milk palmitic acid concentration" EXACT [] synonym: "milk palmitic acid content" RELATED [] synonym: "milk palmitic acid percentage" RELATED [] xref: ATOL:0000648 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: VT:0010317 name: milk fatty acid C17:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a seventeen-carbon backbone." [ATOL:0000649, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C17:0 concentration" RELATED [] synonym: "milk fatty acid C17:0 percentage" RELATED [] synonym: "milk margaric acid concentration" EXACT [] synonym: "milk margaric acid content" RELATED [] synonym: "milk margaric acid percentage" RELATED [] xref: ATOL:0000649 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: VT:0010318 name: milk fatty acid C18:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with an eighteen-carbon backbone." [ATOL:0000650, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C18:0 concentration" RELATED [] synonym: "milk fatty acid C18:0 percentage" RELATED [] synonym: "milk stearic acid concentration" EXACT [] synonym: "milk stearic acid content" RELATED [] synonym: "milk stearic acid percentage" RELATED [] xref: ATOL:0000650 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: VT:0010319 name: milk fatty acid C20:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a twenty-carbon backbone." [ATOL:0000651, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk arachidic acid amount" EXACT [] synonym: "milk fatty acid C20:0 concentration" RELATED [] synonym: "milk fatty acid C20:0 percentage" RELATED [] xref: ATOL:0000651 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: VT:0010320 name: milk fatty acid C22:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of a saturated fatty acid with a twenty-two-carbon backbone." [ATOL:0000652, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C22:0 concentration" RELATED [] synonym: "milk fatty acid C22:0 percentage" RELATED [] xref: ATOL:0000652 is_a: VT:0010304 ! milk saturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:15:41Z [Term] id: VT:0010321 name: milk trans fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of unsaturated fatty acids containing at least one double bond in the trans configuration." [MeSH:D044242 "trans fatty acids", VTO:INRA "INRA curator"] synonym: "milk trans fatty acid concentration" RELATED [] synonym: "milk trans fatty acid percentage" RELATED [] is_a: VT:0010305 ! milk unsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: VT:0010322 name: milk omega-3 fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of unsaturated fatty acids in which the first unsaturated bond is in the third position from the omega carbon (C18:3, n-3; C20:5, n-3; C22:6, n-3)." [MeSH:D015525 "fatty acids, omega-3", VTO:INRA "INRA curator"] synonym: "milk omega-3 fatty acid concentration" RELATED [] synonym: "milk omega-3 fatty acid percentage" RELATED [] xref: ATOL:0000654 is_a: VT:0010305 ! milk unsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: VT:0010323 name: milk omega-6 fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of unsaturated fatty acids in which the first unsaturated bond is in the sixth position from the omega carbon (C18:2, n-6; C18:3, n-6; C20:2, n-6; C20:3, n-6; C20:4, n-6; C22:2, n-6; C22:4, n-6; C22:5, n-6)." [MeSH:D043371 "fatty acids, omega-6", VTO:INRA "INRA curator"] synonym: "milk omega-6 fatty acid concentration" RELATED [] synonym: "milk omega-6 fatty acid percentage" RELATED [] xref: ATOL:0000655 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: VT:0010324 name: milk conjugated linoleic acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of any/all isomers of linoleic acid in which the double bonds are conjugated (double bonds alternate with single bonds); found especially in meat and dairy products derived from ruminants." [MeSH:D044243 "linoleic acids, conjugated", VTO:INRA "INRA curator"] synonym: "milk CLA concentration" EXACT [] synonym: "milk CLA content" RELATED [] synonym: "milk CLA percentage" RELATED [] synonym: "milk conjugated linoleic acid concentration" RELATED [] synonym: "milk conjugated linoleic acid percentage" RELATED [] is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T10:40:54Z [Term] id: VT:0010325 name: milk fatty acid cis-9,cis-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated, omega-6 fatty acid with an eighteen-carbon backbone." [ATOL:0000657, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C18:2(n-6) concentration" EXACT [] synonym: "milk fatty acid C18:2(n-6) content" RELATED [] synonym: "milk fatty acid C18:2(n-6) percentage" RELATED [] synonym: "milk fatty acid cis-9,cis-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,cis-12-C18:2 percentage" RELATED [] synonym: "milk linoleic acid concentration" EXACT [] synonym: "milk linoleic acid content" RELATED [] synonym: "milk linoleic acid percentage" RELATED [] xref: ATOL:0000657 is_a: VT:0010323 ! milk omega-6 fatty acid amount created_by: caripark creation_date: 2010-05-24T11:11:14Z [Term] id: VT:0010326 name: milk fatty acid cis-9-C14:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with a fourteen-carbon backbone and a cis double bond at C-9." [ATOL:0000658, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9-C14:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C14:1 percentage" RELATED [] synonym: "milk myristoleic acid concentration" EXACT [] synonym: "milk myristoleic acid content" RELATED [] synonym: "milk myristoleic acid percentage" RELATED [] xref: ATOL:0000658 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T11:19:21Z [Term] id: VT:0010327 name: milk fatty acid cis-11-C16:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with a sixteen-carbon backbone and a cis double bond at C-11." [ATOL:0000659, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-11-C16:1 concentration" RELATED [] synonym: "milk fatty acid cis-11-C16:1 percentage" RELATED [] xref: ATOL:0000659 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010328 name: milk fatty acid cis-9-C17:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with a seventeen-carbon backbone and a cis double bond at C-9." [ATOL:0000660, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9-C17:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C17:1 percentage" RELATED [] xref: ATOL:0000660 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010329 name: milk fatty acid trans-11-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-11." [ATOL:0000661, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-11-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-11-C18:1 percentage" RELATED [] synonym: "milk vaccenic acid concentration" EXACT [] synonym: "milk vaccenic acid content" RELATED [] synonym: "milk vaccenic acid percentage" RELATED [] xref: ATOL:0000661 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010330 name: milk fatty acid trans-4-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-4." [ATOL:0000662, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-4-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-4-C18:1 percentage" RELATED [] xref: ATOL:0000662 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010331 name: milk fatty acid trans-5-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-5." [ATOL:0000663, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-5-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-5-C18:1 percentage" RELATED [] xref: ATOL:0000663 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010332 name: milk fatty acid trans-6-8-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at either C-6 or C-8." [ATOL:0000664, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-6-8-C18:1 concebtration" RELATED [] synonym: "milk fatty acid trans-6-8-C18:1 percentage" RELATED [] xref: ATOL:0000664 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010333 name: milk fatty acid trans-9-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-9." [ATOL:0000665, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-9-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-9-C18:1 percentage" RELATED [] xref: ATOL:0000685 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010334 name: milk fatty acid trans-10-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-10." [ATOL:0000666, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-10-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-10-C18:1 percentage" RELATED [] xref: ATOL:0000666 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010335 name: milk fatty acid trans-13-14-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at either C-13 or C-14." [ATOL:0000667, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-13-14-C18:1 concentration" RELATED [] synonym: "milk fatty acid trans-13-14-C18:1 percentage" RELATED [] synonym: "milk fatty acid trans-13/14-C18:1 concentration" EXACT [] synonym: "milk fatty acid trans-13/14-C18:1 content" RELATED [] synonym: "milk fatty acid trans-13/14-C18:1 percentage" RELATED [] xref: ATOL:0000667 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T12:39:39Z [Term] id: VT:0010336 name: milk fatty acid cis-14/trans-16-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and either a cis double bond at C-14 or a trans double bond at C-16." [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-14/trans-16-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-14/trans-16-C18:1 percentage" RELATED [] is_obsolete: true created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: VT:0010337 name: milk fatty acid cis-11-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-11." [ATOL:0000668, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-11-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-11-C18:1 percentage" RELATED [] xref: ATOL:0000668 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: VT:0010338 name: milk fatty acid cis-12-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-12." [ATOL:0000669, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-12-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-12-C18:1 percentage" RELATED [] xref: ATOL:0000669 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: VT:0010339 name: milk fatty acid cis-13-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-13." [ATOL:0000670, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-13-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-13-C18:1 percentage" RELATED [] xref: ATOL:0000670 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: VT:0010340 name: milk fatty acid cis-15-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-15." [ATOL:0000671, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-15-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-15-C18:1 percentage" RELATED [] xref: ATOL:0000671 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:28:26Z [Term] id: VT:0010341 name: milk fatty acid cis-9,trans-13-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-9, and a trans double bond at C-13." [ATOL:0000672, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9,trans-13-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,trans-13-C18:2 percentage" RELATED [] xref: ATOL:0000672 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: VT:0010342 name: milk fatty acid cis-9,trans-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-9, and a trans double bond at C-12." [ATOL:0000673, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9,trans-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,trans-12-C18:2 percentage" RELATED [] xref: ATOL:0000673 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: VT:0010343 name: milk fatty acid trans-9,cis-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-12, and a trans double bond at C-9." [ATOL:0000674, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-9,cis-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,cis-12-C18:2 percentage" RELATED [] xref: ATOL:0000674 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: VT:0010344 name: milk fatty acid trans-9,trans-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-9 and C-12." [ATOL:0000675, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-9,trans-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,trans-12-C18:2 percentage" RELATED [] xref: ATOL:0000675 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: VT:0010345 name: milk fatty acid trans-9,trans-14-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-9 and C-14." [ATOL:0000676, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-9,trans-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,trans-14-C18:2 percentage" RELATED [] xref: ATOL:0000676 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: VT:0010346 name: milk fatty acid trans-11,cis-15-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-11, and a cis double bond at C-15." [ATOL:0000677, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-11,cis-15-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,cis-15-C18:2 percentage" RELATED [] xref: ATOL:0000677 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: VT:0010347 name: milk fatty acid trans-11,trans-15-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-11 and C-15." [ATOL:0000678, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-11,trans-15-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,trans-15-C18:2 percentage" RELATED [] xref: ATOL:0000678 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T01:44:34Z [Term] id: VT:0010348 name: milk fatty acid cis-9,cis-11-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and cis double bonds at C-9 and C-11." [ATOL:0000679, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9,cis-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,cis-11-C18:2 percentage" RELATED [] xref: ATOL:0000679 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: VT:0010349 name: milk fatty acid cis-9,trans-11-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-9, and a trans double bond at C-11." [ATOL:0000680, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9,trans-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-9,trans-11-C18:2 percentage" RELATED [] synonym: "milk rumenic acid concentration" EXACT [] synonym: "milk rumenic acid content" RELATED [] synonym: "milk rumenic acid percentage" RELATED [] xref: ATOL:0000680 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: VT:0010350 name: milk fatty acid cis-12,trans-14-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a cis double bond at C-12, and a trans double bond at C-14." [ATOL:0000681, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-12,trans-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid cis-12,trans-14-C18:2 percentage" RELATED [] xref: ATOL:0000681 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: VT:0010351 name: milk fatty acid trans-7,cis-9-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-7, and a cis double bond at C-9." [ATOL:0000682, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-7,cis-9-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-7,cis-9-C18:2 percentage" RELATED [] xref: ATOL:0000682 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: VT:0010352 name: milk fatty acid trans-8,cis-10-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-8, and a cis double bond at C-10." [ATOL:0000683, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-8,cis-10-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-8,cis-10-C18:2 percentage" RELATED [] xref: ATOL:0000683 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: VT:0010353 name: milk fatty acid trans-9,cis-11-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-9, and a cis double bond at C-11." [ATOL:0000684, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-9,cis-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,cis-11-C18:2 percentage" RELATED [] xref: ATOL:0000684 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: VT:0010354 name: milk fatty acid trans-10,cis-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-10, and a cis double bond at C-12." [ATOL:0000685, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-10,cis-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-10,cis-12-C18:2 percentage" RELATED [] xref: ATOL:0000685 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:18:24Z [Term] id: VT:0010355 name: milk fatty acid trans-11,cis-13-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-11, and a cis double bond at C-13." [ATOL:0000686, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-11,cis-13-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,cis-13-C18:2 percentage" RELATED [] xref: ATOL:0000686 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010356 name: milk fatty acid trans-12,cis-14-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone, a trans double bond at C-12, and a cis double bond at C-14." [ATOL:0000687, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-12,cis-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-12,cis-14-C18:2 percentage" RELATED [] xref: ATOL:0000687 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010357 name: milk fatty acid trans-7,trans-9-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-7 and C-9." [ATOL:0000688, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-7,trans-9-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-7,trans-9-C18:2 percentage" RELATED [] xref: ATOL:0000688 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010358 name: milk fatty acid trans-8,trans-10-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-8 and C-10." [ATOL:0000689, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-8,trans-10-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-8,trans-10-C18:2 percentage" RELATED [] xref: ATOL:0000689 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010359 name: milk fatty acid trans-9,trans-11-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-9 and C-11." [ATOL:0000690, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-9,trans-11-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-9,trans-11-C18:2 percentage" RELATED [] xref: ATOL:0000690 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010360 name: milk fatty acid trans-10,trans-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-10 and C-12." [ATOL:0000691, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-10,trans-12-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-10,trans-12-C18:2 percentage" RELATED [] xref: ATOL:0000691 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010361 name: milk fatty acid trans-11,trans-13-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-11 and C-13." [ATOL:0000692, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-11,trans-13-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-11,trans-13-C18:2 percentage" RELATED [] xref: ATOL:0000692 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010362 name: milk fatty acid trans-12,trans-14-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and trans double bonds at C-12 and C-14." [ATOL:0000693, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid trans-12,trans-14-C18:2 concentration" RELATED [] synonym: "milk fatty acid trans-12,trans-14-C18:2 percentage" RELATED [] xref: ATOL:0000693 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T02:47:15Z [Term] id: VT:0010363 name: milk fatty acid cis-8-C20:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with a twenty-carbon backbone and cis double bond at C-8." [ATOL:0000694, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-8-C20:1 concentration" RELATED [] synonym: "milk fatty acid cis-8-C20:1 percentage" RELATED [] xref: ATOL:0000694 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: VT:0010364 name: milk fatty acid cis-11-C20:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with a twenty-carbon backbone and cis double bond at C-11." [ATOL:0000695, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-11-C20:1 concentration" RELATED [] synonym: "milk fatty acid cis-11-C20:1 percentage" RELATED [] xref: ATOL:0000695 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: VT:0010365 name: milk fatty acid C20:4(n-6) amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated, omega-6 fatty acid with a twenty-carbon backbone and four double bonds." [ATOL:0000696, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C20:4 n-6 concentration" EXACT [] synonym: "milk fatty acid C20:4 n-6 content" RELATED [] synonym: "milk fatty acid C20:4 n-6 percentage" RELATED [] synonym: "milk fatty acid C20:4(n-6) concentration" RELATED [] synonym: "milk fatty acid C20:4(n-6) percentage" RELATED [] xref: ATOL:0000696 is_a: VT:0010323 ! milk omega-6 fatty acid amount created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: VT:0010366 name: milk fatty acid C20:5(n-3) amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated, omega-3 fatty acid with a twenty-carbon backbone and five double bonds." [ATOL:0000697, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C20:5 n-3 concentration" EXACT [] synonym: "milk fatty acid C20:5 n-3 content" RELATED [] synonym: "milk fatty acid C20:5 n-3 percentage" RELATED [] synonym: "milk fatty acid C20:5(n-3) concentration" RELATED [] synonym: "milk fatty acid C20:5(n-3) percentage" RELATED [] xref: ATOL:0000697 is_a: VT:0010322 ! milk omega-3 fatty acid amount is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:28:22Z [Term] id: VT:0010367 name: milk fatty acid C22:5(n-3) amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated, omega-3 fatty acid with a twenty-two-carbon backbone and five double bonds." [ATOL:0000701, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C22:5 n-3 concentration" EXACT [] synonym: "milk fatty acid C22:5 n-3 content" RELATED [] synonym: "milk fatty acid C22:5 n-3 percentage" RELATED [] synonym: "milk fatty acid C22:5(n-3) concentration" RELATED [] synonym: "milk fatty acid C22:5(n-3) percentage" RELATED [] xref: ATOL:0000701 is_a: VT:0010322 ! milk omega-3 fatty acid amount is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:43:23Z [Term] id: VT:0010368 name: milk fatty acid C22:6(n-3) amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated, omega-3 fatty acid with a twenty-two-carbon backbone and six double bonds." [ATOL:0000698, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C22:6 n-3 concentration" EXACT [] synonym: "milk fatty acid C22:6 n-3 content" RELATED [] synonym: "milk fatty acid C22:6 n-3 percentage" RELATED [] synonym: "milk fatty acid C22:6(n-3) concentration" RELATED [] synonym: "milk fatty acid C22:6(n-3) percentage" RELATED [] xref: ATOL:0000698 is_a: VT:0010322 ! milk omega-3 fatty acid amount is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:43:23Z [Term] id: VT:0010369 name: milk fatty acid C18:3(n-3) amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated, omega-3 fatty acid with an eighteen-carbon backbone and three double bonds." [ATOL:0000699, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C18:3 n-3 concentration" EXACT [] synonym: "milk fatty acid C18:3 n-3 content" RELATED [] synonym: "milk fatty acid C18:3 n-3 percentage" RELATED [] synonym: "milk fatty acid C18:3(n-3) concentration" RELATED [] synonym: "milk fatty acid C18:3(n-3) percentage" RELATED [] synonym: "milk linolenic acid concentration" EXACT [] synonym: "milk linolenic acid content" RELATED [] synonym: "milk linolenic acid percentage" RELATED [] xref: ATOL:0000699 is_a: VT:0010322 ! milk omega-3 fatty acid amount is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:43:23Z [Term] id: VT:0010370 name: milk fatty acid C20:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with a twenty-carbon backbone and two double bonds." [ATOL:0000700, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid C20:2 concentration" RELATED [] synonym: "milk fatty acid C20:2 percentage" RELATED [] xref: ATOL:0000700 is_a: VT:0010374 ! milk polyunsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:51:22Z [Term] id: VT:0010371 name: milk fatty acid cis-9-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-9." [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9-C18:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C18:1 percentage" RELATED [] synonym: "milk oleic acid concentration" EXACT [] synonym: "milk oleic acid content" RELATED [] synonym: "milk oleic acid percentage" RELATED [] is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:54:00Z [Term] id: VT:0010372 name: milk fatty acid cis-9-C16:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with a sixteen-carbon backbone and a cis double bond at C-9." [ATOL:0000702, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fatty acid cis-9-C16:1 concentration" RELATED [] synonym: "milk fatty acid cis-9-C16:1 percentage" RELATED [] synonym: "milk palmitoleic acid concentration" EXACT [] synonym: "milk palmitoleic acid content" RELATED [] synonym: "milk palmitoleic acid percentage" RELATED [] xref: ATOL:0000702 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:54:00Z [Term] id: VT:0010373 name: milk monounsaturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons present in milk fat; the carbon chain has only one double or triple carbon-carbon bond." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0010305 ! milk unsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:59:27Z [Term] id: VT:0010374 name: milk polyunsaturated fatty acid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of organic, monobasic acids derived from hydrocarbons present in milk fat; the carbon chain has two or more double or triple carbon-carbon bonds." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0010305 ! milk unsaturated fatty acid amount created_by: caripark creation_date: 2010-05-24T03:59:27Z [Term] id: VT:0010375 name: ovary diameter namespace: Trait.ontology def: "The distance across the female reproductive gland containing the germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0000963 is_a: VT:0001127 ! ovary size trait created_by: caripark creation_date: 2012-07-18T11:16:33Z [Term] id: VT:0010376 name: milk soluble calcium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of calcium not linked to casein micelles; may be in an associated form (with citrate, inorganic phosphate, or chloride) or a free/ionic form." [ATOL:0000706, VTO:INRA "INRA curator"] synonym: "milk soluble calcium concentration" RELATED [] synonym: "milk soluble calcium content" EXACT [] xref: ATOL:0000706 is_a: VT:0010290 ! milk calcium amount created_by: caripark creation_date: 2010-05-26T10:52:07Z [Term] id: VT:0010377 name: milk free calcium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of unlinked/unassociated calcium in ionic form." [ATOL:0000707, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk free calcium concentration" RELATED [] synonym: "milk free calcium content" EXACT [] synonym: "milk ionic calcium concentration" EXACT [] synonym: "milk ionic calcium content" RELATED [] xref: ATOL:0000707 is_a: VT:0010376 ! milk soluble calcium amount created_by: caripark creation_date: 2010-05-26T10:52:07Z [Term] id: VT:0010378 name: milk colloidal calcium amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of the calcium linked to casein micelles." [ATOL:0000708, VTO:INRA "INRA curator"] synonym: "milk colloidal calcium concentration" RELATED [] synonym: "milk colloidal calcium content" EXACT [] xref: ATOL:0000708 is_a: VT:0010290 ! milk calcium amount created_by: caripark creation_date: 2010-05-26T10:52:07Z [Term] id: VT:0010379 name: milk epithelial cell quantity namespace: Trait.ontology def: "The proportion or number of cells originating from the mammary epithelium present in milk." [ATOL:0000268, VTO:INRA "INRA curator"] synonym: "milk epithelial cell count" RELATED [] xref: ATOL:0000268 is_a: VT:1000072 ! milk somatic cell quantity created_by: caripark creation_date: 2010-05-26T12:26:48Z [Term] id: VT:0010380 name: milk beta-carotene amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of a carotenoid that is the most common precursor to vitamin A." [ATOL:0000709, ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "milk beta carotene concentration" RELATED [] synonym: "milk beta-carotene concentration" RELATED [] synonym: "milk beta-carotene content" EXACT [] xref: ATOL:0000709 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-26T01:12:38Z [Term] id: VT:0010381 name: milk retinol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of one of the active forms of vitamin A." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "milk retinol concentration" RELATED [] synonym: "milk retinol content" EXACT [] xref: ATOL:0000710 is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-26T01:15:42Z [Term] id: VT:0010382 name: milk triglyceride amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this molecule, glycerol esterified at each of its three hydroxyl groups by a fatty acid." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "milk triacylglycerol concentration" RELATED [] synonym: "milk triacylglycerol content" RELATED [] synonym: "milk triglyceride concentration" RELATED [] synonym: "milk triglyceride content" EXACT [] is_a: VT:0000187 ! triglyceride amount is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-26T01:25:32Z [Term] id: VT:0010383 name: milk cholesterol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of these precursors to steroid hormones and bile salts; also components of plasma membranes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "milk cholesterol concentration" RELATED [] synonym: "milk cholesterol content" EXACT [] xref: ATOL:0000712 is_a: VT:0003947 ! cholesterol amount is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-26T01:28:32Z [Term] id: VT:0010384 name: oviduct length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the tube through which the ova pass from the ovary to the uterus (mammals) or to the outside (fish, birds)." [ATOL:0000964, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "fallopian tube length" EXACT [] synonym: "uterine tube length" EXACT [] xref: ATOL:0000964 is_a: VT:0003576 ! oviduct size trait created_by: caripark creation_date: 2012-07-18T11:18:00Z [Term] id: VT:0010385 name: milk diacylglycerol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of glycerol with two esterified acyl moieties." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "milk diacylglycerol concentration" RELATED [] synonym: "milk diacylglycerol content" EXACT [] xref: ATOL:0000714 is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: VT:0010386 name: milk monoacylglycerol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of glycerol with an acyl moiety esterified to position 1 or 2; an intermediate in the degradation and synthesis of lipids." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "milk monoacylglycerol concentration" RELATED [] synonym: "milk monoacylglycerol content" EXACT [] xref: ATOL:0000715 is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: VT:0010387 name: milk phospholipid amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of the fat derivatives in which one fatty acid has been replaced by a phosphate group." [ATOL:0000716, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk phospholipid concentration" RELATED [] synonym: "milk phospholipid content" EXACT [] xref: ATOL:0000716 is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: VT:0010388 name: milk polyphenol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of compounds containing more than one phenol group." [ATOL:0000717, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk polyphenol concentration" RELATED [] synonym: "milk polyphenol content" EXACT [] xref: ATOL:0000717 is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2010-05-26T01:49:37Z [Term] id: VT:0010389 name: milk butyrophilin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of one of the three predominant proteins in the milk fat globule membrane." [ATOL:0000718, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk BTN concentration" EXACT [] synonym: "milk BTN content" RELATED [] synonym: "milk butyrophilin concentration" RELATED [] synonym: "milk butyrophilin content" EXACT [] xref: ATOL:0000718 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T02:42:38Z [Term] id: VT:0010390 name: milk xanthine oxidoreductase amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of one of the three predominant proteins in the milk fat globule membrane." [ATOL:0000719, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk xanthine oxidoreductase concentration" RELATED [] synonym: "milk xanthine oxidoreductase content" EXACT [] synonym: "milk XOR concentration" EXACT [] synonym: "milk XOR content" RELATED [] xref: ATOL:0000719 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T02:42:38Z [Term] id: VT:0010391 name: milk adipophilin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of one of the three predominant proteins in the milk fat globule membrane." [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk adipophilin concentration" RELATED [] synonym: "milk adipophilin content" EXACT [] synonym: "milk ADPH concentration" EXACT [] synonym: "milk ADPH content" RELATED [] xref: ATOL:0000720 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T02:42:38Z [Term] id: VT:0010392 name: milk mucin 1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of a cell-surface associated mucin protein." [ATOL:0000721, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk MUC1 concentration" EXACT [] synonym: "milk MUC1 content" RELATED [] synonym: "milk mucin 1 concentration" RELATED [] synonym: "milk mucin 1 content" EXACT [] xref: ATOL:0000721 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T02:55:09Z [Term] id: VT:0010393 name: milk CD36 molecule amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this integral membrane protein." [VTO:INRA "INRA curator"] synonym: "milk CD36 molecule concentration" RELATED [] synonym: "milk CD36 molecule content" EXACT [] synonym: "milk cluster of differentiation concentration" EXACT [] synonym: "milk cluster of differentiation content" RELATED [] synonym: "milk thrombospondin receptor concentration" EXACT [] synonym: "milk thrombospondin receptor content" RELATED [] is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T03:16:10Z [Term] id: VT:0010394 name: uterine horn morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the upper right or left portion of the uterus to which the uterine tube is connected." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0000966 is_a: VT:0001120 ! uterus morphology trait created_by: caripark creation_date: 2012-07-18T11:47:08Z [Term] id: VT:0010395 name: endometrium thickness namespace: Trait.ontology def: "The distance between the surfaces of the glandular epithelium of the uterus." [ATOL:0000967, VTO:INRA "INRA curator"] xref: ATOL:0000967 is_a: VT:0001120 ! uterus morphology trait created_by: caripark creation_date: 2012-07-18T11:49:40Z [Term] id: VT:0010396 name: milk stomatin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this integral membrane protein." [ATOL:0000725, VTO:INRA "INRA curator"] synonym: "milk stomatin concentration" RELATED [] synonym: "milk stomatin content" EXACT [] xref: ATOL:0000725 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T03:24:19Z [Term] id: VT:0010397 name: milk fat globule-EGF factor 8 protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of this integrin-binding protein found in milk fat globules." [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "milk fat globule-EGF factor 8 protein concentration" RELATED [] synonym: "milk fat globule-EGF factor 8 protein content" EXACT [] synonym: "milk lactadherin concentration" EXACT [] synonym: "milk lactadherin content" RELATED [] is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T03:31:59Z [Term] id: VT:0010398 name: milk plasmin amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of a fibrinolytic enzyme derived from the precursor plasminogen." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "milk plasmin concentration" RELATED [] synonym: "milk plasmin content" EXACT [] xref: ATOL:0000726 is_a: VT:1000165 ! milk protein amount created_by: caripark creation_date: 2010-05-26T03:55:58Z [Term] id: VT:0010399 name: milk urea amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of the chief end product of nitrogen metabolism in mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "milk urea concentration" RELATED [] synonym: "milk urea content" EXACT [] xref: ATOL:0000727 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-26T03:59:27Z [Term] id: VT:0010400 name: milk ammonia amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of an alkaline gas formed by decomposition of nitrogen-containing substances such as proteins and amino acids." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", VTO:INRA "INRA curator"] synonym: "milk ammonia concentration" RELATED [] xref: ATOL:0000728 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2010-05-26T03:59:27Z [Term] id: VT:0010401 name: ovarian follicle size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of a fluid-filled ovarian structure containing an oocyte." [ISBN:90-801886-5-4 "Compendium of Animal Reproduction", VTO:INRA "INRA curator"] xref: ATOL:0000970 is_a: VT:0001131 ! ovarian follicle morphology trait created_by: caripark creation_date: 2012-07-18T12:09:06Z [Term] id: VT:0010402 name: corpus luteum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the yellow endocrine body formed in the ovary after follicle rupture." [ATOL:0000971, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0000971 is_a: VT:0002679 ! corpus luteum morphology trait created_by: caripark creation_date: 2012-07-18T12:19:24Z [Term] id: VT:0010403 name: cervical opening shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the external os cervix." [ATOL:0000961, VTO:INRA "INRA curator"] xref: ATOL:0000961 is_a: VT:0001135 ! cervix morphology trait created_by: caripark creation_date: 2012-07-18T03:48:16Z [Term] id: VT:0010404 name: cervical fold quantity namespace: Trait.ontology def: "The proportion or number of ridges in the lining of the cervical canal." [ATOL:0000962, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0000962 is_a: VT:0001135 ! cervix morphology trait created_by: caripark creation_date: 2012-07-18T03:51:19Z [Term] id: VT:0010405 name: sperm size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the male gamete." [ATOL:0001009, VTO:INRA "INRA curator"] xref: ATOL:0001009 is_a: VT:0010042 ! sperm morphology trait created_by: caripark creation_date: 2012-07-19T08:50:38Z [Term] id: VT:0010406 name: sperm flagellum size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the whiplike locomotory organelle of the spermatozoa." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0001010 is_a: VT:0010405 ! sperm size trait created_by: caripark creation_date: 2012-07-19T10:35:11Z [Term] id: VT:0010407 name: sperm head size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitde of the portion of the spermatozoa containing the nucleus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0001011 is_a: VT:0010405 ! sperm size trait created_by: caripark creation_date: 2012-07-19T10:38:24Z [Term] id: VT:0010408 name: bulbourethral gland physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the gland in males that lies along the prostate gland and secretes a fluid component of the seminal fluid into the urethra." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0001019 is_a: VT:0003698 ! male reproductive system physiology trait created_by: caripark creation_date: 2012-07-19T11:03:20Z [Term] id: VT:0010409 name: placenta physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0010038] is_a: VT:0004264 ! extraembryonic tissue physiology trait created_by: caripark creation_date: 2012-07-19T11:21:53Z [Term] id: VT:0010410 name: gonadotropin-releasing hormone secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of the peptide hormone secreted by the hypothalamus that stimulates release of follicle-stimulating hormone and leuteinizing hormone from the anterior pituitary." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "GnRH secretion trait" EXACT [] is_a: VT:0001752 ! secretion by hypothalamus trait created_by: caripark creation_date: 2012-07-19T12:34:23Z [Term] id: VT:0010411 name: secretion by placenta trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of physiologically active substances from the organ of metabolic interchange between the fetus and mother." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "placental secretion trait" EXACT [] is_a: VT:0010409 ! placenta physiology trait created_by: caripark creation_date: 2012-07-19T01:10:12Z [Term] id: VT:0010412 name: chorionic gonadotropin secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of this glycoprotein produced by trophoblastic cells originating from the placenta." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] is_a: VT:0010411 ! secretion by placenta trait created_by: caripark creation_date: 2012-07-19T01:13:21Z [Term] id: VT:0010413 name: luteinizing hormone secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a glycoprotein that, in females, stimulates the Graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in males, it stimulates the epithelium of the seminiferous tubules and is partly responsible for spermatogenesis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "LH secretion trait" EXACT [] xref: ATOL:0001701 is_a: VT:0001746 ! secretion by pituitary trait created_by: caripark creation_date: 2012-07-19T01:26:02Z [Term] id: VT:0010414 name: follicle-stimulating hormone secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of a glycoprotein that stimulates the graafian follicles of the ovary and assists in follicular maturation and the secretion of estradiol; in the male, it stimulates the epithelium of the seminiferous tubules and is partially responsible for inducing spermatogenesis." [ATOL:0001697, ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "follitropin secretion trait" EXACT [] synonym: "FSH secretion trait" EXACT [] xref: ATOL:0001697 is_a: VT:0001746 ! secretion by pituitary trait created_by: caripark creation_date: 2012-07-19T01:32:56Z [Term] id: VT:0010415 name: prolactin secretion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the controlled release of the peptide hormone which normally stimulates milk production by the mammary gland." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] synonym: "PRL secretion trait" EXACT [] xref: ATOL:0000496 is_a: VT:0001746 ! secretion by pituitary trait created_by: caripark creation_date: 2012-07-19T01:40:03Z [Term] id: VT:0010416 name: seminal gland physiology namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the glandular structure that is a diverticulum of the ductus deferens; its secretion is one of the components of semen." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:INRA "INRA curator"] xref: ATOL:0001018 is_a: VT:0003698 ! male reproductive system physiology trait created_by: caripark creation_date: 2012-07-19T02:24:24Z [Term] id: VT:0010417 name: leukocyte proliferation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which any of the white blood cells (basophils, eosinophils, neutrophils, lymphocytes, dendritic cells, macrophages, mast cells, or monocytes) undergo expansion by cell division." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002442 ! leukocyte physiology trait created_by: caripark creation_date: 2012-09-10T03:02:47Z [Term] id: VT:0010418 name: CD8-positive, CD-25 positive, alpha-beta regulatory T cell morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of a CD8-positive, alpha-beta-positive, FoxP3-positive T cell with suppressor function." [CL:0000919] is_a: VT:0008398 ! CD8-positive, alpha-beta regulatory T cell morphology trait created_by: caripark creation_date: 2012-10-02T01:11:11Z [Term] id: VT:0010419 name: CD8-positive, CD-25 positive, alpha-beta regulatory T cell quantity namespace: Trait.ontology def: "The proportion or number of the subset of CD8-positive, alpha-beta-positive, FoxP3-positive T cells with suppressor function." [CL:0000919] is_a: VT:0010418 ! CD8-positive, CD-25 positive, alpha-beta regulatory T cell morphology trait created_by: caripark creation_date: 2012-10-02T01:12:17Z [Term] id: VT:0010420 name: adrenal gland mass namespace: Trait.ontology def: "The amount of matter in the endocrine gland(s) located above the kidney responsible for hormone and epinephrine secretion." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000639 ! adrenal gland morphology trait created_by: caripark creation_date: 2012-10-02T02:56:05Z [Term] id: VT:0010421 name: epididymal fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the elongated structure connected to the posterior surface of the testes that transports, stores, and matures spermatozoa between testes and vas deferens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0006319] is_a: VT:0015000 ! epididymal fat pad morphology trait created_by: caripark creation_date: 2012-10-10T10:30:44Z [Term] id: VT:0010422 name: femoral fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008905] is_a: VT:0015001 ! femoral fat pad morphology trait created_by: caripark creation_date: 2012-10-10T10:31:53Z [Term] id: VT:0010423 name: gonadal fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335] is_a: VT:0005335 ! gonadal fat pad morphology trait created_by: caripark creation_date: 2012-10-10T10:33:44Z [Term] id: VT:0010424 name: inguinal fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue found in the groin." [MP:0005336] is_a: VT:0005336 ! inguinal fat pad morphology trait created_by: caripark creation_date: 2012-10-10T10:34:48Z [Term] id: VT:0010425 name: interscapular fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue located between the large, flat bones of the shoulder girdle." [MP:0000149, MP:0006320] is_a: VT:0015002 ! interscapular fat pad morphology trait created_by: caripark creation_date: 2012-10-10T11:51:48Z [Term] id: VT:0010426 name: mammary fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the milk-secreting gland that lies within the breast." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008904] is_a: VT:0015003 ! mammary fat pad morphology trait created_by: caripark creation_date: 2012-10-10T11:55:19Z [Term] id: VT:0010427 name: mesenteric fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the peritoneal fold that encloses the small intestine and connects it to the abdominal wall." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MP:0008903] is_a: VT:0015004 ! mesenteric fat pad morphology trait created_by: caripark creation_date: 2012-10-10T11:57:27Z [Term] id: VT:0010428 name: parametrial fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008906] is_a: VT:0015005 ! parametrial fat pad morphology trait created_by: caripark creation_date: 2012-10-10T11:58:59Z [Term] id: VT:0010429 name: renal fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the kidney." [MP:0008902] is_a: VT:0015006 ! renal fat pad morphology trait created_by: caripark creation_date: 2012-10-10T11:59:52Z [Term] id: VT:0010430 name: retroperitoneal fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue found on the dorsal/posterior side of the serous membrane lining the abdominal cavity and covering most of the viscera." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0005337] is_a: VT:0005337 ! retroperitoneal fat pad morphology trait created_by: caripark creation_date: 2012-10-10T12:02:30Z [Term] id: VT:0010431 name: uterine fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue associated with the hollow muscular organ where the embryo/fetus develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008900] is_a: VT:0015007 ! uterine fat pad morphology trait created_by: caripark creation_date: 2012-10-10T12:03:40Z [Term] id: VT:0010432 name: milk fatty acid cis-14-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a cis double bond at C-14." [ATOL:0000262, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0000262 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2012-10-12T01:50:20Z [Term] id: VT:0010433 name: milk fatty acid trans-16-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk fat of an unsaturated fatty acid with an eighteen-carbon backbone and a trans double bond at C-16." [ATOL:0000263, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0000263 is_a: VT:0010373 ! milk monounsaturated fatty acid amount created_by: caripark creation_date: 2012-10-12T01:52:04Z [Term] id: VT:0010434 name: response to infection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the body's reaction to invasion and multiplication of microorganisms in its tissues, or the body's reaction to components of or toxins produced by pathogenic microorganisms." [MeSH:D007239 "infection"] is_a: VT:0010139 ! immune response trait created_by: caripark creation_date: 2012-10-16T02:57:33Z [Term] id: VT:0010435 name: response to bacterial infection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the body's reaction to invasion and multiplication of bacteria (unicellular, prokaryotic organisms characterized by peptidoglycan cell walls) in its tissues, or the body's reaction to components of or toxins produced by bacteria." [ISBN:0805375430 "Microbiology: An Introduction"] is_a: VT:0010434 ! response to infection trait created_by: caripark creation_date: 2012-10-16T03:00:20Z [Term] id: VT:0010436 name: response to fungal infection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the body's reaction to invasion and multiplication of yeast or mold in its tissues, or the body's reaction to components of or toxins produced by these organisms." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010434 ! response to infection trait created_by: caripark creation_date: 2012-10-16T03:00:20Z [Term] id: VT:0010437 name: response to parasitic infection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the body's reaction to invasion and multiplication of parasites (organisms that live in or on another and draw their nourishment therefrom) in its tissues, or the body's reaction to components of or toxins produced by parasites." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010434 ! response to infection trait created_by: caripark creation_date: 2012-10-16T03:00:20Z [Term] id: VT:0010438 name: response to prion infection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the body's reaction to invasion of its tissues by small, infectious proteinaceous particles of non-nucleic acid composition." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010434 ! response to infection trait created_by: caripark creation_date: 2012-10-16T03:00:20Z [Term] id: VT:0010439 name: response to viral infection trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the body's reaction to invasion and multiplication of a virus (pathogen consisting of nucelic acid inside a protein shell, which can grow/reproduce only after infecting a host cell) in its tissues, or the body's reaction to components of or toxins produced by a virus." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010434 ! response to infection trait created_by: caripark creation_date: 2012-10-16T03:00:20Z [Term] id: VT:0010440 name: bacteria quantity namespace: Trait.ontology def: "The proportion or number of unicellular, prokaryotic organisms characterized by peptidoglycan cell walls." [ISBN :0805375430 "Microbiology: An Introduction"] is_a: VT:0010435 ! response to bacterial infection trait created_by: caripark creation_date: 2012-10-16T03:00:26Z [Term] id: VT:0010441 name: parasite quantity namespace: Trait.ontology def: "The proportion or number of organisms that live on or in another and draw their nourishment therefrom." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010437 ! response to parasitic infection trait created_by: caripark creation_date: 2012-10-16T03:00:39Z [Term] id: VT:0010442 name: behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic of the actions or reactions of organisms" [MP:MammalianPhenotype] is_a: VT:0010454 ! organism trait created_by: smb creation_date: 2011-12-07T11:05:32Z [Term] id: VT:0010443 name: mammary gland secreted fluid morphology trait namespace: Trait.ontology is_a: VT:0000627 ! mammary gland morphology trait created_by: mshimoyama creation_date: 2011-06-22T04:12:42Z [Term] id: VT:0010448 name: forelimb muscle mass namespace: Trait.ontology def: "The amount of matter in the muscle tissue of the anterior/superior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "shoulder muscle mass trait" NARROW [] is_a: VT:0010106 ! limb muscle morphology trait is_a: VT:1000687 ! forelimb mass created_by: caripark creation_date: 2010-07-02T04:17:46Z [Term] id: VT:0010449 name: hindlimb muscle mass namespace: Trait.ontology def: "The amount of matter in the muscle tissue of the posterior/inferior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "drumstick muscle mass" NARROW [] synonym: "ham muscle mass " NARROW [] synonym: "thigh muscle mass" NARROW [] is_a: VT:0010107 ! hindlimb muscle morphology trait is_a: VT:1000689 ! hindlimb mass created_by: caripark creation_date: 2010-07-02T04:25:47Z [Term] id: VT:0010453 name: abdominal wall mass namespace: Trait.ontology def: "The amount of matter in the margins that enclose the abdominal cavity; the major part is muscular but also includes skin, subcutaneous fat, fascia and the parietal peritoneum." [MP:00003257] synonym: "belly weight" RELATED [] is_a: VT:0003257 ! abdominal wall morphology trait created_by: caripark creation_date: 2010-07-07T12:44:13Z [Term] id: VT:0010454 name: organism trait namespace: Trait.ontology is_a: VT:0000001 ! vertebrate trait created_by: caripark creation_date: 2011-03-17T01:43:14Z [Term] id: VT:0015000 name: epididymal fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the elongated structure connected to the posterior surface of the testes that transports, stores, and matures spermatozoa between testes and vas deferens." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0006319] synonym: "epididymal fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:25:25Z [Term] id: VT:0015001 name: femoral fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008905] synonym: "femoral fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:27:30Z [Term] id: VT:0015002 name: interscapular fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue located between the large, flat bones of the shoulder girdle." [MP:0000149, MP:0006320] synonym: "interscapular fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:30:53Z [Term] id: VT:0015003 name: mammary fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the milk-secreting gland that lies within the breast." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008904] synonym: "mammary fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:31:55Z [Term] id: VT:0015004 name: mesenteric fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the peritoneal fold that encloses the small intestine and connects it to the abdominal wall." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MP:0008903] synonym: "mesenteric fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:33:36Z [Term] id: VT:0015005 name: parametrial fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008906] synonym: "parametrial fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:34:42Z [Term] id: VT:0015006 name: renal fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the kidney." [MP:0008902] synonym: "perirenal fat pad morphology trait" EXACT [] synonym: "renal fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:35:50Z [Term] id: VT:0015007 name: uterine fat pad morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the encapsulated adipose tissue associated with the hollow muscular organ where the embryo/fetus develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008900] synonym: "periuterine fat pad morphology trait" EXACT [] synonym: "uterine fat depot morphology trait" EXACT [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:38:11Z [Term] id: VT:0015008 name: total fat pad mass namespace: Trait.ontology def: "The total amount of matter in all of the encapsulated adipose tissue in the body." [MP:0005334, MP:0008908] synonym: "total fat body weight" EXACT [] synonym: "total fat pad weight" RELATED [] is_a: VT:0005334 ! fat pad morphology trait created_by: smb creation_date: 2009-08-26T02:39:37Z [Term] id: VT:0015009 name: white adipocyte morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the fat cells with light coloration and few mitochondria; these contain a scant ring of cytoplasm surrounding a single large lipid droplet or vacuole." [MP:0009117] synonym: "white fat cell morphology trait" EXACT [] synonym: "white lipocyte morphology trait" EXACT [] is_a: VT:0002970 ! white adipose morphology trait is_a: VT:0004128 ! adipocyte morphology trait created_by: smb creation_date: 2009-08-26T02:45:29Z [Term] id: VT:0015010 name: white adipocyte lipid droplet size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the single large lipid droplet or vacuole of the fat cells with light coloration and few mitochondria." [MP:0009120] synonym: "white fat cell lipid droplet size trait" EXACT [] synonym: "white lipocyte lipid droplet size trait" EXACT [] is_a: VT:0015009 ! white adipocyte morphology trait created_by: smb creation_date: 2009-08-26T02:47:18Z [Term] id: VT:0015011 name: white adipocyte size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of fat cells with light coloration and few mitochondria." [MP:0009132] synonym: "white fat cell size trait" EXACT [] synonym: "white lipocyte size trait" EXACT [] is_a: VT:0015009 ! white adipocyte morphology trait created_by: smb creation_date: 2009-08-26T02:48:56Z [Term] id: VT:0015014 name: aggression-related behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to domineering, assaultive or forceful physical action" [MGI:MP, MGI:smb] is_a: VT:0002572 ! emotion/affect behavior trait created_by: smb creation_date: 2009-08-27T11:32:45Z [Term] id: VT:0015015 name: depression-related behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to responses to a stressful or pleasurable situation or stimulus" [MGI:MP, MGI:smb] is_a: VT:0002572 ! emotion/affect behavior trait created_by: smb creation_date: 2009-08-27T11:33:59Z [Term] id: VT:0015024 name: allogrooming behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the cleaning, parasite removal, surface covering adjustment, addition of conditioners to body surface, or other hygienic activites by one animal on another of the same species" [ABO:core, MGI:smb] is_a: VT:0001440 ! grooming behavior trait is_a: VT:0002557 ! conspecific interaction trait created_by: smb creation_date: 2009-08-27T05:34:00Z [Term] id: VT:0015026 name: neuron quantity namespace: Trait.ontology def: "The proportion or number of the functional cells of the nervous system that receive, conduct, and transmit impulses." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "neuron number" EXACT [] is_a: VT:0002882 ! neuron morphology trait created_by: smb creation_date: 2010-05-28T05:52:26Z [Term] id: VT:0015027 name: craniofacial physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the region of the body that includes the front part of the head from the chin to the top of the forehead, where the mouth, eyes, nose, and other features are and the part of the skull enclosing the brain." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015057 ! head physiology trait created_by: smb creation_date: 2009-08-28T01:52:47Z [Term] id: VT:0015028 name: organ of Corti supporting cell differentiation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process whereby relatively unspecialized cells acquire the specialized structural and/or functional features characteristic of the highly differentiated epithelial cells with distinctive morphological features that surround the hair cells in the organ of Corti." [MGI:GO "Definition from the Gene Ontology", MP:0008304] is_a: VT:0015111 ! inner ear development trait created_by: smb creation_date: 2009-08-28T04:35:46Z [Term] id: VT:0015029 name: outer ear development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of any of the components of the auricles or external acoustic meatus during their formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003938 ! ear development trait created_by: smb creation_date: 2009-08-28T05:35:20Z [Term] id: VT:0015031 name: behavioral response to xenobiotic stimulus trait namespace: Trait.ontology def: "any measurable or observable characteristic related to behavior or change in behavior in response to exposure to a foreign compound" [MGI:MP, MGI:smb] is_a: VT:0010442 ! behavior trait created_by: smb creation_date: 2009-10-29T11:50:49Z [Term] id: VT:0015032 name: behavioral response to alcohol trait namespace: Trait.ontology def: "any measurable or observable characteristic related to a change in behavior elicited by alcohol consumption" [MGI:smb] is_a: VT:0002568 ! behavioral response to addictive substance trait created_by: smb creation_date: 2009-10-29T11:59:33Z [Term] id: VT:0015035 name: auditory cortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the region of the cerebral cortex that receives the auditory radiation from the medial geniculate body, a thalamic cell group receiving auditory input from the cochlear nuclei in the rhombencephalon and is responsible for processing of auditory (sound) information." [MP:0004631] is_a: VT:0000801 ! temporal lobe morphology trait created_by: smb creation_date: 2010-05-07T02:51:56Z [Term] id: VT:0015036 name: reproductive life span namespace: Trait.ontology def: "The period of time in which an organism can produce offspring." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "reproductive lifespan" EXACT [] is_a: VT:0002161 ! female fecundity trait is_a: VT:0005372 ! life span trait created_by: smb creation_date: 2009-10-29T03:52:21Z [Term] id: VT:0015037 name: gland development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of an organized aggregation of cells functioning as a secretory or excretory organ." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:1000782 ! endocrine/exocrine system trait created_by: smb creation_date: 2009-10-29T05:15:10Z [Term] id: VT:0015038 name: coat/hair development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010008 ! skin adnexa development trait created_by: smb creation_date: 2009-10-29T05:25:55Z [Term] id: VT:0015039 name: body width namespace: Trait.ontology def: "The distance from side to side of the body of an organism, perpendicular to the axis along which height is measured." [Dorland:Dorlands Illustrated Medical Dictionary] is_a: VT:0100005 ! body size trait created_by: smb creation_date: 2010-01-08T11:13:52Z [Term] id: VT:0015042 name: egg production trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the generation of eggs by an organism; after development of the ovum is complete." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003699 ! female reproductive system physiology trait created_by: smb creation_date: 2010-01-15T12:16:05Z [Term] id: VT:0015043 name: milk amount namespace: Trait.ontology def: "The proportion, quantity, or volume of milk produced by the mammary gland." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003838 ! milk secretion trait created_by: mgi creation_date: 2010-01-21T04:32:49Z [Term] id: VT:0015044 name: beak morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the horny projection of the face containing the jaws, mouth and nares and lacking teeth." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "bill morphology trait" EXACT [] synonym: "rostrum morphology trait" EXACT [] is_a: VT:0003743 ! facial morphology trait is_a: VT:0015066 ! surface structure morphology trait created_by: smb creation_date: 2010-02-09T05:14:49Z [Term] id: VT:0015045 name: thoracic cavity morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the cavity in the vertebrate body enclosed by the ribcage between the diaphragm and the neck, and contains the lungs, heart, thoracic aorta, pulmonary artery and its branches, thymus gland, and the respiratory airway." [MP:0004733] is_a: VT:0004134 ! thorax morphology trait created_by: smb creation_date: 2010-02-10T03:32:14Z [Term] id: VT:0015046 name: hippocampus neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons located in the hippocampus." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "hippocampal neuron morphology trait" EXACT [] is_a: VT:0000807 ! hippocampus morphology trait is_a: VT:0002882 ! neuron morphology trait created_by: smb creation_date: 2010-05-07T03:31:04Z [Term] id: VT:0015047 name: head development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the portion of the body containing the brain and organs of sight, hearing, taste, and smell during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0005382 ! head trait created_by: smb creation_date: 2010-02-11T03:03:27Z [Term] id: VT:0015048 name: limb regeneration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which a limb or portion of a limb is regrown after damage or amputation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015070 ! appendage physiology trait created_by: smb creation_date: 2010-02-11T03:51:30Z [Term] id: VT:0015049 name: tail regeneration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which the tail or portion of the tail is regrown after damage or amputation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015070 ! appendage physiology trait created_by: smb creation_date: 2010-02-11T03:55:01Z [Term] id: VT:0015050 name: paravertebral ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the groups of postsynaptic neurons located at intervals along the sympatheic trunk, including the superior cervical, middle cervical and stellate (cervicothoracic) ganglia as well as the thoracic, lumbar and sacral ganglia." [MP:0008317] is_a: VT:0001008 ! sympathetic ganglion morphology trait created_by: smb creation_date: 2010-04-21T04:14:52Z [Term] id: VT:0015051 name: prevertebral ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the sympathetic ganglia located in front of the vertebral column and associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia." [MP:0008316] is_a: VT:0001008 ! sympathetic ganglion morphology trait created_by: smb creation_date: 2010-04-21T04:17:52Z [Term] id: VT:0015052 name: surface structure trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the organism subdivision which is the collection of anatomical structures on the body surface." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: TAO:0000292 is_a: VT:0100003 ! organism subdivision trait created_by: smb creation_date: 2010-02-11T05:02:13Z [Term] id: VT:0015053 name: opercular flap morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the structure that covers the gills." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015066 ! surface structure morphology trait created_by: smb creation_date: 2010-02-11T05:08:24Z [Term] id: VT:0015054 name: lumbar dorsal root ganglion morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404] is_a: VT:0000961 ! dorsal root ganglion morphology trait created_by: smb creation_date: 2010-04-21T04:47:08Z [Term] id: VT:0015055 name: cloaca morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the posterior opening that serves as the only such opening for the intestinal, reproductive and urinary tracts." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015066 ! surface structure morphology trait created_by: smb creation_date: 2010-02-11T05:35:17Z [Term] id: VT:0015056 name: cloaca respiration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the movement of gases into and out of the posterior opening that serves as the only such opening for the intestinal, reproductive and urinary tracts." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015068 ! surface structure physiology trait created_by: smb creation_date: 2010-02-11T05:35:29Z [Term] id: VT:0015057 name: head physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0005382 ! head trait created_by: smb creation_date: 2010-02-12T04:11:43Z [Term] id: VT:0015058 name: brain physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the functions of or processes in the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "brain function" NARROW [] is_a: VT:0003633 ! nervous system physiology trait created_by: smb creation_date: 2010-02-12T04:21:59Z [Term] id: VT:0015059 name: thorax trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the portion of the body between the head and the abdomen; in mammals this region is formed by the sternum, thoracic vertebrae and ribs and does not include the upper limbs." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "chest trait" NARROW [] is_a: VT:0100003 ! organism subdivision trait created_by: smb creation_date: 2010-02-19T01:44:04Z [Term] id: VT:0015060 name: rump trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the hindquarters." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0100003 ! organism subdivision trait created_by: smb creation_date: 2010-02-19T01:45:39Z [Term] id: VT:0015061 name: thorax development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the thorax during its formation and differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "chest development trait" NARROW [] is_a: VT:0015059 ! thorax trait created_by: smb creation_date: 2010-02-19T01:54:11Z [Term] id: VT:0015063 name: parasympathetic postganglionic fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any or all of the cholinergic axonal fibers projecting from a parasympathetic ganglion to an effector organ." [MP:0008313] is_a: VT:0001033 ! parasympathetic nervous system morphology trait created_by: smb creation_date: 2010-04-21T04:51:37Z [Term] id: VT:0015064 name: parasympathetic preganglionic fiber morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any or all of the cholinergic axonal fibers projecting from the CNS to a parasympathetic ganglion." [MP:0008311] is_a: VT:0001033 ! parasympathetic nervous system morphology trait created_by: smb creation_date: 2010-04-21T04:52:29Z [Term] id: VT:0015065 name: gustatory system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal, or the morphology of the structures involved in any of these events." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "taste trait" RELATED [] is_a: VT:0015095 ! sensory trait created_by: smb creation_date: 2010-04-26T11:48:17Z [Term] id: VT:0015066 name: surface structure morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organism subdivision which is the collection of anatomical structures on the body surface." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015052 ! surface structure trait created_by: smb creation_date: 2010-02-19T02:41:51Z [Term] id: VT:0015067 name: surface structure development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the organism subdivision which is the collection of anatomical structures on the body surface." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015052 ! surface structure trait created_by: smb creation_date: 2010-02-19T02:42:19Z [Term] id: VT:0015068 name: surface structure physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organism subdivision which is the collection of anatomical structures on the body surface." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015052 ! surface structure trait created_by: smb creation_date: 2010-02-19T02:42:39Z [Term] id: VT:0015069 name: appendage development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of an external body part that projects from the body during its formation or differentiation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015067 ! surface structure development trait created_by: smb creation_date: 2010-02-19T02:44:06Z [Term] id: VT:0015070 name: appendage physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in an external body part that projects from the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015068 ! surface structure physiology trait created_by: smb creation_date: 2010-02-19T02:44:50Z [Term] id: VT:0015071 name: appendage morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of an external body part that projects from the body." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015066 ! surface structure morphology trait created_by: smb creation_date: 2010-02-19T02:45:44Z [Term] id: VT:0015072 name: fin morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the appendages primarily used to maintain position, move, steer or stop in a liquid medium." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015071 ! appendage morphology trait created_by: smb creation_date: 2010-02-19T02:46:09Z [Term] id: VT:0015073 name: fin regeneration trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process by which a fin or portion of a fin is regrown after damage or amputation." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: TAO:0001269 "regenerating fin" is_a: VT:0015070 ! appendage physiology trait created_by: smb creation_date: 2010-02-19T02:46:30Z [Term] id: VT:0015074 name: organ system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of an anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", TAO:0001439 "anatomical system"] xref: CARO:0000011 xref: TAO:0001439 is_a: VT:0000001 ! vertebrate trait created_by: smb creation_date: 2010-02-19T03:40:56Z [Term] id: VT:0015075 name: styloid process of temporal bone morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0008023] is_a: VT:0005272 ! temporal bone morphology trait created_by: smb creation_date: 2010-02-22T04:13:15Z [Term] id: VT:0015076 name: subarcuate fossa morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0009822] synonym: "floccular fossa morphology trait" EXACT [] is_a: VT:0005272 ! temporal bone morphology trait created_by: smb creation_date: 2010-02-22T04:14:26Z [Term] id: VT:0015077 name: molecule homeostasis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the an internal equilibrium of proteins, minerals, nutrients, gases, or other substances." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "chemical homeostasis" RELATED [] xref: GO:0048878 "chemical homeostasis" is_a: VT:0001764 ! homeostasis trait created_by: smb creation_date: 2010-03-10T03:51:23Z [Term] id: VT:0015078 name: blood homeostasis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the internal equilibrium in the cell containing fluid that circulates through the body, carrying nourishment, electrolytes, hormones, vitamins, antibodies, heat, and oxygen to the tissues and taking away waste matter and carbon dioxide." [ISBN:0-8036-0655-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "blood chemistry" RELATED [] synonym: "blood molecular composition" RELATED [] is_a: VT:0001764 ! homeostasis trait created_by: smb creation_date: 2010-03-10T04:08:47Z [Term] id: VT:0015079 name: sterol homeostasis trait namespace: Trait.ontology def: "Any measurable characteristic related to any process involved in the maintenance of an internal equilibrium of sterol within an organism or cell." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0055092 "sterol homeostasis" is_a: VT:0002118 ! lipid homeostasis trait created_by: smb creation_date: 2010-03-10T04:55:48Z [Term] id: VT:0015085 name: cerebellum vermis lobule morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres; in humans, vermis lobule regions may be nearly continuous with the cerebellar hemisphere lobules dorsally but are separated by deeper longitudinal fissures in the ventral regions; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres." [MP:0009957] synonym: "cerebellar vermis lobule morphology trait" EXACT [] is_a: VT:0000864 ! cerebellum vermis morphology trait created_by: smb creation_date: 2010-05-07T05:33:47Z [Term] id: VT:0015086 name: urine mineral amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of any inorganic element or compound that has importance in body functions." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: ATOL:0001494 is_a: VT:0000192 ! mineral amount is_a: VT:0001757 ! urine molecular composition trait created_by: smb creation_date: 2010-03-17T05:01:56Z [Term] id: VT:0015087 name: vitamin metabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to any process that causes a chemical change in any of the organic substances found in food that are necessary in trace amounts for normal metabolic function." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: GO:0006766 "vitamin metabolic process" is_a: VT:0002121 ! metabolism trait created_by: smb creation_date: 2010-03-17T05:11:33Z [Term] id: VT:0015088 name: glucose metabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0006006 "glucose metabolic pathway" is_a: VT:0002121 ! metabolism trait created_by: smb creation_date: 2010-03-22T02:08:35Z [Term] id: VT:0015089 name: alcohol metabolism trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom." [MGI:GO "Definition from the Gene Ontology"] xref: GO:0006066 "alcohol metabolic process" is_a: VT:0002121 ! metabolism trait created_by: smb creation_date: 2010-03-22T02:22:27Z [Term] id: VT:0015090 name: artery molecular composition trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the proportions of molecules (proteins, minerals, nutrients, gases, or other substances) within the blood vessels that carry blood away from the heart." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000170 ! blood vessel physiology trait created_by: smb creation_date: 2010-04-05T04:21:59Z [Term] id: VT:0015093 name: hearing system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal, or to the morphology of the structures involved in any of these events." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015095 ! sensory trait created_by: smb creation_date: 2010-04-26T03:02:46Z [Term] id: VT:0015094 name: equilibrioception system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal, or the morphology of the structures involved in any of these events." [GO:0050957, MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] comment: Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion. is_a: VT:0015095 ! sensory trait created_by: smb creation_date: 2010-04-26T03:11:11Z [Term] id: VT:0015095 name: sensory trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal, or the morphology of the structures involved in any of these events." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] synonym: "sensory perception trait" NARROW [] xref: GO:0007600 "sensory perception" is_a: VT:1000781 ! nervous/sensory system trait created_by: smb creation_date: 2010-04-26T03:14:37Z [Term] id: VT:0015096 name: equilibrioception system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the structures involved in the processes by which an organism can perceive its orientation with respect to gravity." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015094 ! equilibrioception system trait created_by: smb creation_date: 2010-04-26T03:26:51Z [Term] id: VT:0015097 name: equilibrioception system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the structures involved in the combination of processes by which an organism can perceive its orientation with respect to gravity as well as the overall process by which an organism can perceive its orientation with respect to gravity." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: GO:0050957 "equilibrioception" is_a: VT:0015094 ! equilibrioception system trait created_by: smb creation_date: 2010-04-26T03:29:11Z [Term] id: VT:0015098 name: nociception system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the structures involved in the series of events required for an organism to sense pain." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0005392 ! nociception system trait created_by: smb creation_date: 2010-04-26T05:14:43Z [Term] id: VT:0015099 name: touch perception trait namespace: Trait.ontology is_a: VT:0015095 ! sensory trait created_by: smb creation_date: 2010-04-26T05:17:07Z [Term] id: VT:0015100 name: nociception system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the structures required for an organism to sense pain." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] xref: GO:0019233 "sensory perception of pain" is_a: VT:0005392 ! nociception system trait created_by: smb creation_date: 2010-04-26T05:18:33Z [Term] id: VT:0015101 name: proprioception system trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the series of events by which an organism senses the position, location, orientation, and movement of the body and its parts, or to the morphology of the structures involved in any of these events." [MGI:GO "Definition from the Gene Ontology", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0015095 ! sensory trait created_by: smb creation_date: 2010-04-28T02:08:00Z [Term] id: VT:0015102 name: parasympathetic cholinergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that utilize acetylcholine as a neurotransmitter, innervate smooth muscle, cardiac muscle and glands and regulate homeostasis." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001037 ! parasympathetic neuron morphology trait is_a: VT:0001038 ! cholinergic neuron morphology trait created_by: smb creation_date: 2010-04-28T02:19:14Z [Term] id: VT:0015103 name: sympathetic cholinergic neuron morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neurons that utilize acetylcholine as a neurotransmitter, innervate smooth muscle, cardiac muscle and glands and mediate the body's response to stressful situations." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0001025 ! sympathetic neuron morphology trait is_a: VT:0001038 ! cholinergic neuron morphology trait created_by: smb creation_date: 2010-04-28T02:23:44Z [Term] id: VT:0015104 name: hippocampus pyramidal cell layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the hippocampal layer containing neurons with pyramidal shaped cell bodies." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0000813 ! hippocampus layer morphology trait created_by: smb creation_date: 2010-04-28T05:16:42Z [Term] id: VT:0015105 name: cerebrum morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the largest part of the brain, derived from the telencephalon, and is composed of a right and a left hemisphere each which contains an outer cerebral cortex and a subcortical basal ganglia; cerebral functions include sensorimotor, emotional, and intellectual activities." [MP:0008540] synonym: "cerebral hemispheres morphology trait" RELATED [] is_a: VT:0000787 ! telencephalon morphology trait created_by: smb creation_date: 2010-04-28T05:38:34Z [Term] id: VT:0015106 name: neocortex morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the larger part of the mammalian cerebral cortex, distinguished from the allocortex by being composed of a larger number of nerve cells arranged in six layers." [MP:0008547] synonym: "homotypic cortex morphology trait" RELATED [] synonym: "homotypical cortex morphology trait" RELATED [] synonym: "isocortex morphology trait" RELATED [] synonym: "neopallium morphology trait" RELATED [] synonym: "nonolfactory cortex morphology trait" RELATED [] is_a: VT:0000788 ! cerebral cortex morphology trait created_by: smb creation_date: 2010-04-28T05:42:58Z [Term] id: VT:0015107 name: sympathetic neuron innervation pattern trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the arrangement, distribution or supply of nerve fibers to sympathetic termini.\nconsider: VT:0010296, VT:0010297" [MGI:MP "Definition from the Mammalian Phenotype ontology"] is_obsolete: true created_by: smb creation_date: 2010-05-10T05:11:19Z [Term] id: VT:0015108 name: neurite morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the neuronal process, either a dendrite or an axon in vivo, or a filamentous projection from a neuron such as is seen in tissue culture." [MP:0008415] is_a: VT:0002882 ! neuron morphology trait created_by: smb creation_date: 2010-05-10T05:19:56Z [Term] id: VT:0015109 name: dendrite morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the highly branched tree-like process of a neuron that serves as a receptive field and conducts impulses toward the cell body." [MP:0008143] is_a: VT:0015108 ! neurite morphology trait created_by: smb creation_date: 2010-05-10T05:21:36Z [Term] id: VT:0015110 name: synapse morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the membrane junction site of a nerve cell to a target cell, such as another nerve cell, an effector cell, or a sensory receptor cell; transmission of nerve impulses may be mediated by chemical or by electrical means." [MP:0009538] is_a: VT:0002882 ! neuron morphology trait created_by: smb creation_date: 2010-05-12T04:47:44Z [Term] id: VT:0015111 name: inner ear development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of any of the components the labyrinth, including the semicircular canals, vestibule and cochlea." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0003938 ! ear development trait created_by: smb creation_date: 2010-06-07T05:25:56Z [Term] id: VT:0100000 name: humerus size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0005296 ! humerus morphology trait created_by: caripark creation_date: 2009-09-04T03:32:20Z [Term] id: VT:0100001 name: tibia size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0000558 ! tibia morphology trait created_by: caripark creation_date: 2009-09-04T03:33:55Z [Term] id: VT:0100002 name: connective tissue trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical or functional supporting tissue of the body, a major constituent of which is an extracellular matrix of ground substance, protein fibers, and structural glycoproteins." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-09-29T10:06:10Z [Term] id: VT:0100003 name: organism subdivision trait namespace: Trait.ontology def: "Any measurable or observable characteristic of an anatomical structure which is a subpart of the whole organism; the mereological sum of these is the whole organism." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator", TAO:0001308 "organism subdivision"] xref: TAO:0001308 is_a: VT:0000001 ! vertebrate trait created_by: caripark creation_date: 2009-09-29T10:25:08Z [Term] id: VT:0100005 name: body size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the overall physical magnitude of an organism." [VTO:CP "Cari Park, Iowa State University Curator"] xref: ATOL:0000089 is_a: VT:0010454 ! organism trait created_by: caripark creation_date: 2009-09-29T11:15:02Z [Term] id: VT:0100006 name: anatomical relation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the location of a part of the body in relation to the body as a whole or to other parts." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0010454 ! organism trait created_by: caripark creation_date: 2009-09-29T11:16:56Z [Term] id: VT:0100007 name: growth trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the increase in size of an organism." [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"] is_a: VT:0010454 ! organism trait created_by: caripark creation_date: 2009-09-29T11:37:28Z [Term] id: VT:0100011 name: urine enzyme amount namespace: Trait.ontology def: "The proportion, quantity, or volume in the urine of proteins that act as catalysts for biological reactions." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "urine enzyme level" EXACT [] is_a: VT:0005160 ! urine protein amount created_by: dmunzenmaier creation_date: 2009-10-22T09:55:56Z [Term] id: VT:0100012 name: kidney blood vessel physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the network of vessels that convey blood in the paired organs responsible for urine excretion and regulation of ion concentrations." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:DHM "Diane Munzenmaier, Rat Genome Database"] synonym: "kidney vascular physiology trait" EXACT [] synonym: "renal blood vessel physiology trait" EXACT [] is_a: VT:0002136 ! kidney physiology trait created_by: dmunzenmaier creation_date: 2009-10-22T10:45:09Z [Term] id: VT:0100015 name: circulatory system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology of the system that moves extracellular fluids to and from tissues during its formation and differentiation." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000784 ! circulatory system trait created_by: caripark creation_date: 2009-11-17T01:10:51Z [Term] id: VT:0100016 name: circulatory system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic pertaining to the shape, structure, color, or pattern of the system that moves extracellular fluids to and from tissues." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000784 ! circulatory system trait created_by: caripark creation_date: 2009-11-17T01:18:52Z [Term] id: VT:0100017 name: circulatory system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic pertaining to the function of or processes in the system that moves extracellular fluids to and from tissues." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000784 ! circulatory system trait created_by: caripark creation_date: 2009-11-17T01:18:52Z [Term] id: VT:0100018 name: integumentary system development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation or differentiation of the system consisting of the skin and its derivatives." [MeSH:D034582 "integumentary system"] is_a: VT:0015067 ! surface structure development trait is_a: VT:1000775 ! integumentary system trait created_by: caripark creation_date: 2009-11-17T01:29:47Z [Term] id: VT:0100019 name: integumentary system physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the system consisting of the skin and its derivatives." [MeSH:D034582 "integumentary system"] is_a: VT:0015068 ! surface structure physiology trait is_a: VT:1000775 ! integumentary system trait created_by: caripark creation_date: 2009-11-17T01:32:00Z [Term] id: VT:0100020 name: integumentary system morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the system consisting of the skin and its derivatives." [MeSH:D034582 "integumentary system"] is_a: VT:0015066 ! surface structure morphology trait is_a: VT:1000775 ! integumentary system trait created_by: caripark creation_date: 2009-11-17T01:32:00Z [Term] id: VT:0100021 name: mammary alveoli size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the sac-like structure of the mammary gland that synthesizes and secretes milk after pregnancy." [ATOL:0000390, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0000871 is_a: VT:0001884 ! mammary alveoli morphology trait is_a: VT:0010002 ! mammary gland size trait created_by: caripark creation_date: 2009-11-19T10:32:22Z [Term] id: VT:0100022 name: mammary alveoli diameter namespace: Trait.ontology def: "The distance across the sac-like structure of the mammary gland that synthesizes and secretes milk after pregnancy." [ATOL:0000390, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0000882 is_a: VT:0100021 ! mammary alveoli size trait created_by: caripark creation_date: 2009-11-19T10:32:22Z [Term] id: VT:0100023 name: mammary alveoli epithelial cell quantity namespace: Trait.ontology def: "The proportion or number of epithelial cells surrounding the mammary alveoli." [ATOL:0000223, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] xref: ATOL:0000223 is_a: VT:0001884 ! mammary alveoli morphology trait created_by: caripark creation_date: 2009-11-19T10:32:22Z [Term] id: VT:0100024 name: mammary gland fetal development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation during the fetal period of the milk-secreting gland in female mammals." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", VTO:INRA "INRA curator"] is_a: VT:0000628 ! mammary gland development trait created_by: caripark creation_date: 2009-11-19T11:13:17Z [Term] id: VT:0100025 name: mammary gland cistern morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the largest area for milk accumulation in the ductal system of the mammary gland in some species." [ATOL:0000930, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] is_a: VT:0000627 ! mammary gland morphology trait created_by: caripark creation_date: 2009-11-19T11:28:02Z [Term] id: VT:0100026 name: mammary gland cistern capacity namespace: Trait.ontology def: "The volume of or amount contained in the largest area for milk accumulation in the ductal system of the mammary gland in some species." [ATOL:0000930, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "mammary gland cistern volume" EXACT [] xref: ATOL:0000930 is_a: VT:0010002 ! mammary gland size trait is_a: VT:0100025 ! mammary gland cistern morphology trait created_by: caripark creation_date: 2009-11-19T11:33:40Z [Term] id: VT:0100027 name: nipple shape trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical form or contours of the projection near the center of the mammary gland, on the surface of which the lactiferous ducts open." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", VTO:INRA "INRA curator"] synonym: "teat shape" RELATED [] xref: ATOL:0000940 is_a: VT:0006078 ! nipple morphology trait created_by: caripark creation_date: 2009-11-19T11:57:08Z [Term] id: VT:0100028 name: nipple diameter namespace: Trait.ontology def: "The distance across the erectile protuberance at the tip of the mammary gland in which the mammary ducts terminate and from which milk can be secreted." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:MS] synonym: "teat diameter" RELATED [] is_a: VT:0006078 ! nipple morphology trait created_by: caripark creation_date: 2009-11-19T11:57:08Z [Term] id: VT:0100030 name: nipple angle namespace: Trait.ontology def: "The angle between the vertical and the teat axis." [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "teat angle" RELATED [] xref: ATOL:0000942 is_a: VT:0006078 ! nipple morphology trait created_by: caripark creation_date: 2009-11-19T11:57:08Z [Term] id: VT:0100031 name: mammary blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the volume of blood that flows through the vascular system of the mammary gland." [ATOL:0000944, VTO:INRA "INRA curator"] xref: ATOL:0000944 is_a: VT:0001881 ! mammary gland physiology trait created_by: caripark creation_date: 2009-11-19T02:50:18Z [Term] id: VT:0100033 name: mammary gland circumference namespace: Trait.ontology def: "The distance around the milk-producing glands in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", VTO:INRA "INRA curator"] synonym: "udder circumference" RELATED [] xref: ATOL:0000947 is_a: VT:0010002 ! mammary gland size trait created_by: caripark creation_date: 2009-11-19T03:09:25Z [Term] id: VT:0100034 name: mammary gland mass namespace: Trait.ontology def: "The amount of matter in the milk-producing glands in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", VTO:INRA "INRA curator"] synonym: "mammary gland weight" RELATED [] synonym: "udder weight" RELATED [] xref: ATOL:0000953 is_a: VT:0010002 ! mammary gland size trait created_by: caripark creation_date: 2009-11-19T03:10:39Z [Term] id: VT:0100035 name: udder size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the organ in certain species containing two or more mammary glands, each with its own nipple." [http://www.merriam-webster.com/dictionary/udder, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000067 ! udder morphology trait created_by: caripark creation_date: 2009-11-19T03:11:44Z [Term] id: VT:0100036 name: mammary alveoli capacity namespace: Trait.ontology def: "The volume of or amount contained in the sac-like structure of the mammary gland that synthesizes and secretes milk after pregnancy." [ATOL:0000390, VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "mammary alveoli volume" EXACT [] xref: ATOL:0000955 is_a: VT:0100021 ! mammary alveoli size trait created_by: caripark creation_date: 2009-11-19T03:13:22Z [Term] id: VT:1000000 name: body conformation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the symmetry, size and shape of the various body regions relative to each other or general appearance of an organism." [Saunders:Saunders Veterinary Dictionary] xref: ATOL:0000987 is_a: VT:0100006 ! anatomical relation trait created_by: caripark creation_date: 2008-11-10T10:09:36Z [Term] id: VT:1000023 name: food conversion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the organism's ability to convert food into body mass." [RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0005448 ! energy balance trait created_by: caripark creation_date: 2008-11-10T10:38:24Z [Term] id: VT:1000047 name: blood creatine kinase amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of the enzyme creatine kinase, which uses ATP to convert creatine to phosphocreatine and ADP; elevated levels are indicative of muscle damage." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "circulating creatine kinase level" RELATED [] synonym: "creatine kinase concentration" RELATED [] is_a: VT:0001570 ! blood enzyme amount created_by: caripark creation_date: 2008-11-10T01:14:43Z [Term] id: VT:1000059 name: total heart ventricle morphology trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the shape, structure, color or pattern of both of the lower chambers of the heart." [VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true created_by: caripark creation_date: 2008-11-10T01:14:43Z [Term] id: VT:1000060 name: troponin T amount namespace: Trait.ontology def: "The proportion, quantity, or volume in a body tissue or fluid of one of a complex of three regulatory proteins required for skeletal and cardiac muscle contraction; used as an indicator for myocardial damage." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "troponin T protein concentration" EXACT [] is_a: VT:0010120 ! protein amount created_by: caripark creation_date: 2008-11-10T01:14:43Z [Term] id: VT:1000062 name: chest circumference namespace: Trait.ontology def: "The distance around an organism's thorax measured just posterior to the forelimbs." [RGD:MS] synonym: "chest girth" EXACT [] synonym: "heart girth" EXACT [] is_a: VT:0004134 ! thorax morphology trait created_by: caripark creation_date: 2008-11-10T01:17:50Z [Term] id: VT:1000066 name: hip width namespace: Trait.ontology def: "The distance from side to side between the points of both hips." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "hook width" EXACT [] is_a: VT:0100003 ! organism subdivision trait created_by: caripark creation_date: 2008-11-10T01:17:50Z [Term] id: VT:1000067 name: udder morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the organ in certain species containing two or more mammary glands, each with its own nipple." [http://www.merriam-webster.com/dictionary/udder, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0001119 ! female reproductive system morphology trait created_by: caripark creation_date: 2008-11-10T01:17:50Z [Term] id: VT:1000072 name: milk somatic cell quantity namespace: Trait.ontology def: "The proportion or number of somatic cells (leukocytes and epithelial cells) in milk; a high number is an indicator of mastitis." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "milk somatic cell count" RELATED [] synonym: "somatic cell score" RELATED [] xref: ATOL:0000991 is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2008-11-10T01:29:25Z [Term] id: VT:1000111 name: bone mass namespace: Trait.ontology def: "The amount of matter in osseous tissue forming a part of the skeleton; consists of a dense outer layer surrounded by the periosteum, and an inner spongy substance." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] is_a: VT:0010003 ! bone morphology trait created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: VT:1000120 name: intercostal muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib." [MeSH:D007366 "intercostal muscles"] synonym: "rib muscle thickness" EXACT [] is_a: VT:0010114 ! intercostal muscle size trait created_by: caripark creation_date: 2008-11-10T01:44:59Z [Term] id: VT:1000121 name: lumbar vertebra quantity namespace: Trait.ontology def: "The proportion or number of bony segments of the spinal column located anterior/superior to the sacral vertebrae and posterior/inferior to the thoracic vertebrae." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "lumbar vertebra number" EXACT [] synonym: "lumbar vertebrae number" EXACT [] is_a: VT:0000138 ! vertebra quantity created_by: caripark creation_date: 2008-11-10T01:45:36Z [Term] id: VT:1000122 name: thoracic vertebra quantity namespace: Trait.ontology def: "The proportion or number of bony segments of the vertebral column located anterior to the lumbar vertebrae and posterior to the cervical vertebrae, which articulate with the ribs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "thoracic vertebra number" EXACT [] is_a: VT:0000138 ! vertebra quantity is_a: VT:0003047 ! thoracic vertebra morphology trait created_by: caripark creation_date: 2008-11-10T01:45:36Z [Term] id: VT:1000126 name: adipose thickness namespace: Trait.ontology def: "The distance between the surfaces of a layer of fat-storing tissue." [MP:0000003] synonym: "fat depth" EXACT [] synonym: "fat thickness" EXACT [] is_a: VT:0005452 ! adipose amount created_by: caripark creation_date: 2008-11-10T01:50:29Z [Term] id: VT:1000130 name: internal adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of fat-storing tissue in the body cavity, specifically in the areas of the kidneys, pelvis, and heart." [http://msucares.com/livestock/beef/stocker_aug2008.pdf "Interpreting Carcass Data", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "internal adipose weight" RELATED [] synonym: "internal fat weight" RELATED [] synonym: "kidney, pelvic, and heart fat weight" RELATED [] synonym: "KPH fat weight" RELATED [] is_a: VT:0001781 ! white adipose amount created_by: caripark creation_date: 2008-11-10T01:50:29Z [Term] id: VT:1000135 name: subcutaneous adipose thickness namespace: Trait.ontology def: "The distance between the surfaces of the fat-storing layer directly beneath the skin." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "backfat thickness" RELATED [] synonym: "fatback thickness" RELATED [] synonym: "subcutaneous fat thickness" EXACT [] is_a: VT:0004127 ! hypodermis thickness is_a: VT:0010045 ! subcutaneous adipose amount is_a: VT:1000126 ! adipose thickness created_by: caripark creation_date: 2008-11-10T01:50:57Z [Term] id: VT:1000146 name: longissimus dorsi mass namespace: Trait.ontology def: "The amount of matter in the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis." [ISBN:0-914294-08-3 "Gray's Anatomy"] synonym: "loin weight" RELATED [] synonym: "longissimus dorsi weight" RELATED [] synonym: "longissimus muscle weight" RELATED [] synonym: "longissimus thoracis weight" RELATED [] is_a: VT:0010117 ! longissimus dorsi size trait is_a: VT:1000712 ! skeletal muscle mass created_by: caripark creation_date: 2008-11-10T01:59:03Z [Term] id: VT:1000149 name: intercostal muscle mass namespace: Trait.ontology def: "The amount of matter in the respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib." [MeSH:D007366 "intercostal muscles"] synonym: "intercostal muscle weight" RELATED [] synonym: "rib muscle weight" RELATED [] is_a: VT:0010114 ! intercostal muscle size trait created_by: caripark creation_date: 2008-11-10T01:59:03Z [Term] id: VT:1000152 name: wellness/fitness trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the healthfulness of an organism." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "number of veterinary treatments" NARROW [] is_a: VT:0010454 ! organism trait created_by: caripark creation_date: 2008-11-10T02:40:05Z [Term] id: VT:1000161 name: total milk fat amount namespace: Trait.ontology def: "The total proportion, quantity, or volume of fat in milk." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "milk fat concentration" RELATED [] synonym: "milk fat percentage" RELATED [] synonym: "total milk fat content" EXACT [] is_a: VT:0010261 ! milk fat amount created_by: caripark creation_date: 2008-11-10T02:43:21Z [Term] id: VT:1000165 name: milk protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume in milk of macromolecules consisting of long sequences of amino acids in peptide linkage." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "milk protein concentration" RELATED [] synonym: "milk protein content" EXACT [] synonym: "milk protein percentage" RELATED [] is_a: VT:0004047 ! milk trait created_by: caripark creation_date: 2008-11-10T02:45:00Z [Term] id: VT:1000181 name: viable offspring quantity namespace: Trait.ontology def: "The proportion or number of offspring born alive." [RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "number of offspring born alive" EXACT [] synonym: "prenatal survival" EXACT [] synonym: "total number born alive" EXACT [] xref: ATOL:0001531 is_a: VT:1000189 ! offspring quantity created_by: caripark creation_date: 2008-11-10T02:59:38Z [Term] id: VT:1000189 name: offspring quantity namespace: Trait.ontology def: "The proportion or number of offspring born in single or multiple births." [RGD:MS, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "offspring number" EXACT [] synonym: "total number born" EXACT [] is_a: VT:0002161 ! female fecundity trait created_by: caripark creation_date: 2008-12-10T10:22:09Z [Term] id: VT:1000190 name: estrus intensity namespace: Trait.ontology def: "The degree to which the female displays the state of sexual excitement during which she is most receptive to mating." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "heat intensity" EXACT [] is_a: VT:0001927 ! estrous cycle trait created_by: caripark creation_date: 2008-11-10T02:59:38Z [Term] id: VT:1000197 name: stillborn birth quantity namespace: Trait.ontology def: "The proportion or number of offspring that have died before birth process is completed." [RGD:MS] synonym: "number of offspring stillborn" EXACT [] synonym: "number stillborn" EXACT [] synonym: "stillbirth" EXACT [] xref: ATOL:0001535 is_a: VT:1000189 ! offspring quantity created_by: caripark creation_date: 2008-11-10T02:59:38Z [Term] id: VT:1000205 name: nipple length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the nipple." [RGD:MS] synonym: "teat length" EXACT [] xref: ATOL:0001537 is_a: VT:0006078 ! nipple morphology trait created_by: caripark creation_date: 2008-11-10T03:02:18Z [Term] id: VT:1000206 name: nipple quantity namespace: Trait.ontology def: "The proportion or number of mammary gland projections containing the outlets of the milk ducts through which milk is excreted." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "nipple number" RELATED [] synonym: "teat number" RELATED [] xref: ATOL:0001538 is_a: VT:0006078 ! nipple morphology trait created_by: caripark creation_date: 2008-11-10T03:02:18Z [Term] id: VT:1000210 name: scrotum circumference namespace: Trait.ontology def: "The distance around the external sac of skin that encloses the testes." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "scrotal circumference" EXACT [] xref: ATOL:0001539 is_a: VT:0001150 ! scrotum size trait created_by: caripark creation_date: 2008-11-10T03:03:07Z [Term] id: VT:1000220 name: abdominal adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the fat-storing tissue lining the cavity bounded by the abdominal walls, the diaphragm, and the pelvis, and surrounding the internal organs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "abdominal fat weight" RELATED [] synonym: "leaf fat weight" RELATED [] is_a: VT:0001781 ! white adipose amount created_by: caripark creation_date: 2008-11-10T03:41:26Z [Term] id: VT:1000223 name: pectoralis muscle mass namespace: Trait.ontology def: "The amount of matter in either or both of the muscles that make up the upper and fore part of the chest that adduct and rotate the arm and lift the ribs." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MeSH:D010369 "pectoralis muscles"] synonym: "breast muscle weight" RELATED [] is_a: VT:0010116 ! pectoralis muscle size trait is_a: VT:1000712 ! skeletal muscle mass created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: VT:1000226 name: gizzard mass namespace: Trait.ontology def: "The amount of matter in the secondary, muscular stomach in some vertebrates used for grinding up food." [VTO:CP "Cari Park, Iowa State University Curator", VTO:INRA "INRA curator"] synonym: "gizzard weight" RELATED [] synonym: "tissue weight of the gizzard" RELATED [] xref: ATOL:0001541 is_a: VT:1000667 ! gizzard morphology trait created_by: caripark creation_date: 2008-11-10T03:45:54Z [Term] id: VT:1000238 name: feather development trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the morphology or physiology during formation and differentiation of the surface covering of birds, made of keratin." [http://www.britannica.com] synonym: "feathering" EXACT [] is_a: VT:0010008 ! skin adnexa development trait created_by: caripark creation_date: 2008-11-10T03:46:33Z [Term] id: VT:1000241 name: fear/anxiety-related behavior trait namespace: Trait.ontology def: "any measurable or observable characteristic related to responses in tests for fear or anxiety related behaviors" [MGI:MP, MGI:smb] subset: slim_chkn is_a: VT:0002572 ! emotion/affect behavior trait created_by: caripark creation_date: 2008-11-11T09:38:27Z [Term] id: VT:1000242 name: feather pecking trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the pecking of the other birds" [VTO:CP] subset: slim_chkn is_a: VT:0015008 ! total fat pad mass created_by: caripark creation_date: 2008-11-11T09:38:27Z [Term] id: VT:1000243 name: receiving feather pecking trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the receipt of pecking by the other birds" [VTO:CP] subset: slim_chkn is_a: VT:0015008 ! total fat pad mass created_by: caripark creation_date: 2008-11-11T09:38:27Z [Term] id: VT:1000244 name: social tendency trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the tendency to choose between freely available food or food in combination with social stimuli in a maze test with several options" [VTO:CP] subset: slim_chkn is_a: VT:0015008 ! total fat pad mass created_by: caripark creation_date: 2008-11-11T09:38:27Z [Term] id: VT:1000276 name: humerus area namespace: Trait.ontology def: "The two-dimensional extent of the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: calculated based on the length and width determined by x-ray densitometric scanning is_a: VT:0100000 ! humerus size trait created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000278 name: humerus mineral mass namespace: Trait.ontology def: "The amount of matter in the minerals (inorganic elements or compounds that have importance in body functions) in the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "humerus bone mineral content" EXACT [] synonym: "humerus bone mineral density" RELATED [] is_a: VT:0005296 ! humerus morphology trait is_a: VT:0010013 ! humerus mass created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000280 name: humerus width namespace: Trait.ontology def: "The distance from side to side of the bone of the forelimb that articulates with the scapula above and the radius and ulna below." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100000 ! humerus size trait created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000281 name: tibia area namespace: Trait.ontology def: "The two-dimensional extent of the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] comment: calculated based on the length and width determined by x-ray densitometric scanning synonym: "tibia area" EXACT [] is_a: VT:0100001 ! tibia size trait created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000283 name: tibia mineral mass namespace: Trait.ontology def: "The amount of matter in the minerals (inorganic elements or compounds that have importance in body functions) in the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "tibia bone mineral content" EXACT [] synonym: "tibia bone mineral density" RELATED [] is_a: VT:0010015 ! tibia mass created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000284 name: tibia strength trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the medial and larger of the two bones of the lower leg to withstand the application of force without yielding or breaking." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] is_a: VT:0001542 ! bone strength trait created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000286 name: tibia elasticity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the medial and larger of the two bones of the lower leg to recover size and shape after deformation in any way." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7298519] is_a: VT:0000072 ! bone elasticity trait created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000289 name: tibia width namespace: Trait.ontology def: "The distance from side to side of the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0100001 ! tibia size trait created_by: caripark creation_date: 2008-11-11T10:32:08Z [Term] id: VT:1000294 name: egg quantity namespace: Trait.ontology def: "The proportion or number of eggs produced." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "egg number" EXACT [] synonym: "number of eggs produced" EXACT [] is_a: VT:0015042 ! egg production trait created_by: caripark creation_date: 2008-11-11T10:43:29Z [Term] id: VT:1000361 name: cannon bone circumference namespace: Trait.ontology def: "The distance around the metacarpal or metatarsal bone(s) in some hoofed mammals, extending between the knee or hock and the fetlock." [http://www.aps.uoguelph.ca/~swatland/ch2_1.htm, VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0002115 ! skeleton extremities morphology trait created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: VT:1000369 name: femur size trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the physical magnitude of the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "femur dimensions" RELATED [] is_a: VT:0000559 ! femur morphology trait created_by: caripark creation_date: 2008-11-11T01:13:23Z [Term] id: VT:1000385 name: total vertebra quantity namespace: Trait.ontology def: "The total number of bony segments constituting the vertebral column." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "total vertebra number" EXACT [] is_a: VT:0000138 ! vertebra quantity created_by: caripark creation_date: 2008-11-11T01:16:14Z [Term] id: VT:1000401 name: muscle androstenone amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the testicular steroid androstenone detected in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", RGD:MS] is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000414 name: diaphragm mass namespace: Trait.ontology def: "The amount of matter in the thin musculomebranous barrier that separates the abdominal and thoracic cavities." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "diaphragm weight" RELATED [] is_a: VT:0010115 ! diaphragm size trait created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: VT:1000415 name: glycolytic potential namespace: Trait.ontology def: "OBSOLETE. The measure of the available glycogen stores in a body tissue or fluid; available glycogen is dependent on glycogen, glucose, glucose-6-phosphate, and lactate levels." [VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000419 name: total foot mass namespace: Trait.ontology def: "The total amount of matter in all of the pedal extremities of an organism." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000686 ! paw/hand/foot/hoof mass created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: VT:1000420 name: head mass namespace: Trait.ontology def: "The amount of matter in the portion of the body containing the brain and organs of sight, hearing, taste, and smell." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MP:0011496] is_a: VT:0000002 ! head size trait created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: VT:1000421 name: small intestine length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the upper portion of the digestive tract, between the stomach and the large intestine." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] xref: ATOL:0001080 is_a: VT:0000496 ! small intestine morphology trait is_a: VT:0010195 ! intestine length created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: VT:1000425 name: skin mass namespace: Trait.ontology def: "The amount of matter in the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "skin weight" RELATED [] is_a: VT:0002096 ! skin morphology trait created_by: caripark creation_date: 2008-11-11T02:01:04Z [Term] id: VT:1000429 name: muscle lactate amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the compound produced from pyruvate by lactate dehydrogenase in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000430 name: muscle cholesterol amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the most abundant steroid in animal tissues present in the total lipid extracted from the contractile tissue that effects movement." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "muscle cholesterol level" EXACT [] is_a: VT:0003947 ! cholesterol amount is_a: VT:1000479 ! muscle lipid amount created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000431 name: muscle indole amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this tryptophan degradation product detected in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000432 name: muscle water amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this clear, odorless, tasteless liquid in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000433 name: muscle protein amount namespace: Trait.ontology def: "The proportion, quantity, or volume of macromolecules consisting of long chains of amino acids in peptide linkage in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000434 name: muscle skatole amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this tryptophan degradation product detected in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "3-methyl indole concentration" EXACT [] is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2008-11-11T02:26:46Z [Term] id: VT:1000435 name: muscle conductivity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the contractile tissue that effects movement of an organ or part of the body to conduct electrical current." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0004145 ! muscle electrophysiology trait created_by: caripark creation_date: 2008-11-11T02:27:18Z [Term] id: VT:1000436 name: skeletal muscle conductivity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the striated muscles connected at either or both extremities with the bony framework of the body to conduct electrical current." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0010080 ! skeletal muscle physiology trait is_a: VT:1000435 ! muscle conductivity trait created_by: caripark creation_date: 2008-11-11T02:29:54Z [Term] id: VT:1000444 name: adipose androstenone amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the testicular steroid androstenone present in fat tissue." [PMID:12643481, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose androstenone content" EXACT [] synonym: "fat androstenone content" EXACT [] synonym: "fat androstenone level" EXACT [] is_a: VT:0010006 ! adipose molecular composition trait created_by: caripark creation_date: 2008-11-11T02:37:42Z [Term] id: VT:1000465 name: intermuscular adipose amount namespace: Trait.ontology def: "The proportion, quantity, or volume of fat-storing tissue present between the muscles." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "intermuscular adipose weight" RELATED [] synonym: "intermuscular fat weight" RELATED [] synonym: "seam fat weight" RELATED [] is_a: VT:0001781 ! white adipose amount created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: VT:1000468 name: intestinal adipose mass namespace: Trait.ontology def: "The amount of matter in the fat-storing tissue associated with the digestive tube passing from the stomach to the anus." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "caul fat weight" RELATED [] synonym: "intestinal adipose weight" RELATED [] synonym: "intestinal fat weight" RELATED [] is_a: VT:0010063 ! visceral adipose mass created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: VT:1000472 name: subcutaneous adipose mass namespace: Trait.ontology def: "The amount of matter in the fat-storing layer directly beneath the skin." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "subcutaneous adipose weight" RELATED [] synonym: "subcutaneous fat weight" RELATED [] is_a: VT:0010017 ! white adipose mass is_a: VT:0010045 ! subcutaneous adipose amount created_by: caripark creation_date: 2008-11-11T02:48:24Z [Term] id: VT:1000479 name: muscle lipid amount namespace: Trait.ontology def: "The proportion, quantity, or volume of fat-soluble substances (molecules composed of carbon and hydrogen and are characteristically insoluble in water) in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0001547 ! lipid amount is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2008-11-11T02:47:13Z [Term] id: VT:1000480 name: intramuscular adipose mass namespace: Trait.ontology def: "The amount of matter in the fat-storing cells/tissue present within skeletal muscle." [PMID:17705816, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "intramuscular adipose weight" RELATED [] synonym: "intramuscular fat weight" RELATED [] is_a: VT:0010017 ! white adipose mass is_a: VT:0010044 ! intramuscular adipose amount created_by: caripark creation_date: 2008-11-11T02:54:44Z [Term] id: VT:1000518 name: adipose fatty acid trans-11-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a monounsaturated fatty acid (C18H34O2), with a carbon-carbon double bond at C-11, present in a sample of fat." [PMID:11048916, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose 7-octadecenoic acid concentration" EXACT [] synonym: "adipose fatty acid trans-11-C18:1 content" RELATED [] synonym: "adipose fatty acid trans-11-C18:1 percentage" RELATED [] synonym: "adipose vaccenic acid concentration" EXACT [] is_a: VT:0005285 ! adipose unsaturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000519 name: adipose fatty acid C20:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an unsaturated fatty acid (C20H36O2), with two carbon-carbon double bonds, present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose eicosadienoic acid concentration" EXACT [] synonym: "adipose fatty acid C20:2 content" RELATED [] synonym: "adipose fatty acid C20:2 percentage" RELATED [] is_a: VT:0005285 ! adipose unsaturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000520 name: adipose fatty acid cis-11-C20:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a monounsaturated fatty acid (C20H38O2), with a carbon-carbon double bond at C-11, present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid cis-11-C20:1 content" RELATED [] synonym: "adipose fatty acid cis-11-C20:1 percentage" RELATED [] synonym: "eicosenoic acid percentage" RELATED [] is_a: VT:0005285 ! adipose unsaturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000521 name: adipose fatty acid C17:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C17H34O2) present in a sample of fat." [PMID:17705816, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid C17:0 content" RELATED [] synonym: "adipose fatty acid C17:0 percentage" RELATED [] synonym: "adipose heptadecanoic acid concentration" EXACT [] synonym: "adipose margaric acid concentration" EXACT [] synonym: "heptadecanoic acid percentage" RELATED [] is_a: VT:0005286 ! adipose saturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000522 name: adipose fatty acid cis-9,cis-12-C18:2 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an omega-6 unsaturated fatty acid (C18H32O2), with two carbon-carbon double bonds, present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid cis-9,cis-12-C18:2 content" RELATED [] synonym: "adipose fatty acid cis-9,cis-12-C18:2 percentage" RELATED [] synonym: "adipose linoleic acid concentration" EXACT [] synonym: "linoleic acid percentage" RELATED [] is_a: VT:0005285 ! adipose unsaturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000523 name: adipose fatty acid C18:3 n-3 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an omega-3, polyunsaturated fatty acid (C18H30O2), with three carbon-carbon double bonds, present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid C18:3 n-3 content" RELATED [] synonym: "adipose fatty acid C18:3 n-3 percentage" RELATED [] synonym: "adipose linolenic acid concentration" EXACT [] synonym: "alpha-linolenic acid percentage" RELATED [] synonym: "linolenic acid percentage" RELATED [] is_a: VT:0005285 ! adipose unsaturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000524 name: adipose fatty acid C14:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C14H28O2) present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid C14:0 content" RELATED [] synonym: "adipose fatty acid C14:0 percentage" RELATED [] synonym: "adipose myristic acid concentration" EXACT [] synonym: "adipose tetradecanoic acid concentration" EXACT [] synonym: "myristic acid percentage" RELATED [] synonym: "tetradecanoic acid percentage" RELATED [] is_a: VT:0005286 ! adipose saturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000525 name: adipose fatty acid cis-9-C18:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a monounsaturated, omega-9 fatty acid (C18H34O2), present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid cis-9-C18:1 content" RELATED [] synonym: "adipose fatty acid cis-9-C18:1 percentage" RELATED [] synonym: "adipose oleic acid concentration" EXACT [] synonym: "oleic acid percentage" RELATED [] is_a: VT:0005285 ! adipose unsaturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000526 name: adipose fatty acid C16:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C16H32O2) present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid C16:0 content" RELATED [] synonym: "adipose fatty acid C16:0 percentage" RELATED [] synonym: "adipose hexadecanoic acid concentration" EXACT [] synonym: "adipose palmitic acid concentration" EXACT [] synonym: "hexadecanoic acid percentage" RELATED [] synonym: "palmitic acid percentage" RELATED [] is_a: VT:0005286 ! adipose saturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000527 name: adipose fatty acid cis-9-C16:1 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of an omega-7, monounsaturated fatty acid (C16H30O2) present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid cis-9-C16:1 content" RELATED [] synonym: "adipose fatty acid cis-9-C16:1 percentage" RELATED [] synonym: "adipose palmitoleic acid concentration" EXACT [] synonym: "palmitoleic acid percentage" RELATED [] is_a: VT:0005285 ! adipose unsaturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000528 name: adipose fatty acid C18:0 amount namespace: Trait.ontology def: "The proportion, quantity, or volume of a saturated fatty acid (C18H36O2) present in a sample of fat." [PMID:19133937, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "adipose fatty acid C18:0 content" RELATED [] synonym: "adipose fatty acid C18:0 percentage" RELATED [] synonym: "adipose octadecanoic acid concentration" EXACT [] synonym: "adipose stearic acid concentration" EXACT [] synonym: "stearic acid percentage" RELATED [] is_a: VT:0005286 ! adipose saturated fatty acid amount created_by: caripark creation_date: 2008-11-11T03:26:41Z [Term] id: VT:1000574 name: longissimus dorsi muscle area namespace: Trait.ontology def: "The two-dimensional extent of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis." [ISBN:0-914294-08-3 "Gray's Anatomy"] synonym: "loin eye area" EXACT [] synonym: "loin muscle area" EXACT [] synonym: "longissimus dorsi muscle area" RELATED [] synonym: "longissimus thoracis area" EXACT [] synonym: "rib eye area" EXACT [] is_a: VT:0010117 ! longissimus dorsi size trait created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: VT:1000575 name: longissimus dorsi muscle thickness namespace: Trait.ontology def: "The distance between the surfaces of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis." [ISBN:0-914294-08-3 "Gray's Anatomy"] synonym: "eye muscle depth" RELATED [] synonym: "loin height" RELATED [] synonym: "loin muscle depth" RELATED [] synonym: "longissimus dorsi muscle depth" EXACT [] synonym: "longissimus dorsi muscle width" EXACT [] synonym: "longissimus thoracis depth" RELATED [] is_a: VT:0010117 ! longissimus dorsi size trait created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: VT:1000578 name: longissimus dorsi length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis." [ISBN:0-914294-08-3 "Gray's Anatomy"] synonym: "loin length" EXACT [] synonym: "longissimus muscle length" EXACT [] synonym: "longissimus thoracis length" EXACT [] is_a: VT:0010117 ! longissimus dorsi size trait created_by: caripark creation_date: 2008-11-11T03:57:04Z [Term] id: VT:1000606 name: skeletal muscle myosin heavy chain type I amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the type I isoform, predominant in slow-twitch fibers, of the most abundant protein in skeletal muscle." [PMID:10998639, PMID:8307894, VTO:CP "Cari Park, Iowa State University Curator"] synonym: "fiber type 1 percentage" RELATED [] xref: ATOL:0001665 is_a: VT:1000746 ! skeletal muscle myosin isoform amount created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: VT:1000607 name: skeletal muscle myosin heavy chain type IIa amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the type IIa isoform, found in greater amounts in fast fibers, of the most abundant protein in skeletal muscle." [PMID:10998639, PMID:8307894, VTO:CP "Cari Park, Iowa State University Curator"] xref: ATOL:0001666 is_a: VT:1000746 ! skeletal muscle myosin isoform amount created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: VT:1000612 name: type IIb muscle fiber quantity namespace: Trait.ontology def: "The proportion or number of type IIb, fast glycolytic fibers in skeletal muscle; these white fibers are greater in diameter than red fibers, have less myoglobin, sarcoplasm, and mitochondria, and contract more quickly." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "type IIb muscle fiber number" RELATED [] synonym: "type IIb myofiber abundance" EXACT [] synonym: "white myofiber abundance" EXACT [] xref: ATOL:0001669 is_a: VT:1000743 ! skeletal muscle fiber quantity created_by: caripark creation_date: 2008-11-11T04:15:56Z [Term] id: VT:1000637 name: functional nipple quantity namespace: Trait.ontology def: "The proportion or number of nipples capable of secreting milk." [RGD:MS] synonym: "functional nipple number" EXACT [] synonym: "functional teat number" RELATED [] xref: ATOL:0001672 is_a: VT:1000206 ! nipple quantity created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: VT:1000639 name: uterine horn length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the upper right or left portion of the uterus to which the uterine tube is connected." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0001674 is_a: VT:0002637 ! uterus size trait is_a: VT:0010394 ! uterine horn morphology trait created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: VT:1000640 name: uterine horn mass namespace: Trait.ontology def: "The matter of the upper right or left portion of the hollow muscular organ where the embryo/fetus develops to which the uterine tube is connected." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "uterine horn weight" RELATED [] xref: ATOL:0001675 is_a: VT:0002637 ! uterus size trait is_a: VT:0010394 ! uterine horn morphology trait created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: VT:1000641 name: ovary mass namespace: Trait.ontology def: "The amount of matter in the female reproductive gland containing the germ cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0001676 is_a: VT:0001127 ! ovary size trait created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: VT:1000642 name: uterus length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the hollow muscular organ where the embryo/fetus develops." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "uterine length" EXACT [] xref: ATOL:0001677 is_a: VT:0002637 ! uterus size trait created_by: caripark creation_date: 2008-11-11T04:29:40Z [Term] id: VT:1000643 name: sperm production trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the production of mature male germ cells." [Dorland:Dorlands Illustrated Medical Dictionary 31st Ed] is_a: VT:0001156 ! spermatogenesis trait created_by: caripark creation_date: 2008-11-11T04:30:44Z [Term] id: VT:1000644 name: testes mass namespace: Trait.ontology def: "The amount of matter in the male reproductive glands." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "testes weight" RELATED [] xref: ATOL:0001679 is_a: VT:0001148 ! testes size trait created_by: caripark creation_date: 2008-11-11T04:30:44Z [Term] id: VT:1000653 name: lactation duration namespace: Trait.ontology def: "The period of time over which milk is produced from the mammary gland." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "lactation length" EXACT [] xref: ATOL:0001682 is_a: VT:0001882 ! lactation trait created_by: caripark creation_date: 2008-11-11T04:35:38Z [Term] id: VT:1000664 name: feather morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the surface covering of birds, made of keratin." [http://www.britannica.com] is_a: VT:0010007 ! skin adnexa morphology trait created_by: caripark creation_date: 2009-03-10T01:08:34Z [Term] id: VT:1000666 name: femur width namespace: Trait.ontology def: "The distance from side to side of the long bone of the thigh." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:1000369 ! femur size trait created_by: caripark creation_date: 2009-03-25T09:14:54Z [Term] id: VT:1000667 name: gizzard morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the secondary, muscular stomach in some vertebrates used for grinding up food." [VTO:CP "Cari Park, Iowa State University Curator"] xref: ATOL:0001683 is_a: VT:0000462 ! gastrointestinal system morphology trait created_by: caripark creation_date: 2009-03-30T10:31:57Z [Term] id: VT:1000670 name: blood cortisol amount namespace: Trait.ontology def: "The proportion, quantity, or volume in whole blood, serum, or plasma of a steroid hormone secreted by the adrenal cortex which acts as an anti-inflammatory agent." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "blood cortisol level" RELATED [] synonym: "circulating cortisol level" RELATED [] synonym: "circulating hydrocortisone level" RELATED [] is_a: VT:0003366 ! blood glucocorticoid amount created_by: caripark creation_date: 2009-03-30T02:24:52Z [Term] id: VT:1000683 name: total heart ventricle size trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the physical magnitude of both of the lower chambers of the heart." [VTO:CP "Cari Park, Iowa State University Curator"] is_obsolete: true created_by: caripark creation_date: 2009-04-01T03:44:26Z [Term] id: VT:1000684 name: total heart ventricle mass namespace: Trait.ontology def: "The total amount of matter in both of the lower chambers of the heart." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0010298 ! heart ventricle size trait created_by: caripark creation_date: 2009-04-01T03:45:39Z [Term] id: VT:1000685 name: muscle pH namespace: Trait.ontology def: "The relative acidity or alkalinity in the muscle, as measured by the concentration of hydrogen ion." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0004043 ! pH regulation trait created_by: caripark creation_date: 2009-04-01T03:49:05Z [Term] id: VT:1000686 name: paw/hand/foot/hoof mass namespace: Trait.ontology def: "The amount of matter in the pedal or prehensile extremity of vertebrates." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait created_by: caripark creation_date: 2009-04-01T04:28:54Z [Term] id: VT:1000687 name: forelimb mass namespace: Trait.ontology def: "The amount of matter in the anterior/superior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] synonym: "shoulder mass trait" NARROW [] synonym: "wing mass trait" NARROW [] is_a: VT:0000550 ! forelimb morphology trait created_by: caripark creation_date: 2009-04-02T08:23:43Z [Term] id: VT:1000688 name: metatarsus mass namespace: Trait.ontology def: "The amount of matter in any of the bones of the lower/hindlimbs that articulate proximally with the tarsus and distally with the phalanges." [ISBN:978-0028454405 "Greene, EC Anatomy of the Rat"] synonym: "metatarsal bone weight" RELATED [] synonym: "metatarsus weight" RELATED [] synonym: "shank weight" RELATED [] is_a: VT:0003072 ! metatarsus morphology trait created_by: caripark creation_date: 2009-04-02T11:09:39Z [Term] id: VT:1000689 name: hindlimb mass namespace: Trait.ontology def: "The amount of matter in the posterior/inferior jointed appendages used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition"] is_a: VT:0000556 ! hindlimb morphology trait created_by: caripark creation_date: 2009-04-02T11:41:35Z [Term] id: VT:1000694 name: muscle glycogen homeostasis trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the state of equilibrium in muscle with respect to this readily converted carbohydrate reserve, found in most tissues, especially liver and muscle." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0002106 ! muscular system physiology trait created_by: caripark creation_date: 2009-04-03T09:59:55Z [Term] id: VT:1000702 name: udder cleft morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the upward extension of the suspensory ligament separating the two halves of the udder." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "depth of mammary gland fissure" RELATED [] is_a: VT:1000067 ! udder morphology trait created_by: caripark creation_date: 2009-04-23T08:43:06Z [Term] id: VT:1000703 name: udder height, floor to tarsal joint namespace: Trait.ontology def: "The vertical dimension between the udder floor and tarsal joint (point of the hock), viewed from the side." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "udder depth" EXACT [] is_a: VT:0100035 ! udder size trait created_by: caripark creation_date: 2009-04-23T08:43:06Z [Term] id: VT:1000704 name: mammary gland length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the milk-producing glands in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", VTO:INRA "INRA curator"] synonym: "mammary gland height" RELATED [] xref: ATOL:0001685 is_a: VT:0010002 ! mammary gland size trait created_by: caripark creation_date: 2009-04-23T08:43:06Z [Term] id: VT:1000705 name: mammary gland width namespace: Trait.ontology def: "The distance from side to side of the milk-producing glands in female mammals, consisting of lobes containing clusters of alveoli with a system of ducts to convey the milk to an external nipple or teat." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", VTO:INRA "INRA curator"] synonym: "rear udder width" RELATED [] synonym: "udder width" RELATED [] is_a: VT:0010002 ! mammary gland size trait created_by: caripark creation_date: 2009-04-23T08:43:06Z [Term] id: VT:1000706 name: longissimus dorsi morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color or pattern of the muscle of the back which is the intermediate and largest of the continuations of the Sacrospinalis." [ISBN:1587341026 "Gray's Anatomy"] synonym: "longissimus thoracis morphology trait" EXACT [] is_a: VT:0004248 ! epaxial muscle morphology trait created_by: caripark creation_date: 2009-04-23T01:15:57Z [Term] id: VT:1000711 name: abdominal fat pad mass namespace: Trait.ontology def: "The amount of matter in the encapsulated adipose tissue in the cavity bounded by the abdominal walls, the diaphragm, and the pelvis." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MS:RGD] synonym: "abdominal fat pad weight" RELATED [] is_a: VT:0000010 ! abdominal fat pad morphology trait created_by: caripark creation_date: 2009-04-29T03:54:23Z [Term] id: VT:1000712 name: skeletal muscle mass namespace: Trait.ontology def: "The amount of matter in one or more of the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "skeletal muscle weight" RELATED [] is_a: VT:0003398 ! skeletal muscle size trait created_by: caripark creation_date: 2009-05-01T04:13:32Z [Term] id: VT:1000713 name: skeletal muscle myosin heavy chain type IIb amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the type IIb isoform, found in the fastest fibers, of the most abundant protein in skeletal muscle." [PMID:10998639, PMID:8307894, RGD:MS] xref: ATOL:0001686 is_a: VT:1000746 ! skeletal muscle myosin isoform amount created_by: caripark creation_date: 2009-05-01T05:21:37Z [Term] id: VT:1000720 name: nonfunctional nipple quantity namespace: Trait.ontology def: "The proportion or number of nipples incapable of secreting milk." [RGD:MS] synonym: "nonfunctional nipple number" EXACT [] synonym: "nonfunctional teat number" RELATED [] xref: ATOL:0001687 is_a: VT:1000206 ! nipple quantity created_by: caripark creation_date: 2009-05-06T09:39:43Z [Term] id: VT:1000726 name: back conformation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the arrangement of an organism's back, neck, and area between the shoulder blades, sometimes known as the withers in some animals, as viewed from behind." [Saunders:Saunders Veterinary Dictionary] synonym: "dairy form" EXACT [] is_a: VT:1000000 ! body conformation trait created_by: caripark creation_date: 2009-05-06T03:13:00Z [Term] id: VT:1000731 name: chest width namespace: Trait.ontology def: "The distance from side to side of the chest, viewed from the front; typically measured at the widest point above the forelimbs." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "strength" RELATED [] is_a: VT:0004134 ! thorax morphology trait created_by: caripark creation_date: 2009-05-07T12:48:20Z [Term] id: VT:1000732 name: chest depth namespace: Trait.ontology def: "The dorsal-ventral dimension of the chest, measured directly behind the forelimbs." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0004134 ! thorax morphology trait created_by: caripark creation_date: 2009-05-07T12:59:41Z [Term] id: VT:1000733 name: heel depth namespace: Trait.ontology def: "The vertical distance from the ground to the hairline at the back of the hoof." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait created_by: caripark creation_date: 2009-05-07T01:17:19Z [Term] id: VT:1000734 name: hoof diagonal namespace: Trait.ontology def: "The distance from the tip of the hoof to the hairline at the back of the hoof." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "foot diagonal" EXACT [] is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait created_by: caripark creation_date: 2009-05-07T01:17:19Z [Term] id: VT:1000735 name: hoof angle namespace: Trait.ontology def: "The angle at which the hoof wall meets the ground." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "foot angle" EXACT [] is_a: VT:0004271 ! paw/hand/foot/hoof morphology trait created_by: caripark creation_date: 2009-05-07T01:17:19Z [Term] id: VT:1000736 name: temperament trait namespace: Trait.ontology def: "any measurable or observable characteristic related to the general attitude or characteristic reactions of an organism exhibited toward another organism" [VTO:CP] subset: slim_cattle is_a: VT:0015008 ! total fat pad mass created_by: caripark creation_date: 2009-05-07T01:31:27Z [Term] id: VT:1000737 name: hind leg set namespace: Trait.ontology def: "The squareness of the hind legs in relation to the body; may be assessed from the side or from behind." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "rear leg set" EXACT [] is_a: VT:0000556 ! hindlimb morphology trait created_by: caripark creation_date: 2009-05-07T01:44:48Z [Term] id: VT:1000738 name: limb conformation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the assessment of the overall structure and proportions of the jointed appendages of an animal, used for locomotion or grasping." [ISBN:978-0440237013 "American Heritage Dictionary, 4th Edition", Saunders:Saunders Veterinary Dictionary] synonym: "conformation of limbs" EXACT [] is_a: VT:0002109 ! limb morphology trait is_a: VT:1000000 ! body conformation trait created_by: caripark creation_date: 2009-05-07T01:53:41Z [Term] id: VT:1000739 name: rump morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the hindquarters." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "hindquarter morphology trait" EXACT [] is_a: VT:0015060 ! rump trait created_by: caripark creation_date: 2009-05-07T02:23:12Z [Term] id: VT:1000740 name: rump width namespace: Trait.ontology def: "The distance from side to side between the caudal protrusions of the pelvis, viewed from behind." [VTO:CP "Cari Park, Iowa State University Curator"] synonym: "thurl width" EXACT [] is_a: VT:1000739 ! rump morphology trait created_by: caripark creation_date: 2009-05-07T02:27:08Z [Term] id: VT:1000741 name: rump angle namespace: Trait.ontology def: "The slope of the topline of the rump, between the cranial and caudal protrusions of the pelvic bone, viewed from the side." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:1000739 ! rump morphology trait created_by: caripark creation_date: 2009-05-07T02:27:08Z [Term] id: VT:1000742 name: sarcomere length namespace: Trait.ontology def: "The distance from point to point along the longest axis of the segment of a myofibril between two Z lines." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0001690 is_a: VT:0004090 ! sarcomere morphology trait created_by: caripark creation_date: 2009-05-07T02:45:53Z [Term] id: VT:1000743 name: skeletal muscle fiber quantity namespace: Trait.ontology def: "The proportion or number of skeletal muscle fibers, the large multinucleated cells that make up the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "skeletal muscle cell number" RELATED [] synonym: "skeletal muscle fiber number" RELATED [] xref: ATOL:0001691 is_a: VT:0003084 ! skeletal muscle fiber morphology trait is_a: VT:0003398 ! skeletal muscle size trait is_a: VT:0010119 ! skeletal muscle cellular composition trait created_by: caripark creation_date: 2009-05-07T03:19:34Z [Term] id: VT:1000746 name: skeletal muscle myosin isoform amount namespace: Trait.ontology def: "The proportion, quantity, or volume of any of several forms of the thick filament protein in any of the striated muscles connected at either or both extremities with the bony framework of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:MS] is_a: VT:0000759 ! skeletal muscle morphology trait is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2009-05-07T03:52:39Z [Term] id: VT:1000747 name: type I muscle fiber quantity namespace: Trait.ontology def: "The proportion or number of type I, slow oxidative fibers in skeletal muscle; these red fibers are rich in sarcoplasm, myoglobin, and mitochondria and contract more slowly than white fibers." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "red fiber abundance" EXACT [] synonym: "type I muscle fiber number" RELATED [] synonym: "type I myofiber abundance" EXACT [] xref: ATOL:0001693 is_a: VT:1000743 ! skeletal muscle fiber quantity created_by: caripark creation_date: 2009-05-07T07:22:41Z [Term] id: VT:1000748 name: type IIa muscle fiber quantity namespace: Trait.ontology def: "The proportion or number of type IIa, fast oxidative fibers in skeletal muscle; have an admixture of glycolytic and oxidative enzymes and an intermediate twitch time." [http://www.wheelessonline.com "Wheeless' Textbook of Orthopaedics", VTO:CP "Cari Park, Iowa State University Curator"] synonym: "type IIa muscle fiber number" RELATED [] synonym: "type IIa myofiber abundance" EXACT [] xref: ATOL:0001694 is_a: VT:1000743 ! skeletal muscle fiber quantity created_by: caripark creation_date: 2009-05-07T07:22:41Z [Term] id: VT:1000761 name: muscle nitrogen amount namespace: Trait.ontology def: "The proportion, quantity, or volume of this element present in the tissue composed of contractile cells or fibers that effects movement." [ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] is_a: VT:0010021 ! muscle molecular composition trait created_by: caripark creation_date: 2009-05-20T10:58:25Z [Term] id: VT:1000764 name: muscle myoglobin amount namespace: Trait.ontology def: "The proportion, quantity, or volume of the heme-containing, oxygen-carrying and storage protein in the contractile tissue that effects movement." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", ISBN:0-8036-1207-9 "Taber's Cyclopedic Medical Dictionary"] synonym: "meat myoglobin concentration" RELATED [] is_a: VT:1000433 ! muscle protein amount created_by: caripark creation_date: 2009-06-15T09:44:56Z [Term] id: VT:1000775 name: integumentary system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the system consisting of the skin and its derivatives." [MeSH:D034582 "integumentary system"] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-06-26T11:54:35Z [Term] id: VT:1000776 name: alimentary system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the system dedicated to the mechanical, chemical, and enzymatic processing of food." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-06-26T11:54:35Z [Term] id: VT:1000777 name: urinary system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the organs involved in the production or excretion of urine or the urine produced." [RGD:MS] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-06-26T11:54:35Z [Term] id: VT:1000781 name: nervous/sensory system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the system responsible for receiving and processing information about an organism's environment and controlling behavior." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-06-26T11:54:35Z [Term] id: VT:1000782 name: endocrine/exocrine system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the system of glands that secrete hormones and other substances." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-06-26T11:54:35Z [Term] id: VT:1000783 name: immune system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the organs or cells associated with the body's defense against foreign organisms or substances and aberrant native cells." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] xref: ATOL:0000932 is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-06-26T11:54:35Z [Term] id: VT:1000784 name: circulatory system trait namespace: Trait.ontology def: "Any measurable or observable characteristic of the system that moves extracellular fluids to and from tissues." [VTO:CP "Cari Park, Iowa State University Curator"] is_a: VT:0015074 ! organ system trait created_by: caripark creation_date: 2009-06-26T11:54:35Z [Term] id: VT:2000000 name: arterial blood pressure trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood pressure in the arteries." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000183 ! blood pressure trait [Term] id: VT:2000001 name: capillary blood pressure trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood pressure in the capillaries." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000183 ! blood pressure trait [Term] id: VT:2000002 name: venous blood pressure trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the blood pressure in the veins." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000183 ! blood pressure trait [Term] id: VT:2000003 name: regional blood pressure trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the blood pressure in a specific region of the body, tissue, or organ." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000183 ! blood pressure trait [Term] id: VT:2000004 name: coronary blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood flow in the heart." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000255 ! regional blood flow trait [Term] id: VT:2000005 name: cerebral blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood flow in the brain." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000255 ! regional blood flow trait [Term] id: VT:2000006 name: renal blood flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to blood flow in the kidneys." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000255 ! regional blood flow trait [Term] id: VT:2000007 name: pulmonary blood flow trait namespace: Trait.ontology def: "OBSOLETE. Any measurable or observable characteristic related to the blood flow in the lungs.\nconsider: VT:0002295" [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_obsolete: true [Term] id: VT:2000008 name: lymph flow trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the movement of lymph through the lymph vessels." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000174 ! lymph physiology trait [Term] id: VT:2000009 name: heart pumping trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of the heart to pump blood through its various chambers and out into the circulatory system." [RGD:MS] synonym: "cardiac capacities" EXACT [] is_a: VT:0010301 ! heart physiology trait [Term] id: VT:2000016 name: venous return amount namespace: Trait.ontology def: "The proportion, quantity, or volume of blood that enters the right heart from the vena cava." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000182 ! blood flow trait [Term] id: VT:2000017 name: heart electrical impulse conduction trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the conduction of an electrical impulse through the heart." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000231 ! heart excitatory physiology trait [Term] id: VT:2000018 name: heart muscle contractility trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of cardiac muscle fibers to shorten." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] synonym: "cardiac muscle contraction" EXACT [] synonym: "heart muscle contraction" EXACT [] is_a: VT:0010110 ! heart muscle physiology trait [Term] id: VT:2000020 name: heart muscle relaxation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the ability of striated, involuntary muscle comprising the myocardium to lengthen following contraction." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] synonym: "cardiac muscle relaxation" EXACT [] is_a: VT:0010110 ! heart muscle physiology trait [Term] id: VT:2000021 name: heart muscle contractile force namespace: Trait.ontology def: "The force generated by contraction of the striated, involuntary muscle comprising the myocardium." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] synonym: "cardiac muscle contractile force" EXACT [] is_a: VT:2000018 ! heart muscle contractility trait [Term] id: VT:3000000 name: platelet adhesion trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of platelets sticking to exposed extracellular matrix proteins." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000260 ! hemostasis trait [Term] id: VT:3000001 name: platelet activation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of stimulating platelets to release substances that promote platelet adhesion and blood clotting." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000260 ! hemostasis trait [Term] id: VT:3000002 name: platelet aggregation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process of platelets sticking to each other." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000260 ! hemostasis trait [Term] id: VT:3000003 name: fibrin formation trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the process whereby prothrombin is activated to thrombin which acts to convert fibrinogen to fibrin, allowing for formation of a fibrin clot." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000260 ! hemostasis trait [Term] id: VT:3000004 name: blood viscosity trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the resistance of two layers of blood to sliding against each other." [RGD:dhm "Diane Munzenmaier, Rat Genome Database"] is_a: VT:0000171 ! blood physiology trait [Term] id: VT:4000007 name: coat/hair physiology trait namespace: Trait.ontology def: "Any measurable characteristic related to the function of or processes in the fine, keratinized filamentous growths arising from the epidermis of mammals." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:dhm "Diane Munzenmaier, Medical College of Wisconsin"] is_a: VT:0100019 ! integumentary system physiology trait created_by: dmunzenmaier creation_date: 2010-01-21T08:14:23Z [Term] id: VT:4000009 name: skin layer morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the individual layers of the membranous protective covering of the body." [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", RGD:dhm "Diane Munzenmaier, Medical College of Wisconsin"] is_a: VT:0002096 ! skin morphology trait created_by: dmunzenmaier creation_date: 2010-01-21T08:22:22Z [Term] id: VT:4000011 name: endocrine pancreas morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of the Islets of Langerhans of the pancreas which secrete insulin and glucagon into the bloodstream." [RGD:dhm "Diane Munzenmaier, Medical College of Wisconsin"] is_a: VT:0001944 ! pancreas morphology trait created_by: dmunzenmaier creation_date: 2010-02-05T08:13:19Z [Term] id: VT:4000012 name: mucous gland morphology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the glands that secret mucous." [RGD:dhm "Diane Munzenmaier, Medical College of Wisconsin"] is_a: VT:0002163 ! gland morphology trait created_by: dmunzenmaier creation_date: 2010-02-05T08:29:33Z [Term] id: VT:4000013 name: neuroendocrine gland physiology trait namespace: Trait.ontology def: "Any measurable or observable characteristic related to the function of or processes in the organized aggregations of cells that release hormones in response to neural stimuli." [RGD:dhm "Diane Munzenmaier, Medical College of Wisconsin"] is_a: VT:0002164 ! gland physiology trait created_by: dmunzenmaier creation_date: 2010-02-05T09:02:56Z [Typedef] id: is_a name: is a namespace: Product.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig [Typedef] id: part_of name: part_of namespace: Product.ontology subset: slim_cattle subset: slim_chkn subset: slim_pig is_transitive: true