Missions
 
Team
 
Collaborations
 
Projects
 
Abstracts
 
Papers
National Animal Genome Research Program
Bioinformatics Coordination Program
Presented Abstracts/Posters
( 2003 — 2022)
  1. Sabrina Toro, Nicolas Matentzoglu, Kathleen R Mullen, Nicole Vasilevsky, Halie M Rando, Melissa Haendel, Christopher J Mungall, Zhi-Liang Hu, Gregoire Leroy, Imke Tammen, Frank W Nicholas. (2022). Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO). International Conference on Biomedical Ontology, 2022.
  2. Hu, Zhi-Liang, Carissa Park, James M. Reecy (2022). The Animal QTLdb and CorrDB – 2021 updates. Plant & Animal Genome XXIX Conference, January 8-12, 2022. Town & Country Convention Center, San Diego, CA.
  3. ImkeTammen, Nicole Vasilevsky, Carissa A. Park, Zhi-Liang Hu, Melissa Haendel, Frank W. Nicholas (2021). Online Mendelian Inheritance in Animals (OMIA): standardised vocabularies for breeds and traits. ISAG 2021 Virtual Conference, Kuly 26-30, 2021.
  4. Hu, Zhi-Liang, Carissa Park, James M. Reecy (2020). An Update on Database Growth and Improvements of Animal QTLdb and CorrDB. Plant & Animal Genomes XXVII Conference, January 11-15, 2020. Town & Country Convention Center, San Diego, CA.
  5. Hamid Beiki, James E. Koltes, Hu, Zhi-Liang and James M. Reecy (2020). Analysis of Divergent Transcription Factors across Different Cattle Tissues Reveals Their Interesting Biological Functions. Plant & Animal Genomes XXVII Conference, January 11-15, 2020. Town & Country Convention Center, San Diego, CA.
  6. Hu, Zhi-Liang, Carissa Park, James M. Reecy (2019). Implementation of a new data enrichment analysis tool in the Animal QTL Database. Plant & Animal Genomes XXVII Conference, January 11-16, 2019. Town & Country Convention Center, San Diego, CA.
  7. Hu, Zhi-Liang, Carissa Park, James M. Reecy (2018). Towards Making the "Big Data" Useful - Developing Databases in Terms of Data Re-Synthesis for the Ease of Use of the Big Data in the Future. Plant & Animal Genomes XXVI Conference, January 13-17, 2018. Town & Country Convention Center, San Diego, CA.
  8. Hu, Zhi-Liang, Carissa Park, James M. Reecy (2018). Animal QTLdb and CorrDB updates: integrative development of genetics/genomics databases and tools to meet new challenges. Plant & Animal Genomes XXVI Conference, January 13-17, 2018. Town & Country Convention Center, San Diego, CA.
  9. Hu, Zhi-Liang, Carissa Park, James M. Reecy (2016). Animal QTLdb: Towards a Comprehensive Database and Tool Set for Livestock Genome Research. Plant & Animal Genomes XXIV Conference, January 10-14, 2015. Town & Country Convention Center, San Diego, CA.
  10. Hu, Zhi-Liang, Carissa A. Park, James E. Koltes, Eric Fritz-Waters and James M. Reecy (2015). An Application Programming Interface (API) for Programmable Access to Animal QTLdb. Plant & Animal Genomes XXIII Conference, January 10-14, 2015. Town & Country Convention Center, San Diego, CA.
  11. Hu, Zhi-Liang, John R. Garbe, James M. Reecy, Max F. Rothschild, Yang Da, Jack C.M. Dekkers (2014). Linkage analysis to improve the swine genome assembly. 34th International Society of Animal Genetics (ISAG), July 28-August 1, 2014, Xi'an, China.
  12. Hu, Zhi-Liang, James E. Koltes, Eric Fritz-Waters and James M. Reecy (2014). VCF Miner: A Platform and Tools for Collaborative Information Mining from Next-Generation Sequence Variant Data. Plant & Animal Genomes XXII Conference, January 11-15, 2014. Town & Country Convention Center, San Diego, CA.
  13. Hu, Zhi-Liang and James M. Reecy (2013). Pig Genome Database: A Networked Information Hub to Facilitate Comprehensive Genetic Analysis. PAG-Asia, March 15-17, 2013. Singapore.
  14. James M. Reecy, Hu, Zhi-Liang, Carissa Park, Eric Fritz (2013). NRSP-8 Animal Bioinformatics 2012: Update. Plant & Animal Genomes XXI Conference, January 12-16, 2013. Town & Country Convention Center, San Diego, CA.
  15. Hu, Zhi-Liang, Dinesh Kumar, and James Reecy (2013). CorrDB: A Livestock Animal Genetic/Phenotypic Trait Correlation Database. Plant & Animal Genomes XXI Conference, January 12-16, 2013. Town & Country Convention Center, San Diego, CA.
  16. Hu, Zhi-Liang and James M. Reecy, (2012). Databases for animal genome research: the needs, the trends, and the potentials - a case study on development of the pig genome database. International Society for Animal Genetics (ISAG), July 13-20, 2012, Cairns, Australia.
  17. Hu, Zhi-Liang, Oliver Couture, Eric Fritz, Carissa Park, Christopher K. Tuggle, and James Reecy (2012). Pig Genome Database: A Central Pig Genome Information Hub to Support the Community Activities. Plant & Animal Genomes XX Conference, January 14-19, 2012. Town & Country Convention Center, San Diego, CA.
  18. Carissa Park, Susan M. Bello, Cynthia Smith, Hu, Zhi-Liang, Diane Munzenmaier, Mary Shimoyama, Janan Eppig, and James Reecy (2012). The Vertebrate Trait Ontology: A Controlled Vocabulary to Facilitate Cross-species Comparison of Trait Data. Plant & Animal Genomes XX Conference, January 14-19, 2012. Town & Country Convention Center, San Diego, CA.
  19. Hu, Zhi-Liang, Cari Park and James M. Reecy (2012). Animal QTLdb Extension (V): Addition of New Data Types and Functions. Plant & Animal Genomes XX Conference, January 14-19, 2012. Town & Country Convention Center, San Diego, CA.
  20. Christopher K Tuggle, Claire Rogel-Gaillard, Jane Loveland, Hirohide Uenishi, Harry Dawson, Joan Lunney, Yongming Sang, Shuhong Zhao, Elisabetta Giuffra, Sara Botti, James Reecy, Jennifer Harrow, Tom Freeman, Alan L Archibald, Michael Murtaugh, David Hume, Takeya Morozumi, Hiroki Shinkai, Bertrand Bedhom, Frank Blecha, Guolong Zhang, Katherine Mann, Jie Zhang, Celine Chen, Hu, Zhi-Liang, Ryan Cheng, Tinghua Huang, Yasiara Rodriguez, Anna Anselmo, Bouabid Badaoui, John Schwartz, Ronan Kapetanovic, Dario Beraldi, and the Swine Genome Sequencing Consortium (2011). Community annotation of immunity-related genes in the pig genome. The 4th International Symposium on Animal Functional Genomics (ISAFG), Oct. 10-12, 2011, Dublin, Ireland.
  21. Hu, Zhi-Liang, Xiao-lin Wu, Cari Park and James M. Reecy (2011). Extension of Animal QTLdb (IV): QTL Meta-Analysis on the Fly. Plant & Animal Genomes XVIII Conference, January 14-19, 2011. Town & Country Convention Center, San Diego, CA.
  22. Xiao-Lin Wu, Daniel Gianola1, Hu, Zhi-Liang, James M. Reecy (2011). Meta-Analysis of QTL Mapping Experiments Using A Non-Parametric Model with A Dirichlet Process Prior. Plant & Animal Genomes XVIII Conference, January 14-19, 2011. Town & Country Convention Center, San Diego, CA.
  23. James E Koltes, Steven G Davis, Hu, Zhi-Liang, Mary Shimoyama, Melinda Dwinell, Anne E Kwitek, James M Reecy (2011). VCmap: A Comparative Genomics Viewer and Database Designed to Facilitate Genomic Discovery. Plant & Animal Genomes XVIII Conference, January 14-19, 2011. Town & Country Convention Center, San Diego, CA.
  24. Jianguo Lu, Eric Peatman, Qing Yang, Shaolin Wang, Hu, Zhi-Liang, James Reccy, Huseyin Kucuktas, Zhanjiang Liu (2011). Development Of cBARBEL, A Catfish Genome Database. Plant & Animal Genomes XIX Conference, January 15-19, 2011, Town & Country Convention Center, San Diego, CA.
  25. S.O.Peters, K.Kizilkaya, D.J.Garrick, R.L.Fernando, J.M.Reecy, Z-L. Hu, R.L. Weaber, G.A. Silver1, and M. G. Thomas (2010). Bayesian QTL inference and gene identification for first service conception rate in Brangus heifers. ASAS Annual Meeting, July 11-15, 2010. Denver, CO.
  26. Anne Kwitek, Steve Davis, Mary Shimoyama, Hu, Zhi-Liang, Cari Park, Diane Munzenmaier, Mindy Dwinell, James Reecy (2010). Development of Resources To Facilitate Cross-Species Comparisions. Plant & Animal Genomes XVIII Conference, January 9-13, 2010, Town & Country Convention Center, San Diego, CA.
  27. Hu, Zhi-Liang, Rex Fernando, Dorian Garrick, James M. Reecy (2010). SNPlotz: a generic genome plot tool to aid the SNP association studies. BMC Bioinformatics 2010, 11(Suppl 4):P4.
  28. Zhi-Qiang Du, Danielle M. Gorbach, Hu, Zhi-Liang, Max F. Rothschild (2010). Segmental Duplications In Pig Genome. Plant & Animal Genomes XVIII Conference, January 9-13, 2010, Town & Country Convention Center, San Diego, CA.
  29. Milton G Thomas, Sunday O Peters, Kadir Kazilkaya, Dorian J Garrick, Rohan L Fernando, James M Reecy, Z-L Hu, Faye D Schilkey, Robert L Weaber, Gail A Silver (2010). QTL, Hypothalamic-Transcriptome, And Candidate Gene Query Suggest Bovine Chromosome 2 Influences Heifer Pregnancy. Plant & Animal Genomes XVIII Conference, January 9-13, 2010, Town & Country Convention Center, San Diego, CA.
  30. Hu, Zhi-Liang, Xiao-lin Wu, Daniel Gianola and James M. Reecy (2009). Melting into thin air: A preliminary analysis of pig genome DNA marker distribution on chromosome 4 in relation to QTL locations. Pig genome III - Swine Genome Sequencing Consortium and PigNet Genome Conference, Hinxton, UK, Nov. 2-4, 2009.
  31. Hu, Zhi-Liang, Cari Park, Eric Fritz, Mindy Dwindell, Mary Shimoyama, James M. Reecy (2009). VCMap V2: a cross-species, integrated annotation platform. Cold Spring Harbor Bovine Genome Consortium meeting.
  32. Hu, Zhi-Liang, Cari Park, Eric Fritz, Mindy Dwindell, Mary Shimoyama, James M. Reecy (2009). Expanding the Utility of Animal QTLdb. Plant & Animal Genomes XVII Conference, January 10-14, 2008, Town & Country Convention Center, San Diego, CA.
  33. Xiao-Ping Li, Cheol-Koo Lee, Hu, Zhi-Liang, Kwan-suk Kim (2009). Quantitative Gene Expression Analysis for Meat Quality Related Genes on Pig Chromosome 6. Plant & Animal Genomes XVII Conference, January 10-14, 2008, Town & Country Convention Center, San Diego, CA.
  34. Martien A.M. Groenen, Richard P.M.A. Crooijmans, Antonio M. Ramos, Andreia J. Amaral, Hinri Kerstens, Christian Bendixen, Jakob Hedegaard, Gary Rohrer, Tim Smith, Curt Van Tassel, Jeremy F. Taylor, Max Rothschild, Hu Zhi-Liang, Dan Nonneman, Jon Beever, Alan Archibald, Andy Law, Denis Milan, Mark Hansen, Larry Schook (2009). Design of The Illumina Porcine 50K+ SNP Iselect™ Beadchip And Characterization of The Porcine HapMap Population. Plant & Animal Genomes XVII Conference, January 10-14, 2008, Town & Country Convention Center, San Diego, CA.
  35. Danielle M. Gorbach, Hu, Zhi-Liang, Zhi-Qiang Du, Max F. Rothschild (2009). Intra- And Interspecies SNPs Predicted Using ESTs From Seven Shrimp Species. Plant & Animal Genomes XVII Conference, January 10-14, 2008, Town & Country Convention Center, San Diego, CA.
  36. Hu, Zhi-Liang, Eric Ryan Fritz, Svetlana Dracheva, Behnam Abasht, Stacey N. Meyers, Denis M. Larkin John Bastiaansen, Carol Scott, Xiao-Ping Li, Wonhee Jang, Kwan-Suk Kim, Donna Maglott, Sean Humphray, Jonathan E. Beever, Susan J. Lamont, Harris A. Lewin, Shu-hong Zhao, Jane Rogers, Jill Maddox, Max F. Rothschild and James M. Reecy (2008). Animal QTLdb: A Tool Set to Warehouse and Compare Cattle, Pigs, Chicken and Sheep QTL within and Between Species. International Society for Animal Genetics (ISAG), July 20-24, 2008, RAI Conference Centre, Amsterdam,The Netherlands.
  37. Jan Aerts, Wilfrid Carre, Dirk-Jan De Koning, Hu, Zhi-Liang, Dave Burt, Andy Law, Jim Reecy (2008). MIQAS - Minimal Information for QTL And Association Studies. Plant & Animal Genomes XVI Conference, January 12-16, 2008, Town & Country Convention Center, San Diego, CA.
  38. Fritz, Eric; Lunney, Joan; Hu, Zhi-Liang; Reecy, James (2008), The PRRS Host Genomic Consortium (PHGC) Database: Management of large data sets. USDA/PRRS Abstract, p324.
  39. Hu, Zhi-Liang and James M. Reecy (2008). Extension of Animal QTLdb (II): Alignment of New Microsatellite Markers, SNPs and Microarray Elements to cattle, chicken and pig QTL maps and Comparative Mapping Tools for Positional Genome Information Mining. Plant & Animal Genomes XVI Conference, January 12-16, 2008, Town & Country Convention Center, San Diego, CA
  40. Hu, Zhi-Liang and James M. Reecy (2008). Database Resources Development and Sharing: A Community Approach. Plant & Animal Genomes XVI Conference, January 12-16, 2008, Town & Country Convention Center, San Diego, CA.
  41. Danielle Bowen, Hu, Zhi-Liang, Zhi-Qiang Du, Max F. Rothschild (2008). Using SNPidentifier to detect SNPs from EST collections that do not contain chromatogram files. Plant & Animal Genomes XVI Conference, January 12-16, 2008, Town & Country Convention Center, San Diego, CA.
  42. Hu, Zhi-Liang, Eric Fritz, Behnam Abasht, Susan Lamont, James Reecy (2007). Animal QTLdb: QTL data curation issues, solutions and lessons. The 2nd International Biocuration Meeting, San Jose, CA, October 25-28, 2007.
  43. Max F. Rothschild , Hu, Zhi-Liang, (2007). Advances In Swine QTL Mapping. Plant & Animal Genomes XV Conference, January 13-17, 2007, Town & Country Convention Center, San Diego, CA
  44. Hu, Zhi-Liang, Jie Bao and James M. Reecy (2007). Gene Ontology (GO) Terms Classifications Counter. Plant & Animal Genome XV Conference, San Diego, CA, January 13-17, 2007.
  45. Hu, Zhi-Liang and James M. Reecy (2006). NRSP-8 Bioinformatics: Databases and Resources. Proceedings of the 30th International Conference on Animal Genetics (ISAG) 2006, page 105, Porto Seguro, BA, Brazil, August 20-25, 2006.
  46. Hu, Zhi-Liang, Max F. Rothschild, and James Reecy (2006). "NRSP-8 Pig Genome Informatics: Databases and Resources". First European Conference on Pig Genomics, Lodi, Italy, February 20-21, 2006.
  47. Bao, Jie, Hu, Zhi-Liang, James Reecy, Vasant Honavar. (2006). Collaborative Construction of Animal Trait Ontologies and Annotation of Quantitative Trait Loci (QTL) Data from Multiple Species. International KR-MED Workshop: Biomedical Ontology in Action. November 8, 2006, Baltimore, Maryland, USA.
  48. Hu, Zhi-Liang, Max F. Rothschild, and James Reecy (2006). "PigQTLDB Extensions: Towards Integrated Genomics Resources Tools". Oral Presentation on the Plant & Animal Genome XIV Conference, San Diego, CA, January 14-18, 2006.
  49. Hu, Zhi-Liang, Sean Humphray, Carol Scott, Jane Rogers, Antonio M. Ramos, James M. Reecy and Max F. Rothschild (2006). "Regional Genome Sequence Assembly for a Targeted Segment on Porcine Chromosome 17". Plant & Animal Genome XIV Conference, San Diego, CA, January 14-18, 2006.
  50. Antonio M Ramos, Hu, Zhi-Liang, Sean Humphray, Jane Rogers, Jim Reecy, Max F Rothschild (2006). "From Genome Scan To Fine Mapping To Sequence Information: Steps Towards The Clarification of The Mechanisms Controlling Porcine Chromosome 17 QTL for Meat Quality". Plant & Animal Genome XIV Conference, San Diego, CA, January 14-18, 2006.
  51. Hu, Zhi-Liang, Jie Bao, Max F. Rothschild, Vasant Honavar and James M. Reecy (2006). "Developing Frameworks And Tools for Animal Trait Ontology (ATO)". Plant & Animal Genome XIV Conference, San Diego, CA, January 14-18, 2006.
  52. Hu, Zhi-Liang, Sean Humphray, Carol Scott, Stacey N. Meyers, Jane Rogers, Max F. Rothschild and James M. Reecy (2006). "Extension of PigQTLdb: Genome-wide Alignment of BAC FPC Maps and RH Maps for QTL Positional Gene Mining". Plant & Animal Genome XIV Conference, San Diego, CA, January 14-18, 2006.
  53. Hu, Zhi-Liang, James M. Reecy and Wentian Li (2006). "A Database for Genetic Analysis Software". Plant & Animal Genome XIV Conference, San Diego, CA, January 14-18, 2006.
  54. Hu, Zhi-Liang, Svetlana Dracheva, Wonhee Jang, Donna Maglott, John Bastiaansen, Max F. Rothschild and James M. Reecy (2005). "PigQTLdb: A Pig QTL Database". Plant & Animal Genome XIV Conference, San Diego, CA, January 15-19, 2005.
  55. Hu, Zhi-Liang, Kimberly Glenn, Antonio M. Ramos, Charles J. Otieno and Max F. Rothschild (2004). "Expeditor: A Pipeline for Designing Pig Primers Using Human Gene Structure and Pig EST Information". Plant & Animal Genomes XII Conference, San Diego, CA, January 10-14, 2004.
  56. Hu, Zhi-Liang and Max Rothschild (2003). "A Frame-Work for Developing the Pig QTL Database". The 13th North American Colloquium on Animal Cytogenetics & Gene Mapping. Louisville, Kentucky, July 13-17, 2003.
Last updated: (Oct 12, 2022)
© 2003-2022 USA · USDA · NAGRP · Bioinformatics Coordination Program.
Contact: NAGRP Bioinformatics Team
Helpdesk