COMRAD - Cattle Comparative Radiation Hybrid Map

Marker Table for Chromosome 2

Framework
markers
Marker IDPrimer 1Primer 2Retention
Frequency
Gene Names
 ARO28 GATTTCTCTAGTGAGTAACA TCTTGCCCAGATGTTCTTAG 0.138  
 BL1001 AGACGAGGCAACTTGGAATCT CGTGTCAGAAAACATAACTGCC 0.191  
 BM2113 GCTGCCTTCTACCAAATACCC CTTCCTGAGAGAAGCAACACC 0.255  
 BM3010 TCATCTTTGTCAAGACCTGGC AGTGGGAGAGGGCTTTGG 0.234  
F2 BM4117 CCCTGAAGTGTCAGTGGACC ACTCAGGTCTGCCTGGAGC 0.16  
 BM81124 GCTGTAAGAATCTTCATTAAGCACT CCTGATACATGCTAAGGTTAAAAAC 0.283  
 BMS1126 AGCCAGCAGCAATCAAGG GCCAGCATCAAGTCAGCTC 0.149  
 BMS1264 TGCACACAAACAAGCATTTT GCGAGCCATGAACATGTAAT 0.191  
 BMS1837 ACGATCTAGCAATAGTTGTTCACA TTCATTATTCCTTCCTTTGTCTTC 0.16  
F2 BMS1987 TGATGCAGAGAACGTTTTAATTT CTTGGGGTAGGCAGAGATTT 0.189  
 BMS2 TTCCAGAGAAACAGAGCCAG ACTGTGGGACTTAGTTTCCATG 0.242  
 BMS2053 TTAAGAATGCTTGACGGTTTG CAACACGAGGTCCTTTACATG 0.163  
 BMS2626 AGACCATGCTTAACTGGGTAGAGA CATTACAAACTTTAGCCTCACA 0.16  
 BMS2782 TGTGCAGCAATAAGACCCAG TGTAAGTGGGAGGGCAAGTC 0.149  
 BMS353 TATCATTCTCTCTCTTTCACATCCA CTGATTTATCTTGAAATGCAGGG 0.202  
F2 BMS356 ACCTCAGAGATGACGCAAGG TTGAAGTTTTTGTGCTGTTTGG 0.213  
 BMS803 GAGGTAGGGAATCAGGTAAGGC AGCTGCATGGCTGAACAAG 0.128  
 BP22 GAAAGTAGAGGCGTGGATGC GGAGATGCAGGTCCAATCC 0.191  
 BULGE20 CAGCAGGTCTGTTGAAGTGTATCAG AGTGGTACGATTCACAGGTAGCCAG 0.287  
 BULGE27 CTACCTAACAGAATGATTTTGTAAG AGTGTTCTTGCCTAGAGAATCCCAG 0.223  
 BULGE28 AGGCATACATCTGGAGAGAAACATG CAGAGGAGCCTAGCAGGCTACCGTC 0.319  
F1 2235 GCATGTGGGACCTTAGTTCTG AAATGCTGTACCTTCCTTCACC 0.286  
 2227 GCTGCTCTGCATACAACTCTAG TGTGTTTCAGGAGATAGCAATG 0.25  
F1 BY52145 GCAAATAACCTCCATATTGCTG ATGGAAGTGGCTTAAGTGTCC 0.234  
F1 COL3A* CAGTGGGAATGTAAAGAAAGCC CCATCCTCCAGAACTGTGTATG 0.287 collagen, type III, alpha 1 chain 
 CSSM042 GGGAAGGTCCTAACTATGGTTGAG ACCCTCACTTCTAACTGCATTGGA 0.277  
 ETH121 CCAACTCCTTACAGGAAATGTC ATTTAGAGCTGGCTGGTAAGTG 0.255  
 GCG* GGCTACTTATGTGTATTACCTGAATG TCAACTCACTATTGTGTCCCC 0.2 glucagon 
F2 IDVGA64 GCAGAGGAGGTTTTCAGATTC CGGAGATCAGAGCACTTGTC 0.245  
 ILSTS025 GTTACCTTTATATAAGACTCCC AATTTCTGGCTGACTTGGACC 0.255  
F1 ILSTS026 CTGAATTGGCTCCAAAGGCC AAACAGAAGTCCAGGGCTGC 0.266  
 ILSTS030 CTGCAGTTCTGCATATGTGG CTTAGACAACAGGGGTTTGG 0.298  
 ILSTS082 TTCGTTCCTCATAGTGCTGG AGAGGATTACACCAATCACC 0.223  
 INRA135(D2S47) TCACTGGAAAGGGCTATTGC GGGGTTGCAGAGGGTAAGAC 0.194  
F1 MYOS* GTTCATAGATTGATATGGAGGTGTTCG ATAAGCACAGGAAACTGGTAGTTATT 0.255 myostatin 
 RI918 ACTTATGAAAAATTACTGAGAGCG TTACTACTCCTGTCGCCTCTGA 0.269  
 RM041 GATCACAGAAACATGCA TTCCTAACATCACAGCACCTCC 0.17  
 RM356 GCATCACTAACATCCACTGAGG CCACTAGGAGAGGTCATTCCC 0.149  
 TEXAN1 GCACACAGATTCTTTACCAAGTG TGGATGGAGGAACCTGACAG 0.16  
F1 TEXAN2 ACATTGTCATGTGGTTGCTAAC ACTCTGGGTATGTATATGTGCAAG 0.247  
 TEXAN4 AGAAGTCCTTGCTTTCACAGAC TTTTGGTGCTTGATGCTATTAG 0.106  
 TEXAN5 TGGAAATACCGACTCCTGATTC CATGGTCTAACATCTAATAAATGCC 0.213  
 TGLA226 AGTGGAATCCAGATAAGATGTATCA ACATGAAAAGAAGCAATATCGTAAC 0.117  
F1 TGLA377 GACTGTCATTATCTTCCAGCGGAG AGACTTTGGATCTCTGGTTGAAATG 0.245  
F1 TGLA431 GGTCATATCCTTCAAAATTTACTTA CCCATTTATTCCTAATTTCAACTT 0.237  
F2 TNP1* CCAGGTGCCCAACATAGG CCAATGCAGCTCAAGGCTAC 0.151 transition protein 1 
Markers below are Not included in the map
 BMB9248 AGGAAGGAACATTTCCAAACTC TGCATATATTGAAGAATCCTTGTG 0.16  
 BMS3019 AATATGCAGCATCAGTCCTTCC GACACGACTGAGCGACTAAGC 0.202  
 BMS778 CTTGGGGAGGCAGAATTTA CCTCTCCACATACTCTTCTCCA 0.096  
 IDVGA37 CCTCTCTTTCTCTATGCTCACA TAACAGGACAAGTCTTCAGGTG 0.138  
 NRAMP* GCCACGGGTGGGATGAGT TGAGCTAGGAGATAGCAGG 0.266 natural resistance-associated macrophage protein 1 
 PROC* TCTGACCCCAGCTTCTGC CCACCAGGTCCCACTCTG 0.319 endothelial cell protein C/ 
  • Back to the chromosome panel
  • Data from http://www.projects.roslin.ac.uk/comrad/introduction.html
  • Contact: Dr John Williams
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