| Framework markers | Marker ID | Primer 1 | Primer 2 | Retention Frequency | Gene Names |
|---|---|---|---|---|---|
| AP2B* | GCAGTGTGCTCCCATCTCTT | TCATGGAGCCAGAGAGGTGA | 0.096 | ||
| F1 | BAK1BCL2 | TATGCACAGGGGAACTGTGA | TGGGGGTTGCAGTTTATTTT | 0.398 | |
| F2 | BM1258 | GTATGTATTTTTCCCACCCTGC | GAGTCAGACATGACTGAGCCTG | 0.319 | |
| F3 | BM1443 | AATAAAGAGACATGGTCACCGG | TCGAGGTGTGGGAGGAAG | 0.266 | |
| F2 | BM1815 | AGAGGATGATGGCCTCCTG | CAAGGAGACAAGTCAAGTTCCC | 0.266 | |
| BM1818 | AGCTGGGAATATAACCAAAGG | AGTGCTTTCAAGGTCCATGC | 0.185 | ||
| F3 | BM1905 | GTCCATGGGTTCACAAAGAG | ACGCCTGCTGATGCTGTAG | 0.202 | |
| F1 | BM47 | ACAGGAAGGAGAAGGGGAAG | CCGGGGTCACATGACTCTG | 0.287 | |
| F3 | BMS2269 | AATTCACCCACTGCCAGC | TGAAATATGCTTACCTCCCACC | 0.202 | |
| BMS2275 | GGGGATATCGAGAGGATGTG | ATCCTCCAGCCTACACCTAGC | 0.16 | ||
| F3 | BMS4036 | GCTCCCAATAAGAAGGTCCC | GGATCGAGACTTAAGAACACGC | 0.16 | |
| F2 | BMS468 | GTTAAGCAGAGGGTTTCCCC | TATTCCCAGGTGCTCTGAGG | 0.266 | |
| Bola-A* | GATGAAGCATCACTCAGTCCC | GGCTCTGATGTGTCTCTCACG | 0.287 | Bovine lymphocyte antigen A | |
| BOLADRBP* | ATCCTCTCTCTGCAGCACATTTCCT | CGCGCTCACCTCGCCGCTG | 0.191 | Bovine lymphocyte antigen DR beta subunit | |
| F3 | BP34 | ATTTGAAAAGGCCTGTGAGG | TAGCTTGACTCCAACCTCTTCC | 0.213 | |
| BTN* | GAGGCATTTTCAGGCATCAT | GTGGGAGCCTGGATAAGACA | 0.192 | butyrophilin | |
| C4* | GGAGGGTTACCGGATGAAAT | ATCCAGCTGTTCGAGTCCAG | 0.333 | complement component 4 | |
| CI0BT528B | TGCTTCTGTAAATGACGTTCCG | AACTCCAGGAGTTGGTGATGG | 0.298 | ||
| CMAH* | AGGCTGCCTATGAAGGTTGA | CACTTCAGGCAGTGGAAACA | 0.138 | cytidine monophosphate-N-acetylneuraminic acid hydroxylase | |
| F3 | CSSM024 | GAGGATGCAGAACCAGGCGTTAGA | GGTCGAAGAGAGTCAGACATGACT | 0.255 | |
| CYP21* | GGAGGGTTACAGTCCATGAGTTTG | TCGCGATCCAACTCCTCCTGAAG | 0.298 | cytochrome P450, subfamily XXI [steroid 21-hydroxylase] | |
| CYP21A2* | GGAGGGTTACAGTCCATGAGTTT | TCGCGATCCAACTCCTCCTGAAG | 0.33 | cytochrome P450, subfamily XXI [steroid 21-hydroxylase] | |
| F1 | DMA* | CACACAATGTACTGCCAGGA | CAGTGTGAACACCTGAACGA | 0.33 | major histocompatibility complex, class II, DM alpha-chain, expressed |
| DRB3* | GAGAGTTTCACTGTGCAG | CCAGAGTGAGTGAAGTATCTCT | 0.202 | major histocompatibility complex, class II, DR beta 3 | |
| F3 | F13A1* | CAAGGAGAGGTGGGATAGCA | AGATCCCTTGTGGGGTCATA | 0.351 | coagulation factor XIII, A1 polypeptide [blood coagulation factor XIII A1 subunit] |
| GSTA2* | CCTCCCATGGATGAGAAAAT | TCTGAAACACATTCTAGGAGGAGA | 0.163 | glutathione S-transferase A2 | |
| HSPA1* | GGATTGCTCATGTTTGTTATGG | CTTGGAAGTAAACAGAAACGGG | 0.247 | heat shock 70 kD protein 1 | |
| HSPA1B* | CAAGATCACCATCACCAACG | CAGCTCCTTCCTCTTGTGCT | 0.298 | heat shock 70 kD protein 2 | |
| F1 | INRA064 | GCCCACAGCGCTCTCTAC | CTGAAAGCAGAATGAGGTGC | 0.33 | |
| INRA132 | AACATTTCAGCTGATGGTGGC | TTCTGTTTTGAGTGGTAAGCTG | 0.312 | ||
| F1 | LMP7* | GAATGGTTCTGTAGGATCTC | CCTTCTCTCTAATCTCAAGC | 0.362 | proteasome subunit, beta type 8 [prosome, macropain] [large multifunctional protease 7] |
| MCM3* | TGGTCTGCATCGATGAGTTT | CCAATGGCAGTAGCAAGATG | 0.223 | ??? | |
| MOG* | CAGCTGCTAAAAGAGACCATTG | TTTCAATTCCATCGCTGCCTCC | 0.217 | myelin oligodendrocyte glycoprotein | |
| F1 | PIM1* | GATCCACTCTGGAGGGCTAT | CTGCTCAAGGACACCGTCTA | 0.29 | pim-1 oncogene |
| POU5F1POU | TCGGACACAACTGAAGCAAC | TGAGCCAGATCAGTCCTGTG | 0.287 | ||
| F2 | RM033 | GCTCATTCTCCTGGGATGCAGA | GCTCCTTTAGTTTTCTTGTGGGAG | 0.181 | |
| F2 | TNF* | CAGGCATAAACCAGGATGTCC | GCGGCAGTGGCAGCGTGGCAG | 0.266 | tumor necrosis factor, alpha [cachectin] |
| TNFA* | TCTCAAGCCTCAAGTAACAAGC | ATGAGGTAAAGCCCGTCAGC | 0.293 | tumor necrosis factor, alpha [cachectin] | |
| TNFe* | AGAAGACAGAGGCAGGTCCA | AAGAATCCCTTCTCCCTCCA | 0.266 | ??? | |
| TNH* | 0.223 | ||||
| F2 | UWCA1 | AGAGTGTCTTATAATTAGCCAGGAAG | AACTCTTTCAGTTGGTTCCTGT | 0.298 | |
| F2 | VEGF* | GATGTGACAAGCCGAGGC | GGATTCAGGATTGTTCTGTCG | 0.266 | vascular endothelial growth factor |
| Markers below are Not included in the map | |||||
| CSH1* | AGCCCTGTTGAGGTTGGTTA | CGAATCCCTGTGTAGGCAGT | 0.181 | placental lactogen | |
| CSNK2B* | CGGTTTCAAGATCCATCCAATG | TTCCCACCACAATAACGACTCC | 0.356 | casein kinase 2, beta polypeptide | |
| MLN* | CAGCAGAGGTCAGAGGAGGT | GGGAGAGGGTGTTTTCCTTC | 0.348 | motilin | |
| PRL* | GGAAAGTGAACATGACTGTCTAG | GCCCTCTCTTCTACAATGAACAC | 0.191 | prolactin | |
| RDS* | CTGCATCCAGTACCAGCTCA | AGAAAGGCCTTCCAGGTCTC | 0.483 | retinal degeneration, slow [human : retinitis pigmentosa 7] | |
| RM002 | AGCAATGTCAAACATTGCTCC | TCCATCTTTACAACTTTTGAATC | 0.086 | ||
| SFRS3* | TGGAACAGTGACACAAAGGTG | TTTCCAGCTGGCTTTTGAGT | 0.407 | splicing factor, arginine/serine-rich 3 | |