| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | 42.39 (cM) |
| QTL Span: | 42.39-42.39 (cM)
23.5-23.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs41641987 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.51E-13 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PAFAH1B1 (platelet activating factor acetylhydrolase 1b regulatory subunit 1) |
| Cis/Trans acting type: |  |
| Links:
Map view
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Holstein, Montbeliarde, and Normande cows. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip or BovineLD v.2 BeadChip (imputed to 50k) and analyzed for milk production, udder morphology, and mastitis traits. A total of 43,800 SNPs were used for analysis. |
| Analysis: | GWAS was done within breed using mixed linear models. |
| Software: | FImpute, GCTA |
| Notes: | |
| Reference |
|---|
| Authors: | Marete A, Lund MS, Boichard D, Ramayo-Caldas Y |
| Affiliation: | Génétique Animale et Biologie Intégrative, INRA, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France |
| Title: | A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds |
| Journal: | PloS one, 2018, 13(7): e0199931 |
| Links: |
PubMed | Abstract | List all data
|
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