| QTL Map Information |
|---|
| Chromosome: | 29 |
| QTL Peak Location: | 18.30 (cM) |
| QTL Span: | 18.30-18.30 (cM)
13.2-13.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs109000169 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Chromosome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were German Black Pied (Deutsches Schwarzbuntes Niederungsrind) cows. |
| Breeds associated:
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| Design: | Animals were genotyped sing the Illumina BovineSNP50 v2 BeadChip, with data imputed to HD and analyzed for parasite susceptibility traits. A total of 423,654 SNPs were used for analysis. |
| Analysis: | Phenotypes were precorrected for fixed effects, and linear mixed models were applied. |
| Software: | Beagle, PLINK, SAS, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | May K, Scheper C, Brügemann K, Yin T, Strube C, Korkuć P, Brockmann GA, König S |
| Affiliation: | Institute of Animal Breeding and Genetics, Justus-Liebig-University of Gießen, 35390, Gießen, Germany |
| Title: | Genome-wide associations and functional gene analyses for endoparasite resistance in an endangered population of native German Black Pied cattle |
| Journal: | BMC genomics, 2019, 20(1): 277 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Dictyocaulus viviparus |
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