| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs379837335 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 4.28E-02 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | ((ensembl Gene)) |
| Cis/Trans acting type: | Cis  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were 143 crossbred or multi-breed beef cattle. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using the Illumina GGP Bovine 100K SNP chip, and GWAS was performed for bovine respiratory disease susceptibility. |
| Analysis: | A single-SNP based mixed linear model was used. |
| Software: | GATK v3.8, VCFtools v0.1.14, PLINK v1.90b6.7, GCTA v1.93.2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li J, Mukiibi R, Jiminez J, Wang Z, Akanno EC, Timsit E, Plastow GS |
| Affiliation: | Livestock Gentec, Department of Agriculture, Food & Nutritional Science, University of Alberta, Edmonton, AB, Canada |
| Title: | Applying multi-omics data to study the genetic background of bovine respiratory disease infection in feedlot crossbred cattle |
| Journal: | Frontiers in Genetics, 2022, 13: 1046192 |
| Links: |
PubMed | Abstract | List all data
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