Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
13
Number of QTL / associations found:
1,827
Number of chromosomes where QTL / associations are found:
29
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
4102.42859
28
9e-41
2.372727e-40
Chromosome 2
99.87302
28
5.310267e-10
7.699887e-10
Chromosome 3
282.49208
28
7.155343e-44
2.075049e-43
Chromosome 4
46.42859
28
0.01572893
1.900579e-02
Chromosome 5
16.71423
28
0.9540222
9.999994e-01
Chromosome 6
91.00000
28
1.382553e-08
1.909240e-08
Chromosome 7
7.42859
28
0.9999649
9.999994e-01
Chromosome 8
5.15879
28
0.9999994
9.999994e-01
Chromosome 9
515.87302
28
3.608688e-91
2.093039e-90
Chromosome 10
557.96819
28
7.205167e-100
5.223746e-99
Chromosome 11
161.77772
28
8.98659e-21
1.533007e-20
Chromosome 12
579.63490
28
2.328505e-104
3.376332e-103
Chromosome 13
99.87302
28
5.310267e-10
7.699887e-10
Chromosome 14
66.85718
28
5.05373e-05
6.372094e-05
Chromosome 15
381.53973
28
1.077760e-63
3.472782e-63
Chromosome 16
436.63490
28
6.704027e-75
2.430210e-74
Chromosome 17
161.77772
28
8.98659e-21
1.533007e-20
Chromosome 18
224.71423
28
1.319152e-32
2.732529e-32
Chromosome 19
99.87302
28
5.310267e-10
7.699887e-10
Chromosome 20
40.44443
28
0.06033201
6.998513e-02
Chromosome 21
224.71423
28
1.319152e-32
2.732529e-32
Chromosome 22
475.42859
28
7.598814e-83
3.672760e-82
Chromosome 23
455.82537
28
7.959286e-79
3.297418e-78
Chromosome 24
10.11114
28
0.9992253
9.999994e-01
Chromosome 25
579.63490
28
2.328505e-104
3.376332e-103
Chromosome 26
238.53973
28
2.831432e-35
6.842627e-35
Chromosome 27
211.30161
28
4.885247e-30
9.444811e-30
Chromosome 28
557.96819
28
7.205167e-100
5.223746e-99
Chromosome 29
74.49208
28
4.284808e-06
5.648156e-06
Chi-squared (χ2) test: Which of the 13 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Body capacity
33.78266
12
0.0007298656
8.625684e-04
Body circumference
119.34668
12
8.34112e-20
2.168691e-19
Body depth
280.49778
12
5.776246e-53
2.503040e-52
Body height
174.98845
12
4.546753e-31
1.477695e-30
Body length
88.14168
12
1.129292e-13
1.835099e-13
Body weight
411.16753
12
1.631202e-80
2.120563e-79
Body width
20.4941
12
0.05829776
6.315591e-02
Cannon bone circumference
301.81505
12
1.952542e-57
1.269152e-56
Chest width
70.25393
12
2.871034e-10
4.147049e-10
Head width
7.95586
12
0.7885702
7.885702e-01
Hip width
111.60998
12
2.873062e-18
6.224968e-18
Rump length
41.01668
12
4.868881e-05
6.329545e-05
Rump width
97.97052
12
1.389337e-15
2.580197e-15
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
29
χ2
=
10806.507790
Number of traits:
13
df
=
336
Number of QTLs:
1,827
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
