| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
124.0-124.0 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs317522475 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 6.84% | | P_values | 3.86E-8 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | FRMPD4 (FERM and PDZ domain containing 4) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were Laiwu Black chickens. |
| Breeds associated:
n/a
|
| Design: | Birds were subjected to whole-genome resequencing, and GWAS was performed for number of eggs produced during different stages of the laying period. A total of 10,810,544 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used for GWAS. |
| Software: | SAMtools 1.2, GATK 3.3, PLINK v1.9, EMMAX |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lei Q, Zhang S, Wang J, Qi C, Liu J, Cao D, Li F, Han H, Liu W, Li D, Tang C, Zhou Y |
| Affiliation: | Poultry Institute, Shandong Academy of Agricultural Sciences, 250100, Ji'nan, China.; Poultry Breeding Engineering Technology Center of Shandong Province, 250100, Ji'nan, China |
| Title: | Genome-wide association studies of egg production traits by whole genome sequencing of Laiwu Black chicken |
| Journal: | Poultry science, 2024, 103(6): 103705 |
| Links: |
PubMed | Abstract | List all data
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