| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | n/a
42.8-43.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs315792057 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from an F2 resource population derived from reciprocal crosses between White Leghorn and Dongxiang Blue-Shelled chickens. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Affymetrix 600K chicken high-density genotyping array and analyzed for egg production traits. A total of 435,243 SNPs were used for analysis. |
| Analysis: | Linear mixed models were used. |
| Software: | PLINK, Beagle, R software, Haploview, DMU, GCTA software |
| Notes: | Table 4 lists SNP rs312387499 on GGA1 at 56,459,390 bp; the SNP at this genome location is actually rs13870912 and has been entered as such. |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yuan J, Sun C, Dou T, Yi G, Qu L, Qu L, Wang K, Yang N |
| Affiliation: | National Engineering Laboratory for Animal Breeding and MOA Key Laboratory of Animal Genetics and Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, P.R. China |
| Title: | Identification of Promising Mutants Associated with Egg Production Traits Revealed by Genome-Wide Association Study |
| Journal: | PloS one, 2015, 10(10): e0140615 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | 21-40 weeks of age |
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