Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fiber traits:
6
Number of QTL / associations found:
146
Number of chromosomes where QTL / associations are found:
22
Chi-squared (χ2) test: are fiber traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
26.00994
21
0.2060703
5.666933e-01
Chromosome 2
17.21544
21
0.6979666
9.999998e-01
Chromosome 3
26.00994
21
0.2060703
5.666933e-01
Chromosome 4
19.43460
21
0.5572825
9.999998e-01
Chromosome 5
6.28392
21
0.9991782
9.999998e-01
Chromosome 6
2.42094
21
0.9999998
9.999998e-01
Chromosome 7
0.36612
21
0.998329325823115
9.999998e-01
Chromosome 8
0.11958
21
0.998329325823115
9.999998e-01
Chromosome 9
19.43460
21
0.5572825
9.999998e-01
Chromosome 10
11.95518
21
0.9408199
9.999998e-01
Chromosome 11
11.95518
21
0.9408199
9.999998e-01
Chromosome 12
28.72230
21
0.1208298
4.430426e-01
Chromosome 13
1.68120
21
0.998329325823115
9.999998e-01
Chromosome 14
19.43460
21
0.5572825
9.999998e-01
Chromosome 15
6.28392
21
0.9991782
9.999998e-01
Chromosome 16
79.27026
21
1.068904e-08
1.175794e-07
Chromosome 17
28.72230
21
0.1208298
4.430426e-01
Chromosome 18
28.72230
21
0.1208298
4.430426e-01
Chromosome 19
11.95518
21
0.9408199
9.999998e-01
Chromosome 22
6.28392
21
0.9991782
9.999998e-01
Chromosome 23
28.72230
21
0.1208298
4.430426e-01
Chromosome 25
889.35240
21
9.795294e-175
2.154965e-173
Chi-squared (χ2) test: Which of the 6 fiber traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Fiber curvature
22.33334
5
0.0004524499
9.048998e-04
Fiber diameter coefficient of variance
26.10263
5
8.52377e-05
2.557131e-04
Fiber diameter standard deviation
31.42035
5
7.736869e-06
4.642121e-05
Mean fiber diameter
14.87341
5
0.01091716
1.310059e-02
Primary fiber diameter
5.68421
5
0.338169
3.381690e-01
Primary fiber diameter coefficient of variance
21.38248
5
0.0006857538
1.028631e-03
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
22
χ2
=
1270.356120
Number of traits:
6
df
=
105
Number of QTLs:
146
p-value
=
3.046808e-199
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
