Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of sensory characteristics traits:
4
Number of QTL / associations found:
59
Number of chromosomes where QTL / associations are found:
21
Chi-squared (χ2) test: are sensory characteristics traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
0.05164
20
0.998329325823115
9.999999e-01
Chromosome 2
73.61096
20
4.636601e-08
9.736862e-07
Chromosome 3
2.01776
20
0.9999999
9.999999e-01
Chromosome 4
0.93300
20
0.998329325823115
9.999999e-01
Chromosome 5
0.93300
20
0.998329325823115
9.999999e-01
Chromosome 6
4.66184
20
0.99984
9.999999e-01
Chromosome 7
0.93300
20
0.998329325823115
9.999999e-01
Chromosome 9
0.93300
20
0.998329325823115
9.999999e-01
Chromosome 10
4.66184
20
0.99984
9.999999e-01
Chromosome 11
0.05164
20
0.998329325823115
9.999999e-01
Chromosome 13
6.83132
20
0.9972027
9.999999e-01
Chromosome 14
4.66184
20
0.99984
9.999999e-01
Chromosome 15
4.66184
20
0.99984
9.999999e-01
Chromosome 16
2.01776
20
0.9999999
9.999999e-01
Chromosome 17
6.83132
20
0.9972027
9.999999e-01
Chromosome 18
0.93300
20
0.998329325823115
9.999999e-01
Chromosome 19
0.93300
20
0.998329325823115
9.999999e-01
Chromosome 20
6.83132
20
0.9972027
9.999999e-01
Chromosome 21
4.66184
20
0.99984
9.999999e-01
Chromosome 22
4.66184
20
0.99984
9.999999e-01
Chromosome 24
0.93300
20
0.998329325823115
9.999999e-01
Chi-squared (χ2) test: Which of the 4 sensory characteristics traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Cooking loss
14.69998
3
0.002091843
0.008367372
Meat tenderness, sensory panel
4.90004
3
0.1792648
0.239019733
Water holding capacity
2.2685
3
0.5185823
0.518582300
meat flavor
4.90004
3
0.1792648
0.239019733
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
21
χ2
=
132.745760
Number of traits:
4
df
=
60
Number of QTLs:
59
p-value
=
2.027874e-07
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
