| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 5.94E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CNTN5 (contactin 5) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #282971
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Sheep were from a Texel x Altay F2 resource population. |
| Breeds associated:
|
| Design: | Animals were genotyped using either whole-genome sequencing or the Illumina Ovine SNP 600K BeadChip (with data imputed to whole genome), and GWAS was performed for muscle pH at various time points. A total of 613,178 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used. |
| Software: | GEMMA, GCTA v1.93.2, Beagle, PLINK1.9 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhao Y, He S, Huang J, Liu M |
| Affiliation: | College of Animal Science and Technology, Shihezi University, Shihezi 832000, China |
| Title: | Genome-Wide Association Analysis of Muscle pH in Texel Sheep × Altay Sheep F2 Resource Population |
| Journal: | Animals : an open access journal from MDPI, 2023, 13(13):2162 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #37443959
Add your comments
Note similar findings
Note contradictions
|
