Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fatness traits:
36
Number of QTL / associations found:
5,630
Number of chromosomes where QTL / associations are found:
20
Chi-squared (χ2) test: are fatness traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Y
9848.04624
19
9e-41
9.473684e-41
Chromosome X
1190.90952
19
8.186882e-241
1.637376e-239
Chromosome 1
13383.59148
19
9e-41
9.473684e-41
Chromosome 2
4592.43000
19
9e-41
9.473684e-41
Chromosome 3
1070.69616
19
4.217117e-215
2.108558e-214
Chromosome 4
6853.71564
19
9e-41
9.473684e-41
Chromosome 5
1094.22720
19
3.939271e-220
2.626181e-219
Chromosome 6
7707.74076
19
9e-41
9.473684e-41
Chromosome 7
23372.02476
19
9e-41
9.473684e-41
Chromosome 8
253.24704
19
6.804268e-43
1.701067e-42
Chromosome 9
870.42636
19
2.239843e-172
8.959372e-172
Chromosome 10
3717.68724
19
9e-41
9.473684e-41
Chromosome 11
1826.24868
19
9e-41
9.473684e-41
Chromosome 12
76.76388
19
6.672881e-09
6.672881e-09
Chromosome 13
452.74968
19
4.391638e-84
1.254754e-83
Chromosome 14
828.73548
19
1.669259e-163
5.564197e-163
Chromosome 15
1118.01420
19
3.231303e-225
3.231303e-224
Chromosome 16
2245.20444
19
9e-41
9.473684e-41
Chromosome 17
4074.74604
19
9e-41
9.473684e-41
Chromosome 18
2782.32696
19
9e-41
9.473684e-41
Chi-squared (χ2) test: Which of the 36 fatness traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Abdominal fat percentage
20.21028
35
0.9784072
1.000000e+00
Abdominal fat weight
8.70412
35
0.9999983
1.000000e+00
Adipocyte area
6.40706
35
1
1.000000e+00
Adipocyte diameter
90.1868
35
9.254737e-07
3.701895e-06
Adipocyte number
27.29145
35
0.820672
1.000000e+00
Adipocyte perimeter
6.40706
35
1
1.000000e+00
Adipocyte volume
6.40706
35
1
1.000000e+00
Backfat linear at last rib
23.22457
35
0.936216
1.000000e+00
Backfat linear at tenth rib
24.34903
35
0.9113982
1.000000e+00
Backfat percentage
8.62954
35
0.9999985
1.000000e+00
Backfat weight
30.975
35
0.6628635
1.000000e+00
Belly fat area
38.70636
35
0.3059478
9.178434e-01
External fat on ham
29.41526
35
0.7342876
1.000000e+00
External fat on loin
171.68466
35
6.079092e-20
4.376946e-19
Fat area percentage in carcass
146.27019
35
1.486493e-15
8.918958e-15
Fat percentage in carcass
31.75437
35
0.6255891
1.000000e+00
Fat weight (total)
27.74107
35
0.803679
1.000000e+00
Ham fat percentage
8.30579
35
0.9999991
1.000000e+00
Ham fat thickness
322.72546
35
2.908502e-48
3.490202e-47
Ham fat weight
20.75028
35
0.9731372
1.000000e+00
Intermuscular fat content
338.61863
35
2.263134e-51
4.073641e-50
Intestinal fat percentage
11.1487
35
0.999959
1.000000e+00
Intestinal fat weight
18.39367
35
0.9905544
1.000000e+00
Intramuscular fat content
199.06744
35
7.666879e-25
6.900191e-24
Leaf fat weight
49.53602
35
0.05265389
1.895540e-01
Loin fat percentage
27.01186
35
0.8308477
1.000000e+00
Marbling
402.63697
35
4.862425e-64
1.750473e-62
Neck fat weight
10.95329
35
0.999967
1.000000e+00
Obesity index
102.26299
35
1.653120e-08
7.439040e-08
Percentage of backfat and leaf fat in carcass
15.70753
35
0.9979718
1.000000e+00
Shoulder external fat weight
25.18859
35
0.8893008
1.000000e+00
Subcutaneous fat thickness
103.30654
35
1.154843e-08
5.939193e-08
Subcutaneous fat weight
45.35634
35
0.1128995
3.694893e-01
Subcutanous fat area
32.56461
35
0.5862335
1.000000e+00
Total body fat tissue linear
25.5276
35
0.8795056
1.000000e+00
leaf fat percentage
7.94703
35
0.9999995
1.000000e+00
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
20
χ2
=
87359.531760
Number of traits:
36
df
=
665
Number of QTLs:
5,630
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
