| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 144.75 (cM) |
| QTL Span: | 144.75-144.75 (cM)
147.7-147.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81475989 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were F2 pigs from a Duroc x Pietrain population.
Animal breed (IDs) involved: |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip, or a 9000 tag GeneSeek Genomic Profiler for Porcine LD panel with data imputed to PorcineSNP60, and analyzed for growth and fat deposition traits. A total of 40,569 SNPs were used for analysis. |
| Analysis: | An ultrafast implementation of the EMMAX procedure was used. |
| Software: | PLINK, AlphaImpute, R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Duarte JL, Cantet RJ, Rubio YL, Bates RO, Ernst CW, Raney NE, Rogberg-Muņoz A, Steibel JP |
| Affiliation: | Departamento de Produccion Animal, Facultad de Agronomia, UBA-CONICET, Buenos Aires, Argentina; Department of Fisheries and Wildlife, Michigan State University, East Lansing 48824, USA |
| Title: | Refining genomewide association for growth and fat deposition traits in an F2 pig population |
| Journal: | Journal of animal science, 2016, 94(4): 1387-97 |
| Links: |
PubMed | Abstract | List all data
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