| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | 89.16 (cM) |
| QTL Span: | 89.16-89.16 (cM)
89.2-89.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80803879 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 1.67E-3 | | Dominance effect: | n/a |
| Additive effect: | 0.052 |
| Associated Gene: | APOA2 (apolipoprotein A-II) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from an Iberian x Landrace backcross population. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 Beadchip and analyzed for fatty acid composition. A total of 40,476 SNPs from the chip, as well as an additional SNP in APOA2, were used for analysis. |
| Analysis: | Mixed models were used. |
| Software: | Qxpak, PLINK, Q-VALUE in R |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ballester M, Revilla M, Puig-Oliveras A, Marchesi J A P, Castelló A, Corominas J, Fernández A I, Folch J M |
| Affiliation: | Plant and Animal Genomics, Centre de Recerca en Agrigenòmica (Consorci CSIC-IRTA-UAB-UB), Edifici CRAG, Campus UAB, Bellaterra, 08193, Barcelona, Spain |
| Title: | Analysis of the porcine APOA2 gene expression in liver, polymorphism identification and association with fatty acid composition traits |
| Journal: | Animal genetics, 2016, 47(5):552-9 |
| Links: |
PubMed | Abstract | List all data
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