| QTL Map Information |
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| Chromosome: | 7 |
| QTL Peak Location: | 118.71 (cM) |
| QTL Span: | 118.39-119.03 (cM)
97.7-98.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs81396056 |
| Peak: | |
| Lower, "Significant": | rs80846252 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | LTBP2 (latent transforming growth factor beta binding protein 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were from an F(2) intercross between Landrace and Korean native pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for thoracic vertebra number. A total of 38,385 SNPs were used for analysis. |
| Analysis: | A linear mixed model was used. |
| Software: | PLINK, GCTA, QxPAK, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Park HB, Han SH, Lee JB, Cho IC |
| Affiliation: | Subtropical Livestock Research Institute, National Institute of Animal Science, 63242 Jeju, Republic of Korea |
| Title: | Rapid Communication: High-resolution quantitative trait loci analysis identifies LTBP2 encoding latent transforming growth factor beta binding protein 2 associated with thoracic vertebrae number in a large F2 intercross between Landrace and Korean native pigs |
| Journal: | Journal of animal science, 2017, 95(5): 1957-1962 |
| Links: |
PubMed | Abstract | List all data
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