| QTL Map Information |
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| Chromosome: | 7 |
| QTL Peak Location: | 133.69 (cM) |
| QTL Span: | 133.14-134.24 (cM)
109.9-110.8 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs80813511 |
| Peak: | |
| Lower, "Significant": | rs80793504 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 1.4% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SPATA7 (spermatogenesis associated 7) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from two commercial lines, a Large White-type line and a Landrace-type line. |
| Breeds associated:
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| Design: | Animals were genotyped using either the Illumina PorcineSNP60 BeadChip or the GeneSeek Custom 80K SNP chip and analyzed for semen quality traits. A total of 39,945 SNPs (Large White) or 41,478 SNPS (Landrace) were used for analysis.
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| Analysis: | Weighted ssGBLUP analysis was conducted within line. |
| Software: | BLUPF90, AIREMLF90, postGSf90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Marques DBD, Bastiaansen JWM, Broekhuijse MLWJ, Lopes MS, Knol EF, Harlizius B, Guimarães SEF, Silva FF, Lopes PS |
| Affiliation: | Animal Science Department, Universidade Federal de Viçosa, Viçosa, MG, 36.570-000, Brazil |
| Title: | Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs |
| Journal: | Genetics, Selection, Evolution : GSE, 2018, 50(1): 40 |
| Links: |
PubMed | Abstract | List all data
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