| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
135.4-150.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81331567 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 0.0545 | | FDR | 2.14E-03 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #167257
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were F2 pigs from a line developed from Duroc boar and Pietrain sows. |
| Breeds associated:
|
| Design: | Both eQTL and phenotypic QTL were detected. Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for growth and meat quality traits. A total of 23,182 markers and 43,130 markers were used for the eQTL and pQTL analyses, respectively. |
| Analysis: | GBLUP-based GWAS was performed. |
| Software: | |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Velez-Irizarry D, Casiro S, Daza KR, Bates RO, Raney NE, Steibel JP, Ernst CW |
| Affiliation: | Department of Animal Science, Michigan State University, East Lansing, MI, 48824, USA |
| Title: | Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs |
| Journal: | BMC genomics, 2019, 20(1): 3 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #30606113
Add your comments
Note similar findings
Note contradictions
|
