| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
64.3-64.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80993347 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CAPN9 (calpain 9) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #167636
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from an Erhualian x Shaziling F2 intercross population. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for umbilical hernia. A total of 17,349 SNPs were used for analysis. |
| Analysis: | A case-control analysis was used for GWAS. |
| Software: | PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li X, Xu P, Zhang C, Sun C, Li X, Han X, Li M, Qiao R |
| Affiliation: | College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, 450002, China |
| Title: | Genome-wide association study identifies variants in the CAPN9 gene associated with umbilical hernia in pigs |
| Journal: | Animal genetics, 2019, 50(2):162-165 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #30746724
Add your comments
Note similar findings
Note contradictions
|
