| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 130.2 (cM) |
| QTL Span: | 138.94-139.04 (cM)
292.1-292.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | - |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 0.005 | | Dominance effect: | 0.03 |
| Additive effect: | 0.12 |
| Associated Gene: | AMBP (alpha-1-microglobulin/bikunin precursor) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #18035
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were commercial Pietrain and Duroc x Pietrain F2 pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped for one SNP in each of AMBP, GC, and PPP1R3B and analyzed for meat quality traits. eQTL analysis was also performed. |
| Analysis: | The generalized linear model procedure was used for association studies. For eQTL analysis, interval mapping was performed based on a least-square method. |
| Software: | SAS, QTL Express, CRIMAP |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Cinar MU, Kayan A, Uddin MJ, Jonas E, Tesfaye D, Phatsara C, Ponsuksili S, Wimmers K, Tholen E, Looft C, Jüngst H, Schellander K |
| Affiliation: | Institute of Animal Science, Animal Breeding and Husbandry Group, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany |
| Title: | Association and expression quantitative trait loci (eQTL) analysis of porcine AMBP, GC and PPP1R3B genes with meat quality traits. |
| Journal: | Molecular biology reports, 2012, 39(4): 4809-21 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | g.22229C>T |
User inputs on reference #21947951
Add your comments
Note similar findings
Note contradictions
|
