| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 65 (cM) |
| QTL Span: | 70.06-70.25 (cM)
82.6-83.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Suggestive |
 |
P_values | 0.065 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CCT7 (chaperonin containing TCP1, subunit 7 (eta)) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from three populations of pigs: field population, IAH-Compton population (sire families of commercial pigs), and NADC population. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped for 31 SNPs in disease resistance candidate genes and analyzed for Salmonella shedding and/or tissue colonization. |
| Analysis: | Permutation-based hypothesis testing was used. |
| Software: | R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Uthe JJ, Bearson SM, Qu L, Dekkers JC, Nettleton D, Rodriguez Torres Y, O'Connor AM, McKean JD, Tuggle CK |
| Affiliation: | Department of Animal Science, Iowa State University, Ames, IA 50014, USA |
| Title: | Integrating comparative expression profiling data and association of SNPs with Salmonella shedding for improved food safety and porcine disease resistance |
| Journal: | Animal Genetics, 2011, 42(5):521-34 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | CCT7 #2 + #3 |
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