| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 4.56 (cM) |
| QTL Span: | 4.56-4.56 (cM)
6.7-6.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80879895 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.59E-2 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PRKN (parkin RBR E3 ubiquitin protein ligase) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Italian Large White pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 v2 BeadChip and analyzed for muscle fatty acid profile. A total of 40,115 SNPs were used for analysis. |
| Analysis: | GWAS was performed using the genome-wide association using mixed model-genomic control (GRAMMAR-GC) approach. |
| Software: | PLINK, GenABEL in R, GCTA v1.04, SAS, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Catillo G, Zappaterra M, Zambonelli P, Buttazzoni L, Steri R, Minelli G, Davoli R |
| Affiliation: | Department of Agricultural and Food Sciences (DISTAL), University of Bologna, Viale Fanin 46, I-40127 Bologna, Italy |
| Title: | Genome-wide association study identifies quantitative trait loci regions involved in muscle acidic profile in Large White heavy pigs |
| Journal: | Animal : an international journal of animal bioscience, 2020, 14(7):1342-1350 |
| Links: |
PubMed | Abstract | List all data
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