| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | 135.42 (cM) |
| QTL Span: | 135.37-135.48 (cM)
134.8-134.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs337468923 |
| Peak: | |
| Lower, "Significant": | rs346129849 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | <1E-8 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | ARL4C (ADP ribosylation factor like GTPase 4C) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #193564
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc, Landrace, and Large White pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using using a variety of SNP chips, with data imputed to 660K, and analyzed for number of teats, vertebrae, and ribs. A total of 527,186 (Large White), 462,414 (Landrace), or 441,288 (Duroc) SNPs were used for analysis. |
| Analysis: | GWAS was performed using linear animal models. |
| Software: | GCTA, PLINK, FImpute v2.2, Beagle v4.1, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | van Son M, Lopes MS, Martell HJ, Derks MFL, Gangsei LE, Kongsro J, Wass MN, Grindflek EH, Harlizius B |
| Affiliation: | Topigs Norsvin Research Center, Beuningen, Netherlands |
| Title: | A QTL for Number of Teats Shows Breed Specific Effects on Number of Vertebrae in Pigs: Bridging the Gap Between Molecular and Quantitative Genetics |
| Journal: | Frontiers in genetics, 2019, 10: 272 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #30972109
Add your comments
Note similar findings
Note contradictions
|
