| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 106.86 (cM) |
| QTL Span: | 106.37-107.34 (cM)
172.4-174.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs343327411 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | 8.01E-11 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CDK5RAP2 (CDK5 regulatory subunit associated protein 2) |
| Cis/Trans acting type: | cis  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc x Landrace/Yorkshire male pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the GeneSeek Genomic Profiler Porcine BeadChip 80K and analyzed for eQTL associated with androstenone in backfat. |
| Analysis: | Two methods, a parametric approach and a non-parametric approach, were used to identify eQTL. After eQTL identification, a trait association analysis was performed to test each eQTL for association with androstenone concentrations and gene expression levels. |
| Software: | R software, Matrix eQTL, Krux eQTL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Drag MH, Kogelman LJA, Maribo H, Meinert L, Thomsen PD, Kadarmideen HN |
| Affiliation: | Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark |
| Title: | Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis |
| Journal: | Physiological genomics, 2020, 51(10): 488-499 |
| Links: |
PubMed | Abstract | List all data
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