| QTL Map Information |
|---|
| Chromosome: | X |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
73.4-73.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs1107876317 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 8.49E-09 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from six pig populations: White Duroc x Erhualian F2, Sutai, Duroc-Landrace-Yorkshire, Laiwu, Erhualian, and Bamaxiang. |
| Breeds associated:
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| Design: | Animals were genotyped using either the PorcineSNP60 v2 BeadChip or the Affymetrix Axiom SNP chip, with data imputed to sequence level, and analyzed for muscle fatty acid composition traits. |
| Analysis: | Single-population GWAS was performed using mixed models. Meta-analysis was performed using a Z-score method. |
| Software: | SAMtools, Beagle, GATK, PLINK, METAL, GEMMA |
| Notes: | |
| Reference |
|---|
| Authors: | Zhang J, Zhang Y, Gong H, Cui L, Ma J, Chen C, Ai H, Xiao S, Huang L, Yang B |
| Affiliation: | State Key Laboratory for Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, China |
| Title: | Landscape of Loci and Candidate Genes for Muscle Fatty Acid Composition in Pigs Revealed by Multiple Population Association Analysis |
| Journal: | Frontiers in Genetics, 2020, 10:1067 |
| Links: |
PubMed | Abstract | List all data
|
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