| QTL Map Information |
|---|
| Chromosome: | 9 |
| QTL Peak Location: | n/a |
| QTL Span: | 3.93-4.09 (cM)
5.9-6.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | |
| Analysis type: | eQTL |
| Model tested: | n/a |
| Test base: | Chromosome-wise |
| Threshold significance level: | Suggestive |
 |
LOD_score | 2 | | F_Stat | 7.79 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Three-generation resource family (DuPi) founded by crossbreeding Duroc and Pietrain described in detail by Liu et al. All animals were free of the mutation at the ryanodine receptor locus, RYR1. |
| Breeds associated:
|
| Design: | Adjusted expression values of 11,457 probe-sets were regressed onto the additive and dominance coefficients in intervals of 1 cM. By using an up-to-date annotation and localization of the respective probe-sets, the integration of eQTL mapping data and information of
trait correlated expression. |
| Analysis: | Chromosome-wide significance levels were estimated by permutation tests. The 5% chromosome-wide threshold corresponds approximately to the suggestive linkage threshold proposed by Lander & Kruglyak (1995). |
| Software: | QTL express |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ponsuksili Siriluck, Murani Eduard, Schwerin Manfred, Schellander Karl, Wimmers Klaus, |
| Affiliation: | Leibniz Institute for Farm Animal Biology, Research Unit Molecular Biology, Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany. |
| Title: | Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits. |
| Journal: | BMC genomics, 2010, 11: 572 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Probe: Ssc.23527.1.A1; correlated with principal component 3 |
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