| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | 105.24 (cM) |
| QTL Span: | 105.24-105.24 (cM)
104.5-104.5 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80876395 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | NHLH2 (nescient helix loop helix 2) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from a Duroc-Yorkshire-Landrace composite population. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and pubertal controls were compared to gilts that failed to display estrus by 240 days of age. Following quality control, 49345 SNPs remained for final analysis. |
| Analysis: | GWAS was carried out using logistic regression. |
| Software: | SAS, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Nonneman D, Lents C, Rohrer G, Rempel L, Vallet J |
| Affiliation: | USDA-ARS, U.S. Meat Animal Research Center, Clay Center, NE, 68933-0166, USA. |
| Title: | Genome-wide association with delayed puberty in swine. |
| Journal: | Animal genetics, 2014, 45(1): 130-2 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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