| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
97.6-97.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs343248943 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 12.9% | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | VRTN (vertebrae development homolog (pig)) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #223550
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Beijing Black pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and GWAS was performed for teat and vertebra number. A total of 35,225 SNPs were used for analysis. |
| Analysis: | A linear mixed model was used. |
| Software: | TASSEL 5.0, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Niu N, Wang H, Shi G, Liu X, Liu H, Liu Q, Yang M, Wang L, Zhang L |
| Affiliation: | Key Laboratory of Animal (Poultry) Genetics Breeding and Reproduction, Ministry of Agriculture, Department of Animal Genetics and Breeding, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China |
| Title: | Genome scanning reveals novel candidate genes for vertebral and teat number in the Beijing Black Pig |
| Journal: | Animal Genetics, 2021, 52(5):734-738 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #34192356
Add your comments
Note similar findings
Note contradictions
|
