| QTL Map Information |
|---|
| Chromosome: | 13 |
| QTL Peak Location: | 0.38 (cM) |
| QTL Span: | 0.38-0.38 (cM)
0.9-0.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80883291 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 7.81 | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CPNE4 (copine IV) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Landrace, Yorkshire, and Songliao Black pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for cytokine levels and IgG. A total of 46079 SNPs were used for analysis. |
| Analysis: | Regression analysis was performed based on a linear mixed model. |
| Software: | DMU, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lu X, Liu J, Fu W, Zhou J, Luo Y, Ding X, Liu Y, Zhang Q |
| Affiliation: | Key Laboratory Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China ; Collaborative Innovation Center for Diagnosis and Treatment |
| Title: | Genome-wide association study for cytokines and immunoglobulin G in swine |
| Journal: | PloS one, 2013, 8 (10): e74846 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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