| QTL Map Information |
|---|
| Chromosome: | 13 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
192.4-192.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs343875906 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | USP16 (ubiquitin specific peptidase 16) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were purebred Large White pigs. |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped using a custom SNP chip, CAU50K, and GWAS was performed for growth and fatness traits. A total of 33,563 SNPs were used for analysis. |
| Analysis: | A single-SNP regression model was used to detect SNPs with additive or dominance effects. |
| Software: | DMU, PLINK, FIMPUTE |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yang W, Wu J, Yu J, Zheng X, Kang H, Wang Z, Zhang S, Zhou L, Liu J |
| Affiliation: | College of Animal Science and Technology, China Agricultural University, Beijing, 100193, China |
| Title: | A genome-wide association study reveals additive and dominance effects on growth and fatness traits in large white pigs |
| Journal: | Animal Genetics, 2021, 52(5): 749-753 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | additive SNP |
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