| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
97.2-97.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80859223 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PTGR2 (prostaglandin reductase 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc, Landrace, and Yorkshire pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip (v1, v2, v3, and K), and GWAS was performed for teat number. A total of 33,141 SNPs were used for analysis. |
| Analysis: | Single step GWAS was performed by combining the algorithms for SSGBLUP and back-solving to obtain estimates of marker effects and their associated p-values from estimates of breeding values. |
| Software: | BLUPF90, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Park J, Do KT, Park KD, Lee HK |
| Affiliation: | Department of Animal Biotechnology, Jeonbuk National University, Jeonju, Korea |
| Title: | Genome-wide association study using a single-step approach for teat number in Duroc, Landrace and Yorkshire pigs in Korea |
| Journal: | Animal Genetics, 2023, 54(6):743-751 |
| Links: |
PubMed | Abstract | List all data
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