| QTL Map Information |
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| Chromosome: | 12 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
3.3-3.3 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81328637 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 6.88E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | TIMP2 (TIMP metallopeptidase inhibitor 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were crossbred Duroc x Landrace x Yorkshire pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the GeneSeek pig 50K SNP chip, and GWAS were performed for rib and tenderloin weight. A total of 34,978 (tenderloin) or 34,976 (rib) SNPs were used for analysis. |
| Analysis: | A mixed linear model was used for single-locus GWAS. |
| Software: | GEMMA, GCTA v1.93.2 beta, qqman in R, Haploview v4.2 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhou F, Quan J, Ruan D, Qiu Y, Ding R, Xu C, Ye Y, Cai G, Liu L, Zhang Z, Yang J, Wu Z, Zheng E |
| Affiliation: | College of Animal Science and National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangzhou 510642, China |
| Title: | Identification of Candidate Genes for Economically Important Carcass Cutting in Commercial Pigs through GWAS |
| Journal: | Animals : an open access journal from MDPI, 2023, 13(20):3243 |
| Links: |
PubMed | Abstract | List all data
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