| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | 36.59 (cM) |
| QTL Span: | 36.59-36.59 (cM)
29.6-29.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80978047 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
VARIANCE | 52.97 | | P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | LEMD3 (LEM domain containing 3) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White x Minzhu pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina Porcine SNP60 BeadChip and analyzed for ear size. A total of 48238 SNPs were used for analysis. |
| Analysis: | A three-step approach, genome-wide rapid association using mixed model and regression (GRAMMAR) was used. |
| Software: | DMU, GenABEL, and Haplo.Stats in R; Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang L, Liang J, Luo W, Liu X, Yan H, Zhao K, Shi H, Zhang Y, Wang L, Wang L |
| Affiliation: | Key Laboratory of Farm Animal Genetic Resources and Germplasm Innovation of Ministry of Agriculture, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China |
| Title: | Genome-Wide Scan Reveals LEMD3 and WIF1 on SSC5 as the Candidates for Porcine Ear Size |
| Journal: | PloS one, 2014, 9(7): e102085 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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