| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
138.7-138.7 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs345877025 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.57E-07 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | HDAC4 (histone deacetylase 4) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from a White Duroc x Erhualian F3 intercross population. |
| Breeds associated:
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| Design: | Animals were genotyped using the GeneSeek GGP Porcine 50K BeadChip and association analysis was performed for growth and fatness traits. A total of 43,306 SNPs were used for analysis. |
| Analysis: | GWAS were performed based on both 50K-SNP and imputed data using mixed models. |
| Software: | GEMMA, PLINK v1.90 beta, Platypus v0.8.1, Vcftools, Beagle v4.1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Deng Z, Huang T, Yan G, Yang B, Zhang Z, Xiao S, Ai H, Huang L |
| Affiliation: | State Key Laboratory for Swine Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, China |
| Title: | A further look at quantitative trait loci for growth and fatness traits in a White Duroc × Erhualian F3 intercross population |
| Journal: | Animal biotechnology, 2021, : 1-12 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Imputation-based GWAS |
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