| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | 56.2 (cM) |
| QTL Span: | 38.26-38.85 (cM)
27.1-27.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | - |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.0053 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | COL5A3 (collagen, type V, alpha 3) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were Italian Large White pigs. |
| Breeds associated:
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| Design: | Animals were genotyped for 356 SNPs in three previously identified QTL regions and analyzed for post-mortem pH. |
| Analysis: | A stratified association analysis was performed using the Cochran-Mantel-Haenszel test. Significant markers were further validated using the MIXED procedure of SAS. |
| Software: | PLINK, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zambonelli P, Davoli R, Bigi M, Braglia S, De Paolis LF, Buttazzoni L, Gallo M, Russo V |
| Affiliation: | Dipartimento di Scienze e Tecnologie Agro-alimentari (DISTAL), Università di Bologna, Via Fratelli Rosselli, 107, 42123 Reggio Emilia, Italia |
| Title: | SNPs detection in DHPS-WDR83 overlapping genes mapping on porcine chromosome 2 in a QTL region for meat pH |
| Journal: | BMC genetics, 2013, 14: 99 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | SNP 5M_006 |
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