| QTL Map Information |
|---|
| Chromosome: | 8 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
68.1-68.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs321650743 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | SLC4A4 (solute carrier family 4 member 4) |
| Cis/Trans acting type: |  |
| Links:
Map view
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Wuzhishan pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using the GeneSeek-Neogen PorcineSNP80 BeadChip and GWAS was performed for coat color. A total of 40,345 SNPs were used for analysis. |
| Analysis: | The general linear model was used. |
| Software: | PLINK, EIGENSTRAT, Haploview 4.2, VCFtools |
| Notes: | |
| Reference |
|---|
| Authors: | Xu Q, Luo Y, Chao Z, Zhang J, Liu X, Tu D, Guo Q, Sun R, Wang F, Fang M |
| Affiliation: | Jiangxi Provincial Key Laboratory of Poultry Genetic Improvement, Institute of Biological Technology, Nanchang Normal University, Nanchang 330032, China |
| Title: | Discovery of Potential Candidate Genes for Coat Colour in Wuzhishan Pigs by Integrating SNPs and mRNA Expression Analysis |
| Journal: | Animals : an open access journal from MDPI, 2024, 14(23):3493 |
| Links: |
PubMed | Abstract | List all data
|
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