| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 139.72 (cM) |
| QTL Span: | 139.72-139.72 (cM)
258.0-258.1 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs80787918 |
| Peak: | |
| Lower, "Significant": | rs80907449 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 0.02912 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | TLR4 (toll-like receptor 4) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from the NADC-40 and NADC-77 populations (breeds not specified). |
| Breeds associated:
n/a
|
| Design: | Animals were genotyped for 18 SNPs in TLR4 and analyzed for Salmonella shedding status. |
| Analysis: | A chi-squared test was used. |
| Software: | PLINK, R software |
| Notes: | Only data with associated dbSNP IDs were entered. |
| Links: | Edit |
| Reference |
|---|
| Authors: | Kich JD, Uthe JJ, Benavides MV, Cantão ME, Zanella R, Tuggle CK, Bearson SM |
| Affiliation: | USDA/ARS/National Animal Disease Center, 1920 Dayton Ave, Ames, IA, USA |
| Title: | TLR4 single nucleotide polymorphisms (SNPs) associated with Salmonella shedding in pigs |
| Journal: | Journal of applied genetics, 2014, 55(2): 267-71 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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