| QTL Map Information |
|---|
| Chromosome: | 13 |
| QTL Peak Location: | 86.19 (cM) |
| QTL Span: | 86.19-86.19 (cM)
135.6-135.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80912100 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | UMPS (uridine monophosphate synthetase) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Landrace, Yorkshire, and Songliao Black purebred pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for susceptibility to ETEC F4ab/F4ac. A total of 50,972 (F4ab) or 50,483 SNPs (F4ac) were used for analysis. |
| Analysis: | An RM test using an asymptotic chi-square distribution was used. |
| Software: | ROADTRIPS, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Fu WX, Liu Y, Lu X, Niu XY, Ding XD, Liu JF, Zhang Q |
| Affiliation: | 1 Key Laboratory of Animal Genetics Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, China, 2 State Key Laboratory for Infectious Disease Prevention |
| Title: | A Genome-Wide Association Study Identifies Two Novel Promising Candidate Genes Affecting Escherichia coli F4ab/F4ac Susceptibility in Swine |
| Journal: | PLoS ONE, 2012, 7(3):e32127 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | F4ab |
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