| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 43.87 (cM) |
| QTL Span: | 43.87-43.87 (cM)
31.2-31.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80912557 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.01 | | Dominance effect: | -0.26 |
| Additive effect: | -1.27 |
| Associated Gene: | PPARD (peroxisome proliferator-activated receptor delta) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White x Meishan F2, American Large White, and French Large White pigs. |
| Breeds associated:
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| Design: | Animals were genotyped for two SNPs in the 5' regulatory region of PPARD and analyzed for carcass and fat deposition traits. |
| Analysis: | The general linear model procedure was used. |
| Software: | Haploview, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang Y, Gao T, Hu S, Lin B, Yan D, Xu Z, Zhang Z, Mao Y, Mao H, Wang L, Wang G, Xiong Y, Zuo B |
| Affiliation: | Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture and Key Lab of Agricultural Animal Genetics and Breeding, Ministry of Education, College of Animal Science and Veterinary Medicine, Huazhong Agricultural Universi |
| Title: | The Functional SNPs in the 5' Regulatory Region of the Porcine PPARD Gene Have Significant Association with Fat Deposition Traits |
| Journal: | PloS one, 2015, 10(11): e0143734 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Measured from first thoracic vertebra to anterior border of pubic symphysis |
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