Release 56
(Apr 24, 2025)

This linkage-map based data has been obsolete
(see Release notes 51, 52, 53). Information
provided here is only for retrospective online
support of publications that used this data.

QTL 7297 Description:

 Trait Information
Trait name: Longissimus muscle depth Vertebrate Trait Ontology: Longissimus thoracis muscle thickness
Reported name: Loin muscle depth Product Trait Ontology: n/a
Symbol: LMDEP Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:6
QTL Peak Location:51.5 (cM)
QTL Span:22.83-22.92 (cM)
11.0-11.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:SW1302
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:Microsatellites
Analysis type:QTL
Model tested:Mendelian
Test base:Chromosome-wise
Threshold significance level:Significant
F_Stat5.59
VARIANCE6.96
P_values<0.05
Dominance effect:0.220
Additive effect:0.278
Associated Gene:n/a
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #7297
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  •  QTL Experiment in Brief
    Animals:Animals were from a Meishan x Large White cross.
     Breeds associated:
    Design:Animals were genotyped for 12 polymorphisms in the GYS1 gene, as well as a number of microsatellites on chromosome 6, and analyzed for carcass and meat quality traits.
    Analysis:A single marker linear model was used for association analysis. Least square regression interval mapping was employed for QTL detection.
    Software:CRIMAP, SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Zuo, B; Xiong, Y Z; Deng, C Y; Su, Y H; Wang, J; Lei, M G; Li, F E; Jiang, S W; Zheng, R
    Affiliation:Key Laboratory of Swine Genetics and Breeding, Ministry of Agriculture, College of Animal Science and Veterinary Medicine, Huazhong Agriculture University, Wuhan 430070, China
    Title:Polymorphism, linkage mapping and expression pattern of the porcine skeletal muscle glycogen synthase (GYS1) gene.
    Journal:Animal genetics, 2005, 36 (3): 254-7
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #15932409
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  • Cite this Data:

    Animal QTLdb: QTL7297 was published in 2005, and was curated into QTLdb on 2009-08-21. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:7297

     

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