| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | 107.76 (cM) |
| QTL Span: | 107.39-108.12 (cM)
120.0-120.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80916624 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 0.004 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were commercial pigs from a three-way cross consisting of a Duroc sire line on an F1 hybrid female (Landrace * Large White). |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for meat pH and color traits. A total of 42,456 SNPs were used for analysis. |
| Analysis: | Marker effects were estimated by fitting all SNPs simultaneously using Bayes B methods. Further analyses on the SNPs within 1-Mb windows were implemented using a mixed animal model. |
| Software: | PLINK, SAS, Haploview, GenSel, ASREML |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang C, Wang Z, Bruce H, Kemp RA, Charagu P, Miar Y, Yang T, Plastow G |
| Affiliation: | Department of Agricultural, Food & Nutritional Sciences, University of Alberta, Edmonton, AB, T6G 2P5, Canada |
| Title: | Genome-wide association studies (GWAS) identify a QTL close to PRKAG3 affecting meat pH and colour in crossbred commercial pigs |
| Journal: | BMC genetics, 2015, 16: 33 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
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| Comments: | after accounting for effect of rs81266685 |
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