Release 56
(Apr 24, 2025)

QTL 9856 Description:

 Trait Information
Trait name: Longissimus muscle area Vertebrate Trait Ontology: Longissimus thoracis muscle area
Reported name: Loin muscle area Product Trait Ontology: n/a
Symbol: LMA Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:6
QTL Peak Location:26.96 (cM)
QTL Span:51.5-65 (cM)
21.4-29.2 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":SW1302
Peak:
Lower, "Significant":SWR1130
Lower, "Suggestive":n/a
Marker type:Microsatellites
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values0.03
Dominance effect:n/a
Additive effect:n/a
Associated Gene:MMP2 (matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase))
Cis/Trans acting type:
Links:   NCBI GeneDB  |  Edit  |   Map view

 Extended information:
(none)

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    •  QTL Experiment in Brief
    Animals:Animals were either from a population of various breed crosses or a Berkshire x Yorkshire family.
     Breeds associated:
    Design:Animals were genotyped for a SNP in MMP2 and analyzed for loin muscle area.
    Analysis:Mixed models were used for association analysis.
    Software:SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Onteru, S K; Fan, B; Rothschild, M F
    Affiliation:Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Ames, IA 50011, USA; mfrothsc@iastate.edu
    Title:The MMP2 gene may be associated with longissimus dorsi muscle area in the pig (Sus scrofa).
    Journal:Journal of applied genetics, 2009, 50(3): 251-2
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #19638680
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    • Cite this Data:

    Animal QTLdb: QTL9856 was published in 2009, and was curated into QTLdb on 2009-11-20. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:9856

     

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