From listmaster animalgenome.org Wed Jul 17 11:57:46 2024
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From: "Carlo Pecoraro" <infophysalia-courses.org>
Postmaster: submission approved by list moderator
To: Members of AnGenMap <angenmapanimalgenome.org>
Subject: Online course: Introduction to Nextflow
Date: Wed, 17 Jul 2024 11:57:46 -0500
Dear all,
registrations are now open for the next edition of the course "Introduction
to Nextflow"
Online, 7-9 October 2024
Course website: https://www.physalia-courses.org/.../course60/
Overview
Nextflow is a widely adopted workflow system for running high-throughput,
data-intensive applications across cloud and on-premise infrastructure. It
has fast become one of the primary technology platforms for computational
workloads in life sciences.
The framework allows scientists to write code in any scripting language,
define software dependencies with containers, connect tasks with the
event-driven dataflow programming DSL and then deploy anywhere: local
machines, grid computing systems or public cloud infrastructure.
Target audience and assumed background
The workshop is intended for users to become quickly proficient in Nextflow
technology, starting from basic through to advanced concepts. The majority of
the practicals will make use of command-line tools. Therefore familiarity
with a *nix environment (e.g. Linux or MacOS) and the shell (e.g. Bash) are
highly desirable.
PROGRAM
Monday- Classes from 2-8 pm CET
- Introduction to Nextflow
- Basic Scripting in Nextflow
- Channels
- Processes
Tuesday- Classes from 2-8 pm CET
- Operators
- Executors
- RNA-Seq pipeline
- Configuration
- Pipeline Parameter
Wednesday - Classes from 2-8 pm CET
- Workflows
- Modules
- Sharing Pipelines
- RNA-Seq pipeline 2
A repository will be provided with all the necessary material and software as
well as an AWS cloud environment to carry out the activities in the relevant
practical sessions.
Best regards,
Carlo
--------------------
Carlo Pecoraro, Ph.D
Physalia-courses DIRECTOR
infophysalia-courses.org
mobile: +49 17645230846
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