| Species | Breed | Seqeunces count | |
| cattle | | 4885 | |
| cattle | Aberdeen Angus | 12 | |
| cattle | Angus | 183 | |
| cattle | Angus beef cattle | 3 | |
| cattle | Angus cattle | 2 | |
| cattle | Angus-Hereford | 837 | |
| cattle | Belgian Blue X Holstein 01 | 1 | |
| cattle | Belgian Blue X Holstein 02 | 1 | |
| cattle | Belgian Blue X Holstein 03 | 1 | |
| cattle | Belgian Blue X Holstein 04 | 1 | |
| cattle | Belgian Blue X Holstein 05 | 1 | |
| cattle | Belgian Blue X Holstein 06 | 1 | |
| cattle | Belgian Blue X Holstein 07 | 1 | |
| cattle | Belgian Blue X Holstein 08 | 1 | |
| cattle | Belgian Blue X Holstein 09 | 1 | |
| cattle | Belgian Blue X Holstein 10 | 1 | |
| cattle | Belgian Blue X Holstein 11 | 1 | |
| cattle | Bos taurus | 27 | |
| cattle | Brangus (3/8 Brahman x 5/8 Angus) | 61 | |
| cattle | bull | 6 | |
| cattle | cattle | 1 | |
| cattle | Chianina | 4 | |
| cattle | Chinese Holstein | 2 | |
| cattle | Chinese Holstein cow | 12 | |
| cattle | Chinese Luxi cattle | 3 | |
| cattle | Chinese Qinchuan | 10 | |
| cattle | Chinese Qinchuan cattle | 3 | |
| cattle | Chinese Simmental | 3 | |
| cattle | Continental | 48 | |
| cattle | Cross | 4 | |
| cattle | crossbred | 70 | |
| cattle | crossbred Aberdeen Angus x Holstein Friesian | 28 | |
| cattle | crossbreds | 3 | |
| cattle | Friesian | 245 | |
| cattle | Friesian,JerseyCross | 159 | |
| cattle | Friesian-Jersey cross | 9 | |
| cattle | German Simmental | 6 | |
| cattle | German Simmental x Brahman | 12 | |
| cattle | Guernsey | 4 | |
| cattle | Hanwoo | 36 | |
| cattle | Heifer cow | 208 | |
| cattle | Hereford | 349 | |
| cattle | Holstein | 1050 | |
| cattle | Holstein cattle | 37 | |
| cattle | Holstein dairy cow | 8 | |
| cattle | Holstein Friesian | 986 | |
| cattle | Holstein-Friesian | 283 | |
| cattle | Hostein | 3 | |
| cattle | Jersey | 80 | |
| cattle | Kiwicross | 136 | |
| cattle | Maremmana | 4 | |
| cattle | missing | 24 | |
| cattle | mixed | 6 | |
| cattle | Norwegian Red | 20 | |
| cattle | not collected | 2 | |
| cattle | NZDairyCrossBreed | 1 | |
| cattle | Polish HF | 12 | |
| cattle | Polish Red | 12 | |
| cattle | purebred H | 1 | |
| cattle | purebred N | 1 | |
| cattle | Qinchuan | 6 | |
| cattle | Qinchuan cattle | 7 | |
| cattle | Red Holstein | 17 | |
| cattle | US Holstein | 8 | |
| cattle | US Holstein cow | 6 | |
| cattle | yellow cattle | 1 | |
| chicken | | 3468 | |
| chicken | 362_Liver | 1 | |
| chicken | 362_WAT | 1 | |
| chicken | 412_Liver | 1 | |
| chicken | 412_WAT | 1 | |
| chicken | 421_Liver | 1 | |
| chicken | 421_WAT | 1 | |
| chicken | 541_Liver | 1 | |
| chicken | 541_WAT | 1 | |
| chicken | 721_Liver | 1 | |
| chicken | 721_WAT | 1 | |
| chicken | 730_Liver | 1 | |
| chicken | 730_WAT | 1 | |
| chicken | 747_Liver | 1 | |
| chicken | 747_WAT | 1 | |
| chicken | 920_Liver | 1 | |
| chicken | 920_WAT | 1 | |
| chicken | AA chickens | 6 | |
| chicken | Arbor Acres | 23 | |
| chicken | Arbor Acres broiler chicks | 34 | |
| chicken | Arbor Acres broilers | 2 | |
| chicken | avian broiler | 2 | |
| chicken | Avian(broiler) | 12 | |
| chicken | Barred Rock chickens | 28 | |
| chicken | Bashang Long-tail Chicken | 2 | |
| chicken | Beijing fatty | 2 | |
| chicken | Beijing-You | 6 | |
| chicken | Boiler | 5 | |
| chicken | Bovans Brown | 6 | |
| chicken | Broiler | 97 | |
| chicken | broiler (Ross 308) | 28 | |
| chicken | broiler chicken | 30 | |
| chicken | brown-egg dwarf layer | 6 | |
| chicken | brown-egg dwarf layers | 1 | |
| chicken | Chahua | 2 | |
| chicken | Chicken | 13 | |
| chicken | COBB 500 | 8 | |
| chicken | Cobb500 | 25 | |
| chicken | COBB501 | 1 | |
| chicken | commercial Arbor Acres | 1 | |
| chicken | Cornish cross broiler | 2 | |
| chicken | Dongxiang black-bone chicken | 2 | |
| chicken | ELL-0 | 1 | |
| chicken | Fayoumi | 6 | |
| chicken | Fayoumi by Leghorn cross | 8 | |
| chicken | FI2012_3455_Liv | 4 | |
| chicken | FI2012_3455_WAT | 1 | |
| chicken | FI2012_3560_Liv | 4 | |
| chicken | FI2012_3560_WAT | 2 | |
| chicken | FI2012_3600_Liv | 5 | |
| chicken | FI2012_3600_WAT | 1 | |
| chicken | FI2012_3634_Liv | 4 | |
| chicken | FI2012_3634_WAT | 2 | |
| chicken | FI2012_3635_Liv | 4 | |
| chicken | FI2012_3635_WAT | 2 | |
| chicken | FI2012_3683_Liv | 5 | |
| chicken | FI2012_3683_WAT | 1 | |
| chicken | FI2012_3684_Liv | 5 | |
| chicken | FI2012_3684_WAT | 1 | |
| chicken | FI2012_3711_Liv | 4 | |
| chicken | FI2012_3711_WAT | 2 | |
| chicken | FI2012_3864_Liv | 4 | |
| chicken | FI2012_3864_WAT | 2 | |
| chicken | FI2012_3865_Liv | 4 | |
| chicken | FI2012_3865_WAT | 1 | |
| chicken | FI2012_3877_Liv | 5 | |
| chicken | FI2012_3877_WAT | 1 | |
| chicken | FI2012_3905_Liv | 4 | |
| chicken | FI2012_3905_WAT | 2 | |
| chicken | FI2012_3971_Liv | 4 | |
| chicken | FI2012_3971_WAT | 2 | |
| chicken | FI2012_4024_Liv | 5 | |
| chicken | FI2012_4024_WAT | 1 | |
| chicken | FI2012_4054_Liv | 4 | |
| chicken | FI2012_4054_WAT | 2 | |
| chicken | FI2012_4064_Liv | 5 | |
| chicken | FI2012_4064_WAT | 1 | |
| chicken | Gallus | 11 | |
| chicken | Gallus Gallus | 9 | |
| chicken | Guangxi yellow chicken | 6 | |
| chicken | Gushi | 6 | |
| chicken | Huangshan black chickens | 3 | |
| chicken | Hubbard Flex line | 8 | |
| chicken | Hy-Line Brown hens | 6 | |
| chicken | Hybrid from India | 2 | |
| chicken | Illinois | 11 | |
| chicken | Jinghai Yellow chicken | 33 | |
| chicken | layer (CSF1R-MacApple transgenic NOVOgen Brown) | 12 | |
| chicken | lean and fat line | 2 | |
| chicken | leghorn | 31 | |
| chicken | Leghorn by Fayoumi cross | 8 | |
| chicken | Leghorn/New Hampshire | 34 | |
| chicken | Lhasa White | 2 | |
| chicken | Lingnan Yellow | 2 | |
| chicken | Linzhi Tibetan | 2 | |
| chicken | Lohmann Selected Leghorn | 12 | |
| chicken | Luhua | 18 | |
| chicken | Lushi | 6 | |
| chicken | Lushi chicken | 18 | |
| chicken | N/A | 2 | |
| chicken | New Hampshire | 12 | |
| chicken | not applicable | 19 | |
| chicken | not collected | 15 | |
| chicken | P2a chickens | 24 | |
| chicken | Qingyuan Partridge chicken | 6 | |
| chicken | Qingyuan partridge?chicken | 9 | |
| chicken | Recessive White Rocks | 4 | |
| chicken | red jungle fowl | 54 | |
| chicken | Red Junglefowl | 6 | |
| chicken | Rhode Island Red | 2 | |
| chicken | Rhode Island White | 4 | |
| chicken | Roman Chicken | 16 | |
| chicken | rose-comb silky | 1 | |
| chicken | rose-comb_silky | 1 | |
| chicken | Ross | 1 | |
| chicken | ROSS 308 | 19 | |
| chicken | Ross 708 | 20 | |
| chicken | Ross-308™, Tissue:whole embryo, Stage:5 days of incubation | 1 | |
| chicken | Ross-308™, Tissue:whole embryo, Stage:7 days of incubation | 1 | |
| chicken | Ross-308™, Tissue:whole embryo, Stage:9 days of incubation | 1 | |
| chicken | ROSS308 fast growing-chicken line | 32 | |
| chicken | Ross708 | 46 | |
| chicken | SCWL | 6 | |
| chicken | Silky fowl | 5 | |
| chicken | Specific pathogen free White Leghorn (BWEL) | 4 | |
| chicken | SPF leghorn | 4 | |
| chicken | SPF_white leghorn | 25 | |
| chicken | Taiwan Country Chicken | 12 | |
| chicken | Undescriptive | 4 | |
| chicken | Wenchang | 4 | |
| chicken | White leghom | 2 | |
| chicken | White Leghorn | 382 | |
| chicken | White Leghorns | 4 | |
| chicken | Xinghua chicken | 12 | |
| horse | | 534 | |
| horse | Appaloosa | 2 | |
| horse | Arabian | 56 | |
| horse | Arabian horses | 33 | |
| horse | Fjord | 2 | |
| horse | Hanoverian | 2 | |
| horse | Hanoverian/Thoroughbred | 1 | |
| horse | Hanoverian/Trakehner/Mustang | 1 | |
| horse | Holsteiner | 3 | |
| horse | Lusitano | 2 | |
| horse | missing | 18 | |
| horse | Mixed breed | 6 | |
| horse | Mongolian horse | 13 | |
| horse | Mustang | 1 | |
| horse | Paint | 3 | |
| horse | Paso Fino | 1 | |
| horse | Percheron | 1 | |
| horse | pony | 12 | |
| horse | Pony of the Americas | 1 | |
| horse | Quarter | 1 | |
| horse | Quarter Horse | 26 | |
| horse | Quarter Horse_Replicate1 | 1 | |
| horse | Quarter Horse_Replicate2 | 1 | |
| horse | Shire | 1 | |
| horse | Standardbred | 62 | |
| horse | Thoroughbred | 35 | |
| horse | Thoroughbred cross | 5 | |
| horse | Trakehner x Mustang | 1 | |
| horse | Warmblood | 45 | |
| horse | Warmblood horse | 6 | |
| pig | | 4262 | |
| pig | Bama | 1 | |
| pig | Bama miniature pig | 7 | |
| pig | Bama minipigs | 1 | |
| pig | Berkshire | 3 | |
| pig | big white | 1 | |
| pig | BX-cross | 2 | |
| pig | Chenghua1 | 5 | |
| pig | Chinese Erhualian pig | 1 | |
| pig | Chinese experimental miniature pigs | 18 | |
| pig | Chinese Meishan | 13 | |
| pig | commercial hybrid (Large White, Duroc and Berkshire) | 40 | |
| pig | Cross-bred | 46 | |
| pig | crossbred | 8 | |
| pig | Crossbred (Landrace, Yorkshire, Duroc, Hampshire) | 24 | |
| pig | crossbreed | 4 | |
| pig | Danbred 600 X Newsham NC32 | 1 | |
| pig | Danbred 600 X Newsham NC33 | 1 | |
| pig | Danbred 600 X Newsham NC34 | 1 | |
| pig | Danbred 600 X Newsham NC35 | 1 | |
| pig | Danbred 600 X Newsham NC36 | 1 | |
| pig | Danbred 600 X Newsham NC37 | 1 | |
| pig | Danbred 600 X Newsham NC38 | 1 | |
| pig | Danbred 600 X Newsham NC39 | 1 | |
| pig | Danbred 600 X Newsham NC40 | 1 | |
| pig | Danbred 600 X Newsham NC41 | 1 | |
| pig | Danbred 600 X Newsham NC42 | 1 | |
| pig | Danbred 600 X Newsham NC43 | 1 | |
| pig | Danbred 600 X Newsham NC44 | 1 | |
| pig | Danbred 600 X Newsham NC45 | 1 | |
| pig | Danbred 600 X Newsham NC46 | 1 | |
| pig | Danbred 600 X Newsham NC48 | 1 | |
| pig | Danbred 600 X Newsham NC50 | 1 | |
| pig | Danbred 600 X Newsham NC51 | 1 | |
| pig | Danbred 600 X Newsham NC52 | 1 | |
| pig | Danbred 600 X Newsham NC53 | 1 | |
| pig | Danbred 600 X Newsham NC54 | 1 | |
| pig | Danbred 600 X Newsham NC55 | 1 | |
| pig | Danbred 600 X Newsham NC56 | 1 | |
| pig | Danbred 600 X Newsham NC57 | 1 | |
| pig | Danbred 600 X Newsham NC58 | 1 | |
| pig | Danbred 600 X Newsham NC59 | 1 | |
| pig | Danbred 600 X Newsham NC60 | 1 | |
| pig | Danbred 600 X Newsham NC61 | 1 | |
| pig | Danbred 600 X Newsham NC62 | 1 | |
| pig | Danbred 600 X Newsham NC63 | 1 | |
| pig | Danbred 600 X Newsham NC64 | 1 | |
| pig | Danbred 600 X Newsham NC65 | 1 | |
| pig | Danbred 600 X Newsham NC66 | 1 | |
| pig | Danbred 600 X Newsham NC68 | 1 | |
| pig | Danbred 600 X Newsham NC70 | 1 | |
| pig | Danbred 600 X Newsham NC71 | 1 | |
| pig | Dapulian | 12 | |
| pig | Diannan small-ear pig | 1 | |
| pig | DLY | 2 | |
| pig | domestica | 1 | |
| pig | Duroc | 30 | |
| pig | Duroc Landrace Yorkshire | 2 | |
| pig | Duroc x (Landrace x Large White) | 10 | |
| pig | Duroc x Yorkshire x Landrace | 6 | |
| pig | Duroc-landrace-yorkshire swine | 9 | |
| pig | Erhualian and Shaziling | 2 | |
| pig | F2_Duroc_x_Pietrain | 168 | |
| pig | German Landrace | 9 | |
| pig | Guizhou mini-pigs | 16 | |
| pig | Hampshire | 6 | |
| pig | Hampshire pigs | 6 | |
| pig | Hampshire x Duroc | 30 | |
| pig | Iberian x Landrace | 12 | |
| pig | Iberian x Landrace backcross | 40 | |
| pig | Indigenous | 3 | |
| pig | Italian Large White | 22 | |
| pig | Jinhua | 3 | |
| pig | Jinhua pig | 12 | |
| pig | Junmu-1 | 2 | |
| pig | Korean native pig | 3 | |
| pig | Laiwu | 2 | |
| pig | Landrace | 116 | |
| pig | Landrace cross | 23 | |
| pig | Landrace pig | 2 | |
| pig | Landrace pigs | 3 | |
| pig | Landrace x Yorkshire | 6 | |
| pig | Lantang | 10 | |
| pig | Large white | 83 | |
| pig | large white cross | 8 | |
| pig | Large White pig | 3 | |
| pig | Large White x Landrace Cross | 76 | |
| pig | Liangshan | 9 | |
| pig | Line 990 breed | 2 | |
| pig | Lu Chuan | 14 | |
| pig | LW | 16 | |
| pig | Meishan | 6 | |
| pig | Meishan piglets | 6 | |
| pig | Min pig | 6 | |
| pig | Mini-pig | 1 | |
| pig | Miniature Yucatan | 64 | |
| pig | missing | 51 | |
| pig | multi-breeds | 1 | |
| pig | multiple breeds | 2 | |
| pig | Neijiang1 | 5 | |
| pig | Norsvin Duroc | 55 | |
| pig | Norsvin Landrace | 39 | |
| pig | not applicable | 15 | |
| pig | outbreed | 6 | |
| pig | PIC | 6 | |
| pig | Pietrain | 13 | |
| pig | Pietrain Duroc Landrace Yorkshire population | 2 | |
| pig | Pietrain pigs | 7 | |
| pig | Pietrain(¡á)¡ÁLandrance(¡â) | 2 | |
| pig | Pietrain*Duroc*Landrace*Yorkshire | 2 | |
| pig | pig | 7 | |
| pig | Polish Landrace | 18 | |
| pig | Polish Large White | 14 | |
| pig | Polish large white (PLW) | 38 | |
| pig | Polish Large White x Polish Landrace | 12 | |
| pig | Pulawska | 16 | |
| pig | Qingyu1 | 6 | |
| pig | Rongchang | 8 | |
| pig | Rongchang pig | 24 | |
| pig | songliao black pigs | 5 | |
| pig | sus scrofa | 1 | |
| pig | Sutai | 12 | |
| pig | swine | 6 | |
| pig | Tibetan | 8 | |
| pig | Tibetan pig | 6 | |
| pig | Tibetan pigs (a black, Chinese indigenous breed) | 2 | |
| pig | Tibetan1 | 6 | |
| pig | Tongcheng | 19 | |
| pig | Tongcheng pig | 2 | |
| pig | Wannanhua | 3 | |
| pig | Wei | 3 | |
| pig | White Duroc × Erhualian | 6 | |
| pig | WT | 1 | |
| pig | Wujin pig | 3 | |
| pig | Wujin1 | 6 | |
| pig | Wuzhishan pig | 1 | |
| pig | X bred | 183 | |
| pig | Yacha1 | 6 | |
| pig | Yanan1 | 5 | |
| pig | Yorkshire | 69 | |
| pig | Yorkshire pig | 2 | |
| pig | Yorkshire-Poland China | 24 | |
| pig | Yorkshire/Landrace crossbred | 2 | |
| pig | Yorkshire1 | 6 | |
| pig | Yorshire | 5 | |
| sheep | | 5117 | |
| sheep | Assaf | 15 | |
| sheep | ba mei mutton | 8 | |
| sheep | Canaria Hair Sheep | 11 | |
| sheep | Canaria Sheep | 11 | |
| sheep | Churra | 15 | |
| sheep | Columbia-Rambouillet | 8 | |
| sheep | Comisana | 6 | |
| sheep | crossbred | 12 | |
| sheep | Dorper crossbred | 1 | |
| sheep | Dorper sheep | 1 | |
| sheep | Dorset | 2 | |
| sheep | Dorset sheep | 4 | |
| sheep | European mouflon and Finnsheep | 31 | |
| sheep | Finnsheep | 1 | |
| sheep | Gansu alpine fine wool sheep | 1 | |
| sheep | Hu sheep | 39 | |
| sheep | Kazakh | 2 | |
| sheep | Merino cross | 8 | |
| sheep | Polypay | 4 | |
| sheep | pure bred merino | 18 | |
| sheep | Qianhua Mutton Merino (QHMM) | 3 | |
| sheep | Rambouillet | 35 | |
| sheep | Romane | 6 | |
| sheep | scottish blackface | 58 | |
| sheep | Small Tail Han (STH) | 3 | |
| sheep | Small Tail Han sheep | 7 | |
| sheep | Small-tailed Han sheep | 1 | |
| sheep | Suffolk | 83 | |
| sheep | Suffolk cross | 12 | |
| sheep | Swiss Alpine | 36 | |
| sheep | Texel | 76 | |
| sheep | tibetan sheep | 6 | |