The Swine Genome Sequencing Consortium
News and Updates
(October 11, 2024)
## Genome Length ##
Chr U Length = 1,419,636
Chr U WGS Length = 240,478,184
Total Length (chr 1-18, X, Y) = 2,540,767,118
## Number of Contigs ##
No. of Contigs = 59,744
No. of contigs in U = 34
No. of contigs in WGS = 4,584
## Assembly N50/N90 ##
N50/10 total = 97,955 / 17,151
N50/90 U = 68,619 / 19,616
N50/90 U WGS = 112,084 / 30,573
## Genome Scaffold Stats ##
Total length of scaffolds = 2,588,106,638,
Total number of scaffolds = 8,486
Average length of scaffolds = 304,986
Largest scaffold length = 6,085,579
N50 = 806,269
N60 = 640,143
N70 = 481,531
N80 = 331,630
N90 = 177,619
N100 = 100
Sequencing in Progress Statistics [ As of 05:01AM on Apr 15, 2011 (Fri) ]
Sanger:
|
In process: 2,810,152,102;
Finished: 197,717,896;
Total: 3,007,869,998
( # of nucleotides ) |
Chromosome | Number of active projects | Number of accessioned projects |
U | 36 | 32 |
1 | 1965 | 1961 |
2 | 1004 | 1002 |
3 | 908 | 905 |
4 | 920 | 916 |
5 | 726 | 717 |
6 | 950 | 942 |
7 | 874 | 867 |
8 | 905 | 903 |
9 | 956 | 953 |
10 | 493 | 492 |
11 | 556 | 555 |
12 | 404 | 404 |
13 | 1319 | 1302 |
14 | 1007 | 1003 |
15 | 963 | 962 |
16 | 541 | 539 |
17 | 454 | 454 |
18 | 385 | 382 |
Total: | 16257 | 16178 |
Genbank:
|
From Sanger: 487,020;
In progress:
Total: 487,020 ( # of sequences deposited )
|
Sequencing progress in a glance
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